Citrus Sinensis ID: 018098

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Secondary Structure (PSIPRED)
ccccEEEEEEEEccEEEcEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEccccccccccccEEEEEEEcHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
marprcfldISIGVELEGRIIVEIYNDVIPKTAENFRALCtgekgigpntgvplhyKVIRFHRVIKGFMiqggdisagdgtggesiyglkfedenfeLKHERKGMLSmanagpntngsqffitttrtshldgkhVVFGRVIKGMGVVRSIEHvmtgdndcpiadvtitdcgeipegaddgisnffndgdsypdwpadldqtpnELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICwekegidegkssslrktksqiftnssacklKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALklepndggiKKELAVAKKKIHERREQEKKQYRKMFQ
Flexible Loop (DISEMBL)
marprcfldisigvelegRIIVEIYNDVIPKTAENFRALCTGEkgigpntgvPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHvmtgdndcpiaDVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWekegidegkssslrktksqiftnssacklkLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAlklepndggikkELAVAKKKiherreqekkqyrkmfq
Low Complexity Region (SEG)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQggdisagdgtggESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACklklgdlkgalldTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Disordered region (IsUnstruct)
****RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF*********************SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI**************IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE***************************************
Disordered Region (DISOPRED)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS**************DVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV**************QYRKMFQ
Disordered Region (DISEMBL)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV*********************
Disordered Region (DISPRO)
*ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK*FQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9C566	361	Peptidyl-prolyl cis-trans	yes	no	0.997	0.997	0.811	1e-176
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	no	0.980	0.956	0.495	1e-93
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	no	0.980	0.956	0.492	3e-93
P26882	370	Peptidyl-prolyl cis-trans	yes	no	0.986	0.962	0.484	6e-93
Q08752	370	Peptidyl-prolyl cis-trans	yes	no	0.986	0.962	0.487	1e-91
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.977	0.969	0.505	2e-88
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	no	0.983	0.946	0.485	4e-83
Q6CBP4	367	Peptidyl-prolyl cis-trans	yes	no	0.991	0.975	0.448	4e-81
Q5U8Z7	371	Peptidyl-prolyl cis-trans	N/A	no	0.983	0.956	0.462	6e-81
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	no	0.972	0.943	0.485	6e-81

>sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/360 (81%), Positives = 316/360 (87%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYK  R
Sbjct: 1   MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISA DGTGGESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  S++LRKTKSQIFTNS+ACKLK GD KGALLDTEFAMRD D+NVKA
Sbjct: 241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KKI  R  +EKKQYRKMF
Sbjct: 301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKKQYRKMF 360

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 234/357 (65%), Gaps = 3/357 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+K   FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  342 bits (876), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 176/357 (49%), Positives = 234/357 (65%), Gaps = 3/357 (0%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+K   FHR
Sbjct: 16  PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct: 76  IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
           T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct: 136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query: 184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
               GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct: 195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query: 244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR 303
               K  I++   S L+        N  ACKLK+ + +GA+     A+     N KAL+R
Sbjct: 255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct: 313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  341 bits (874), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/359 (48%), Positives = 234/359 (65%), Gaps = 3/359 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08752|PPID_HUMAN Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens GN=PPID PE=1 SV=3

 Score =  336 bits (862), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/359 (48%), Positives = 232/359 (64%), Gaps = 3/359 (0%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+K   F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKG+GV R +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEV-KGEKPAKLCVIAECGELKEGDDGGI 192

Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRY 252

Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL 301
           +D    K  I+    + L+        N  ACKLK+ + +GA+     A+     N KAL
Sbjct: 253 VD--SSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKAL 310

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA  + P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 240/370 (64%), Gaps = 17/370 (4%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M+ PR + DI+IG + EGRI+ E++ D++PKTAENFRALCTGEKG G  +G PL Y+   
Sbjct: 1   MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEG-KSGKPLSYQGSL 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD +AG+GTGGESIYG KFEDENF LKHE+  +LSMANAGP TNGSQF
Sbjct: 60  FHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+V+KG  VVR++E++ T  +D P+ D  I  CGE+ EG DDG
Sbjct: 120 FITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETV-SDRPVEDAVIAKCGELAEGEDDG 178

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I     DGD Y ++P D  + P E +  +     +K  GN ++KK D+  A +KY KA+R
Sbjct: 179 IRA-SEDGDVYEEYPDD-HEGPKEPNDVLQIATHLKDIGNTYFKKGDHANAAKKYLKAIR 236

Query: 241 YLDICWEKEGIDEGKSSSLR----KTKSQIFTNSSACKLKLGD------LKGALLDTEFA 290
           YL+   EK   DE     L       K   + N S C LKLG+      +   +L+ +  
Sbjct: 237 YLN---EKPAFDENDPKELEGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSK 293

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
                D  KA FR+G A M   D + A+E FEKA + +P D GIKKELA AK K+  +++
Sbjct: 294 YLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKAHEKDPEDAGIKKELANAKAKLAAKKQ 353

Query: 351 QEKKQYRKMF 360
           +EK  Y KMF
Sbjct: 354 KEKSAYAKMF 363

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  308 bits (789), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 179/369 (48%), Positives = 225/369 (60%), Gaps = 14/369 (3%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           AR R F DI+IG +  GRI+ E+YND++PKTAENFRALCTGEKG+G   G PLHYK   F
Sbjct: 10  ARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVG-KLGKPLHYKGSTF 68

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQGGD +AG+GTGGESIYG KFEDENF+LKH+R  +LSMANAGP TNGSQFF
Sbjct: 69  HRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFF 128

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI----PEGA 177
           +TT  T HLDGKHVVFG V+ G  VVR IE++ T   D P  D  I DCGE+       A
Sbjct: 129 VTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKT-QGDKPTKDAVIADCGELSGDAAVSA 187

Query: 178 DDGISNFFNDGDSYPDWPAD--LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKY 235
           D   ++ +  GD Y D+P D   D  P   S  +      K FGN+ +K  D  +AL KY
Sbjct: 188 DTKTADAY--GDEYEDFPEDEATDGQPLSASKILKIATDCKDFGNKAFKAGDLPVALDKY 245

Query: 236 RKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR--- 292
           +K LRYL+   E +         L   +  + +N++   +KL      +   + A+    
Sbjct: 246 QKGLRYLNEDPELDNEPADTKQKLDALRVSLNSNAALMNMKLSAWDECIRSADGALAVAT 305

Query: 293 -DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351
               D  KAL+R+G A + + D D+A+ S E+A KL P DG I  ELA  KK    R  +
Sbjct: 306 ISDKDRAKALYRRGYAQVRIKDEDSALTSLEEAKKLAPEDGAIVNELAAVKKAAAARMAK 365

Query: 352 EKKQYRKMF 360
           EK  Y+K F
Sbjct: 366 EKAAYKKFF 374

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6CBP4|PPID_YARLI Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPR6 PE=3 SV=1

 Score =  301 bits (772), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 164/366 (44%), Positives = 223/366 (60%), Gaps = 8/366 (2%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  PR F +++IG +  G+I  E++ D +PKTAENFRALCTGEKG     G+PLH+K   
Sbjct: 1   MTNPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKG-NTQAGIPLHFKGSS 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGD +AG+GTGGESIYG KF DE F   H++  +LSMANAGPNTNGSQF
Sbjct: 60  FHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTT T HLD KHVVFG+++ G G+VR IE   TG+ D P   VTI DCGE+P      
Sbjct: 120 FITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGELPADFQVP 179

Query: 181 ISNFFN-DGDSYPDWPADLDQTP-NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238
           + N  +  GD Y D+  D D    N+ +  + A++ +K  G + +K+ + + AL+KY KA
Sbjct: 180 VGNVDDGTGDDYEDFLKDNDNVDVNDPASVLGAIEKLKSIGTKLFKEGNAEGALKKYLKA 239

Query: 239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----G 294
             YL+  +  + + E   + +   +   + N +   LK+   K A+     A+ D     
Sbjct: 240 TTYLE-DYLPDDLSEENIAKVHALRISCYLNVALMALKVNQPKVAIKAATSALDDETVAN 298

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK 354
            +  KALFR+G  Y AL +   A++    AL+LEP DG IK ++   K+    RRE EKK
Sbjct: 299 KEKAKALFRRGSGYAALKNETDALKDLNAALELEPADGAIKNKIEEVKQAAQRRREAEKK 358

Query: 355 QYRKMF 360
           +Y   F
Sbjct: 359 KYAGFF 364

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5U8Z7|PPID_AMAMU Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1

 Score =  301 bits (771), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 171/370 (46%), Positives = 222/370 (60%), Gaps = 15/370 (4%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           RP  F DI+IG +L GR+   +Y+D++PKTAENFRALCTGEKG+G  +G PL YK   FH
Sbjct: 4   RPIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLG-QSGKPLWYKGSAFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIKGFM QGGD +AG+GTGGESIYG KFEDE F + H R  +LSMANAGPNTNGSQFFI
Sbjct: 63  RVIKGFMCQGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI- 181
           T + T HLDGKHVVFG VIKG  VVR+IE+    + D P   V I DCG++   +DD   
Sbjct: 123 TVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQL--SSDDPFL 180

Query: 182 -SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
                 DGD Y D+P D DQ        +    +I+   N  YK+ D   AL+KY K++R
Sbjct: 181 AERTSTDGDPYEDYPDDEDQELGNPETVLQIAKTIREVANRLYKQGDISGALQKYSKSIR 240

Query: 241 YLDICWE-KEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----GDLKGALLDTEFAMR-- 292
           YLD+  E  E      +   +   + +  NS+   +++      +   A+ +T  A+   
Sbjct: 241 YLDVHQELPENSPPDLNEQYKSLLAPLLLNSALAAIRIEPHSAANAMNAVANTSRALNRL 300

Query: 293 --DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
                D  KA +R+G A   + D   A +  + A +L P DG I  ELA   +K  E+RE
Sbjct: 301 ELSNADKAKAYYRRGLAKTIMRDEVGAEQDLKTANELLPEDGAIAAELAKIIQKKKEQRE 360

Query: 351 QEKKQYRKMF 360
           +EKK Y+KMF
Sbjct: 361 REKKAYKKMF 370

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Amanita muscaria (taxid: 41956)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 181/373 (48%), Positives = 216/373 (57%), Gaps = 22/373 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           RPR F DI IG +  GRI  E++NDV+PKTAENFRALCTGEKG+G   G PLH+K   FH
Sbjct: 6   RPRVFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMG-KQGKPLHFKGSIFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD +A +GTGGESIYG KF DENFELKH+R  +LSMAN+GP TNGSQFFI
Sbjct: 65  RVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFI 124

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP----EGAD 178
           TT  T HLDGKHVVFG VI G  VVR IE++ T   D P  DVTI +CGE+     + AD
Sbjct: 125 TTVPTPHLDGKHVVFGEVINGKSVVRKIENMPT-QADKPTTDVTIAECGELTGEDYDNAD 183

Query: 179 DGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA 238
               +    GD Y D+P D                 +K FGN  +K  +  + L KY+K 
Sbjct: 184 KQTPD--ATGDPYEDFPDDHQGEELSAPVCFKIASELKNFGNTAFKNGNIALGLEKYQKG 241

Query: 239 LRYLDICWEKEGID----EGKSSSLRKTKSQIFTNSSACKLKLGDLKG-------ALLDT 287
           LRYL+   E E  D    E +  SLR T   + +NSS    KLG  K        AL   
Sbjct: 242 LRYLNEFPEPEENDPKDLEPQMKSLRFT---LHSNSSLLANKLGQFKNGKTWATYALDVA 298

Query: 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
           + A     D  K  +R+  A   L + D A++  E+A  L P+D  I  E A  KK I  
Sbjct: 299 DAASAKDADRAKVYYRRAVAESGLKEEDEALKDLEQASTLAPSDAAIAAETARVKKAIKA 358

Query: 348 RREQEKKQYRKMF 360
           R  QEK   RK F
Sbjct: 359 REAQEKATARKFF 371

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
225428707	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.844	0.0
255561673	361	peptidyl-prolyl cis-trans isomerase d, p	1.0	1.0	0.858	0.0
224103535	370	predicted protein [Populus trichocarpa]	1.0	0.975	0.839	0.0
356521481	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.850	0.0
449438434	361	PREDICTED: peptidyl-prolyl cis-trans iso	1.0	1.0	0.836	0.0
224123292	370	predicted protein [Populus trichocarpa]	1.0	0.975	0.825	0.0
449517543	361	PREDICTED: LOW QUALITY PROTEIN: peptidyl	1.0	1.0	0.833	0.0
355329950	362	cyclophilin 40 [Nicotiana tabacum]	1.0	0.997	0.828	0.0
363807868	361	uncharacterized protein LOC100804110 [Gl	1.0	1.0	0.836	1e-180
224081585	361	predicted protein [Populus trichocarpa]	1.0	1.0	0.833	1e-180

>gi|225428707|ref|XP_002284980.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 [Vitis vinifera] gi|297741330|emb|CBI32461.3| unnamed protein product [Vitis vinifera]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/361 (84%), Positives = 337/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M RPRC+LDISIG ELEGR++VE+YND++P+TAENFRALCTGEKGIGPNTGVPLHYK + 
Sbjct: 1   MGRPRCYLDISIGEELEGRVVVELYNDIVPRTAENFRALCTGEKGIGPNTGVPLHYKGVC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI+GFMIQGGDISAG+GTGGESIYGLKFEDENFELKHERKGMLSMAN+G NTNGSQF
Sbjct: 61  FHRVIRGFMIQGGDISAGNGTGGESIYGLKFEDENFELKHERKGMLSMANSGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TGDNDCP  +V I DCGEIPEG D+G
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDCPTVNVLIADCGEIPEGVDNG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           +SNFF DGD+YPDWPADLD+ PN+LSWW NAVDS+K FGNEH+KKQDYKMALRKYRKALR
Sbjct: 181 VSNFFKDGDTYPDWPADLDENPNDLSWWTNAVDSVKAFGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKS IFTNSSACKLKLGDLKGALLDT+FAMRD ++NVKA
Sbjct: 241 YLDICWEKEGIDEEKSSCLRKTKSLIFTNSSACKLKLGDLKGALLDTDFAMRDEENNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           L+RQGQAYMALND+DAA ESF+KAL+LEPNDGGIK+ELA AKKKI +RREQE+K Y +MF
Sbjct: 301 LYRQGQAYMALNDIDAAAESFKKALELEPNDGGIKRELAAAKKKIADRREQERKAYSRMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561673|ref|XP_002521846.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis] gi|223538884|gb|EEF40482.1| peptidyl-prolyl cis-trans isomerase d, ppid, putative [Ricinus communis]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/361 (85%), Positives = 338/361 (93%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M RPRCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYK   
Sbjct: 1   MGRPRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCP 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRIIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRSIEHV TG+ D P  DV I DCGEIPEGADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGEGDYPAVDVLIADCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD +PDWPADL  +PNELSWWM+AVDSIK FGNE YKK D+KMALRKYRKALR
Sbjct: 181 ISNFFKDGDIFPDWPADLSDSPNELSWWMDAVDSIKGFGNESYKKLDFKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEK+GIDE KSSSLRKTKSQIFTNS+ACKLKLGDLKGALLDT+FAMR+GD+NVKA
Sbjct: 241 YLDICWEKDGIDEEKSSSLRKTKSQIFTNSAACKLKLGDLKGALLDTDFAMREGDNNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+M LND+DAAVESF+KAL+LEPND GIKKELA A+KKI++RR+QE+KQY+KMF
Sbjct: 301 LFRQGQAHMLLNDIDAAVESFKKALQLEPNDAGIKKELAAARKKINDRRDQERKQYQKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103535|ref|XP_002313093.1| predicted protein [Populus trichocarpa] gi|222849501|gb|EEE87048.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/361 (83%), Positives = 335/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R RCFLDISIG ELEGRI++E+YNDV+PKTAENFRALCTGEKG+GPNTGVPLHYK   
Sbjct: 1   MRRSRCFLDISIGGELEGRIVIELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR IKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRAIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD DCP +DV I DCGEIPE ADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVVKGMGVVRSMEHVTTGDADCPASDVIIVDCGEIPEDADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I NFF DGD+YPDWPADL++ PNELSWWM+AVDSIK FGNEH+KKQDYKMAL+KYRKALR
Sbjct: 181 ICNFFKDGDAYPDWPADLNEIPNELSWWMSAVDSIKAFGNEHFKKQDYKMALKKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRK KSQIFTNS+A KLKLGDLKGAL+DT+FA+RDG++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKAKSQIFTNSAASKLKLGDLKGALVDTDFAIRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMALNDVDAA ESF+KAL+LEPND GIK+EL  A+KKI+ERR++EKKQY KMF
Sbjct: 301 LFRQGQAYMALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKINERRDREKKQYEKMF 360

Query: 361 Q 361
           +
Sbjct: 361 K 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521481|ref|XP_003529384.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/361 (85%), Positives = 333/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGPNTGVPLH+K   
Sbjct: 1   MGRGRCFLDISIGQELEGRIVVELYDDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGD+D P  DV + DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDDDRPALDVKVVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGNE+Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNEYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SSSLRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GDDN KA
Sbjct: 241 YLDICWEKEGIDEEISSSLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+K I +RR+QEKK Y KMF
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKMIADRRDQEKKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438434|ref|XP_004136993.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/361 (83%), Positives = 335/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+K   
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHERKGMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERKGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KKI +RR QE+K Y KMF
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIADRRNQERKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123292|ref|XP_002330280.1| predicted protein [Populus trichocarpa] gi|222871315|gb|EEF08446.1| predicted protein [Populus trichocarpa]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/361 (82%), Positives = 332/361 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M RPRCFLDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYK  R
Sbjct: 1   MGRPRCFLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGCR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTR SHLDGKHVVFG+ +KG+GVVRSIEHV TGD +CP +DV I DCGEIPEGADDG
Sbjct: 121 FISTTRASHLDGKHVVFGKAVKGIGVVRSIEHVTTGDAECPTSDVMIVDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             NFF DGD+YPDWPADL ++P+ELSWWMNAVDSIK  GNEH+KKQDYKMALRKYRKALR
Sbjct: 181 TCNFFKDGDAYPDWPADLYESPSELSWWMNAVDSIKASGNEHFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS+LRKTKSQ FTNS+A +LKLGDLKGAL+DT+ A+RD ++N KA
Sbjct: 241 YLDICWEKEGIDEEKSSALRKTKSQTFTNSAASRLKLGDLKGALVDTDLAIRDWENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAY ALNDVDAA ESF+KAL+LEPND GIK+EL  A+KK++ERR+QE+++Y KMF
Sbjct: 301 LFRQGQAYKALNDVDAAAESFKKALQLEPNDAGIKRELNAARKKVNERRDQERRRYEKMF 360

Query: 361 Q 361
           +
Sbjct: 361 E 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517543|ref|XP_004165805.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP40-like [Cucumis sativus]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/361 (83%), Positives = 334/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R RCFLDISIG +LEGRI+VE+Y+DV+PKTAENFRALCTGEKGIGP+TGVPLH+K   
Sbjct: 1   MGRIRCFLDISIGGDLEGRIVVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFM+QGGDISAGDGTGGESIYG KF+DENFE+KHER GMLSMAN+GPN+NGSQF
Sbjct: 61  FHRVIKGFMVQGGDISAGDGTGGESIYGEKFDDENFEVKHERXGMLSMANSGPNSNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRT HLDGKHVVFG+V+KGMGVVRSIEHV TG+N CPIA+V I+DCGEIPEGADDG
Sbjct: 121 FITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENACPIAEVIISDCGEIPEGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFFNDGD++PDWP DL+Q+ ++L WW+ AVDS+KVFGNEHYKKQDYKMALRKYRKALR
Sbjct: 181 ISNFFNDGDTFPDWPTDLEQSSDDLEWWVKAVDSVKVFGNEHYKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE KSS LRKTKSQIFTNSSACKLKLGDLKGALLDT+FAMRDGDDNVKA
Sbjct: 241 YLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDDNVKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+D+AVESF+KA  LEPND  IKKELA A+KKI +RR QE+K Y KMF
Sbjct: 301 LFRQGQAHMALNDIDSAVESFKKASDLEPNDAAIKKELAAARKKIADRRNQERKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329950|dbj|BAL14274.1| cyclophilin 40 [Nicotiana tabacum]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/361 (82%), Positives = 333/361 (92%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M RPRC+LDISIG ELEGRI+VE+YNDV+PKTAENFRALCTGEKGIGPNTGVPLHYK +R
Sbjct: 1   MGRPRCYLDISIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FM+QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAG NTNGSQF
Sbjct: 61  FHRVIKSFMVQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGANTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+VIKGMGVVRS+EHV TGDND P+ DV+I DCGEIP+GADDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVIKGMGVVRSMEHVTTGDNDFPMVDVSIADCGEIPQGADDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I+NFF DGD YPDWPADLD   +++SWW+ A+++IK FGNE++KKQDYKMALRKYRKALR
Sbjct: 181 IANFFKDGDLYPDWPADLDNNTDDISWWVTALEAIKAFGNENFKKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKE IDE +S+ LRK KSQIFTNSSACKLKLGDLKGALLD +FAMRDG++N KA
Sbjct: 241 YLDICWEKEEIDEDRSAYLRKMKSQIFTNSSACKLKLGDLKGALLDADFAMRDGENNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQA+MALND+DAAVESF KAL+LEPNDGGIK +LA AKKKI +RR++EKK Y +MF
Sbjct: 301 LFRQGQAHMALNDIDAAVESFMKALELEPNDGGIKNQLAAAKKKIADRRDKEKKAYARMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807868|ref|NP_001241932.1| uncharacterized protein LOC100804110 [Glycine max] gi|255644776|gb|ACU22890.1| unknown [Glycine max]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/361 (83%), Positives = 330/361 (91%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M R RCFLDISIG ELEGRI+VE+Y+DV+PKTAENFRALCTGEKGIG NTGVPLH+K   
Sbjct: 1   MGRGRCFLDISIGEELEGRIVVELYDDVVPKTAENFRALCTGEKGIGSNTGVPLHFKGSC 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIKGFMIQGGDISAGDGTGGES+YGLKFEDENFELKHERKGMLSMAN+GP+TNGSQF
Sbjct: 61  FHRVIKGFMIQGGDISAGDGTGGESVYGLKFEDENFELKHERKGMLSMANSGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FI+TTRTSHLDGKHVVFG+V+KGMGVVRS+EHV TGDND P  DV I DCGEIPEG DDG
Sbjct: 121 FISTTRTSHLDGKHVVFGKVVKGMGVVRSVEHVATGDNDRPTLDVKIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           ISNFF DGD+YPDWPADLD++PNEL WWM +VDSIK FGN++Y+KQDYKMALRKYRKALR
Sbjct: 181 ISNFFKDGDTYPDWPADLDESPNELEWWMKSVDSIKAFGNDYYRKQDYKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLDICWEKEGIDE  SS LRKTKSQIFTNSSA KLKLGD+KGALLDTEFAMR+GD+N KA
Sbjct: 241 YLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           LFRQGQAYMAL+D+DAAVESF+KAL LEPND GIKKELA A+KKI + R+ EKK Y KMF
Sbjct: 301 LFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADGRDLEKKAYSKMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081585|ref|XP_002306460.1| predicted protein [Populus trichocarpa] gi|222855909|gb|EEE93456.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/361 (83%), Positives = 327/361 (90%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           MA+PRC+LDISIG ELEGRI+VE+Y DV+PKTAENFRALCTGEKGIGPNTGVPLHYK  R
Sbjct: 1   MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGR 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV++GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMAN GP+TNGSQF
Sbjct: 61  FHRVVRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANMGPDTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITTTRTSHLDGKHVVFG+V KGMGVVRSIEHV+T   D P  +  I DCGEIPEG DDG
Sbjct: 121 FITTTRTSHLDGKHVVFGKVTKGMGVVRSIEHVVTEGGDSPSQETVIVDCGEIPEGEDDG 180

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           IS+FF DGD+YPDWPADLD  P+E+SWWM AVDSIK FGNE YKKQD KMALRKYRKALR
Sbjct: 181 ISDFFKDGDTYPDWPADLDMKPDEISWWMKAVDSIKAFGNEQYKKQDCKMALRKYRKALR 240

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           YLD+CWEKE IDE KSSSLRKTKSQIFTNSSACKLKLGD+KGALLDT+FAMRDG+DN KA
Sbjct: 241 YLDVCWEKEDIDEEKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDFAMRDGEDNAKA 300

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
            FRQGQAYMALND+DAAV SF+KAL LEPNDGGIKKELA A+KKI +R +QEK+ Y +MF
Sbjct: 301 FFRQGQAYMALNDIDAAVASFKKALDLEPNDGGIKKELASARKKIADRHDQEKRAYARMF 360

Query: 361 Q 361
           Q
Sbjct: 361 Q 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.997	0.997	0.75	8.1e-147
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.983	0.956	0.453	1.5e-81
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.983	0.959	0.455	3.3e-79
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.980	0.956	0.459	3.3e-79
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.980	0.956	0.456	8.7e-79
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.983	0.959	0.444	1.1e-78
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.983	0.959	0.45	1e-77
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.977	0.948	0.447	5e-76
UNIPROTKB|G4MYB7	376	MGG_08104 "Peptidyl-prolyl cis	0.986	0.946	0.455	4.5e-75
UNIPROTKB|E1BXG9	370	PPID "Uncharacterized protein"	0.977	0.954	0.441	5.7e-75

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 270/360 (75%), Positives = 294/360 (81%)

Query:     1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
             M R +CF+DISIG ELEGRI++E+Y+DV+PKTAENFR LCTGEKG+GPNTGVPLHYK  R
Sbjct:     1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query:    61 FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
             FHRVIKGFMIQ            ESIYGLKF+DENFELKHERKGMLSMAN+GPNTNGSQF
Sbjct:    61 FHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQF 120

Query:   121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
             FITTTRTSHLDGKHVVFGRV KGMGVVRSIEHV   +  CP  DV I DCGEIPEGADDG
Sbjct:   121 FITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDG 180

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I +FF DGD YPDWP DL+++P ELSWWM  VD +K  GNEH+KKQDYKMALRKYRKALR
Sbjct:   181 ICDFFKDGDVYPDWPIDLNESPAELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALR 240

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             YLDICWEKEGIDE  S++LRKTKSQIFTNS+AC             TEFAMRD D+NVKA
Sbjct:   241 YLDICWEKEGIDEETSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKA 300

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             LFRQGQAYMALN+VDAA ES EKAL+ EPND GIKKE A   KKI  R  +EKKQYRKMF
Sbjct:   301 LFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKKQYRKMF 360

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 162/357 (45%), Positives = 220/357 (61%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
             PR F D+ IG E  GR++ E++ DV+PKTAENFRALCTGEKG+G +TG PLH+K   FHR
Sbjct:    16 PRVFFDVEIGAERVGRVVFELFADVVPKTAENFRALCTGEKGVGKSTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+V+KGMGVV+ +E + T + D P+    I +CGE   G D  I+ 
Sbjct:   136 TVPTPHLDGKHVVFGQVLKGMGVVKMLEAMETKE-DNPVKPCVIAECGEHKAGDDWSIAL 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GD+YPD+P D +    ++   ++  + +K  GN  +K Q+++ A++KY KALRYL+
Sbjct:   195 NDGSGDAYPDFPEDSEVDFKDVDKVLSVAEDLKNIGNNFFKAQNWQSAIKKYSKALRYLE 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
             +C      D+     L  T      N++AC              +  +     N KALFR
Sbjct:   255 MCGNIVD-DDSSQKKLEPTALSCILNTAACKLKLKLWQEAIESCDEVLELNQTNTKALFR 313

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + QA+  L + + A+   +KA ++ P D  I  E+   K+++ E +E+EKK Y KMF
Sbjct:   314 RAQAWQGLKEFNKAMVDLKKAHEIAPEDKAIGNEMNKVKQQVKEEKEKEKKIYAKMF 370

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 164/360 (45%), Positives = 217/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q ++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDIDKILLITEDLKNIGNTFFKSQKWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K   +E     L+        N  AC                A+     N KA
Sbjct:   252 YVD--GAKAVSEEADGLKLQPVALSCMLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+ + +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALAALKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 164/357 (45%), Positives = 216/357 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG GP TG PLH+K   FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R +E+V   + + P     I +CGE+ EG + GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARMLENVEV-NGEKPAKLCVIAECGELKEGDEWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRYLD
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 163/357 (45%), Positives = 216/357 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
             PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKG G  TG PLH+K   FHR
Sbjct:    16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAGPNTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
             T  T HLDGKHVVFG+VIKG+GV R++E+V   + + P     I +CGE+ EG D GI  
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKPAKLCVIAECGELKEGDDWGIFP 194

Query:   184 FFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD 243
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY+D
Sbjct:   195 KDGSGDSHPDFPEDADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVD 254

Query:   244 ICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFR 303
                 K  I++   S L+        N  AC                A+     N KAL+R
Sbjct:   255 S--SKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYR 312

Query:   304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             + Q +  L + D A+   +KA ++ P D  I+ EL   K+ I  ++++EK  Y KMF
Sbjct:   313 KAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 160/360 (44%), Positives = 218/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKGMGV + +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLC--VIAECGELKEGDDWG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y++    +   ++   + L+        N  AC                A+     N KA
Sbjct:   252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 162/360 (45%), Positives = 216/360 (60%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIG  TG PLH+K   F
Sbjct:    14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HR+IK FMIQ            ESIYG KFEDENF  KH+R+G+LSMANAG NTNGSQFF
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFF 133

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDG 180
             ITT  T HLDGKHVVFG+VIKG+GV R +E+V + G+    +    I +CGE+ EG D G
Sbjct:   134 ITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLC--VIAECGELKEGDDGG 191

Query:   181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
             I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY + LR
Sbjct:   192 IFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLR 251

Query:   241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKA 300
             Y+D    K  I+    + L+        N  AC                A+     N KA
Sbjct:   252 YVDS--SKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKA 309

Query:   301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             L+R+ Q +  L + D A+   +KA  + P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 161/360 (44%), Positives = 217/360 (60%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
             PR F D++I  E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   FHR
Sbjct:    16 PRVFFDVAIAGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFFIT
Sbjct:    76 IIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGCNTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  T HLDGKHVVFG+VIKGMGV R +E+V + G+   P     I +CGE+ EG D GI 
Sbjct:   136 TVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEK--PTKLCVIAECGELKEGDDWGIF 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD++PD+P D D    +++  +   + +K  GN  +K Q+++MA++KY K LRY+
Sbjct:   194 PKDGSGDNHPDFPEDADIDLKDVNKILLITEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    K   ++     L+        N  AC                A+     N KAL+
Sbjct:   254 ES--SKAVAEQADRLKLQPMALSCVLNIGACKLKMSNWQGAVDSCLEALEIDPSNTKALY 311

Query:   303 RQGQAYMALNDVDAAV--ESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             R+ Q +  L + D A+     +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct:   312 RRAQGWQGLKEYDQALLKADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 371

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|G4MYB7 MGG_08104 "Peptidyl-prolyl cis-trans isomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 168/369 (45%), Positives = 216/369 (58%)

Query:     2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             ARPR F DISI  +  GRI+ E+++DV+PKTAENFRALCTGEKGIG  +G PLHYK   F
Sbjct:    10 ARPRVFFDISIDDKPAGRIVFELFSDVVPKTAENFRALCTGEKGIG-KSGKPLHYKGSSF 68

Query:    62 HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
             HRVIK FMIQ            ESIYG KF+DENFEL H+R  +LSMANAGP TNGSQFF
Sbjct:    69 HRVIKQFMIQGGDFTAGNGTGGESIYGEKFDDENFELIHDRPFLLSMANAGPGTNGSQFF 128

Query:   122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGA--DD 179
             +TT  T HLD KHVVFG+V+ G  VVR +E++ T   D P+   TI DCGE+P  A   D
Sbjct:   129 VTTVPTPHLDKKHVVFGQVLSGKSVVRQVENLTTHAGDKPVKSATIADCGELPADAVVGD 188

Query:   180 GISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKAL 239
                     GD Y D+P D +  P +++         K +GN  +K  D+  AL KY+K L
Sbjct:   189 AAKEADKYGDKYEDFPEDDEGGPLDVARVTTIASDCKTYGNSAFKVGDHATALTKYQKGL 248

Query:   240 RYLDICWEKEGIDEGKSSSLRKTKSQI-FT-NSSACXXXXXXXX----XXXXXTEFAMRD 293
             RYL+   E E   E   + +++  + + FT N++A                  +  A++ 
Sbjct:   249 RYLNE--EPERDQENIPADVKEKLAALRFTLNNNAALMNLKLESWEDAKNAASSALAVKS 306

Query:   294 GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ 351
               D    KAL+R+G AY+ L D DAA++  E+A KL P D  + KEL   KK    R  +
Sbjct:   307 ASDADRAKALYRRGLAYIRLKDEDAAIKDLEEAKKLAPADAAVAKELEQVKKAAAARAAK 366

Query:   352 EKKQYRKMF 360
             EK  Y+K F
Sbjct:   367 EKAAYKKFF 375

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BXG9 PPID "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 158/358 (44%), Positives = 209/358 (58%)

Query:     4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
             PR F D+ IG E  GRI+ E++ D++PKTAENFRALCTGEKG G  TG PLHYK   FHR
Sbjct:    16 PRAFFDVDIGGERVGRIVFELFADIVPKTAENFRALCTGEKGTGATTGKPLHYKGCPFHR 75

Query:    64 VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
             +IK FM+Q            ESIYG KFEDENF  KH++ G+LSMANAGP TNGSQFFIT
Sbjct:    76 IIKQFMVQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKPGLLSMANAGPGTNGSQFFIT 135

Query:   124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITDCGEIPEGADDGIS 182
             T  TSHLDGKHVVFG+VIKGMGVV+ +E+V + G+N   +    I +CGE+ EG D GI 
Sbjct:   136 TVPTSHLDGKHVVFGQVIKGMGVVKILENVEVNGENPAKLC--VIAECGELKEGDDWGIV 193

Query:   183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
                  GD+YPD+P D D    ++   +   + IK  GN  +  +D + A +     L Y+
Sbjct:   194 PQDGSGDTYPDFPEDSDIDLKDVLKGVAIAEDIKNIGNILFSTRDAQQADKSIASCLMYV 253

Query:   243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALF 302
             +    +   +EG    L+        N  AC                A++    N KAL+
Sbjct:   254 EA--SETVAEEGDKPKLKTVGLSCVLNIGACKLKLSDWQGAIESCSEALQIDPANTKALY 311

Query:   303 RQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
             R+ Q +  + D+D A+   +KA ++ P D  I+ E    K+KI  ++E+EK  Y KMF
Sbjct:   312 RRAQGWQGIKDLDQALADLKKAHEIAPEDKAIQTETLKIKQKIKAQKEKEKAAYAKMF 369

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C566	CYP40_ARATH	5, ., 2, ., 1, ., 8	0.8111	0.9972	0.9972	yes	no
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.4543	0.9778	0.9540	yes	no
Q75A33	PPID_ASHGO	5, ., 2, ., 1, ., 8	0.4250	0.9861	0.9647	yes	no
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.4480	0.9916	0.9754	yes	no
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.4897	0.9279	0.9005	yes	no
Q4WIF3	PPID_ASPFU	5, ., 2, ., 1, ., 8	0.4721	0.9722	0.9310	yes	no
P26882	PPID_BOVIN	5, ., 2, ., 1, ., 8	0.4846	0.9861	0.9621	yes	no
P53691	PPID_YEAST	5, ., 2, ., 1, ., 8	0.4369	0.9889	0.9622	yes	no
Q9CR16	PPID_MOUSE	5, ., 2, ., 1, ., 8	0.4929	0.9806	0.9567	yes	no
Q6FNU6	PPID_CANGA	5, ., 2, ., 1, ., 8	0.4270	0.9778	0.9514	yes	no
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.4510	0.9806	0.9541	yes	no
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.4293	0.9889	0.9596	yes	no
Q11004	PPID_SCHPO	5, ., 2, ., 1, ., 8	0.4168	0.9445	0.9578	yes	no
Q6DGG0	PPID_RAT	5, ., 2, ., 1, ., 8	0.4957	0.9806	0.9567	yes	no
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.4852	0.9722	0.9435	yes	no
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.4184	0.9806	0.944	yes	no
P0C1I1	PPID_RHIO9	5, ., 2, ., 1, ., 8	0.5054	0.9778	0.9697	N/A	no
Q08752	PPID_HUMAN	5, ., 2, ., 1, ., 8	0.4874	0.9861	0.9621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	6e-98
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-80
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-70
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	5e-62
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-57
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	7e-55
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	1e-54
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-50
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-47
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	1e-46
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-36
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	6e-34
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	5e-27
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	8e-21
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	9e-15
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	2e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-12
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	5e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-07
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	1e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-07
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-07
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	5e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	1e-04
pfam13174	33	pfam13174, TPR_6, Tetratricopeptide repeat	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  287 bits (736), Expect = 6e-98
 Identities = 110/168 (65%), Positives = 129/168 (76%), Gaps = 4/168 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P+ F DI+IG E  GRI++E++ DV+PKTAENFRALCTGEKG G   G P  YK   FHR
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG---GKPFGYKGSTFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + G+GTGG+SIYG KF DENF+LKH   G+LSMANAGPNTNGSQFFIT
Sbjct: 58  VIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFIT 117

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T +T  LDGKHVVFG+V++GM VV+ IE+V +G N  P   V I DCG
Sbjct: 118 TVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  242 bits (620), Expect = 3e-80
 Identities = 105/173 (60%), Positives = 125/173 (72%), Gaps = 3/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
             RP+ F DISI     GRI+ E+++DV PKTAENFRALC G+K      G  LHYK   
Sbjct: 13  SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSS--GKNLHYKGSI 70

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGDI+  +GTGGESIYG KF DENF+LKH++ G+LSMANAGPNTNGSQF
Sbjct: 71  FHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQF 130

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT     LDGKHVVFG+VI+GM VVR++E   T  +  P   V +TDCGE+
Sbjct: 131 FITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  217 bits (555), Expect = 2e-70
 Identities = 99/171 (57%), Positives = 117/171 (68%), Gaps = 4/171 (2%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F D++IG    GRI +E++ D+ PKTAENFR  CTGE       G+P  YK  +FHR
Sbjct: 19  PVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEF---RKAGLPQGYKGCQFHR 75

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIYG KFEDENF  KH   G+LSMAN+GPNTNG QFFIT
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFIT 135

Query: 124 TTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             +   LD KHVVFGRV+  G+ VVR IE+V TG N+ P     I++CGE+
Sbjct: 136 CAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  194 bits (496), Expect = 5e-62
 Identities = 89/164 (54%), Positives = 101/164 (61%), Gaps = 19/164 (11%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIK 66
            LD + G     RI++E+Y D  PKT ENF +L  G             Y    FHRVI 
Sbjct: 1   TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIP 44

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELK-HERKGMLSMANAGPNTNGSQFFITTT 125
           GFMIQGGD +   G G  S  G KF DENF LK H R+G LSMANAGPNTNGSQFFITT 
Sbjct: 45  GFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTA 102

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
            T HLDGKH VFG+V++GM VV  IE   T +N  PI  VTI+D
Sbjct: 103 PTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  182 bits (465), Expect = 3e-57
 Identities = 77/164 (46%), Positives = 93/164 (56%), Gaps = 20/164 (12%)

Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIK 66
           FLDI+      GRI++E++ D  PKT ENF +LC  +KG          Y    FHRVI 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG---------FYDGTIFHRVIP 46

Query: 67  GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
           GFMIQGGD +     G  SI      DE       ++G LSMA +GPN+ GSQFFIT   
Sbjct: 47  GFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGD 101

Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
             HLDG + VFGRV++GM VV  IE V   D D P+ DV IT C
Sbjct: 102 APHLDGGYTVFGRVVEGMDVVEKIEKV-ETDGDRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  177 bits (450), Expect = 7e-55
 Identities = 74/159 (46%), Positives = 87/159 (54%), Gaps = 21/159 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E+Y D  PKT  NF  L                Y    FHRVI GFMIQGGD + 
Sbjct: 9   GDITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTG 57

Query: 78  GDGTGGESIYGLKFEDENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKH 134
           GDGTGG       F+DENF L  +R  +G LSMA AG PN+NGSQFFIT      LDGK+
Sbjct: 58  GDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKY 114

Query: 135 VVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITD 169
            VFG+V++GM VV  I++  T D     D P   V I  
Sbjct: 115 TVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  176 bits (447), Expect = 1e-54
 Identities = 84/151 (55%), Positives = 97/151 (64%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I + ++ +  PKT ENF        G         +Y    FHRVIKGFMIQ GD   
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA--RNG---------YYNNTIFHRVIKGFMIQTGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE +  LKH+R   LSMANAGPNTNGSQFFITT  T  LD KH V
Sbjct: 55  GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTV 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV+KGM VV+ IE+V T  ND P  D+ I
Sbjct: 115 FGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  165 bits (420), Expect = 1e-50
 Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E++ D  PK  ENF ALC              +Y    FHR IKGFM+Q GD   
Sbjct: 10  GDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G KFEDE  E LKH+ +G++SMAN GPNTNGSQFFIT  +  HLDGK+ V
Sbjct: 58  GTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+VI G   + ++E +       P+ ++ I D
Sbjct: 118 FGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  157 bits (400), Expect = 2e-47
 Identities = 73/153 (47%), Positives = 95/153 (62%), Gaps = 13/153 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G + +E++ D  PK  ENF  LC  +KG         +Y    FHR I+ FMIQGGD + 
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG---------YYDGTIFHRSIRNFMIQGGDPT- 56

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GGESI+G  F+DE    L H+ +G+LSMAN+GPNTNGSQFFIT     HLDGKH V
Sbjct: 57  GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTV 116

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FGRV+ G+  + ++E+V     D P  ++ I D
Sbjct: 117 FGRVVGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  155 bits (393), Expect = 1e-46
 Identities = 81/151 (53%), Positives = 95/151 (62%), Gaps = 14/151 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E+Y +  PKT +NF  L    +G         +Y    FHR+IK FMIQGGD   
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG---------YYNGTIFHRLIKDFMIQGGD-PT 54

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG KFEDE + ELKH   G+LSMANAGPNTNGSQFFIT   T  LDGKH +
Sbjct: 55  GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTI 114

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV KGM V+ ++  V T   D PI +V I
Sbjct: 115 FGRVSKGMKVIENMVEVQT-QTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  132 bits (334), Expect = 1e-36
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           R FLDISIG  L GR++ E++ DV+P+T ENFRAL TG  GI  NTGV L Y     H V
Sbjct: 54  RAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV 113

Query: 65  IK--GFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
            +    ++ G   S    + G  I      DE +  +H  +G+L+M + GP+T+GS F I
Sbjct: 114 DRNNNIIVLGELDSFNVSSTGTPI-----ADEGYRHRHTERGLLTMISEGPHTSGSVFGI 168

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T   +  LD K VVFG+ +  + ++  +E +   D   P+  VT++ CG
Sbjct: 169 TLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCG 217

Length = 249

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  123 bits (310), Expect = 6e-34
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 13/124 (10%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC              +Y    FHRV+ GF+IQGGD + 
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGESIYG  F+DE +  L+  R+G++ MANAG ++NGSQFF T  +   L+ KH +
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 137 FGRV 140
           FG+V
Sbjct: 123 FGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  104 bits (261), Expect = 5e-27
 Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 21/161 (13%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDIS 76
            G ++++++ D  P    NF  LC  +           +Y    F+ V K F+ Q GD +
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT 54

Query: 77  AGDGTGGESIYGLK-------FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTR-T 127
            G G GGESIY          FE E    LKH +KG +SM NAG N NGSQF+IT     
Sbjct: 55  -GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENL 113

Query: 128 SHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
            +LDGKH VFG+V++G  V+  I   +  D+  P+ D+ I 
Sbjct: 114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 87.5 bits (217), Expect = 8e-21
 Identities = 56/169 (33%), Positives = 70/169 (41%), Gaps = 38/169 (22%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGG---- 73
           G I+VE+Y+D  P T ENF A     KG          Y    FHRVI GF+IQGG    
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKG---------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 74  ---DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
                        E+  GL             +G ++MA    P++  SQFFI     + 
Sbjct: 56  DLAQKETLKPIKNEAGNGLS----------NTRGTIAMARTNAPDSATSQFFINLKDNAS 105

Query: 130 LD-----GKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITD 169
           LD       + VFG V +GM VV  I  V T       D P+ DV I  
Sbjct: 106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 71.0 bits (174), Expect = 9e-15
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 41/171 (23%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQGG    
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR--EGFYNNT---------IFHRVINGFMIQGGGFEP 57

Query: 78  GDGTGGESIYGLKFEDENFELKHE-------RKGMLSMANAG-PNTNGSQFFITTT---- 125
                     G+K +     +K+E        +G L+MA    P++  +QFFI       
Sbjct: 58  ----------GMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF 107

Query: 126 ---RTSHLDG-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
                  L G  + VF  V++GM VV  I+ V TG +    D P  DV I 
Sbjct: 108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIE 158

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 24/168 (14%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDIS 76
            G I +E+ +   P + +NF            N+G    Y    FHRVI GFMIQGG  +
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYV--------NSG---FYNNTTFHRVIPGFMIQGGGFT 85

Query: 77  AGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSHLD-GK- 133
                  +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + LD G+ 
Sbjct: 86  E-QMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQR 142

Query: 134 ---HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEIP 174
              + VFG+V+KGM V   I  V T D     + P   V I     +P
Sbjct: 143 DFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK  DY  AL  Y KAL                   L    +  + N +A   KLG
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL------------------ELDPDNADAYYNLAAAYYKLG 48

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             + AL D E A+    DN KA +  G AY  L   + A+E++EKAL+L+PN
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 50/176 (28%), Positives = 71/176 (40%), Gaps = 56/176 (31%)

Query: 19  RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGD---- 74
            I+++ YN   P TA NF  L   E+G          Y  + FHRV  GF++Q GD    
Sbjct: 10  TIVLDGYN--APVTAGNFVDLV--ERGF---------YDGMEFHRVEGGFVVQTGDPQGK 56

Query: 75  -------------------ISAGDGTGGESIYGLKFE-----DENFELKHERKGMLSMAN 110
                                 G     + +YG   E     DE   L     G ++MA 
Sbjct: 57  NPGFPDPETGKSRTIPLEIKPEGQK---QPVYGKTLEEAGRYDEQPVLPFNAFGAIAMAR 113

Query: 111 A--GPNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
               PN+  SQFF        T +R + LDG++ VFG V  G+ ++R ++    GD
Sbjct: 114 TEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELK---VGD 166

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           DN +AL   G A   L D D A+E++EKAL+L+P++      LA+A  K+ +  E+  + 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 356 YRK 358
             K
Sbjct: 61  LEK 63

Length = 69

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY  L D + A+E++EKAL+L+PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            KAL+  G AY+ L   D A+E +EKAL+L PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +AL+  G AY+ L D D A+E +EKAL+L+PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           L+ GD   AL   E A+       +AL   G+A +    +  A      AL  +P+D
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 45.2 bits (108), Expect = 5e-07
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
            +A +  GQ Y+ L D + A E +EKAL+L+PN
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPN 33

Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +   N      KLGD   AL   E A+    DN  A +    AY  L   + A+E +EKA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 325 LKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           L+L+P++      L +A  K       + ++  + ++
Sbjct: 61  LELDPDNAKAYYNLGLAYYK-----LGKYEEALEAYE 92

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGK 255
              ++            +++   G        Y+ AL    KAL+               
Sbjct: 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP------------ 198

Query: 256 SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD 315
                   ++   N     LKLG  + AL   E A+    DN +AL+      + L   +
Sbjct: 199 -----DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE 253

Query: 316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
            A+E+ EKAL+L+P+       L +A   +     +  ++
Sbjct: 254 EALEALEKALELDPD----LYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP 329
            KLGD   A+   E A+    DN +A +    AY+ L  D + A+E  EKAL+L+P
Sbjct: 14  FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
             AL    +A +AL D+D A+    +AL L+P+D      LA  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLLARL 44

Length = 44

>gnl|CDD|221956 pfam13174, TPR_6, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 299 KALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            AL++   AY+ L D D A E+ E+ LK  P+ 
Sbjct: 1   DALYKLALAYLKLGDTDEAKEALERLLKRYPDS 33

Length = 33

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
               +A +   D D A+ + E AL   P        L  A
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEA 40

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           +L+LG +  A+     A+    D+  AL   G+AY+AL D + A E   KA +L+P +  
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 334 IKKELAVAK 342
            + +L ++K
Sbjct: 399 ARTQLGISK 407

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK 323
               +      L LGD + A      A     +N  A  + G + ++  D   A+   E 
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422

Query: 324 ALKLEPN--------------DGGIKKELAVAKKKIHERREQEKKQ 355
           A +L+P                G   K LA AKK        EKKQ
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKK-------LEKKQ 461

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L  G LK AL     A     D+ +A    G+A +A  D++ AV SF+K L L+P+    
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637

Query: 335 KKELA----VAKKKIHERREQEK 353
              LA    V K         ++
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKR 660

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 19/98 (19%)

Query: 214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC 273
            +K  GN+ Y+ +D+  A++ Y KA+     C               K     ++N +AC
Sbjct: 129 KLKEKGNKAYRNKDFNKAIKLYSKAI----EC---------------KPDPVYYSNRAAC 169

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
              LGD +  + DT  A+    D  KAL R+  AY  L
Sbjct: 170 HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 19/124 (15%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           ++ G+ + +++DY  A++ YRKAL+                   R   SQ         L
Sbjct: 707 ELEGDLYLRQKDYPAAIQAYRKALK-------------------RAPSSQNAIKLHRALL 747

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
             G+   A+   E  ++   ++        + Y+A  D D A++ ++  +K  P++  + 
Sbjct: 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807

Query: 336 KELA 339
             LA
Sbjct: 808 NNLA 811

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 0.004
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                       AL KY +AL  L+     +   +   + L                +LG
Sbjct: 95  AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL----------GALYELG 144

Query: 279 DLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGI 334
           D + AL   E A+    + ++  +AL   G    AL   + A+E  EKALKL P+ D   
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 335 KKELAVAKKKIHERREQEKKQYRKMFQ 361
              L +   K+  + E+  + Y K  +
Sbjct: 205 LLNLGLLYLKL-GKYEEALEYYEKALE 230

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.87
KOG4234	271	consensus TPR repeat-containing protein [General f	99.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
PRK11189	296	lipoprotein NlpI; Provisional	99.45
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.44
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.42
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.37
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.34
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.29
PRK15359	144	type III secretion system chaperone protein SscB;	99.29
KOG1126	638	consensus DNA-binding cell division cycle control	99.28
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.28
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.26
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
PRK15331	165	chaperone protein SicA; Provisional	99.23
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.23
PRK12370	553	invasion protein regulator; Provisional	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
KOG1125	579	consensus TPR repeat-containing protein [General f	99.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.21
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.2
PRK12370	553	invasion protein regulator; Provisional	99.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.16
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.12
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
PLN02789	320	farnesyltranstransferase	99.09
PRK11189	296	lipoprotein NlpI; Provisional	99.09
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
KOG0553	304	consensus TPR repeat-containing protein [General f	99.03
KOG4555	175	consensus TPR repeat-containing protein [Function	99.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.01
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.0
KOG2003	840	consensus TPR repeat-containing protein [General f	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.99
PF13371	73	TPR_9: Tetratricopeptide repeat	98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.96
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.94
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.93
PLN02789	320	farnesyltranstransferase	98.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.9
KOG2076	895	consensus RNA polymerase III transcription factor	98.9
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.88
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.87
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.85
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.82
PF13512	142	TPR_18: Tetratricopeptide repeat	98.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.8
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.78
PRK14574	822	hmsH outer membrane protein; Provisional	98.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.76
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.74
KOG1125	579	consensus TPR repeat-containing protein [General f	98.71
KOG1129	478	consensus TPR repeat-containing protein [General f	98.71
KOG1310	758	consensus WD40 repeat protein [General function pr	98.71
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.69
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.69
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.68
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.67
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.67
PF13371	73	TPR_9: Tetratricopeptide repeat	98.66
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.66
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.64
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.58
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.54
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.54
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.51
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.49
PRK14574	822	hmsH outer membrane protein; Provisional	98.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.44
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.41
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.4
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.39
KOG2076	895	consensus RNA polymerase III transcription factor	98.39
PRK11906	458	transcriptional regulator; Provisional	98.37
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.35
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.31
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.3
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.29
PRK15331	165	chaperone protein SicA; Provisional	98.29
PF12688	120	TPR_5: Tetratrico peptide repeat	98.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
KOG1129	478	consensus TPR repeat-containing protein [General f	98.24
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.22
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.2
PRK10803	263	tol-pal system protein YbgF; Provisional	98.19
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.19
PF13428	44	TPR_14: Tetratricopeptide repeat	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.15
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.14
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.1
KOG4234	271	consensus TPR repeat-containing protein [General f	98.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.09
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.06
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.06
PRK11906	458	transcriptional regulator; Provisional	98.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.05
KOG4555	175	consensus TPR repeat-containing protein [Function	98.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.01
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.98
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.98
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.98
PF13428	44	TPR_14: Tetratricopeptide repeat	97.98
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.97
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.97
KOG2003	840	consensus TPR repeat-containing protein [General f	97.97
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.84
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.81
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.74
PF13512	142	TPR_18: Tetratricopeptide repeat	97.74
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.73
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.73
PRK10941	269	hypothetical protein; Provisional	97.72
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.68
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.64
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.58
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.53
PF13431	34	TPR_17: Tetratricopeptide repeat	97.51
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.43
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.43
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.42
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.4
KOG3364	149	consensus Membrane protein involved in organellar	97.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.35
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.35
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.35
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.27
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.27
KOG1586	288	consensus Protein required for fusion of vesicles	97.26
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.22
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.18
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.15
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.13
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.11
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.07
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.07
KOG2471	696	consensus TPR repeat-containing protein [General f	97.06
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.99
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.9
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.89
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.86
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.86
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.82
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.81
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.81
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.79
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.76
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.76
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.75
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.74
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.73
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.65
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.63
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.61
PRK04841	903	transcriptional regulator MalT; Provisional	96.6
COG2912	269	Uncharacterized conserved protein [Function unknow	96.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.57
PRK04841	903	transcriptional regulator MalT; Provisional	96.56
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.46
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.45
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.39
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.28
PLN03218	1060	maturation of RBCL 1; Provisional	96.24
PLN03218	1060	maturation of RBCL 1; Provisional	96.19
PLN03077	857	Protein ECB2; Provisional	96.18
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.15
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.11
PRK00969	508	hypothetical protein; Provisional	96.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.96
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.84
PLN03077	857	Protein ECB2; Provisional	95.73
KOG1585	308	consensus Protein required for fusion of vesicles	95.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.65
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.65
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.51
KOG1586	288	consensus Protein required for fusion of vesicles	95.51
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.49
KOG2471	696	consensus TPR repeat-containing protein [General f	95.48
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.26
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.21
KOG1585	308	consensus Protein required for fusion of vesicles	95.14
PRK10941	269	hypothetical protein; Provisional	95.05
PRK00969	508	hypothetical protein; Provisional	94.9
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	94.85
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.63
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.61
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.57
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.42
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.42
COG3947	361	Response regulator containing CheY-like receiver a	94.39
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.38
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.32
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.25
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.07
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	94.04
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.02
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.91
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.56
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.48
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.35
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.22
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.2
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.2
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.85
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.71
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.45
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	92.36
PHA02537	230	M terminase endonuclease subunit; Provisional	92.34
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.32
KOG3364	149	consensus Membrane protein involved in organellar	92.24
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.87
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.74
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.41
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.27
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.26
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.01
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.8
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.67
KOG1310	758	consensus WD40 repeat protein [General function pr	90.59
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.59
PF04212	69	MIT: MIT (microtubule interacting and transport) d	90.3
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	90.27
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.14
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.79
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.72
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	89.65
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.23
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.12
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.84
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.84
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.8
KOG2422	665	consensus Uncharacterized conserved protein [Funct	88.43
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.2
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	88.12
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	87.93
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.88
KOG2047	835	consensus mRNA splicing factor [RNA processing and	87.87
COG2912	269	Uncharacterized conserved protein [Function unknow	87.69
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	87.68
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.38
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.35
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.07
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.02
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.88
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.77
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	86.62
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.51
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.39
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	85.73
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	85.31
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.23
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.23
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.14
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.09
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.01
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	84.6
KOG0529	421	consensus Protein geranylgeranyltransferase type I	84.34
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	84.26
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	84.23
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.01
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	83.98
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.49
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	83.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.28
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	82.69
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.65
KOG2300	629	consensus Uncharacterized conserved protein [Funct	82.6
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	82.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	82.5
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.43
COG3947	361	Response regulator containing CheY-like receiver a	82.39
COG5191	435	Uncharacterized conserved protein, contains HAT (H	81.81
KOG2581	493	consensus 26S proteasome regulatory complex, subun	81.49
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.1
cd09240	346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	81.06
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	80.22
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.17

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-86  Score=585.97  Aligned_cols=358  Identities=53%  Similarity=0.813  Sum_probs=334.2

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|||+++|||+||||.|+||+||+||+.||+|.+|.+..+|++|+|+|+.|||||++|||||||++.++|+|
T Consensus         8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG   87 (372)
T KOG0546|consen    8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG   87 (372)
T ss_pred             CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence            89999999999999999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      |.||||.+|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||+|.+||+.|+++.++....|.
T Consensus        88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~  167 (372)
T KOG0546|consen   88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL  167 (372)
T ss_pred             cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             cceEeccccccCCC----CCCCCCCCCCCCCCCCCCCCCCCCC-cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHH
Q 018098          163 ADVTITDCGEIPEG----ADDGISNFFNDGDSYPDWPADLDQT-PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRK  237 (361)
Q Consensus       163 ~~v~I~~~~~l~~~----~~~~l~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~  237 (361)
                      .+|.|.+||++...    ..+.+...+.++|.++++|++...+ ..+....++.++..++.|+..+++++|..|...|.+
T Consensus       168 ~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k  247 (372)
T KOG0546|consen  168 ADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRK  247 (372)
T ss_pred             cceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHH
Confidence            99999999999877    6777777899999999999776553 445667777889999999999999999999999999


Q ss_pred             HHhhhccccccCCCCccc--hhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHH
Q 018098          238 ALRYLDICWEKEGIDEGK--SSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD  315 (361)
Q Consensus       238 al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~  315 (361)
                      +++++.. ++.....+..  ...+......++.|++.|-++++.+..|+..+..+++.++...+++|++++++..+.+++
T Consensus       248 ~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~  326 (372)
T KOG0546|consen  248 ALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYD  326 (372)
T ss_pred             Hhhhhcc-cccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchh
Confidence            9999887 3433333322  244667777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018098          316 AAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       316 ~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      +|+++++.+....|++..+...+......+.++++++++.+.+||+
T Consensus       327 ~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  327 EALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             hhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999985

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-57  Score=366.65  Aligned_cols=167  Identities=63%  Similarity=1.060  Sum_probs=160.0

Q ss_pred             CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhc-cCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCT-GEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~-~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .+|||||.+++++.|||+|.||+..+|+||+||+.||. +.++.|        |.|+.||||||+|||||||++.++|+|
T Consensus        40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG  111 (217)
T KOG0880|consen   40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG  111 (217)
T ss_pred             eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence            37999999999999999999999999999999999999 665554        999999999999999999999999999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.||||.+|+|||+.|+|++||+|||||.|||||||||||++...|||||+|+|||+|++||+++++|++..++..+.|.
T Consensus       112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~  191 (217)
T KOG0880|consen  112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL  191 (217)
T ss_pred             CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEeccccccCCCCC
Q 018098          163 ADVTITDCGEIPEGAD  178 (361)
Q Consensus       163 ~~v~I~~~~~l~~~~~  178 (361)
                      .++.|.+|+.+.....
T Consensus       192 e~v~I~~~g~l~~~~~  207 (217)
T KOG0880|consen  192 EDVVIANCGELPVEYL  207 (217)
T ss_pred             ccEEEeecCcccccch
Confidence            9999999998865543

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-56  Score=336.50  Aligned_cols=167  Identities=58%  Similarity=0.988  Sum_probs=161.4

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+|.++|||.||||.|++|+|++||++.|++.--   ..|+|+-|+++.|||||++|||||||+..++|+|
T Consensus        10 nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen   10 NPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCCCce
Confidence            8999999999999999999999999999999999999998621   3588889999999999999999999999999999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ..||||.+|+|||+.++|++||+|||||+|+++||+|||||...+.+||++|+|||+|++|+.++++|+++++..+.+|.
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEeccccc
Q 018098          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|.|..|+.
T Consensus       167 l~v~i~qCGe  176 (177)
T KOG0879|consen  167 LPVVIVQCGE  176 (177)
T ss_pred             CcEEEeeccc
Confidence            9999999985

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-50  Score=334.06  Aligned_cols=164  Identities=59%  Similarity=0.993  Sum_probs=160.0

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||.||+++.|++...|||+++|..|..|+|++||+.||++..|+|        |+|+.||||||.||+||||++.++|
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence            67999999999999999999999999999999999999999999997        9999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +||.||||.+|.||||.|+|..+|+|||||+|+|+|||||||++....||||+|+|||.|++|+++++.+++..+.. +.
T Consensus       206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsks-gk  284 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKS-GK  284 (298)
T ss_pred             CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877 89


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |...|.|..|+.+
T Consensus       285 p~qkv~i~~cge~  297 (298)
T KOG0111|consen  285 PQQKVKIVECGEI  297 (298)
T ss_pred             cceEEEEEecccc
Confidence            9999999999875

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-49  Score=299.16  Aligned_cols=153  Identities=52%  Similarity=0.837  Sum_probs=146.5

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      -|.|+++++     .|.|++|||-..||.||.||..|++.+           ||+|+.|||||++||||||||+ ++|+|
T Consensus         9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg-----------YYn~v~FHRii~DFmiQGGDPT-GTGRG   71 (164)
T KOG0881|consen    9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG-----------YYNGVIFHRIIKDFMIQGGDPT-GTGRG   71 (164)
T ss_pred             CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc-----------cccceeeeehhhhheeecCCCC-CCCCC
Confidence            478999988     799999999999999999999999998           9999999999999999999998 89999


Q ss_pred             CCccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |.||||.+|+||-. .|+|...|+|||||.|||+|||||||++.|.+||||+|++||+|..||+++..+-.+.+++.++|
T Consensus        72 GaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRP  151 (164)
T KOG0881|consen   72 GASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRP  151 (164)
T ss_pred             ccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCC
Confidence            99999999999965 79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEeccccc
Q 018098          162 IADVTITDCGE  172 (361)
Q Consensus       162 ~~~v~I~~~~~  172 (361)
                      ..+++|..+..
T Consensus       152 i~~~kIika~~  162 (164)
T KOG0881|consen  152 IDEVKIIKAYP  162 (164)
T ss_pred             ccceeeEeeec
Confidence            99999987654

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=9.3e-48  Score=334.99  Aligned_cols=175  Identities=38%  Similarity=0.630  Sum_probs=159.9

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecC-cEEEeCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKG-FMIQGGDISAGDG   80 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~-~~iq~G~~~~~~~   80 (361)
                      ++|+|||||+|+|+++|+|+||||.+.||+||+||++||++.++.+...|..++|+|+.||||+++ |+|||||+..   
T Consensus        51 ~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~---  127 (249)
T PTZ00221         51 NSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS---  127 (249)
T ss_pred             CCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC---
Confidence            489999999999999999999999999999999999999988776555566667999999999986 8999999763   


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                       ++.++||..|+||++.++|+++|+|+|++.|||++||||||++.++|+||++|+|||+|++||++|++|++++++..+.
T Consensus       128 -~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~gr  206 (249)
T PTZ00221        128 -FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGR  206 (249)
T ss_pred             -CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence             2457789999999999999999999999999999999999999999999999999999999999999999999887799


Q ss_pred             cccceEeccccccCCCCCCC
Q 018098          161 PIADVTITDCGEIPEGADDG  180 (361)
Q Consensus       161 P~~~v~I~~~~~l~~~~~~~  180 (361)
                      |..+|+|.+|+++..+.+..
T Consensus       207 P~~~V~I~~Cgvl~~~~p~~  226 (249)
T PTZ00221        207 PLLPVTVSFCGALTGEKPPG  226 (249)
T ss_pred             CCCCeEEEECeEecCCCCCc
Confidence            99999999999997664433

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=8e-47  Score=315.89  Aligned_cols=164  Identities=66%  Similarity=1.111  Sum_probs=153.5

Q ss_pred             CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC
Q 018098            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      |+||||++++|++.|+|+||||.+.||.||+||++||++.++.+.   +..+|+++.||||+|+|+|||||+..++|+++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~   77 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG   77 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence            899999999999999999999999999999999999997554321   33489999999999999999999887788999


Q ss_pred             CccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcccc
Q 018098           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .++||..|++|+..++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||++++|++++++ ++.|..
T Consensus        78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~  156 (164)
T cd01926          78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKK  156 (164)
T ss_pred             CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcC
Confidence            9999999999998999999999999999999999999999999999999999999999999999999999998 789999


Q ss_pred             ceEecccc
Q 018098          164 DVTITDCG  171 (361)
Q Consensus       164 ~v~I~~~~  171 (361)
                      +|+|.+|+
T Consensus       157 ~i~I~~cG  164 (164)
T cd01926         157 KVVIADCG  164 (164)
T ss_pred             CeEEEECC
Confidence            99999986

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=5e-47  Score=321.56  Aligned_cols=170  Identities=58%  Similarity=0.948  Sum_probs=156.7

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+|||||++++++.|+|+||||.+.+|+||+||+.||+++...   .|.+..|+++.||||+|+|+|||||+..++|
T Consensus        16 ~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         16 PKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            4589999999999999999999999999999999999999876321   1222359999999999999999999877889


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEE-eChHHHHHHhccCCCCCC
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~-~g~~vl~~i~~~~~~~~~  159 (361)
                      +|+.++||..|++|++.++|+++|+|+|++.++++++|||||++.+.|+||++|+|||+|+ +||++|++|+++.++..+
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~  172 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNN  172 (186)
T ss_pred             CCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCC
Confidence            9999999999999998899999999999999999999999999999999999999999999 799999999999998889


Q ss_pred             ccccceEecccccc
Q 018098          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~l  173 (361)
                      .|..+|+|.+|+++
T Consensus       173 ~P~~~i~I~~cG~~  186 (186)
T PLN03149        173 RPKLACVISECGEM  186 (186)
T ss_pred             CCcCCeEEEeCEeC
Confidence            99999999999864

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=2.1e-46  Score=317.57  Aligned_cols=170  Identities=62%  Similarity=0.997  Sum_probs=156.9

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+||||++++|++.|+|+||||.+.||.||+||++||++.....  .|+..+|+|+.||||+|+++|||||+..++|
T Consensus        13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            45899999999999999999999999999999999999999764322  2444599999999999999999999987788


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +++.++||..+++|+..++|.++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|||+|++|+...+. .+.
T Consensus        91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~  169 (183)
T PTZ00060         91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGY  169 (183)
T ss_pred             CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCC
Confidence            9999999999999988999999999999999999999999999999999999999999999999999999998875 478


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|.|.+|+++
T Consensus       170 P~~~v~I~~cg~~  182 (183)
T PTZ00060        170 PKKPVVVTDCGEL  182 (183)
T ss_pred             CcCCeEEEEeEEc
Confidence            9999999999986

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.9e-46  Score=300.57  Aligned_cols=144  Identities=52%  Similarity=0.825  Sum_probs=130.2

Q ss_pred             CeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCC
Q 018098           14 VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED   93 (361)
Q Consensus        14 ~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   93 (361)
                      .+..|+|+||||++.||+||+||+.||+.+           ||+|+.||||||+|||||||++.++|+|++   +.+|++
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g-----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~   70 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLVKEG-----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD   70 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHHHcC-----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence            466999999999999999999999999977           999999999999999999999987799888   488999


Q ss_pred             CccccCCCC--ceEEEeecCC-CCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC----CccccceE
Q 018098           94 ENFELKHER--KGMLSMANAG-PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVT  166 (361)
Q Consensus        94 e~~~~~~~~--~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P~~~v~  166 (361)
                      |++...|++  +|+|||||.+ |||+||||||++.+.|+||++|+|||+|++|||+|++|++..+...    +.|..++.
T Consensus        71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~  150 (158)
T COG0652          71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK  150 (158)
T ss_pred             cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence            999888877  9999999999 9999999999999999999999999999999999999999877653    34546666


Q ss_pred             ecccc
Q 018098          167 ITDCG  171 (361)
Q Consensus       167 I~~~~  171 (361)
                      |....
T Consensus       151 i~~~~  155 (158)
T COG0652         151 ILSVK  155 (158)
T ss_pred             Eeeee
Confidence            65544

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=5.3e-43  Score=290.86  Aligned_cols=152  Identities=47%  Similarity=0.775  Sum_probs=142.5

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||++ ++|+++.+++|..+++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E   73 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKG-----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE   73 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcC-----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcc
Confidence            34899999999999999999999999987           9999999999999999999986 67889999999999999


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecccccc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI  173 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~l  173 (361)
                      .. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++.++.|..+|+|.++.++
T Consensus        74 ~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~  153 (159)
T cd01923          74 FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF  153 (159)
T ss_pred             cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence            54 67899999999999999999999999999999999999999999999999999999999888999999999999998


Q ss_pred             CCCCC
Q 018098          174 PEGAD  178 (361)
Q Consensus       174 ~~~~~  178 (361)
                      ..+++
T Consensus       154 ~dpf~  158 (159)
T cd01923         154 VDPFE  158 (159)
T ss_pred             eCCCC
Confidence            76643

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=4.2e-43  Score=289.34  Aligned_cols=148  Identities=49%  Similarity=0.824  Sum_probs=139.1

Q ss_pred             EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES   85 (361)
Q Consensus         6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (361)
                      |.|+++     .|+|+||||.+.||+||+||+.||+++           ||+|+.||||+|+|+|||||+. ++|+++.+
T Consensus         3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~   65 (153)
T cd01928           3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGES   65 (153)
T ss_pred             EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCc
Confidence            666655     899999999999999999999999987           9999999999999999999986 67888899


Q ss_pred             cCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccc
Q 018098           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (361)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~  164 (361)
                      +||.+|++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++|||++++|++++++..+.|..+
T Consensus        66 ~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~  145 (153)
T cd01928          66 IWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEE  145 (153)
T ss_pred             cCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCC
Confidence            99999999986 57899999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             eEeccc
Q 018098          165 VTITDC  170 (361)
Q Consensus       165 v~I~~~  170 (361)
                      |+|.++
T Consensus       146 i~I~~~  151 (153)
T cd01928         146 IRIKDV  151 (153)
T ss_pred             eEEEEe
Confidence            999876

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=5.6e-43  Score=287.23  Aligned_cols=143  Identities=58%  Similarity=0.882  Sum_probs=135.7

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||+.||+++           ||+|+.||||+|||+|||||+. ++|+++.++||..|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e   71 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNG-----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE   71 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence            45899999999999999999999999987           9999999999999999999986 67889999999999999


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~  169 (361)
                      .. .++|.++|+|+|++.+|++++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.+
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            76 7889999999999999999999999999999999999999999999999999999999988899999999975

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-43  Score=288.16  Aligned_cols=164  Identities=60%  Similarity=1.012  Sum_probs=155.6

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEE---eecCcEEEeCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR---VIKGFMIQGGDISA   77 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~r---v~~~~~iq~G~~~~   77 (361)
                      |.||.||||++++++++|+++++||.|+.|+|++||..||++.++++        |+++.|||   .+++||+||||++.
T Consensus         1 ~~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~   72 (167)
T KOG0865|consen    1 MVNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTC   72 (167)
T ss_pred             CCCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCcccc
Confidence            78999999999999999999999999999999999999999887775        99999999   44479999999999


Q ss_pred             CCCCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCC
Q 018098           78 GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~  157 (361)
                      ++|+|+.||||++|+||++.++|..||+|||||.|||+++|||||++....||||+|+|||+|.+||+++++++...+..
T Consensus        73 hngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~  152 (167)
T KOG0865|consen   73 HNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRN  152 (167)
T ss_pred             cCCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999976665


Q ss_pred             CCccccceEecccccc
Q 018098          158 NDCPIADVTITDCGEI  173 (361)
Q Consensus       158 ~~~P~~~v~I~~~~~l  173 (361)
                       +.+...+.|.+|+.+
T Consensus       153 -gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  153 -GKTSKKITIADCGQL  167 (167)
T ss_pred             -CcccccEEEecCCcC
Confidence             889999999999864

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=1.9e-42  Score=283.15  Aligned_cols=141  Identities=57%  Similarity=0.861  Sum_probs=133.1

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+. ++|.++.++||.+|++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e   71 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRG-----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE   71 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence            56899999999999999999999999987           9999999999999999999986 67888899999999999


Q ss_pred             c-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEec
Q 018098           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (361)
Q Consensus        95 ~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~  168 (361)
                      . ..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||+|++|++++++ ++.|..+|+|.
T Consensus        72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~  145 (146)
T cd01922          72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKIL  145 (146)
T ss_pred             cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEe
Confidence            5 4789999999999999999999999999999999999999999999999999999999998 68999999985

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=2.9e-42  Score=288.76  Aligned_cols=153  Identities=40%  Similarity=0.672  Sum_probs=140.2

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCC------
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYG------   88 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~------   88 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|+|+|||||+. ++|+++.++++      
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~-----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~   71 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLK-----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ   71 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcC-----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence            45899999999999999999999999987           9999999999999999999986 67888888775      


Q ss_pred             -CCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCC-CCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccce
Q 018098           89 -LKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTR-TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADV  165 (361)
Q Consensus        89 -~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~-~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v  165 (361)
                       ..|++|.. .++|+++|+|+||+.++++++|||||++.+ .|+||++|+|||+|++||++|++|+.+.++..+.|..+|
T Consensus        72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i  151 (166)
T cd01921          72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI  151 (166)
T ss_pred             CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence             35777764 678999999999999999999999999975 799999999999999999999999999998889999999


Q ss_pred             EeccccccCCCCCC
Q 018098          166 TITDCGEIPEGADD  179 (361)
Q Consensus       166 ~I~~~~~l~~~~~~  179 (361)
                      +|..+.++..++++
T Consensus       152 ~I~~~~i~~~pf~~  165 (166)
T cd01921         152 RIKHTHILDDPFPD  165 (166)
T ss_pred             EEEEEEEECCCCCC
Confidence            99999999877665

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-43  Score=311.21  Aligned_cols=150  Identities=46%  Similarity=0.790  Sum_probs=144.7

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      ++.|.+-|||+.|.+|.+|+||+.||+.+           ||+|+.|||-|.+||||||||+ |+|+||.||+|.+|.||
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc~~g-----------YYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDE  351 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLCKNG-----------YYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE  351 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHHhcc-----------cccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccc
Confidence            56999999999999999999999999998           9999999999999999999998 89999999999999999


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecccccc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI  173 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~l  173 (361)
                      .. .++|+.+|+|||||+|||||||||||+..++.|||++|++||+|+-|+++|.+|+++++++.+.|..+|.|..+.+.
T Consensus       352 f~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VF  431 (518)
T KOG0883|consen  352 FCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVF  431 (518)
T ss_pred             cCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEe
Confidence            75 79999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCC
Q 018098          174 PEG  176 (361)
Q Consensus       174 ~~~  176 (361)
                      ..+
T Consensus       432 VdP  434 (518)
T KOG0883|consen  432 VDP  434 (518)
T ss_pred             eCc
Confidence            655

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-42  Score=255.98  Aligned_cols=154  Identities=47%  Similarity=0.739  Sum_probs=143.5

Q ss_pred             EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES   85 (361)
Q Consensus         6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (361)
                      |-+.+.     .|+|.||||-+.+|++|+||+.||...           ||+|+.|||-+||||+|+||++ .+|.||.|
T Consensus         3 vtlht~-----~gdikiev~~e~tpktce~~l~~~~~~-----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~s   65 (161)
T KOG0884|consen    3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASD-----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNS   65 (161)
T ss_pred             EEEeec-----cCcEEEEEEecCChhHHHHHHHHhhhh-----------hccceeecCCCCCcEEEeCCCC-CCCCCCcc
Confidence            566655     799999999999999999999999887           9999999999999999999997 68999999


Q ss_pred             cCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC-Ccccc
Q 018098           86 IYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIA  163 (361)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~-~~P~~  163 (361)
                      |+|.+|+||.. -++|+.+|++||||.|||+|+|||||+.+..||||-+|+|||+|++|+|.+++|+.+++++. .+|..
T Consensus        66 iwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~  145 (161)
T KOG0884|consen   66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLN  145 (161)
T ss_pred             ccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccch
Confidence            99999999986 59999999999999999999999999999999999999999999999999999999999886 89999


Q ss_pred             ceEeccccccCCC
Q 018098          164 DVTITDCGEIPEG  176 (361)
Q Consensus       164 ~v~I~~~~~l~~~  176 (361)
                      ++.|.+...-..+
T Consensus       146 ~~~ik~itihanp  158 (161)
T KOG0884|consen  146 DVHIKDITIHANP  158 (161)
T ss_pred             heeeeeeEEecCc
Confidence            9999887665433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-42  Score=309.88  Aligned_cols=150  Identities=55%  Similarity=0.814  Sum_probs=142.8

Q ss_pred             EeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCC
Q 018098           11 SIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLK   90 (361)
Q Consensus        11 ~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   90 (361)
                      +|-.|++|+|.|.||++.||+||+||-..|+.+           ||+|..|||||+|||||+|||. |+|+||.||+|..
T Consensus       407 aiihtt~gdi~~kl~p~ecpktvenf~th~rng-----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~d  474 (558)
T KOG0882|consen  407 AIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG-----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKD  474 (558)
T ss_pred             eEEEecccceEEEecccccchhhhhhhccccCc-----------cccCcchHHhhhhheeecCCCC-CCCCCCccccccc
Confidence            444567999999999999999999999999988           9999999999999999999997 8999999999999


Q ss_pred             CCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098           91 FEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (361)
Q Consensus        91 ~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~  169 (361)
                      |+||.. .|+|++|.+|||||.|||+||||||||+.+.|||||+|+|||+|..||+|++.|+++.++..++|..++.|.+
T Consensus       475 fedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iin  554 (558)
T KOG0882|consen  475 FEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIIN  554 (558)
T ss_pred             chhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEE
Confidence            999986 7999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccc
Q 018098          170 CGE  172 (361)
Q Consensus       170 ~~~  172 (361)
                      ..+
T Consensus       555 isv  557 (558)
T KOG0882|consen  555 ISV  557 (558)
T ss_pred             Eec
Confidence            643

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=1.4e-40  Score=279.36  Aligned_cols=159  Identities=40%  Similarity=0.689  Sum_probs=145.6

Q ss_pred             eEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC
Q 018098            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE   84 (361)
Q Consensus         5 ~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (361)
                      .|.|+++     .|+|+||||.+.+|+||+||+.||+.+           ||+|+.||||+|+|+|||||+. ++|+++.
T Consensus         7 ~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~-----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~   69 (171)
T cd01925           7 KVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG-----------YYDNTIFHRVVPGFIIQGGDPT-GTGTGGE   69 (171)
T ss_pred             EEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC-----------CCCCCEEEEEcCCcEEEccccC-CCCccCc
Confidence            5667665     899999999999999999999999987           9999999999999999999986 6789999


Q ss_pred             ccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEe-ChHHHHHHhccCCCCCCccc
Q 018098           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK-GMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~-g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++||..|++|.. .++|+++|+|+||+.++++++|||||++++.|+||++|+|||+|+. +++++++|+.+.++.++.|.
T Consensus        70 s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~  149 (171)
T cd01925          70 SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPV  149 (171)
T ss_pred             ccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcC
Confidence            999999999976 5789999999999999999999999999999999999999999984 56789999999998888999


Q ss_pred             cceEeccccccCCCCCCC
Q 018098          163 ADVTITDCGEIPEGADDG  180 (361)
Q Consensus       163 ~~v~I~~~~~l~~~~~~~  180 (361)
                      .+++|.+|.++..++++-
T Consensus       150 ~~i~I~~~~i~~~pf~~~  167 (171)
T cd01925         150 YPPKITSVEVLENPFDDI  167 (171)
T ss_pred             CCeEEEEEEEEcCCchhh
Confidence            999999999987766554

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=1.1e-39  Score=277.27  Aligned_cols=152  Identities=32%  Similarity=0.500  Sum_probs=133.3

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +++|.|+++     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+||||||++....+  
T Consensus        28 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~~~--   89 (190)
T PRK10903         28 DPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ--   89 (190)
T ss_pred             CcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEeCCceEEeCCcCCCCC--
Confidence            567777765     899999999999999999999999987           99999999999999999999764322  


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCCC-----CceEEeEEEeChHHHHHHhccCCC
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTG  156 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~g~~vl~~i~~~~~~  156 (361)
                       .+.++.+|++|.....|+.+|+|+||+.+ ||+++|||||++++.++||+     +|+|||+|++|||++++|++++++
T Consensus        90 -~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~  168 (190)
T PRK10903         90 -QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  168 (190)
T ss_pred             -CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCC
Confidence             23346778888766667889999999976 99999999999999999984     899999999999999999999987


Q ss_pred             C----CCccccceEecccccc
Q 018098          157 D----NDCPIADVTITDCGEI  173 (361)
Q Consensus       157 ~----~~~P~~~v~I~~~~~l  173 (361)
                      .    .+.|..+|.|.+|.++
T Consensus       169 ~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        169 DVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             CCCCCCCcccCCeEEEEEEEe
Confidence            6    4689999999998765

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=8.7e-39  Score=265.97  Aligned_cols=144  Identities=35%  Similarity=0.585  Sum_probs=123.8

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+|+||.+.||+||+||++||+.+           ||+|+.||||+|+|+||||++..+.+.   +.++..|++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e   71 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE   71 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhcC-----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence            45899999999999999999999999987           999999999999999999997644332   2246678888


Q ss_pred             ccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCC-------C-CceEEeEEEeChHHHHHHhccCCCCC----Ccc
Q 018098           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLD-------G-KHVVFGRVIKGMGVVRSIEHVMTGDN----DCP  161 (361)
Q Consensus        95 ~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld-------~-~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P  161 (361)
                      .....++.+|+||||+.+ |++++|||||++.+.++||       + +|+|||+|++|||+|++|+.+.++.+    +.|
T Consensus        72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P  151 (164)
T PRK10791         72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP  151 (164)
T ss_pred             ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence            544445589999999986 9999999999999988776       3 79999999999999999999999763    689


Q ss_pred             ccceEeccccc
Q 018098          162 IADVTITDCGE  172 (361)
Q Consensus       162 ~~~v~I~~~~~  172 (361)
                      ..+|.|.++.+
T Consensus       152 ~~~v~I~~~~i  162 (164)
T PRK10791        152 KEDVIIESVTV  162 (164)
T ss_pred             CCCeEEEEEEE
Confidence            99999998754

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=4.3e-38  Score=260.34  Aligned_cols=141  Identities=37%  Similarity=0.523  Sum_probs=123.2

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|+|||||+....+.   ..++.++++|
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e   69 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKG-----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE   69 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence            45899999999999999999999999987           999999999999999999998744322   2346678888


Q ss_pred             ccccCCCCceEEEeecCC-CCCCCcceEEecCCCCCCCC-----CceEEeEEEeChHHHHHHhccCCCCC----Cccccc
Q 018098           95 NFELKHERKGMLSMANAG-PNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIAD  164 (361)
Q Consensus        95 ~~~~~~~~~g~l~~~~~~-~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~g~~vl~~i~~~~~~~~----~~P~~~  164 (361)
                      .....|+++|+|+||+.+ |++++|||||++.+.|+||+     +|+|||+|++||++|++|++++++..    +.|..+
T Consensus        70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~  149 (155)
T cd01920          70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD  149 (155)
T ss_pred             ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence            666667899999999976 89999999999999999995     79999999999999999999999764    578888


Q ss_pred             eEecc
Q 018098          165 VTITD  169 (361)
Q Consensus       165 v~I~~  169 (361)
                      |.|.+
T Consensus       150 v~i~~  154 (155)
T cd01920         150 VIIES  154 (155)
T ss_pred             eEEEE
Confidence            87764

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=5.3e-36  Score=251.90  Aligned_cols=126  Identities=34%  Similarity=0.552  Sum_probs=111.0

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC-------------
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT-------------   81 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~-------------   81 (361)
                      |+.|+|+|+||.+.||+||+||++||+.+           ||+|+.||||+++|||||||+... ++             
T Consensus         4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~   71 (176)
T cd01924           4 TDNGTITIVLDGYNAPVTAGNFVDLVERG-----------FYDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTI   71 (176)
T ss_pred             cccceEEEEEcCCCCCHHHHHHHHHHHhC-----------CcCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccc
Confidence            57999999999999999999999999987           999999999999999999998643 21             


Q ss_pred             --------CCCccCCCCCC-----CCccccCCCCceEEEeecCC--CCCCCcceEEecC-------CCCCCCCCceEEeE
Q 018098           82 --------GGESIYGLKFE-----DENFELKHERKGMLSMANAG--PNTNGSQFFITTT-------RTSHLDGKHVVFGR  139 (361)
Q Consensus        82 --------~~~~~~~~~~~-----~e~~~~~~~~~g~l~~~~~~--~~~~~sqF~I~~~-------~~~~ld~~~~vfG~  139 (361)
                              .+.++|+.++.     +++..+.|+.+|+|+||+.+  |||++|||||++.       +.|+||++|+|||+
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~  151 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY  151 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEE
Confidence                    13356666553     45667889999999999988  6999999999998       78999999999999


Q ss_pred             EEeChHHHHHHhc
Q 018098          140 VIKGMGVVRSIEH  152 (361)
Q Consensus       140 V~~g~~vl~~i~~  152 (361)
                      |++|||+|++|+.
T Consensus       152 VveG~dvl~~I~~  164 (176)
T cd01924         152 VTDGLDILRELKV  164 (176)
T ss_pred             EecCHHHHHhhcC
Confidence            9999999999975

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.2e-35  Score=245.10  Aligned_cols=141  Identities=61%  Similarity=0.944  Sum_probs=128.8

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+|+||.+.+|++|+||++||+++           +|+|+.||||+|+++|||||+....+.+  +.++..+++|
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E   70 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE   70 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence            34799999999999999999999999988           9999999999999999999987543322  4567889999


Q ss_pred             ccccC-CCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEec
Q 018098           95 NFELK-HERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT  168 (361)
Q Consensus        95 ~~~~~-~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~  168 (361)
                      ..... |+++|+|+|++.++++++|||||++.+.|+||++|+|||+|++|++++++|...+++.++.|..+|+|.
T Consensus        71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317          71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            87655 899999999999999999999999999999999999999999999999999999999889999999985

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-36  Score=266.43  Aligned_cols=160  Identities=39%  Similarity=0.681  Sum_probs=146.1

Q ss_pred             eEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC
Q 018098            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE   84 (361)
Q Consensus         5 ~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (361)
                      .|.|.++     .|+|.|||+...||++|.||++||..+           ||+|+.|||++|||.+|||||+ ++|+||.
T Consensus        14 kvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp~-~~gtGge   76 (439)
T KOG0885|consen   14 KVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDPT-GTGTGGE   76 (439)
T ss_pred             eEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCCC-CCCCCcc
Confidence            5666665     899999999999999999999999998           9999999999999999999998 7999999


Q ss_pred             ccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChH--HHHHHhccCCCCCCcc
Q 018098           85 SIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG--VVRSIEHVMTGDNDCP  161 (361)
Q Consensus        85 ~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~--vl~~i~~~~~~~~~~P  161 (361)
                      ||||.+|.+|.. .++++++|+|+|||.+-+.||||||+|++++|+|++++++||+|+ |..  .+..|..+.++.+++|
T Consensus        77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVt-GdtIYn~lri~e~eida~~Rp  155 (439)
T KOG0885|consen   77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVT-GDTIYNMLRISEVEIDADDRP  155 (439)
T ss_pred             ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeec-chhhhhhhhhcccccccccCC
Confidence            999999999975 688999999999999999999999999999999999999999998 443  4567888888888999


Q ss_pred             ccceEeccccccCCCCCCCCC
Q 018098          162 IADVTITDCGEIPEGADDGIS  182 (361)
Q Consensus       162 ~~~v~I~~~~~l~~~~~~~l~  182 (361)
                      ..+..|.++.++..++.+..+
T Consensus       156 ~~p~kI~s~EV~~npFdDI~p  176 (439)
T KOG0885|consen  156 VDPPKIKSVEVLINPFDDIKP  176 (439)
T ss_pred             CCccceeeeEeecCchhhcch
Confidence            999999999999877766544

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=3.1e-35  Score=245.10  Aligned_cols=151  Identities=50%  Similarity=0.816  Sum_probs=131.4

Q ss_pred             EEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC-Cc
Q 018098            7 FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG-ES   85 (361)
Q Consensus         7 ~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~-~~   85 (361)
                      ||+|++++  +|+|+||||.+.||.+|+||++||+.+           +|+|+.||||+|+++||||++....+.+. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~   67 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS   67 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence            78898766  999999999999999999999999987           89999999999999999999875433111 12


Q ss_pred             cCCCCCCCCcc-ccCCCCceEEEeecCC--CCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           86 IYGLKFEDENF-ELKHERKGMLSMANAG--PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        86 ~~~~~~~~e~~-~~~~~~~g~l~~~~~~--~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ..+.++++|.. ...++++|+|+|++.+  +++++|||||++.+.|+||++|+|||+|++|++++++|+..+++.  .|.
T Consensus        68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~  145 (155)
T PF00160_consen   68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPK  145 (155)
T ss_dssp             TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBS
T ss_pred             cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccC
Confidence            33556888874 3444599999999986  899999999999999999999999999999999999999988877  999


Q ss_pred             cceEeccccc
Q 018098          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|+|.+|++
T Consensus       146 ~~v~I~~cgv  155 (155)
T PF00160_consen  146 QDVTISSCGV  155 (155)
T ss_dssp             STEEEEEEEE
T ss_pred             CCeEEEEeEC
Confidence            9999999975

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-34  Score=253.44  Aligned_cols=158  Identities=38%  Similarity=0.666  Sum_probs=146.0

Q ss_pred             EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES   85 (361)
Q Consensus         6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (361)
                      |.++++     +|+|||+||-+.+|.||.||++||+-+           ||+.+.||.|..+|.+|.|||+ |+|.||.|
T Consensus         3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K-----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~s   65 (479)
T KOG0415|consen    3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK-----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGES   65 (479)
T ss_pred             EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh-----------hcccceeeeccccceeecCCCC-CCCCCcce
Confidence            677666     899999999999999999999999998           9999999999999999999998 69999999


Q ss_pred             cCCC-------CCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCC-CCCCCCceEEeEEEeChHHHHHHhccCCC
Q 018098           86 IYGL-------KFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRT-SHLDGKHVVFGRVIKGMGVVRSIEHVMTG  156 (361)
Q Consensus        86 ~~~~-------~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~~~~~  156 (361)
                      |||.       .|+.|.. .++|.+.|+|||++.|.|.+|||||||++.. ..|||+|+|||+|.+|+++|.+|...-++
T Consensus        66 i~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD  145 (479)
T KOG0415|consen   66 IYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVD  145 (479)
T ss_pred             eeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcC
Confidence            9854       3666654 6999999999999999999999999999875 58999999999999999999999999999


Q ss_pred             CCCccccceEeccccccCCCCCCC
Q 018098          157 DNDCPIADVTITDCGEIPEGADDG  180 (361)
Q Consensus       157 ~~~~P~~~v~I~~~~~l~~~~~~~  180 (361)
                      ....|..+|+|...-++..+++++
T Consensus       146 ~~~rPykdIRI~HTiiLdDPFddp  169 (479)
T KOG0415|consen  146 PKNRPYKDIRIKHTIILDDPFDDP  169 (479)
T ss_pred             CCCCcccceeeeeeEEecCCCCCc
Confidence            999999999999999998887766

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.4e-25  Score=201.01  Aligned_cols=159  Identities=35%  Similarity=0.474  Sum_probs=147.1

Q ss_pred             CCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC
Q 018098          200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD  279 (361)
Q Consensus       200 ~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  279 (361)
                      .+....++++..|...++.||.+|+.|+|..|...|++|++++.+....+   +++..........+++|+|.||+++++
T Consensus       196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~---~ee~~~~~~~k~~~~lNlA~c~lKl~~  272 (397)
T KOG0543|consen  196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFD---EEEQKKAEALKLACHLNLAACYLKLKE  272 (397)
T ss_pred             ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCC---HHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence            36667778999999999999999999999999999999999887653333   355556777888999999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      |.+|+..|+++|.++|.|+||+||+|+|+..+|+|+.|+.+|+++++++|+|+++...+..+..+++++.+++++.|++|
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 018098          360 FQ  361 (361)
Q Consensus       360 f~  361 (361)
                      |+
T Consensus       353 F~  354 (397)
T KOG0543|consen  353 FA  354 (397)
T ss_pred             hh
Confidence            95

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=4e-22  Score=175.02  Aligned_cols=125  Identities=34%  Similarity=0.485  Sum_probs=119.9

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      +....|+.++..||.+++.++|.+|+.+|++||.                  ++|.++..|+|+|.+|.+||+|+.|+++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~------------------l~P~nAVyycNRAAAy~~Lg~~~~AVkD  137 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE------------------LDPTNAVYYCNRAAAYSKLGEYEDAVKD  137 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------cCCCcchHHHHHHHHHHHhcchHHHHHH
Confidence            5666899999999999999999999999999999                  9999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |..||.+||.++|+|.|+|.+|+.+|++++|++.|++||+++|+|+.++..|..++..+.+.+
T Consensus       138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999988877654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.3e-21  Score=162.57  Aligned_cols=161  Identities=29%  Similarity=0.333  Sum_probs=154.3

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      |.++.+++++....+...||.+|+.|+|.+|..+|..|+..+..+...+.+.+.+|..++....+++.|.++|++..++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            77888999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      .++++.|..+|..+|.|.||||++|.|+....+.++|.++|.++++++|.- +.+...+..+..++.+.++.++-.+++|
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km  326 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM  326 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999984 5788899999999999999999999999


Q ss_pred             cC
Q 018098          360 FQ  361 (361)
Q Consensus       360 f~  361 (361)
                      |+
T Consensus       327 fs  328 (329)
T KOG0545|consen  327 FS  328 (329)
T ss_pred             cC
Confidence            96

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=8.3e-19  Score=145.09  Aligned_cols=136  Identities=29%  Similarity=0.392  Sum_probs=123.9

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al  284 (361)
                      ....+..+..++..||.+|+.|+|.+|...|..||.+++.+             .......+|.|+|.|.++++.|+.||
T Consensus        88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-------------~~e~rsIly~Nraaa~iKl~k~e~aI  154 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPST-------------STEERSILYSNRAAALIKLRKWESAI  154 (271)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-------------cHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence            33446679999999999999999999999999999988765             45567889999999999999999999


Q ss_pred             HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      .+|.+||+++|.+.+|+.|||.+|..+..|++|+.+|++.++++|....++..+.++...+.+..++-|
T Consensus       155 ~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  155 EDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888877666544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=8.3e-17  Score=150.90  Aligned_cols=117  Identities=28%  Similarity=0.499  Sum_probs=112.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+...+..||.+|+.|+|..|+.+|++||.                  .+|.+..+|.|+|.||.+++.+..|+.+|+++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIK------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHh------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            477888999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      |+++|++.++|+|.|.++..+.+|+.|++.|.++++++|++.++...+.+|...+
T Consensus       419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999987764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.68  E-value=6.3e-17  Score=144.03  Aligned_cols=121  Identities=27%  Similarity=0.254  Sum_probs=114.8

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al  284 (361)
                      .+++++.+..+++.||.||++|.|++||.||.+++.                  +.|.+...+.|+|.+|++++.|..|.
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia------------------~~P~NpV~~~NRA~AYlk~K~FA~AE  151 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA------------------VYPHNPVYHINRALAYLKQKSFAQAE  151 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc------------------cCCCCccchhhHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999999999999                  88989999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      .+|+.|+.+|..+.|||.|||.+...+|...+|..+++.+|+|.|++.+..+.++.+..
T Consensus       152 ~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  152 EDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999988888887755

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=8.1e-16  Score=142.57  Aligned_cols=128  Identities=23%  Similarity=0.298  Sum_probs=109.0

Q ss_pred             cCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098          202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       202 ~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      .+..+++.+.|..++.+||.+|+.|+|++||.+|++||+                  +.|.-+..|.|+|.||..+|+|+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~------------------l~p~epiFYsNraAcY~~lgd~~  166 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE------------------LCPDEPIFYSNRAACYESLGDWE  166 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh------------------cCCCCchhhhhHHHHHHHHhhHH
Confidence            455677788999999999999999999999999999999                  66666789999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~l~~~~~~~~~~  348 (361)
                      +.+++|++||+++|+.+||++|||.++..+|++++|+.+..-. .+..  +|..+.-.+.++.......
T Consensus       167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~  234 (606)
T KOG0547|consen  167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMK  234 (606)
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998754 4433  3555555555554444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=2.1e-15  Score=123.74  Aligned_cols=117  Identities=13%  Similarity=0.159  Sum_probs=110.7

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+...|..++..|+|++|+..|++++.                  ++|.+..+|.++|.++..+|++++|+..|+++++
T Consensus        25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         25 ETVYASGYASWQEGDYSRAVIDFSWLVM------------------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3466789999999999999999999999                  8899999999999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ++|.++.+++++|.++..+|++++|+..|++++++.|+++..+..++.++..++.
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888777654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.64  E-value=2.3e-15  Score=141.90  Aligned_cols=118  Identities=25%  Similarity=0.438  Sum_probs=112.6

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..++..|+.+|..|+|++|+.+|++||+                  ++|.+..+|+++|.||+++|++++|+.++++||.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~------------------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~   64 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAID------------------LDPNNAELYADRAQANIKLGNFTEAVADANKAIE   64 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4577889999999999999999999999                  8888899999999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++|.++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..+..++...
T Consensus        65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999998888654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=4.2e-15  Score=135.45  Aligned_cols=134  Identities=27%  Similarity=0.440  Sum_probs=118.3

Q ss_pred             chHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      +..-..+..+.++..||.+|+.|+|..|.++|+.||.+-+.              -...++.+|.|+|.+..++|+..+|
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~ea  306 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREA  306 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhh
Confidence            34445567888999999999999999999999999983321              2335678999999999999999999


Q ss_pred             HHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          284 LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       284 l~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.+|+.|+.+||...|++.++|.|+..+++|++|.++|++|+++..+ .+++..+.+++..+++.+++.
T Consensus       307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD  374 (486)
T ss_pred             hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999866 889999999999888776643

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=4.9e-15  Score=139.08  Aligned_cols=113  Identities=28%  Similarity=0.420  Sum_probs=109.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +...+..||.+|..|+|+.|+.+|++||.                  ++|.+..+|.|++.||.++++|++|+++..+.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            45678899999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +++|+++|+|.|+|.++..+|+|++|+..|++.|+.+|+|+.....+.++.
T Consensus        64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999999999988

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3e-14  Score=126.59  Aligned_cols=107  Identities=26%  Similarity=0.412  Sum_probs=95.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|..+++.||.+|+.++|..|+..|+++|..              .......++.+|.|||.|.+.+|+|..||.+|++|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--------------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKK--------------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--------------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999981              11134467889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      +.++|++.|+++|-|.|++.+.++++|..+++..++++-..
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999999999999999999999999998888877765433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.55  E-value=1.2e-13  Score=112.13  Aligned_cols=117  Identities=11%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ..+.++..|..++..|++++|+..|+-...                  ++|.+...|+|||.|+..+|+|++|+..|.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456789999999999999999999999998                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      +.++|+++.++++.|.+++.+|+.+.|.+.|+.++.+.-.++.......+++..+
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999855554444444444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=2.1e-13  Score=110.49  Aligned_cols=118  Identities=15%  Similarity=0.258  Sum_probs=109.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+.....+|..++..|++++|+..|++++.                  .+|.+..++.++|.++.+++++++|+..++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA------------------YDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356688899999999999999999999998                  77888999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +.++|+++..++.+|.++..+|++++|+..|+++++++|++.........+...++
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999887777777766554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.48  E-value=8.1e-14  Score=132.63  Aligned_cols=125  Identities=22%  Similarity=0.206  Sum_probs=111.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      -+.++.++||.+-..+.|++|+.+|.+|+.                  +.|+.+.++.|+|.+|..+|..+.||..|.+|
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~------------------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra  312 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALN------------------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA  312 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHh------------------cCCcchhhccceEEEEeccccHHHHHHHHHHH
Confidence            477899999999999999999999999998                  88888889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++|+.+.||.++|.++...|+..+|.++|.+|+.+.|+.++...+|+.++.+....+.+-+
T Consensus       313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~  375 (966)
T KOG4626|consen  313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR  375 (966)
T ss_pred             HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence            999999999999999999999999999999999999999999999999998888776665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=8.6e-13  Score=133.78  Aligned_cols=113  Identities=24%  Similarity=0.329  Sum_probs=103.1

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+.++....+..+++.|+.+++.|+|++|+.+|++++.                  +.|. ...|.|+|.||.++|+|
T Consensus       116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~------------------~~p~-~~~~~n~a~~~~~l~~~  176 (615)
T TIGR00990       116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE------------------CKPD-PVYYSNRAACHNALGDW  176 (615)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCc-hHHHHHHHHHHHHhCCH
Confidence            5566777778899999999999999999999999999998                  4453 45799999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ++|+.+|++||+++|++.++|+++|.+|..+|++++|+.+|..++.+++.+.
T Consensus       177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999999999999999999999888876544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=9.5e-13  Score=121.26  Aligned_cols=105  Identities=14%  Similarity=0.061  Sum_probs=101.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ++|.+..+|+++|.++..+|++++|+..++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467799999999999999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      ++++|++..+++++|.++...|++++|+++|+++++++|+++.
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999873

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.44  E-value=4.7e-13  Score=127.53  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|..+.+|.|+|.+|-.+|+...|++.+.+||.++|..+.|+.++|.+|...|+..+|++.|+.|+++.|+.+++..++
T Consensus       417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl  496 (966)
T KOG4626|consen  417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL  496 (966)
T ss_pred             cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence            55555566666666666666666666666666666666666666666666666666666666666666666655555555


Q ss_pred             HHHHHH
Q 018098          339 AVAKKK  344 (361)
Q Consensus       339 ~~~~~~  344 (361)
                      ..+..-
T Consensus       497 lh~lq~  502 (966)
T KOG4626|consen  497 LHCLQI  502 (966)
T ss_pred             HHHHHH
Confidence            554433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.42  E-value=1.7e-13  Score=127.86  Aligned_cols=121  Identities=30%  Similarity=0.422  Sum_probs=116.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|..++..++.+++.+.|+.|+..|.+||+                  ++|+.+..+.|+|.++++.++|..|+.++.+|
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~------------------ldpnca~~~anRa~a~lK~e~~~~Al~Da~ka   64 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE------------------LDPNCAIYFANRALAHLKVESFGGALHDALKA   64 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh------------------cCCcceeeechhhhhheeechhhhHHHHHHhh
Confidence            467788999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |+++|...|+|+|+|.+++.++++.+|+.+|++...+.|+++.+.+.+.++...+.+++
T Consensus        65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998887753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.40  E-value=2.6e-12  Score=111.07  Aligned_cols=112  Identities=20%  Similarity=0.253  Sum_probs=101.8

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH-HhcCC--hHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK-LKLGD--LKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~~Al~  285 (361)
                      ...++.|..+|..+...|++++|+..|++|++                  +.|.+..++.++|.++ ...|+  +++|+.
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~------------------l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ------------------LRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            34578899999999999999999999999999                  8899999999999985 67787  599999


Q ss_pred             HHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .++++++++|+++.+++.+|.++..+|++++|+..++++++++|.+..-...+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            99999999999999999999999999999999999999999999765444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.37  E-value=6.1e-12  Score=127.57  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|++++.                  ++|....+|.++|.++..+|++++|+.+++++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~------------------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  391 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE------------------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKA  391 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            456788889999999999999999999998                  44444444555555555555555555555555


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ++++|+++.+++.+|.++..+|++++|+.+|+++++++|++...+..++.+...+++
T Consensus       392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence            555555555555555555555555555555555555555554444444444444333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.7e-12  Score=110.63  Aligned_cols=116  Identities=28%  Similarity=0.380  Sum_probs=105.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+++.||.+|..++|+.|+.+|.+||.                  ++|+.+..|.|+|.||+++++|+.+..+|.+|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~------------------~nP~~~~Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC------------------INPTVASYYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHh------------------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            578899999999999999999999999998                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE---P--NDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P--~~~~~~~~l~~~~~~  344 (361)
                      +.++|+.++++|-+|++.+....|++|+..+.+|..+.   |  .-.++.+.|..++..
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            99999999999999999999999999999999997663   2  234677777776543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.34  E-value=3.2e-12  Score=90.94  Aligned_cols=66  Identities=36%  Similarity=0.531  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEP  329 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P  329 (361)
                      +..|.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999999999999999999 79999999999999998

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=6.6e-11  Score=109.73  Aligned_cols=123  Identities=16%  Similarity=0.248  Sum_probs=85.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ..+|--+|..+...++-..|++.|++|++                  ++|.+-.+|+.+|++|.-++...-|+-++++|+
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd------------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~  425 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD------------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL  425 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHh------------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence            44455556666666666666666666666                  666677777777777777777777777777777


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+-|+++..|.-+|.+|..+++.++|+.+|++|+.+..-+..+...|+++.+++++.+++.
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa  486 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA  486 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence            7777777777777777777777777777777777776666677777777777777665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.29  E-value=3.4e-11  Score=94.82  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..++..|..+++.|+|++|+..|.+++...+               -++....+++.+|.++.+.+++++|+..+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYP---------------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45688899999999999999999999997211               112235688999999999999999999999999


Q ss_pred             hcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       292 ~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ..+|++   +.+++.+|.++..++++++|+..++++++..|++..+....
T Consensus        67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999886   67899999999999999999999999999999987765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.29  E-value=3.7e-11  Score=98.58  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc
Q 018098          232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       232 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l  311 (361)
                      ..+|+++++                  ++|..   +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+
T Consensus        13 ~~~~~~al~------------------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLS------------------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHH------------------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            457888888                  66664   667999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      |++++|+..|+++++++|++..++..++.+...+++.+++...
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~  114 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA  114 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999988887776544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=4.9e-12  Score=121.81  Aligned_cols=143  Identities=19%  Similarity=0.175  Sum_probs=116.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc-cc-----cccCCCCccch----------hHHHHHHHHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD-IC-----WEKEGIDEGKS----------SSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~-~~-----~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~  274 (361)
                      ..+.|...||.+.-+++++.||++|++|+.+-+ +.     .-.+-...++.          ...+|..-.+|+.+|.+|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            478899999999999999999999999998655 11     11111111111          234677778899999999


Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++++++.|.-++++|+.++|.|.......|..+.++|+.++|+..|++|+.++|.|+..+...+.+.-.+.++.++.+
T Consensus       500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888888888888887776554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.5e-11  Score=111.54  Aligned_cols=122  Identities=21%  Similarity=0.224  Sum_probs=115.5

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ..-.||.+.-+++-++|+.+|++||+                  ++|....+|..+|.-|+++++-..|++.|.+|++++
T Consensus       333 CCiIaNYYSlr~eHEKAv~YFkRALk------------------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  333 CCIIANYYSLRSEHEKAVMYFKRALK------------------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             eeeehhHHHHHHhHHHHHHHHHHHHh------------------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence            34569999999999999999999999                  999999999999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      |.+.+|||.+|++|..++=..=|+-+|++|+++-|+|+.+|..|++|..++.+.+++.|-
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC  454 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC  454 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888776653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.26  E-value=6.1e-11  Score=124.25  Aligned_cols=124  Identities=14%  Similarity=0.055  Sum_probs=87.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+.+.|++++|+..|+++++                  ++|.+..++.++|.++..+|++++|+..+++|+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~------------------l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALE------------------LEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34556666666677777777777777766                  666677777777777777777777777777777


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++|+++.+++++|.++..+|++++|+..|+++++++|++..+....+.+..+....++..+
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777666666655554444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.26  E-value=6.4e-11  Score=106.13  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=106.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++.+.++|+.++..|+|..|+.+|..|++                  .+|.+..+++.+|.+|+.+|+-..|+.+++++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence            477899999999999999999999999999                  99999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG---IKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~---~~~~l~~~~~~  344 (361)
                      |++.|+...|...+|.+++.+|++++|.++|...++.+|++..   ++..++.+...
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~  155 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH  155 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999997654   44444444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=4.1e-11  Score=115.52  Aligned_cols=127  Identities=16%  Similarity=0.155  Sum_probs=119.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .-.+|+-+|.++.++++|+.|.-+|++|+.                  ++|.+..+...++..+.++|+.++|+..+++|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~------------------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A  549 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE------------------INPSNSVILCHIGRIQHQLKRKDKALQLYEKA  549 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc------------------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence            356789999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +.+||.++-..|.+|.++..+++|++|+..+++..++.|++..+...++++..+++...-+-+.+
T Consensus       550 ~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f  614 (638)
T KOG1126|consen  550 IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF  614 (638)
T ss_pred             HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999998876665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=1.9e-11  Score=86.88  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=64.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~  289 (361)
                      .|..+..+|..++..|+|++|+.+|+++++                  ++|.+..+|+++|.||.++| ++.+|+.++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~------------------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE------------------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH------------------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            478899999999999999999999999999                  89999999999999999999 79999999999


Q ss_pred             HhhcCC
Q 018098          290 AMRDGD  295 (361)
Q Consensus       290 al~~~p  295 (361)
                      +|+++|
T Consensus        64 al~l~P   69 (69)
T PF13414_consen   64 ALKLDP   69 (69)
T ss_dssp             HHHHST
T ss_pred             HHHcCc
Confidence            999998

...

>PRK15331 chaperone protein SicA; Provisional

Probab=99.23  E-value=9.2e-11  Score=95.85  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=103.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ..+.++..|..+|..|+|++|...|+-...                  +++.+...|..||.|+..+++|++|+..|..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------------------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------------------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788899999999999999999998877                  78888889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ..++++++...|+.|+||+.+|+.+.|..+|+.+++ .|.+..++..-......++.
T Consensus        98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331         98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999998 57766665544444444443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=9.9e-12  Score=111.37  Aligned_cols=157  Identities=22%  Similarity=0.258  Sum_probs=129.1

Q ss_pred             CccccceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHH
Q 018098          159 DCPIADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKA  238 (361)
Q Consensus       159 ~~P~~~v~I~~~~~l~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~a  238 (361)
                      ..|..+..|...+++....+.++.    .+|.          .....++.++.|...+..+..++..|.+++|++.|..|
T Consensus        75 s~~~~~~~~d~egviepd~d~pq~----MGds----------~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~a  140 (377)
T KOG1308|consen   75 SSPESDLEIDGEGVIEPDTDAPQE----MGDS----------NAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSA  140 (377)
T ss_pred             CCCCcchhccCCCccccCCCcchh----hchh----------hhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccc
Confidence            445566677777777544443333    3443          23457788888999999999999999999999999999


Q ss_pred             HhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHH
Q 018098          239 LRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~  318 (361)
                      +.                  ++|....+|.+++.++++++++..|+.+|..||.++|+..+-|-.++.+...+|+|++|.
T Consensus       141 i~------------------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  141 IE------------------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             cc------------------cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            99                  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          319 ESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       319 ~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      .+|..+++++- ++++-..+.++....+..
T Consensus       203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  203 HDLALACKLDY-DEANSATLKEVFPNAGKI  231 (377)
T ss_pred             HHHHHHHhccc-cHHHHHHHHHhccchhhh
Confidence            99999999984 455555555554444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=9.4e-11  Score=117.27  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ++|.+..++..+|.++..+|++++|+..+++|++++|+++.+++.+|.++..+|++++|+..|+++++++|.+.
T Consensus       333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            44444444444555544455555555555555555555555555555555555555555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.22  E-value=1.1e-10  Score=118.05  Aligned_cols=125  Identities=9%  Similarity=0.050  Sum_probs=118.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++.+..+|.+....|++++|+..+..++.                  +.|.+..++.+++.++.+++++++|+..++++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ------------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            578899999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +..+|+++.+++.+|.++.++|++++|++.|++++..+|+++.++..++.+...+.+.+++..
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~  209 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD  209 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887766553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=1.5e-10  Score=97.98  Aligned_cols=109  Identities=22%  Similarity=0.206  Sum_probs=95.3

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      ....+..+..+|..+...|+|++|+.+|++++++.+               ..+....++.++|.++.++|++++|+..+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~   95 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---------------DPNDRSYILYNMGIIYASNGEHDKALEYY   95 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------ccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445688899999999999999999999999998321               01123568999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALND--------------VDAAVESFEKALKLEPND  331 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~P~~  331 (361)
                      .+++.++|.+..++..+|.++..+|+              +++|++.+++++.++|++
T Consensus        96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999999999999888              688999999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=1.8e-10  Score=98.17  Aligned_cols=118  Identities=22%  Similarity=0.137  Sum_probs=81.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+.+...+|..++..|++..|....++||+                  .+|....+|.-||..|.++|+.+.|-+.|.+
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~------------------~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk   94 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALE------------------HDPSYYLAHLVRAHYYQKLGENDLADESYRK   94 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence            3677888899999999999999999999998                  6777777777777777777777777777777


Q ss_pred             HhhcCCCchh------------------------------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          290 AMRDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       290 al~~~p~~~k------------------------------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      |+.++|++..                                    .+-++|.|.+..|+++.|..+|+++++++|+++.
T Consensus        95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063          95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence            7777776644                                    4455555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 018098          334 IKKELAVAKKKI  345 (361)
Q Consensus       334 ~~~~l~~~~~~~  345 (361)
                      ....+...+-.-
T Consensus       175 ~~l~~a~~~~~~  186 (250)
T COG3063         175 ALLELARLHYKA  186 (250)
T ss_pred             HHHHHHHHHHhc
Confidence            555544444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=3.3e-11  Score=114.55  Aligned_cols=120  Identities=16%  Similarity=0.176  Sum_probs=107.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++.+..+|..|+-.|+|++|+.+|+.||.                  .+|.+..+|+.||..+..-.+..+||..|++|
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------------------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------------------VKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHh------------------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            366777899999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----------DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~~~  348 (361)
                      |.+.|..+.+.|++|.+++.+|.|++|+.+|-.||.+.+.          +..+|..|..+...+.+.
T Consensus       491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS  558 (579)
T ss_pred             HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999999875          134777777665554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.21  E-value=2e-10  Score=99.29  Aligned_cols=112  Identities=17%  Similarity=0.117  Sum_probs=102.1

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      .++.++++..++++++                  .+|.+..+|.++|.+|..+|++++|+..+++|++++|+++.+++.+
T Consensus        52 ~~~~~~~i~~l~~~L~------------------~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         52 QQTPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             chhHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5677888888888888                  8899999999999999999999999999999999999999999999


Q ss_pred             HHHH-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          305 GQAY-MALND--VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       305 a~a~-~~l~~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      |.++ ...|+  +++|.+.++++++++|++..++..++.+....++.+++...
T Consensus       114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~  166 (198)
T PRK10370        114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL  166 (198)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence            9985 67787  59999999999999999999999999999888888776543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.4e-10  Score=108.17  Aligned_cols=124  Identities=19%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..|+++.-.|..+|-.|++-.|.+.++++|.                  ++|....+|..||.+|+...+-++...++++
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~------------------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~  385 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIK------------------LDPAFNSLYIKRAAAYADENQSEKMWKDFNK  385 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHh------------------cCcccchHHHHHHHHHhhhhccHHHHHHHHH
Confidence            3588899999999999999999999999999                  7777777788888888888888888888888


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      |..+||.|+..||.||+.++-+++|++|+++|++++.|+|++.-.+..++-+..+..+..+.
T Consensus       386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~  447 (606)
T KOG0547|consen  386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES  447 (606)
T ss_pred             HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888877666666666555544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.19  E-value=1.9e-10  Score=115.15  Aligned_cols=131  Identities=11%  Similarity=-0.056  Sum_probs=104.9

Q ss_pred             hhhHHHHHHHHHHHHhhhccccc-----------cCCCCcc-----chhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWE-----------KEGIDEG-----KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+++++|+..+++|+++-+....           ......+     ....++|.+..+++++|.++..+|++++|+..++
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45689999999999986432100           0111111     1135788888999999999999999999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      ++++++|.++.+++.++.+++.+|++++|+..++++++.+ |+++..+..++.+...+++.+++....
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999888888888888999999999999999885 788888999999988888777666543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.19  E-value=1.2e-10  Score=86.28  Aligned_cols=99  Identities=40%  Similarity=0.569  Sum_probs=90.4

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .+..+|..++..|++++|+..++++++                  ..|....++.++|.++...+++++|+..+++++.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALE------------------LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467788999999999999999999998                  44555578999999999999999999999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      .|.+..+++.+|.++..+|++++|...+.++++++|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999998874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.18  E-value=8.4e-11  Score=87.10  Aligned_cols=81  Identities=22%  Similarity=0.361  Sum_probs=72.3

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~  302 (361)
                      .|+|+.|+..|+++++                  ..|.  ....++++|.||+++|+|++|+..+++ +..+|.+....+
T Consensus         2 ~~~y~~Ai~~~~k~~~------------------~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE------------------LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHH------------------HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence            6899999999999998                  5552  566788899999999999999999999 999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 018098          303 RQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       303 ~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      .+|.++..+|+|++|+..|+++
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.17  E-value=6e-10  Score=97.45  Aligned_cols=122  Identities=19%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..++++++                  ..|....++..+|.++..+|++++|+..++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   91 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALE------------------HDPDDYLAYLALALYYQQLGELEKAEDSFRRA   91 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356677777788888888888888887776                  33333444444455555555555555555555


Q ss_pred             hhcCCCchh------------------------------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          291 MRDGDDNVK------------------------------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       291 l~~~p~~~k------------------------------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      ++++|.+..                                    .++.+|.++..+|++++|...|+++++.+|++...
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  171 (234)
T TIGR02521        92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES  171 (234)
T ss_pred             HhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence            544444444                                    45555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          335 KKELAVAKKKIHERRE  350 (361)
Q Consensus       335 ~~~l~~~~~~~~~~~~  350 (361)
                      +..++.+....++.++
T Consensus       172 ~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       172 LLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHHHHHHHcCCHHH
Confidence            5555555555444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=5.7e-10  Score=97.58  Aligned_cols=91  Identities=13%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      .....+.++|.++..+|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999888888888888


Q ss_pred             HHHHHHHHHHH
Q 018098          342 KKKIHERREQE  352 (361)
Q Consensus       342 ~~~~~~~~~~~  352 (361)
                      ....++.+++.
T Consensus       213 ~~~~~~~~~a~  223 (234)
T TIGR02521       213 ARALGDVAAAQ  223 (234)
T ss_pred             HHHHhhHHHHH
Confidence            77766665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.16  E-value=3.7e-10  Score=118.48  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=99.7

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      .|++++|+..|+++++                  ++|. ..++.++|.++.++|++++|+..+.+++.++|+++.++.++
T Consensus       589 ~Gr~~eAl~~~~~AL~------------------l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL  649 (987)
T PRK09782        589 PGQPELALNDLTRSLN------------------IAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL  649 (987)
T ss_pred             CCCHHHHHHHHHHHHH------------------hCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3677777777777776                  6675 78899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       305 a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |.++..+|++++|+..|+++++++|+++.++..++.+...+++.+++..
T Consensus       650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999999999999999888776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.15  E-value=1.8e-10  Score=80.87  Aligned_cols=65  Identities=25%  Similarity=0.383  Sum_probs=60.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36789999999999999999999999999999999999999999999999999999999999985

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=9.6e-10  Score=97.76  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=98.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|++++...+               .++....+++++|.++..++++++|+..++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP---------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            467889999999999999999999999998221               12234468899999999999999999999999


Q ss_pred             hhcCCCchh---hHhHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          291 MRDGDDNVK---ALFRQGQAYMAL--------NDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       291 l~~~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      ++..|+++.   +++.+|.++..+        |++++|+..|+++++.+|++......+..
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            999998877   799999999886        89999999999999999998766554433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.12  E-value=3.1e-10  Score=103.74  Aligned_cols=126  Identities=24%  Similarity=0.221  Sum_probs=103.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..+.+.|++++|++.|++|++                  .+|.+..+...++.++...|+++++...+...
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~  206 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALE------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRL  206 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            456778899999999999999999999999                  99999999999999999999999999999888


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      ....|.++..+..+|.++..+|++++|+..|+++++.+|+|+.+...++.+....++.+++.+-
T Consensus       207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~  270 (280)
T PF13429_consen  207 LKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL  270 (280)
T ss_dssp             HHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred             HHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888999999999999999999999999999999999999999999999999988887776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.12  E-value=6e-10  Score=90.07  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .+|....+...+|.++...+++++|+..+++++.++|.++.+++++|.++..+|++++|+..|+++++++|.+...+..+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            77888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+....++.+++.+
T Consensus        92 a~~~~~~g~~~~A~~  106 (135)
T TIGR02552        92 AECLLALGEPESALK  106 (135)
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999888877766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=8e-10  Score=93.13  Aligned_cols=107  Identities=21%  Similarity=0.141  Sum_probs=90.2

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+...|..+...|+|++|+..|++++.+..               ..+....++.|+|.++..+|++++|+..|.+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---------------~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---------------DPYDRSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3688899999999999999999999999998321               1112456899999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCC
Q 018098          290 AMRDGDDNVKALFRQGQAYM-------ALNDVD-------AAVESFEKALKLEPND  331 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~P~~  331 (361)
                      ++.++|.+..++..+|.++.       .+|+++       +|+..|++++.++|.+
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999998       777876       5666666778888864

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=6.9e-10  Score=96.49  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=114.2

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+...|..++..|+|.+|+..+.++.+                  +.|.+..+|+.+|.+|.++|++++|...|.+++
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~------------------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl  161 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAAR------------------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQAL  161 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhc------------------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence            34455699999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.|.++.+..++|..|.-.|+++.|...+..+...-+.+..+..+++.+.....+..++++
T Consensus       162 ~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         162 ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            99999999999999999999999999999999998888899999999999877776665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.1e-10  Score=105.70  Aligned_cols=122  Identities=22%  Similarity=0.266  Sum_probs=106.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .-.+.++|...|..+.|.+|+.+|++++..++...++           .+...+.+.|||.+|.++++|++||.+++++|
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-----------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-----------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-----------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567889999999999999999999999755433111           11466789999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      .+.|.++.++-..|.+|.-+|+++.|+..|.+++-+.|+|..+...|+.+-..
T Consensus       483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998888888866544

>PLN02789 farnesyltranstransferase

Probab=99.09  E-value=1.6e-09  Score=100.21  Aligned_cols=117  Identities=12%  Similarity=-0.027  Sum_probs=105.2

Q ss_pred             hhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh--HHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL--KGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~Al~~~  287 (361)
                      ...++..+|..+...+ ++++|+..+.+++.                  .+|.+..+|++++.++.++++.  ++++..+
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~------------------~npknyqaW~~R~~~l~~l~~~~~~~el~~~  131 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAE------------------DNPKNYQIWHHRRWLAEKLGPDAANKELEFT  131 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHH------------------HCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence            4567778888888887 68999999999998                  8889999999999999999874  7889999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      +++|+++|.|..||+.++.++..+|+|++|++++.++++++|.|..++..+..+...+
T Consensus       132 ~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999888876544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.09  E-value=1.7e-09  Score=99.69  Aligned_cols=114  Identities=18%  Similarity=0.088  Sum_probs=98.7

Q ss_pred             hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (361)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a  305 (361)
                      ++.+.++..+.++|.-.+              ...+.....|+++|.+|..+|++++|+..++++++++|+++.+|+.+|
T Consensus        40 ~~~e~~i~~~~~~l~~~~--------------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  105 (296)
T PRK11189         40 LQQEVILARLNQILASRD--------------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG  105 (296)
T ss_pred             hHHHHHHHHHHHHHcccc--------------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            466888999999886211              023355778999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       306 ~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      .++..+|++++|+..|+++++++|++..++..++.+....++.+++.+
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~  153 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD  153 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999998877766665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.08  E-value=1e-09  Score=111.80  Aligned_cols=117  Identities=14%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH----HHHHHHHHhhc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG----ALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----Al~~~~~al~~  293 (361)
                      .|..+...|++++|+..|.++++                  ..|....++.++|.++..+|++++    |+..|++++++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~------------------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA------------------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            35666777888888888888877                  455566677777777777777764    67777777777


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|+++.++..+|.++..+|++++|+..++++++++|+++.++..++.+....++..++.
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            77777777777777777777777777777777777777777777776666655554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.07  E-value=1.2e-09  Score=111.40  Aligned_cols=123  Identities=15%  Similarity=0.126  Sum_probs=108.9

Q ss_pred             hHHHHHhcchhHHhhhHHH----HHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKM----ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      +..+..+|..++..|++++    |+..|+++++                  ++|.+..++.++|.++.++|++++|+..+
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~l~~~g~~~eA~~~l  307 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ------------------FNSDNVRIVTLYADALIRTGQNEKAIPLL  307 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5567788999999999996    8999999999                  88888999999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++++.++|+++.+++.+|.++..+|++++|+..|+++++.+|++......++.+....++.+++.
T Consensus       308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999998776666666666555554443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=7.4e-10  Score=99.41  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=104.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +........+......++|.++++.+++.++--+          +    ..+.....+..++.|+.+-+++.+||+.|.+
T Consensus       267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep----------~----~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP----------E----ETMIRYNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC----------c----ccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence            3455555667777788899999999999987111          0    1122334556678999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      +|.++|+++.++..+|.+|+.-..|+.||.+|++|.+++|+|..++.-+..+++..++.
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs  391 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS  391 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=9.3e-10  Score=97.47  Aligned_cols=92  Identities=22%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +-+-|.-.++-++|++|+..|++||+++|.|+-.|.+||.+|..+|.|+.|++++++|+.+||+...++..|+.++..+.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            45566777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 018098          347 ERREQEKKQYRKM  359 (361)
Q Consensus       347 ~~~~~~k~~~~~~  359 (361)
                      +.+++... |+|-
T Consensus       164 k~~~A~~a-ykKa  175 (304)
T KOG0553|consen  164 KYEEAIEA-YKKA  175 (304)
T ss_pred             cHHHHHHH-HHhh
Confidence            88888777 6653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.02  E-value=7.2e-09  Score=80.65  Aligned_cols=106  Identities=25%  Similarity=0.267  Sum_probs=95.1

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ..++....+--.|..+...|+.+.|++.|.++|.                  +-|..+.+|+|+|+++.-.|+.++|+.+
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHH
Confidence            4455667777789999999999999999999999                  7788899999999999999999999999


Q ss_pred             HHHHhhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          287 TEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       287 ~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      .++|+++.-..    ..++..+|..|..+|+.+.|..+|+.|.++-..
T Consensus       100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            99999987544    578999999999999999999999999998643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.01  E-value=4.2e-09  Score=85.81  Aligned_cols=96  Identities=10%  Similarity=0.007  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      +......+.+|..+...|++++|...|+.++.+||.+...|+++|.++..+|+|++|+..|.+|+.++|+|+.....++.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            56667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          341 AKKKIHERREQEKKQY  356 (361)
Q Consensus       341 ~~~~~~~~~~~~k~~~  356 (361)
                      +...+++...+.+.+-
T Consensus       112 c~L~lG~~~~A~~aF~  127 (157)
T PRK15363        112 CYLACDNVCYAIKALK  127 (157)
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999988877766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4e-09  Score=96.85  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=119.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+++++..|..++-..+-+.|+.+|+++|++-+..      .........+.....+.+.|.-.++.|+|.+|-+.|..|
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh------~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDH------QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhh------hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            47889999999999999999999999999944321      111122356667778899999999999999999999999


Q ss_pred             hhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       291 l~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      |.++|++    ++.|.++|.++..+|+.++|+.+++.|++|+|..-.++...++|+..+++++++-+..
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~  344 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDY  344 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987    7889999999999999999999999999999998888889999999988888765543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2e-09  Score=99.77  Aligned_cols=128  Identities=23%  Similarity=0.199  Sum_probs=116.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+.++.+.||+.|..|+|++|.+.|++||+                  -+.....+++|+|..+.++|+.++|+..+-+.
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~------------------ndasc~ealfniglt~e~~~~ldeald~f~kl  550 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALN------------------NDASCTEALFNIGLTAEALGNLDEALDCFLKL  550 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHc------------------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence            366788999999999999999999999998                  67778899999999999999999999999998


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      -.+--+++.+++.+|.+|..+.+..+|++.|.++..+-|+++.++..|+.+..+-.+..++-+-.|
T Consensus       551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence            888888999999999999999999999999999999999999999999999887766655544333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.99  E-value=4.2e-09  Score=109.35  Aligned_cols=115  Identities=14%  Similarity=0.144  Sum_probs=107.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+...|++++|+..|+++++                  .+|.+..++.+++.++...|++++|+..+++++
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS------------------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            55688899999999999999999999999                  788888899999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      +.+|++.. ++.+|.++...|++++|+..|+++++++|+++.++..++.+....
T Consensus       111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049        111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            99999999 999999999999999999999999999999999988888776543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.97  E-value=3.4e-09  Score=76.02  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      |..+|+..++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|++++++.|+++.+......+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            356789999999999999999999999999999999999999999999999999999999998877665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.97  E-value=9e-09  Score=92.60  Aligned_cols=111  Identities=12%  Similarity=0.087  Sum_probs=94.6

Q ss_pred             HHHHHhcchh-HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH---HHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          213 DSIKVFGNEH-YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT---KSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       213 ~~~~~~G~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ...+..+..+ ++.|+|++|+..|++.+.                  ..|.   ...+++.+|.+|+.+|+|++|+..|.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~------------------~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~  204 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVK------------------KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA  204 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4556666665 567999999999999998                  3333   35789999999999999999999999


Q ss_pred             HHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          289 FAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       289 ~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +++...|++   +.+++++|.++..+|++++|+..|+++++..|+...+......+
T Consensus       205 ~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        205 SVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            999888875   78999999999999999999999999999999988765555444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.96  E-value=5e-09  Score=89.52  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=112.0

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ....+.+.+.|..++.+|+|++|...|++|+...                .-+.-...|.|++.|.++.|+++.|..+++
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP----------------AYGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----------------CCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence            3357788999999999999999999999998722                233455679999999999999999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|+++|+++.+...++..++..|+|..|..++++...--+-..+.+.+..++..++++...+.
T Consensus       164 raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~  227 (250)
T COG3063         164 RALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ  227 (250)
T ss_pred             HHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999999999888888888888888888887765544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.96  E-value=5.7e-09  Score=92.76  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=105.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH---HHHHHHHHHHHHhc--------CCh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKL--------GDL  280 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l--------~~~  280 (361)
                      ...+..+|..+++.|+|++|+..|+++++                  ..|..   ..+++.+|.++..+        +++
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~  131 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIR------------------LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAA  131 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCchHHHHHHHHHHHHHhcccccCCHHHH
Confidence            35678899999999999999999999998                  33322   23688999999876        889


Q ss_pred             HHHHHHHHHHhhcCCCchhhH-----------------hHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 018098          281 KGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAV  340 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~  340 (361)
                      ++|+..+++++..+|++..++                 +.+|..|...|++++|+..|+++++..|++   ..++..++.
T Consensus       132 ~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~  211 (235)
T TIGR03302       132 REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence            999999999999999985442                 467888999999999999999999998764   578899999


Q ss_pred             HHHHHHHHHHHHH
Q 018098          341 AKKKIHERREQEK  353 (361)
Q Consensus       341 ~~~~~~~~~~~~k  353 (361)
                      +...+++..++..
T Consensus       212 ~~~~lg~~~~A~~  224 (235)
T TIGR03302       212 AYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHcCCHHHHHH
Confidence            9999888877664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.94  E-value=7.4e-09  Score=112.23  Aligned_cols=120  Identities=19%  Similarity=0.155  Sum_probs=99.7

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p  295 (361)
                      ...|..+++.|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..|+++++++|
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQ------------------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4568888899999999999999998                  7777778889999999999999999999999999999


Q ss_pred             CchhhHhHHHH------------------------------------------HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          296 DNVKALFRQGQ------------------------------------------AYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       296 ~~~ka~~~~a~------------------------------------------a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      .+..++..++.                                          ++...|++++|++.|+++++++|+++.
T Consensus       417 ~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~  496 (1157)
T PRK11447        417 GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW  496 (1157)
T ss_pred             CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            88776654443                                          344678999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018098          334 IKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       334 ~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++..++.+....++.+++..
T Consensus       497 ~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        497 LTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            88888888877776665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.93  E-value=1.2e-08  Score=95.74  Aligned_cols=131  Identities=15%  Similarity=0.082  Sum_probs=116.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ....++-.+...+..|+++.|+..++..+.                  ..|.++..+.-++.++++.++..+|++.++++
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka  366 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA------------------AQPDNPYYLELAGDILLEANKAKEAIERLKKA  366 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            345667777778888888888888888776                  77888889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      +.++|...-..+++|++|...|++.+|+..+++.+.-+|+|+..|..|+++...+.+..++.......+
T Consensus       367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988777665554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.93  E-value=8.8e-09  Score=107.90  Aligned_cols=124  Identities=20%  Similarity=0.250  Sum_probs=107.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|+++++                  .+|....++..+|.++...|++++|+..++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  185 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALA------------------IDPRSLYAKLGLAQLALAENRFDEARALIDEV  185 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467788999999999999999999999998                  56666778889999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~  247 (899)
T TIGR02917       186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE  247 (899)
T ss_pred             HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999998888888887776665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.93  E-value=9.1e-09  Score=107.81  Aligned_cols=128  Identities=21%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+..+|..+...|++++|+..|++++.                  ..|.+..++.+++.++.+.|+ .+|+..+++++
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVK------------------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            45566777778888888888888888887                  667777888899999999998 88999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      .+.|+++..+..+|.++..+|++++|+..|+++++++|.++.++..++.+....++.+++. +.+++|
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~  897 (899)
T TIGR02917       831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR-KELDKL  897 (899)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999999999999988887776655443 344444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=98.93  E-value=3.5e-08  Score=91.43  Aligned_cols=113  Identities=15%  Similarity=0.088  Sum_probs=103.6

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCchh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~~p~~~k  299 (361)
                      .+...+++++|+..+.++|.                  ++|.+.++|..++.++..++ ++++++..+++++..+|++..
T Consensus        46 ~l~~~e~serAL~lt~~aI~------------------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq  107 (320)
T PLN02789         46 VYASDERSPRALDLTADVIR------------------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ  107 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH
Confidence            35567899999999999999                  99999999999999999998 689999999999999999999


Q ss_pred             hHhHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       300 a~~~~a~a~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +|+.++.++..+++.  ++++.+++++++++|.|-.++...+-+...++..+++
T Consensus       108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee  161 (320)
T PLN02789        108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE  161 (320)
T ss_pred             HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999874  7889999999999999999999999999888876653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.92  E-value=1.7e-08  Score=96.41  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +..+|..+++.|++++|+..|+++++                  ..|....++..+|.++.+.|++++|+..+++++..+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALA------------------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh------------------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            44566666666677777777777666                  444445566666666666666777776666666666


Q ss_pred             CCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          295 DDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       295 p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |.+ ..++..++.+|..+|++++|+..++++++++|+...+ ..++.+....++.+
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence            655 3455566666666666666666666666666655433 44555444443333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.92  E-value=1.4e-08  Score=96.96  Aligned_cols=140  Identities=17%  Similarity=0.150  Sum_probs=89.6

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc----------ccCCCCccch------hHHHH-----HHHHHHHHHH
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW----------EKEGIDEGKS------SSLRK-----TKSQIFTNSS  271 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~----------~~~~~~~~~~------~~~~~-----~~~~~~~nla  271 (361)
                      ..+..+|..+++.|+|++|+..|.++++..+...          .......+..      ....+     .....+.++|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            4567778888888888888888888876311100          0000000000      00111     1233566777


Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHH
Q 018098          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~  350 (361)
                      .++.+.+++++|+..++++++.+|+...+++.+|.++...|++++|+..|+++++.+|.+ ..++..+..+....++.++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            777788888888888888888888888888888888888888888888888888877765 3455666666666555544


Q ss_pred             HH
Q 018098          351 QE  352 (361)
Q Consensus       351 ~~  352 (361)
                      +.
T Consensus       268 A~  269 (389)
T PRK11788        268 GL  269 (389)
T ss_pred             HH
Confidence            43

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=1.5e-08  Score=102.73  Aligned_cols=121  Identities=7%  Similarity=-0.003  Sum_probs=106.2

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ..++.+.++...+..+.+.+++++|+..++++++                  .+|.+..+++.+|.++.++|+|++|+..
T Consensus       115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~------------------~~p~~~~~~~~~a~~l~~~g~~~~A~~~  176 (694)
T PRK15179        115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS------------------GGSSSAREILLEAKSWDEIGQSEQADAC  176 (694)
T ss_pred             hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence            3344578889999999999999999999999999                  8899999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI  345 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~  345 (361)
                      |++++.-+|++++++..+|.++..+|+.++|...|++|+++... .+.....+.++....
T Consensus       177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  236 (694)
T PRK15179        177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADL  236 (694)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998743 344444555554433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.91  E-value=2.4e-09  Score=75.00  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~  296 (361)
                      .+|..+++.|+|++|+..|+++++                  ..|.+..++..+|.|+..+|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK------------------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC------------------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            578899999999999999999999                  77889999999999999999999999999999999998


Q ss_pred             ch
Q 018098          297 NV  298 (361)
Q Consensus       297 ~~  298 (361)
                      ++
T Consensus        64 ~p   65 (65)
T PF13432_consen   64 NP   65 (65)
T ss_dssp             -H
T ss_pred             CC
Confidence            74

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.90  E-value=1.1e-08  Score=110.99  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=67.3

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~  296 (361)
                      ..|..++..|++++|+..|+++++                  .+|.+..++..+|.+|.++|++++|+..++++++++|+
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~------------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~  335 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVR------------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH  335 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            457778888888888888888887                  55555566666666666666666666666666666655


Q ss_pred             chhh--------------HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          297 NVKA--------------LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       297 ~~ka--------------~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +...              ...+|.++...|++++|+..|+++++++|++..++..++.+....++.+
T Consensus       336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~  402 (1157)
T PRK11447        336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA  402 (1157)
T ss_pred             ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            4321              1123444444555555555555555555555444444444444444333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.90  E-value=2.7e-08  Score=99.24  Aligned_cols=125  Identities=12%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...||.+|..|++++|.+...++|+                  .+|....+|..||.||..+|+.++|+...-.|
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA  199 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA  199 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence            477889999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      -.++|.+..-|.+++.....+|.+++|+-+|.+|++++|.+.........+..+..+..++-.
T Consensus       200 AHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~  262 (895)
T KOG2076|consen  200 AHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME  262 (895)
T ss_pred             HhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence            999999999999999999999999999999999999999998888888888888777766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.88  E-value=4.2e-09  Score=74.41  Aligned_cols=67  Identities=31%  Similarity=0.370  Sum_probs=62.4

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ++.|+|++|+..+++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.++..++++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998888877754

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.88  E-value=2.1e-08  Score=82.92  Aligned_cols=105  Identities=26%  Similarity=0.294  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCC
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD  296 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Al~~~~~al~~~p~  296 (361)
                      -|+.|.+.|+....                  .+|.+...++|-|.+++.+.+          +++|+.-+++||.++|+
T Consensus         6 ~FE~ark~aea~y~------------------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~   67 (186)
T PF06552_consen    6 FFEHARKKAEAAYA------------------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN   67 (186)
T ss_dssp             HHHHHHHHHHHHHH------------------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHH------------------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc
Confidence            36778888888877                  899999999999999888743          57799999999999999


Q ss_pred             chhhHhHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          297 NVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       297 ~~ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      ...|++.+|.+|..++.           |++|..+|++|...+|+|..+++.|......=+-..
T Consensus        68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~  131 (186)
T PF06552_consen   68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHM  131 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHH
Confidence            99999999999988764           789999999999999999999999988865444333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.8e-08  Score=89.90  Aligned_cols=120  Identities=19%  Similarity=0.130  Sum_probs=105.1

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLK  281 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~  281 (361)
                      .......++.|.-+|.+++..+++..|...|.+|++                  +.|.+..++..+|.+++...   .-.
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r------------------L~g~n~~~~~g~aeaL~~~a~~~~ta  210 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR------------------LAGDNPEILLGLAEALYYQAGQQMTA  210 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcCCcccH
Confidence            334445688899999999999999999999999999                  88899999999999888764   478


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      ++...+.++|++||.++.+.+.+|..+++.|+|.+|+..++..+++.|.+..-...+....
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i  271 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI  271 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999998765555444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.85  E-value=1.2e-07  Score=84.56  Aligned_cols=131  Identities=19%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..++..|..++..|+|++|++.|++.+..-+               ..+....+.+++|.+|.++++|++|+..+++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---------------~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            355688899999999999999999999998332               22345556799999999999999999999999


Q ss_pred             hhcCCCc---hhhHhHHHHHHHhcC---------------C---HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHH
Q 018098          291 MRDGDDN---VKALFRQGQAYMALN---------------D---VDAAVESFEKALKLEPNDG---GIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~---~ka~~~~a~a~~~l~---------------~---~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~  346 (361)
                      ++++|++   ..++|.+|.++..++               +   ..+|+..|++.++..|+.+   ++...+..++.++.
T Consensus        96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866         96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence            9999987   568999999875554               1   2578899999999999864   56666777777776


Q ss_pred             HHHHHHHHHH
Q 018098          347 ERREQEKKQY  356 (361)
Q Consensus       347 ~~~~~~k~~~  356 (361)
                      +.+-.--+.|
T Consensus       176 ~~e~~ia~~Y  185 (243)
T PRK10866        176 KYELSVAEYY  185 (243)
T ss_pred             HHHHHHHHHH
Confidence            6655444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.82  E-value=8.4e-08  Score=70.61  Aligned_cols=88  Identities=31%  Similarity=0.383  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      +++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999998999999888888


Q ss_pred             HHHHHHHH
Q 018098          346 HERREQEK  353 (361)
Q Consensus       346 ~~~~~~~k  353 (361)
                      ++.+++.+
T Consensus        82 ~~~~~a~~   89 (100)
T cd00189          82 GKYEEALE   89 (100)
T ss_pred             HhHHHHHH
Confidence            77665543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.80  E-value=6.2e-08  Score=77.64  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=95.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+...|...++.|+|.+|++.++....-.+               ..+....+.+.++-+|++.++|++|+..+++-|
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            56788899999999999999999998765211               344566788999999999999999999999999


Q ss_pred             hcCCCch---hhHhHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 018098          292 RDGDDNV---KALFRQGQAYMALND---------------VDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       292 ~~~p~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                      +++|.++   -|+|.+|.+++.+..               ..+|...|++.++.-|+++-+..
T Consensus        75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999884   589999999999887               88999999999999999875543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.80  E-value=3.5e-08  Score=83.54  Aligned_cols=113  Identities=14%  Similarity=0.071  Sum_probs=105.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|.-++++|+.+-..|-+..|.-.+.+++.                  +.|..+.+++-+|..+...|+|+.|.+.++..
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLa------------------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhh------------------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence            688899999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG--GIKKELAVA  341 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~l~~~  341 (361)
                      +++||.+--++.+||.+++--|+|.-|.+++.+-.+-||+|+  ..|..+.+.
T Consensus       126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~  178 (297)
T COG4785         126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ  178 (297)
T ss_pred             hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987  445554444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.80  E-value=4.7e-08  Score=101.61  Aligned_cols=110  Identities=12%  Similarity=0.030  Sum_probs=101.6

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..+...|++++|++.+++++.                  ..|.+..++.++|.++...|++++|+..+++++.
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~  421 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAY------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV  421 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            4556788899999999999999999998                  7888889999999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      ++|++..+++.+|.++..++++++|.+.++++++..|+++.+...-..
T Consensus       422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999976655443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.79  E-value=1.2e-08  Score=96.06  Aligned_cols=71  Identities=17%  Similarity=0.127  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh---HhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA---LFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       257 ~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      ...+|....+++|+|.+|.++|+|++|+..|++||+++|++..+   ||++|.+|..+|++++|+++|++|+++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999865   999999999999999999999999998

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.78  E-value=2.8e-08  Score=97.65  Aligned_cols=105  Identities=24%  Similarity=0.180  Sum_probs=93.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH--HHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL--DTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~--~~~  288 (361)
                      .+..++..|..+..+|++.+|.+.|..|+.                  ++|..+.+...+|.|+++.|+..-|..  ...
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------------------ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA------------------LDPDHVPSMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------------------cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            466778888888999999999999999998                  888899999999999999998777777  889


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      .|+++||.|.++||.+|.++..+|+.++|..+|..|++|++.+|.
T Consensus       745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999988763

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.76  E-value=8.3e-08  Score=99.12  Aligned_cols=114  Identities=12%  Similarity=0.016  Sum_probs=66.8

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +...+..+...++.|+|+.|+..|+++++                  .+|........++.++..+|++++|+.+|++++
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~   95 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ   95 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence            45678889999999999999999999998                  444443222244555555555555555555555


Q ss_pred             hcCCCchhhHhHH--HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQ--GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p~~~ka~~~~--a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                        +|.+...+-.+  |.++..+|++++|++.|+++++++|+++.++..+..+....
T Consensus        96 --~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~  149 (822)
T PRK14574         96 --SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA  149 (822)
T ss_pred             --cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence              33332222222  44555555555555555555555555555554444443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.76  E-value=7.9e-08  Score=90.79  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.+++++++++|++..++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45668888999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 018098          347 ERREQEKKQ  355 (361)
Q Consensus       347 ~~~~~~k~~  355 (361)
                      ++.++....
T Consensus        85 ~~~eA~~~~   93 (356)
T PLN03088         85 EYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHH
Confidence            887666543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.76  E-value=1.9e-07  Score=81.16  Aligned_cols=127  Identities=21%  Similarity=0.222  Sum_probs=98.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..++..|..++..|+|.+|+..|++.+...+               ..+....+.+.+|.++.+.++|.+|+..+++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P---------------~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP---------------NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467899999999999999999999999987332               23456678899999999999999999999999


Q ss_pred             hhcCCCc---hhhHhHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN---VKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++..|++   ..++|.+|.+++.+.           ...+|+..|+..++.-|+++   .+...+..+...+.+.+-.-
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987   469999999977654           34589999999999999975   45566666666665554433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.75  E-value=1.7e-07  Score=78.94  Aligned_cols=110  Identities=16%  Similarity=0.131  Sum_probs=88.3

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc--
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN--  297 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~--  297 (361)
                      +.+|-.+.|..+...+.+.++..                -......+|+++|.++..++++++|+..+.+++.+.|+.  
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~   70 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTT----------------SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD   70 (168)
T ss_pred             cccccccccccchhhhhHhccCC----------------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence            34444555666666664443311                334567789999999999999999999999999987763  


Q ss_pred             -hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          298 -VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       298 -~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                       +.+++++|.++..+|++++|+..|+++++++|.+...+..++.+...+
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence             458999999999999999999999999999999998888888887733

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=2.4e-08  Score=70.51  Aligned_cols=67  Identities=24%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~  301 (361)
                      +++.|+|++|+..|++++.                  .+|.+..++..+|.||++.|++++|...+.+++..+|+++.++
T Consensus         1 ll~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ------------------RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH------------------HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            4678999999999999999                  8899999999999999999999999999999999999998777


Q ss_pred             hHHHH
Q 018098          302 FRQGQ  306 (361)
Q Consensus       302 ~~~a~  306 (361)
                      .-++.
T Consensus        63 ~l~a~   67 (68)
T PF14559_consen   63 QLLAQ   67 (68)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            76664

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.74  E-value=2.6e-08  Score=72.46  Aligned_cols=67  Identities=30%  Similarity=0.419  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GD---DNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~----~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      |....++.++|.+|..+|+|++|+.++++++.+    .+   .-+.+++++|.++..+|++++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            567789999999999999999999999999965    22   23789999999999999999999999999986

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=7.8e-08  Score=91.91  Aligned_cols=153  Identities=14%  Similarity=0.160  Sum_probs=124.7

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc--------------------------c---------c--
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC--------------------------W---------E--  247 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~--------------------------~---------~--  247 (361)
                      ..+.++.+++|.-+|.+....++=..||..+++|+++-+..                          |         .  
T Consensus       312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~  391 (579)
T KOG1125|consen  312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS  391 (579)
T ss_pred             HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence            44455579999999999999999999999999998865411                          0         0  


Q ss_pred             -cCCCCcc---------c----------hhHHHH--HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098          248 -KEGIDEG---------K----------SSSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (361)
Q Consensus       248 -~~~~~~~---------~----------~~~~~~--~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a  305 (361)
                       .++...+         .          .....+  .++.++..||..|...++|++|+.+|+.||..+|++...|.|+|
T Consensus       392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG  471 (579)
T KOG1125|consen  392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG  471 (579)
T ss_pred             cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence             0011100         0          011233  45677888999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098          306 QAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       306 ~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      -++..-.+.++|+..|.+|++|-|+...++.+++...-.++.++++-+....
T Consensus       472 AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  472 ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988876654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=3e-08  Score=88.72  Aligned_cols=141  Identities=17%  Similarity=0.186  Sum_probs=103.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC---------CCCccch-------hHHHHHHHHHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE---------GIDEGKS-------SSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---------~~~~~~~-------~~~~~~~~~~~~nla~~~~  275 (361)
                      +.-+...+.++-..+++++|+++|+.+++.-+...+--         ...+|..       ..+--.+..+++|+|.|++
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            34445555556666677777777777666322110000         0111110       1144456788999999999


Q ss_pred             hcCChHHHHHHHHHHhhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          276 KLGDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       276 ~l~~~~~Al~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .-++++-++..+++|+....   .-+..||++|.+....|++..|.++|+-|+..||++.++..+|+.+..+..+..++.
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence            99999999999999997654   237899999999999999999999999999999999999999999988876665543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=6.3e-08  Score=91.51  Aligned_cols=124  Identities=21%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc---CChH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLK  281 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~  281 (361)
                      .-++.+.++.++..||..+..+.+..|+..|.+++.                  ..|....+|.|+|.++++.   ++--
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q------------------~~~~~~~~l~nraa~lmkRkW~~d~~  428 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ------------------YVPDAIYLLENRAAALMKRKWRGDSY  428 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh------------------hccchhHHHHhHHHHHHhhhccccHH
Confidence            456666789999999999999999999999999998                  7778889999999999986   6788


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      .|+.+|..|++++|...||+|+++.++..++++.+|+.+...+....|.+.+.......+.+.+.
T Consensus       429 ~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~  493 (758)
T KOG1310|consen  429 LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDIS  493 (758)
T ss_pred             HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchH
Confidence            99999999999999999999999999999999999999998888888877665554444444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.69  E-value=1.8e-07  Score=79.12  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      .++....+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|+++++++|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            456777889999999999999999999999999887753   57999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHH
Q 018098          336 KELAVAKKKIHE  347 (361)
Q Consensus       336 ~~l~~~~~~~~~  347 (361)
                      ..++.+...+.+
T Consensus       110 ~~lg~~~~~~g~  121 (172)
T PRK02603        110 NNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHcCC
Confidence            888888766544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=6.1e-08  Score=94.82  Aligned_cols=122  Identities=15%  Similarity=0.162  Sum_probs=110.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+.+....|+..+..++|.+|.++++.+++                  ++|.....|+++|.|.+++++++.|..+|.++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLE------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhh------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            455667788888889999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.++|++..+|.+++.+|..+++-.+|-..+++|++.+-++..+|.+...+...+...+.
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED  605 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence            999999999999999999999999999999999999998888888888877776665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.68  E-value=2.4e-07  Score=80.88  Aligned_cols=122  Identities=18%  Similarity=0.205  Sum_probs=100.8

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p  295 (361)
                      ....+.++..|+=+.+.....+++.                  ..+.+..++.-.+...+..|+|.+|+..+.++..++|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~------------------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p  131 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI------------------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP  131 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc------------------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence            4455555666666666666666544                  4455555666688999999999999999999999999


Q ss_pred             CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +++++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++-......+.+.+++-.
T Consensus       132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         132 TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999998877777776666544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.67  E-value=1e-07  Score=69.23  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+.+|++++++....           ....+..+.++.|+|.|+..+|++++|++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL-----------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367889999999999999999999999999963322           113556789999999999999999999999999


Q ss_pred             HhhcC
Q 018098          290 AMRDG  294 (361)
Q Consensus       290 al~~~  294 (361)
                      ++++.
T Consensus        72 al~i~   76 (78)
T PF13424_consen   72 ALDIF   76 (78)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            99763

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.67  E-value=1.3e-07  Score=86.52  Aligned_cols=125  Identities=21%  Similarity=0.172  Sum_probs=97.5

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+......+...++++++...++++....                -.+.+..+|..+|.++.+.|++++|+..+++||+
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~  174 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELP----------------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALE  174 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455567788899999999999976511                2246778899999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++|++..+...++.++..+|+++++...++...+..|.|+.++..++.+...+++.+++..
T Consensus       175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence            9999999999999999999999999999999999889999999999999999988776554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.67  E-value=3.7e-07  Score=91.99  Aligned_cols=121  Identities=23%  Similarity=0.272  Sum_probs=110.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.-+++.+|-+|+|..+...+..|+...               ...+..+..++.+|.+|..+|+|++|-.+|.++
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---------------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNT---------------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---------------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46777888999999999999999999998732               145567778999999999999999999999999


Q ss_pred             hhcCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +..+|++ .-+++.+|+.|...|+++.|+.+|++.++..|++.+..+.|+.+.....
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            9999999 8999999999999999999999999999999999999999999988874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.66  E-value=6.3e-08  Score=69.35  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=64.3

Q ss_pred             cchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCch
Q 018098          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~  298 (361)
                      ...+++.++|++|++++++++.                  ++|.+..++..+|.|+.++|+|.+|+.+++++++.+|++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE------------------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH------------------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            4578899999999999999999                  8999999999999999999999999999999999999998


Q ss_pred             hhHhHHHH
Q 018098          299 KALFRQGQ  306 (361)
Q Consensus       299 ka~~~~a~  306 (361)
                      .+..-++.
T Consensus        64 ~~~~~~a~   71 (73)
T PF13371_consen   64 DARALRAM   71 (73)
T ss_pred             HHHHHHHh
Confidence            87666553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.66  E-value=3.3e-07  Score=71.82  Aligned_cols=88  Identities=17%  Similarity=0.272  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKEL  338 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l  338 (361)
                      ..++++|..+.+.|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            467899999999999999999999999999877   5799999999999999999999999999999985   5678888


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+++..++.
T Consensus        83 ~~~~~~~~~~~~A~   96 (119)
T TIGR02795        83 GMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHhCChHHHH
Confidence            88877776665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.65  E-value=2.6e-07  Score=75.80  Aligned_cols=97  Identities=23%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ......+|..++..|+|++|+..|++++...+               .......+..++|.+++.+|+|++|+..++. +
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---------------d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~  111 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAP---------------DPELKPLARLRLARILLQQGQYDEALATLQQ-I  111 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-c
Confidence            34455566666666666666666666665110               1223344556666666666666666666644 2


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      .-.+..+.++..+|.++..+|++++|+..|++|
T Consensus       112 ~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  112 PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            333334555566666666666666666666655

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=6.1e-07  Score=84.56  Aligned_cols=112  Identities=18%  Similarity=0.127  Sum_probs=95.8

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +-..|.++++.++.++|++.+++++.                  ++|....++.|+|.++++.|++.+|+...+..+.-+
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~------------------l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALA------------------LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            34456778899999999999999999                  888889999999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |+++..|..+|++|..+|+-.+|...+...+.+.-.-..+...+..++.+
T Consensus       405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99999999999999998888888877777777776655555555555444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=4.8e-07  Score=71.25  Aligned_cols=99  Identities=20%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+++.|..+-..|+.++|+..|++++..-.               ..+....++.++|.++..+|++++|+..+++++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---------------~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGL---------------SGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4678888899999999999999999998210               2345567899999999999999999999999999


Q ss_pred             cCCC---chhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          293 DGDD---NVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       293 ~~p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      -.|+   +.....-++.++..+|++++|+..+-.++-
T Consensus        67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888   778888899999999999999999987764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.58  E-value=6.6e-07  Score=87.05  Aligned_cols=133  Identities=15%  Similarity=0.157  Sum_probs=108.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|..+.++|..|++.|+|.+|..++++|+++....          .....+.-...+.+++.++..++++++|+.+++++
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~----------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL----------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh----------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            58889999999999999999999999999977641          11256677788999999999999999999999999


Q ss_pred             hhcC-----C---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDG-----D---DNVKALFRQGQAYMALNDVDAAVESFEKALKLE--------PNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~-----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++.     +   .-++.+-++|.+|+.+|+|++|...|++|+...        +........++....+++.+.++.+
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            9653     2   337899999999999999999999999999875        2234456666666666666655443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.58  E-value=1.9e-07  Score=94.02  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=94.5

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CC
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--GD  295 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--~p  295 (361)
                      +|-++-..|+|.+|+..|.+..+                  .-..+..+|.|+|.||+.+|+|..|++.|+.+++.  ..
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrE------------------a~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~  713 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVRE------------------ATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK  713 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHH------------------HHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45556666666666666666655                  33346688999999999999999999999999964  34


Q ss_pred             CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +++..+..+|.+++..|++.+|...+.+|+.+.|.|..+..+++.+..++...-
T Consensus       714 ~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  714 NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999988877765543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.55  E-value=4.4e-07  Score=85.73  Aligned_cols=67  Identities=22%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHH---HHHHHHHHHHhcCChHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ---IFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ..+..+.++|..+++.|+|++|+..|++||+                  ++|.+..   +|+|+|.||.++|++++|+.+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~  134 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE------------------LNPNPDEAQAAYYNKACCHAYREEGKKAADC  134 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3578899999999999999999999999999                  7777764   599999999999999999999


Q ss_pred             HHHHhhcC
Q 018098          287 TEFAMRDG  294 (361)
Q Consensus       287 ~~~al~~~  294 (361)
                      +.+||++.
T Consensus       135 LrrALels  142 (453)
T PLN03098        135 LRTALRDY  142 (453)
T ss_pred             HHHHHHhc
Confidence            99999984

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.54  E-value=1.1e-06  Score=85.57  Aligned_cols=129  Identities=16%  Similarity=0.101  Sum_probs=98.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+..+|..+..+|+|++|+..+++|++.+...+-.          ..+....+..++|..|..+++|.+|+..|++||
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~----------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL----------KHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc----------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4555669999999999999999999999964322110          245566667789999999999999999999999


Q ss_pred             hc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHH---HHHHHHHHHH
Q 018098          292 RD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PNDGGIKKELAV---AKKKIHERRE  350 (361)
Q Consensus       292 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~~~~~~~~l~~---~~~~~~~~~~  350 (361)
                      .+        +|.-+-++.++|.+|...|++++|..++++|+++-     ...+.+...+.+   +...+.+.++
T Consensus       269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee  343 (508)
T KOG1840|consen  269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE  343 (508)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence            43        56668899999999999999999999999999874     234444444444   4444444433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.54  E-value=5.1e-06  Score=63.67  Aligned_cols=106  Identities=18%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh----
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM----  291 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al----  291 (361)
                      ...|...+..|-|.+|...|.+|++...+..+++.      =+.+..+.-|+..|+.++..+|+|++++...+++|    
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEa------FDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEA------FDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhh------cccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            34456667889999999999999997766544332      23678889999999999999999999999999999    


Q ss_pred             ---hcCCC----chhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          292 ---RDGDD----NVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       292 ---~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                         +++.+    ++.+.+++|.++..+|+.++|+..|+++-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               45554    3678899999999999999999999998664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.51  E-value=1.2e-06  Score=77.33  Aligned_cols=115  Identities=16%  Similarity=0.175  Sum_probs=99.2

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +...++.+..+++.|+|..|...|..-+.--+               -.+....+++-||.+++.+|+|+.|...|..++
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---------------~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~  205 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYP---------------NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV  205 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------------CCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence            34488999999999999999999999987221               233456789999999999999999999999999


Q ss_pred             hcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          292 RDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       292 ~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +-.|++   +.+++.+|.+...+|+-++|...|+++++--|+...+......+
T Consensus       206 k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         206 KDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            998887   46799999999999999999999999999999988776655544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=3.3e-06  Score=73.39  Aligned_cols=137  Identities=15%  Similarity=0.057  Sum_probs=86.5

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc-----------ccCC---CCccch--hHHHHHHHHHHHHHHHHHHhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-----------EKEG---IDEGKS--SSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~---~~~~~~--~~~~~~~~~~~~nla~~~~~l  277 (361)
                      ..+-.|..+-..|.|++|+++|+..+.--+...           ....   ...+.+  .+.-+.+..+|.-+|..|+.+
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence            344567777789999999999998887111000           0000   000001  122334556777777777777


Q ss_pred             CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       278 ~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ++|++|.=++++.+-+.|.++-.+-|+|..++-+|   +++-|..+|.++++++|.+...+..+-.+-..+.+.-+
T Consensus       168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk  243 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISK  243 (289)
T ss_pred             hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence            77777777777777777777777777777776665   45667777777777777666666666666555554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.47  E-value=1.2e-06  Score=90.62  Aligned_cols=118  Identities=10%  Similarity=0.061  Sum_probs=98.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+...|..+...|+|++|++.|+++++                  .+|.+..++..++..+..++++++|+..+++++
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~------------------~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~  163 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLK------------------KDPTNPDLISGMIMTQADAGRGGVVLKQATELA  163 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            34555667788889999999999999999                  888888889999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      ..+|.+... ..++.++..++++.+|+..|+++++++|++..+...+..+...+.-.
T Consensus       164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~  219 (822)
T PRK14574        164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV  219 (822)
T ss_pred             ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence            999985444 44455565677887799999999999999999888887776665433

>TIGR00540 hemY_coli hemY protein

Probab=98.46  E-value=3.9e-06  Score=81.02  Aligned_cols=127  Identities=14%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      +.+.+......|...+..|+|+.|.+...++.+                  ..|.....+.-.|.++..+|+++.|..++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~------------------~~~~~~~~~llaA~aa~~~g~~~~A~~~l  141 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD------------------HAAEPVLNLIKAAEAAQQRGDEARANQHL  141 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            344677778889999999999999999999887                  44444556677788888899999999999


Q ss_pred             HHHhhcCCCch-hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       288 ~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .++.+..|++. .+....+.++...|++++|++.+++.++..|+++.+...+..+....++.++..
T Consensus       142 ~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       142 EEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             HHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            99998888775 354556888999999999999999999999999999999999888888876544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=5e-06  Score=74.67  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=96.2

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +..+-++|-..++|++||+.-++.+.+-.             ....-..+..|+.+|..++...+.+.|+....+|+..+
T Consensus       144 lqqLl~IYQ~treW~KAId~A~~L~k~~~-------------q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~  210 (389)
T COG2956         144 LQQLLNIYQATREWEKAIDVAERLVKLGG-------------QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD  210 (389)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCC-------------ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence            33444455555555555554444433111             11344566778899999988999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-GGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++.|-.-+|.+....|+|+.|++.++++++-||.. +++...|..+...+.+..+-..
T Consensus       211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999999974 6788888888888877665443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.44  E-value=6.1e-06  Score=79.35  Aligned_cols=126  Identities=13%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHH-HHHHHhcCChHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS-SACKLKLGDLKGALLD  286 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~~l~~~~~Al~~  286 (361)
                      +.+.+......|...+-.|+|+.|.+...++-+                  ..+ ...+++.+ +....+.|+++.|..+
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~------------------~~~-~p~l~~llaA~aA~~~g~~~~A~~~  140 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNAD------------------HAE-QPVVNYLLAAEAAQQRGDEARANQH  140 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------ccc-chHHHHHHHHHHHHHCCCHHHHHHH
Confidence            444677788899999999999999977776554                  111 12333444 5555889999999999


Q ss_pred             HHHHhhcCCCchh-hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       287 ~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++.+.+|++.- .....+..+...|++++|++.+++..+.+|+++.+...+..+..+.++.++..
T Consensus       141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999998753 44455889999999999999999999999999999999999988888776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=5.2e-06  Score=68.03  Aligned_cols=129  Identities=12%  Similarity=0.025  Sum_probs=100.7

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+...+......+..+++..+...+++.+.--+               -.+....+.+.+|.++...|++++|+..++.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---------------SSPYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---------------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3466666677777788899988888888776111               1234467788899999999999999999999


Q ss_pred             HhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       290 al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      ++...|+.   ..+.+++|.++...|++++|+..++. ..-.+-.+.+...++.+....++..++...
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99987665   56899999999999999999999966 333445677888888888888777665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.4e-06  Score=83.39  Aligned_cols=128  Identities=23%  Similarity=0.131  Sum_probs=119.1

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.+..|+..|-.++..+++.+|.++|.||..                  +++....+|...|..+.-.++.++|+..|..
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~------------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t  371 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATT------------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT  371 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhh------------------cCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence            3577899999999999999999999999998                  9999999999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      |-++-|......+.+|.-|..++.++.|..+|..|+.+.|+|+-+...++.+.-..+.+.++.+-+
T Consensus       372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f  437 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF  437 (611)
T ss_pred             HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888777777665543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.40  E-value=4.9e-07  Score=66.75  Aligned_cols=78  Identities=26%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             cCChHHHHHHHHHHhhcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          277 LGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       277 l~~~~~Al~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      .++|+.|+..+++++..+|.  +...++.+|.+++.+|+|++|+..+++ ++.+|.+......++.+...+++++++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58999999999999999995  577888899999999999999999999 889998889999999999999998887654


Q ss_pred             H
Q 018098          355 Q  355 (361)
Q Consensus       355 ~  355 (361)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.40  E-value=2.8e-06  Score=87.41  Aligned_cols=120  Identities=17%  Similarity=0.120  Sum_probs=100.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ..++..+...+...+++++|+...+.+++                  ..|....+|+.+|..+.+.+++.+|...  .++
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l   90 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--NLI   90 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--hhh
Confidence            55677788888899999999999999998                  7888888899999988888887776655  565


Q ss_pred             hcCCCch-------------------hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNV-------------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~-------------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+-+.+.                   .|++.+|.||..+|++++|.+.|+++++++|+|..+...++-..... +.+++.
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence            5555554                   89999999999999999999999999999999999999999887777 444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.39  E-value=3.2e-06  Score=82.05  Aligned_cols=121  Identities=15%  Similarity=0.181  Sum_probs=104.4

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .++......|..++|.+.+..-+..|.                  -.|.....+.-.|.....+|+-++|...+..+++.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~------------------k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~   70 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK------------------KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN   70 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH------------------hCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence            455666677888899888888888777                  45555666777888888999999999999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+.+.-+|.-+|..+..-.+|++|+.+|..|+.++|+|..++.-++.++.++++.+--.
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            99999999999999999999999999999999999999999999999999998876533

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.39  E-value=4.2e-06  Score=83.94  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=96.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ...+++.+|.++-.+|+..+|+.....|.-                  ++|.+...|..++....++|.+.+|+-+|.+|
T Consensus       172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W~~ladls~~~~~i~qA~~cy~rA  233 (895)
T KOG2076|consen  172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELWKRLADLSEQLGNINQARYCYSRA  233 (895)
T ss_pred             chhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            467889999999999999999999988877                  77888899999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      |..+|.+.+.+++++..|..+|++..|...|.+++.++|
T Consensus       234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999

>PRK11906 transcriptional regulator; Provisional

Probab=98.37  E-value=3.6e-06  Score=79.76  Aligned_cols=108  Identities=13%  Similarity=0.059  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHH---hhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHhhcC
Q 018098          227 DYKMALRKYRKAL---RYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---------GDLKGALLDTEFAMRDG  294 (361)
Q Consensus       227 ~y~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~~Al~~~~~al~~~  294 (361)
                      .-+.|+..+.+|+   .                  ++|....+|.-+|.|++..         ..-.+|+....+|++++
T Consensus       273 ~~~~Al~lf~ra~~~~~------------------ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld  334 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSD------------------IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT  334 (458)
T ss_pred             HHHHHHHHHHHHhhccc------------------CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence            5678889999999   5                  8888999999999999875         23467888999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |.++.|++.+|.++...++++.|+..|++|+.++|+...++...+-+...-++.+++.
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~  392 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR  392 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999888888665555554443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.7e-05  Score=69.08  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Al~~~  287 (361)
                      ..++|.+++..|+..|+|++|.-||++.+-                  ..|.+..++..+|.++.-+|   ++.-|.++|
T Consensus       153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll------------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy  214 (289)
T KOG3060|consen  153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL------------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYY  214 (289)
T ss_pred             cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            588999999999999999999999999997                  78889999999999988875   578899999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcC
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALN  312 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~  312 (361)
                      .++++++|.+..++|-+-.+...+-
T Consensus       215 ~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  215 ERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHhChHhHHHHHHHHHHHHHHH
Confidence            9999999999999998876655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.35  E-value=2.2e-06  Score=80.87  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+...|..+...|++++|+..++++++                  +.|.+..++..+|.++...|++++|+..+++++
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~------------------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALE------------------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            44556778899999999999999999999                  777778899999999999999999999999999


Q ss_pred             hcCCCch----hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          292 RDGDDNV----KALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       292 ~~~p~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ...|..+    ..+..+|.++..+|++++|+..|++++...|
T Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         176 DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            9987542    3566899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.32  E-value=7e-06  Score=81.05  Aligned_cols=121  Identities=13%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             hHHHHHhcchhHHh---hhHHHHHHHHHHHHhhhcccc--------------ccCCCCccch----h------H--HHHH
Q 018098          212 VDSIKVFGNEHYKK---QDYKMALRKYRKALRYLDICW--------------EKEGIDEGKS----S------S--LRKT  262 (361)
Q Consensus       212 a~~~~~~G~~~~~~---g~y~~A~~~y~~al~~~~~~~--------------~~~~~~~~~~----~------~--~~~~  262 (361)
                      |-.++-.|..++..   +++..|+.+|++|+++-+...              ..........    .      .  .++.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            44556667666544   458899999999998654210              0001101100    0      0  1333


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      ...+|.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            446677788888888999999999999999998 5789999999999999999999999999999998875

>TIGR00540 hemY_coli hemY protein

Probab=98.31  E-value=4.1e-06  Score=80.84  Aligned_cols=127  Identities=16%  Similarity=0.022  Sum_probs=100.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHH--HHHHHHHHHhcCChHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI--FTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ....+...|..+...|++++|+...+++++                  ..|.+...  ..-+....+..++...++..++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~------------------~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK------------------KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh------------------hCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            567778888999999999999999999998                  33333321  1223333345688899999999


Q ss_pred             HHhhcCCCch--hhHhHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098          289 FAMRDGDDNV--KALFRQGQAYMALNDVDAAVESFE--KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       289 ~al~~~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      ++++.+|+++  ..+..+|.+++.+|+|++|.++|+  .+++.+|++.. ...++.+...+++.+++ ++.|+
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~  394 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQ  394 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHH
Confidence            9999999999  888899999999999999999999  68888887766 44889998888776555 34444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.30  E-value=1.7e-06  Score=78.14  Aligned_cols=87  Identities=17%  Similarity=0.107  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +-..|.-|+++|.|++||.+|.+++.++|.|+-.+.+||.+|+.+.+|..|..+|+.|+.|+-....++...+.++..++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35578899999999999999999999999999999999999999999999999999999999777677777777777766


Q ss_pred             HHHHHHH
Q 018098          347 ERREQEK  353 (361)
Q Consensus       347 ~~~~~~k  353 (361)
                      ..+++.+
T Consensus       180 ~~~EAKk  186 (536)
T KOG4648|consen  180 NNMEAKK  186 (536)
T ss_pred             hHHHHHH
Confidence            6655443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=1.3e-05  Score=72.11  Aligned_cols=129  Identities=13%  Similarity=0.070  Sum_probs=108.2

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+.|.-+.+++..+....+.+.|.....+|+.                  .+|..+.+-.-+|.+++..|+|+.|++.++
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e  238 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQ------------------ADKKCVRASIILGRVELAKGDYQKAVEALE  238 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh------------------hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence            34577778888888899999999999999999                  889999999999999999999999999999


Q ss_pred             HHhhcCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       289 ~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      .+++-||.. +.+.-.+..||..+|+.++.+..+.++.+..++. ++...+.++....+-...++...+
T Consensus       239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~  306 (389)
T COG2956         239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLT  306 (389)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHH
Confidence            999999988 6788889999999999999999999999998754 444555555555554444444433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.29  E-value=1e-05  Score=79.98  Aligned_cols=123  Identities=14%  Similarity=0.072  Sum_probs=110.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      -..|...+..+.+.+.-++|..+..+|-.                  +.+..+..|+.+|.++...|++.+|.+.|..|+
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASK------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHh------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence            44555666666777788888889999887                  889999999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVE--SFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+||+.+....-+|.++...|+..-|..  .+..+++++|.|.++|..++.+.....+.+++.
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence            9999999999999999999998888877  999999999999999999999999988876543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.29  E-value=6.6e-06  Score=77.58  Aligned_cols=142  Identities=10%  Similarity=-0.081  Sum_probs=107.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-------------cCCCCccc------hhHHHHHHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-------------KEGIDEGK------SSSLRKTKSQIFTNSSA  272 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~nla~  272 (361)
                      .+.....|..++..|++++|+..++++++..+....             ........      .....|....++..+|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            344566788899999999999999999875432110             00000000      01234455567778999


Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG----IKKELAVAKKKIHER  348 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~~~~~~  348 (361)
                      ++..+|++++|+..++++++++|+++.++..+|.+++.+|++++|+..+++++.+.|.++.    .+..++.+....++.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999999999999999999999999999999999999886443    234577777777666


Q ss_pred             HHHHH
Q 018098          349 REQEK  353 (361)
Q Consensus       349 ~~~~k  353 (361)
                      +++.+
T Consensus       203 ~~A~~  207 (355)
T cd05804         203 EAALA  207 (355)
T ss_pred             HHHHH
Confidence            65543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.29  E-value=1e-05  Score=66.48  Aligned_cols=96  Identities=10%  Similarity=-0.063  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      +.+......+..|--+...|++++|...|.-...++|.+++.++.+|.++..+++|++|+..|..|..++++|+......
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            55566677788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEKK  354 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k~  354 (361)
                      +.|...+++...+.+-
T Consensus       112 gqC~l~l~~~~~A~~~  127 (165)
T PRK15331        112 GQCQLLMRKAAKARQC  127 (165)
T ss_pred             HHHHHHhCCHHHHHHH
Confidence            9999888887776653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.27  E-value=1.3e-05  Score=63.08  Aligned_cols=88  Identities=20%  Similarity=0.204  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN---DGGIKKEL  338 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~---~~~~~~~l  338 (361)
                      .+++++|.++-.+|+.++|+..|.+++......   ..++..+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            367899999999999999999999999976544   679999999999999999999999999999898   77777777


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+...+.+.+++-
T Consensus        82 Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   82 ALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHCCCHHHHH
Confidence            77766666555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=1.6e-06  Score=52.06  Aligned_cols=32  Identities=38%  Similarity=0.797  Sum_probs=19.9

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      ++|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=1.6e-06  Score=77.93  Aligned_cols=114  Identities=11%  Similarity=0.084  Sum_probs=87.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .+.+.-+...|.+-.+...|+..|.+.++                  .-|.+++.+...|.++..++++++|++.|..++
T Consensus       256 ~dTfllLskvY~ridQP~~AL~~~~~gld------------------~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl  317 (478)
T KOG1129|consen  256 PDTFLLLSKVYQRIDQPERALLVIGEGLD------------------SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL  317 (478)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHhhhhh------------------cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence            44444455555555556666666666655                  567788888888999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      +++|.|+++.--.|..|+.-++.|-|+.+|.+.+++--.+++...+++.|--
T Consensus       318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            9999888888888888888888888888888888888778887777776643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=5.3e-06  Score=78.62  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +|.+++..++..+|++...++|...|.++..+.-.|..+...++++.|+...+++.++.|++...|..|+++.-.+++.+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            44455455555555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             HH
Q 018098          350 EQ  351 (361)
Q Consensus       350 ~~  351 (361)
                      .+
T Consensus       286 ~A  287 (395)
T PF09295_consen  286 NA  287 (395)
T ss_pred             HH
Confidence            43

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.3e-06  Score=77.43  Aligned_cols=100  Identities=15%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+.+++..+.+.++|..|+.+-+++|.                  ++|.++.+++.+|.+++.+++|+.|+.++++|+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------------------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~  318 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLE------------------LDPNNVKALYRRGQALLALGEYDLARDDFQKAL  318 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHh------------------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34567788899999999999999999999                  999999999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAA-VESFEKALKLEP  329 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~P  329 (361)
                      +++|.|-.+...+..+.....++.+. .+.|.+.+..-+
T Consensus       319 k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  319 KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999988888888887777766655 677888776654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.21  E-value=9.3e-06  Score=80.15  Aligned_cols=54  Identities=15%  Similarity=-0.049  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k  299 (361)
                      ++++|...|++|++                  ++| +..+|..+|.++...|++++|+..+.+|++++|..+.
T Consensus       435 ~~~~A~~~l~rAl~------------------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        435 KTDEAYQAINKAID------------------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CHHHHHHHHHHHHH------------------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            46666666666665                  667 4678999999999999999999999999999999875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.6e-05  Score=71.22  Aligned_cols=93  Identities=22%  Similarity=0.158  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      .+|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++...   .-.+|...|++++++||.|..++
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            789999999999999999999999999999999999999999999999877654   45689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          336 KELAVAKKKIHERREQ  351 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~  351 (361)
                      ..|+...-.-++++++
T Consensus       231 ~lLA~~afe~g~~~~A  246 (287)
T COG4235         231 SLLAFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHHHHHHcccHHHH
Confidence            9999887777776654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.20  E-value=3.6e-05  Score=64.10  Aligned_cols=113  Identities=15%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ......+|+.+...|++.+|..+|++++.=                 +-..+..++..+|.+.+.++++..|....++..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-----------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSG-----------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-----------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            456778899999999999999999999971                 334566788999999999999999999999999


Q ss_pred             hcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          292 RDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       292 ~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +.+|.  .+....-.|.++..+|++++|...|+.++..-|+ +.......+..
T Consensus       152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~L  203 (251)
T COG4700         152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEML  203 (251)
T ss_pred             hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence            99986  4788888999999999999999999999999986 33444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.19  E-value=1.7e-05  Score=71.44  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 018098          264 SQIFTNSSACK-LKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKK  336 (361)
Q Consensus       264 ~~~~~nla~~~-~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~  336 (361)
                      ...+++.|..+ ++.++|++|+..|+..+...|++   +.++|++|.+|+..|++++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45667788876 66799999999999999999998   5799999999999999999999999999999985   56666


Q ss_pred             HHHHHHHHHHHHHHH
Q 018098          337 ELAVAKKKIHERREQ  351 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~  351 (361)
                      .++.+...+++..++
T Consensus       222 klg~~~~~~g~~~~A  236 (263)
T PRK10803        222 KVGVIMQDKGDTAKA  236 (263)
T ss_pred             HHHHHHHHcCCHHHH
Confidence            667776665544443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.19  E-value=3.5e-05  Score=63.05  Aligned_cols=113  Identities=16%  Similarity=0.062  Sum_probs=86.1

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-c-C--CCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-K-E--GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      +...|......++...++..+.+++.+..--.- . .  .+.......+......++..++..+...|++++|+..|+++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            334455666778899999999999987653211 1 1  22223345677788888999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      +.++|.+..+|..+-.+|..+|+..+|+..|+++.+.
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.18  E-value=4.6e-06  Score=53.35  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456667777777777777777777777777777777666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.16  E-value=1.7e-06  Score=52.00  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE  319 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~  319 (361)
                      |++||+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999973

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.15  E-value=4.5e-05  Score=69.78  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=85.6

Q ss_pred             hhHHHHHhcchhHHh-hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .|..+..+|..+... +++++|+++|++|+++...-            ........++.++|.++.++++|++|+..|++
T Consensus       113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e------------~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE------------GSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            578888999999998 99999999999999965421            12334567889999999999999999999999


Q ss_pred             HhhcCCC------chh-hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          290 AMRDGDD------NVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       290 al~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      +....-+      +++ .+++.+.+++.+|++..|...+++....+|.-
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9875422      233 45677889999999999999999999999963

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.14  E-value=1.5e-05  Score=78.44  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +..+...+|.-....++|+++..+++..++++|-....||++|.+..++++++.|..+|.++..++|++.+.|.++..++
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            33444444555556799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018098          343 KKIHERREQEKKQ  355 (361)
Q Consensus       343 ~~~~~~~~~~k~~  355 (361)
                      -++++.+++.+..
T Consensus       564 i~~~~k~ra~~~l  576 (777)
T KOG1128|consen  564 IRLKKKKRAFRKL  576 (777)
T ss_pred             HHHhhhHHHHHHH
Confidence            9988887765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.12  E-value=2.9e-05  Score=73.63  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                      .|.+..++..-|..+++.++++.|+..+++|..+.|++.+.|+.+|.+|..+|++++|+..++.+--+.+.++...+
T Consensus       230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~  306 (395)
T PF09295_consen  230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLK  306 (395)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence            44567778888999999999999999999999999999999999999999999999999888765544444444433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.12  E-value=4.6e-06  Score=50.00  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      .+|+++|.+|..++++++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=6.3e-06  Score=49.27  Aligned_cols=34  Identities=47%  Similarity=0.793  Sum_probs=24.2

Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      +++++.+|.++..+|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=1.9e-05  Score=66.40  Aligned_cols=81  Identities=21%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      -|.-+++-|+|.+|...|+.||.+.|..     +-.|.++|.|+..++.++.|+.++.+|++|+|.+..++...+.++..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            3556688999999999999999999976     45888999999999999999999999999999988888887888777


Q ss_pred             HHHHHH
Q 018098          345 IHERRE  350 (361)
Q Consensus       345 ~~~~~~  350 (361)
                      +...+.
T Consensus       181 ~ek~ee  186 (271)
T KOG4234|consen  181 MEKYEE  186 (271)
T ss_pred             hhhHHH
Confidence            755544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.09  E-value=2e-05  Score=76.69  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=97.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .+.+--.|-.+...|+-++|..+-..+++                  .++....||.-+|.++..-++|++||.+|..||
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr------------------~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl  102 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLR------------------NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL  102 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhc------------------cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            44555678888888888888888888888                  677777888888888888888888888888888


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++|+|...|.-++....++++|+.....-.+.+++.|...+.|..++..+-.+.++..
T Consensus       103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen  103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888887777777776666655544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.08  E-value=2.9e-05  Score=74.66  Aligned_cols=120  Identities=18%  Similarity=0.115  Sum_probs=95.8

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.+..+...+..+...|+.++|....+++++                  ..+ +..+..-.+.  +..+++++++..+++
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~------------------~~~-~~~l~~l~~~--l~~~~~~~al~~~e~  319 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK------------------RQY-DERLVLLIPR--LKTNNPEQLEKVLRQ  319 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCC-CHHHHHHHhh--ccCCChHHHHHHHHH
Confidence            3566677788999999999999999999987                  211 1122222222  244899999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .++.+|+++..++.+|.++...++|++|...|++++++.|++.. ...++.+..+..+.+++
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999998765 44788888877776555

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.06  E-value=0.00017  Score=63.35  Aligned_cols=132  Identities=15%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+++.|...++.|+|++|+.+|+....--      +         ..|....+...++.++.+.++|++|+...++-
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~------p---------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF   97 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH------P---------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF   97 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C---------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            36779999999999999999999999987611      1         34455678899999999999999999999999


Q ss_pred             hhcCCCc---hhhHhHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN---VKALFRQGQAYMALN--------DVDAAVESFEKALKLEPND---GGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       291 l~~~p~~---~ka~~~~a~a~~~l~--------~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      +++.|.+   .-++|-+|.++...=        --.+|+..|+..+.--|+.   +++...+..+..++...+-.--+.|
T Consensus        98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY  177 (254)
T COG4105          98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY  177 (254)
T ss_pred             HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999987   457888898876532        2357888999999999986   4677777777777777666555554


Q ss_pred             h
Q 018098          357 R  357 (361)
Q Consensus       357 ~  357 (361)
                      .
T Consensus       178 ~  178 (254)
T COG4105         178 L  178 (254)
T ss_pred             H
Confidence            3

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.06  E-value=3.6e-05  Score=70.44  Aligned_cols=132  Identities=19%  Similarity=0.165  Sum_probs=92.0

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      ..+.+..+...|+.+-..++|++|.++|.+|.+.....            ........+|.+.+.||.+. ++++|+..+
T Consensus        31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~------------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~   97 (282)
T PF14938_consen   31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL------------GDKFEAAKAYEEAANCYKKG-DPDEAIECY   97 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT------------T-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            33467788888888888999999999999998744321            12334556778888887666 999999999


Q ss_pred             HHHhhcCCC------chhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDD------NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPN--D----GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       288 ~~al~~~p~------~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~--~----~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++|+.+.-.      -++++.++|.+|... +++++|+..|++|+++-..  .    ......++.+..+++++.++-
T Consensus        98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen   98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            999976321      267888899999998 9999999999999887432  1    234455566666666665543

>PRK11906 transcriptional regulator; Provisional

Probab=98.05  E-value=2.3e-05  Score=74.43  Aligned_cols=89  Identities=16%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      ..+-.+|.+.-.+|++                  +++.++.++..+|.+....++++.|+..+++|+.++|+.+.+||..
T Consensus       317 ~~~~~~a~~~A~rAve------------------ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~  378 (458)
T PRK11906        317 ELAAQKALELLDYVSD------------------ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR  378 (458)
T ss_pred             hHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence            4455667777777777                  8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          305 GQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       305 a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      |.+....|+.++|++.+++|++++|.-
T Consensus       379 ~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        379 ALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            999999999999999999999999964

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2e-05  Score=73.06  Aligned_cols=110  Identities=12%  Similarity=0.054  Sum_probs=73.6

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..|...|-.+|..++|..|+.+-+|+|+                  .++....++.-.|.....+++.++|+-.|..|+
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~------------------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCID------------------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhc------------------cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence            44556666666777777777777777776                  566666666666666666666666666666666


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      .+.|.....|-.+--+|...|++.+|...-..+++.-|++......++
T Consensus       362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            666666666666666666666666666666666666666666665554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.05  E-value=2e-05  Score=72.23  Aligned_cols=109  Identities=18%  Similarity=0.162  Sum_probs=75.2

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHH--hcC--ChHHHHHHHHHHhhcCC
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL--KLG--DLKGALLDTEFAMRDGD  295 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~l~--~~~~Al~~~~~al~~~p  295 (361)
                      ..+.+.++++.|.+.++..-+.                  ++..  ...+++.++.  ..|  .+++|...|++.....+
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~------------------~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~  198 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQI------------------DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG  198 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCC------------------SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc------------------CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC
Confidence            4667888999999888876551                  1111  2233333322  233  58888888888877777


Q ss_pred             CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      .++..+..+|.+++.+|+|++|...++++++.+|+++++..++..+...+++.
T Consensus       199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            88888888888888889999998888888888888888888887776666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.02  E-value=0.00012  Score=57.38  Aligned_cols=86  Identities=19%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-H---HHHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-G---GIKKELAVAK  342 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-~---~~~~~l~~~~  342 (361)
                      +-.-|.+..+-|+.+.|++.|.++|.+.|.++.+|.++|+++.-.|+.++|+.++++|+++...- .   ......+.+.
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44456777889999999999999999999999999999999999999999999999999997542 2   2233444444


Q ss_pred             HHHHHHHHHH
Q 018098          343 KKIHERREQE  352 (361)
Q Consensus       343 ~~~~~~~~~~  352 (361)
                      +.+.+.+.+.
T Consensus       126 Rl~g~dd~AR  135 (175)
T KOG4555|consen  126 RLLGNDDAAR  135 (175)
T ss_pred             HHhCchHHHH
Confidence            4444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=4e-05  Score=79.17  Aligned_cols=114  Identities=16%  Similarity=0.186  Sum_probs=97.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      -.+++.+|..|-+.|++++|...|+++|+                  ++|.++.+++|+|-.|... +.++|+.++.+|+
T Consensus       116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~------------------~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        116 KLALRTLAEAYAKLNENKKLKGVWERLVK------------------ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            35788999999999999999999999999                  8899999999999999999 9999999999998


Q ss_pred             --------------------hcCCCchhh--------HhHHH------------HHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          292 --------------------RDGDDNVKA--------LFRQG------------QAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 --------------------~~~p~~~ka--------~~~~a------------~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                                          ..+|++...        .-.++            ..|...++|++++..|+.+++++|.|
T Consensus       177 ~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n  256 (906)
T PRK14720        177 YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN  256 (906)
T ss_pred             HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence                                335554332        22234            67788899999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018098          332 GGIKKELAVAKKK  344 (361)
Q Consensus       332 ~~~~~~l~~~~~~  344 (361)
                      .-++..+..+.+.
T Consensus       257 ~~a~~~l~~~y~~  269 (906)
T PRK14720        257 NKAREELIRFYKE  269 (906)
T ss_pred             hhhHHHHHHHHHH
Confidence            9999999988774

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.01  E-value=4.3e-05  Score=75.19  Aligned_cols=92  Identities=20%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      ...+++.+|+.|..+|++++|+.+.++||...|+.+..|+.+|.++...|++++|...++.|-.+|+.|.-+....+.-.
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999987777777776


Q ss_pred             HHHHHHHHHHHH
Q 018098          343 KKIHERREQEKK  354 (361)
Q Consensus       343 ~~~~~~~~~~k~  354 (361)
                      .+..+.+++++.
T Consensus       273 LRa~~~e~A~~~  284 (517)
T PF12569_consen  273 LRAGRIEEAEKT  284 (517)
T ss_pred             HHCCCHHHHHHH
Confidence            666666555543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.98  E-value=1.7e-05  Score=73.47  Aligned_cols=110  Identities=17%  Similarity=0.282  Sum_probs=88.0

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ++...-.++-++||.+|-.|+|+.||..-+.-|++.+..-            .....-.++.|+|.||.-+|+++.|+++
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~eh  257 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEH  257 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHH
Confidence            3344456677889999999999999999998888665320            1223446899999999999999999999


Q ss_pred             HHHHhhc----CCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          287 TEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       287 ~~~al~~----~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      |.+++.+    ...  .+...|.+|.+|.-+.+++.||.++.+-+.+.
T Consensus       258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988744    322  36778999999999999999999999877764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.98  E-value=4.5e-05  Score=50.52  Aligned_cols=49  Identities=16%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ..+|.+|.+++.+|+|++|..+++.+++++|+|..+......++.++..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999999999999999888888777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.98  E-value=0.00021  Score=62.11  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=91.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-----------C
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----------D  279 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~  279 (361)
                      ...+...+|..+++.|+|..|+..|++.++.-+               -.+....+++.+|.+++++.           .
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---------------~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~  105 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---------------NSPKADYALYMLGLSYYKQIPGILRSDRDQTS  105 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---------------T-TTHHHHHHHHHHHHHHHHHHHH-TT---HH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---------------CCcchhhHHHHHHHHHHHhCccchhcccChHH
Confidence            356778899999999999999999999998332               23445568888888877653           2


Q ss_pred             hHHHHHHHHHHhhcCCCchh-----------------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHH
Q 018098          280 LKGALLDTEFAMRDGDDNVK-----------------ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI---KKELA  339 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~k-----------------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~~l~  339 (361)
                      ..+|+..++..++..|++..                 --+..|.-|...|.|..|+.-++.+++.-|+.+..   +..+.
T Consensus       106 ~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~  185 (203)
T PF13525_consen  106 TRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA  185 (203)
T ss_dssp             HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            45899999999999998832                 23446888999999999999999999999997654   45555


Q ss_pred             HHHHHHHHHH
Q 018098          340 VAKKKIHERR  349 (361)
Q Consensus       340 ~~~~~~~~~~  349 (361)
                      ++..+++...
T Consensus       186 ~~y~~l~~~~  195 (203)
T PF13525_consen  186 EAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHTT-HH
T ss_pred             HHHHHhCChH
Confidence            5555555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.98  E-value=1.2e-05  Score=51.37  Aligned_cols=42  Identities=17%  Similarity=0.021  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      .++..+|.+|..+|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            468899999999999999999999999999999999999886

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.97  E-value=3.1e-05  Score=78.66  Aligned_cols=116  Identities=11%  Similarity=-0.000  Sum_probs=94.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...|..+|-.+.+.+++..|+..++.|++                  .+|.+..+|..+|.+|...|+|..|++.+++|.
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR------------------~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALR------------------TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhc------------------CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            34555688888888888889988988888                  888888889999999988899999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      .++|.+.-+.|..|.....+|+|.+|+..+...+..-......+..++++.-+.
T Consensus       624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999988888888888888889999988888888776655555555555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.97  E-value=3.6e-05  Score=78.18  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=112.4

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc----------cccCCCCccch--------hHHHHHHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC----------WEKEGIDEGKS--------SSLRKTKSQIFTNSS  271 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~nla  271 (361)
                      ..|-.+-.+|..|..--+...|..+|.+|.++-..-          +.+.+.+++..        ..........|..+|
T Consensus       490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG  569 (1238)
T KOG1127|consen  490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG  569 (1238)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence            357888899999988888899999999998743311          11111111111        111223334566799


Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ..|++.+++..|+..++.||+.+|.+..+|..+|.+|...|+|.-|++.|.+|..++|.+.-.+...+.++..+.+++++
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888888888888887764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=5.7e-05  Score=70.78  Aligned_cols=78  Identities=13%  Similarity=-0.017  Sum_probs=59.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      --||..|+...-+++||.++++|--+.|+.+|...-.|.|+...|+|..|...|+...+..|.|.+.++.|.++...+
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence            345556666666777888888888888888887777788888888888888888888888888887777777775554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.94  E-value=0.00012  Score=71.64  Aligned_cols=126  Identities=10%  Similarity=-0.013  Sum_probs=88.5

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+...++.....+..++|+...+++|+                  .-|....+|.-+|+++..+++.+.|...|...++
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk------------------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k  713 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALK------------------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK  713 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHH------------------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence            3344445555556666777777777776                  5566667777777777777777777777777777


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY  356 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  356 (361)
                      ..|.++..|..++..-...|+.-.|...++++.-.+|.|...+....++..+....+.++....
T Consensus       714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777666666665555554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00028  Score=65.65  Aligned_cols=102  Identities=15%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH-----
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL-----  285 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~-----  285 (361)
                      ....+.-.|+.+...++.++|+-.|+.|..                  +.|....+|..|-.||+..+++.+|..     
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQM------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHh------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            456778899999999999999999999999                  677777778777777777777655444     


Q ss_pred             -------------------------------HHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          286 -------------------------------DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       286 -------------------------------~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                                                     .++++|++.|.+.+|...+|..+..-|.+++++..+++++...|+
T Consensus       395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D  470 (564)
T KOG1174|consen  395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD  470 (564)
T ss_pred             HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence                                           444445666666666666666666656665555555555555543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.90  E-value=0.00014  Score=64.41  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAV  340 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~  340 (361)
                      .++.|.-+++.|+|..|...|..-+...|++   +.|+|++|.+++.+|+|++|...|..+.+-.|.+   ++....++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888899999999999999999999999987   6899999999999999999999999999999875   467777788


Q ss_pred             HHHHHHHHHHHHH
Q 018098          341 AKKKIHERREQEK  353 (361)
Q Consensus       341 ~~~~~~~~~~~~k  353 (361)
                      +..++++.+++.+
T Consensus       224 ~~~~l~~~d~A~a  236 (262)
T COG1729         224 SLGRLGNTDEACA  236 (262)
T ss_pred             HHHHhcCHHHHHH
Confidence            8777777666543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.84  E-value=3.3e-05  Score=46.04  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      .+|..+|.++.++|+|++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.81  E-value=0.00022  Score=66.34  Aligned_cols=113  Identities=17%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .....|-..|++++|..|...|..||+++..-.-...+-......+......+-..+..||+++++.+.|+....+.|.+
T Consensus       178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence            33456677888999999999999999888754443333333333455566667789999999999999999999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      +|.+..-+.+.|.++..+.+|.+|...+--|.-
T Consensus       258 nP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987766544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.79  E-value=0.00012  Score=67.16  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      .+++|.-.|++...                  ..+..+.+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..
T Consensus       182 ~~~~A~y~f~El~~------------------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv  243 (290)
T PF04733_consen  182 KYQDAFYIFEELSD------------------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV  243 (290)
T ss_dssp             CCCHHHHHHHHHHC------------------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh------------------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            68899999998654                  223456778899999999999999999999999999999999999999


Q ss_pred             HHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHH
Q 018098          307 AYMALNDV-DAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       307 a~~~l~~~-~~A~~~~~~al~l~P~~~~~~~~  337 (361)
                      +...+|+. +.+.+++.+....+|+++-+...
T Consensus       244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            99999988 66777888888899988755443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.75  E-value=0.00016  Score=70.75  Aligned_cols=85  Identities=21%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ..+|+..+.....+++.++|+..|+++|+.-|+..|.|..+|+++..+++.+.|...|...++..|+....|..|+.+.+
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            35677777777889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHH
Q 018098          344 KIHER  348 (361)
Q Consensus       344 ~~~~~  348 (361)
                      .....
T Consensus       731 k~~~~  735 (913)
T KOG0495|consen  731 KDGQL  735 (913)
T ss_pred             Hhcch
Confidence            76543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.74  E-value=0.00019  Score=64.15  Aligned_cols=79  Identities=16%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh---hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI---KK  336 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~  336 (361)
                      ....++..|.-++..|+|++|+..+++++...|....   +.+.+|.+|+.+++|++|+..+++.++++|+++.+   ..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            4455778899999999999999999999999998854   55999999999999999999999999999987543   44


Q ss_pred             HHHHH
Q 018098          337 ELAVA  341 (361)
Q Consensus       337 ~l~~~  341 (361)
                      .++.+
T Consensus       111 ~~g~~  115 (243)
T PRK10866        111 MRGLT  115 (243)
T ss_pred             HHHHh
Confidence            44433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.74  E-value=0.0002  Score=57.61  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      ...+++.|...++.|+|.+|++.++.+....|..   ..+.+.++.+|+..++|++|++.+++.++|+|.++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            3467888999999999999999999999988765   689999999999999999999999999999999764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=6.5e-05  Score=64.89  Aligned_cols=82  Identities=13%  Similarity=-0.014  Sum_probs=72.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      -+.+|+.-++|..|+..|.+||.++|..+..|-++|.+|+.+.+++.+..++.+|++++|+.......++......+.+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            35667778899999999999999999999999999999999999999999999999999998888888888877766554


Q ss_pred             HH
Q 018098          350 EQ  351 (361)
Q Consensus       350 ~~  351 (361)
                      ++
T Consensus        96 ea   97 (284)
T KOG4642|consen   96 EA   97 (284)
T ss_pred             HH
Confidence            43

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.73  E-value=0.00013  Score=72.83  Aligned_cols=129  Identities=23%  Similarity=0.406  Sum_probs=110.8

Q ss_pred             CchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CCh
Q 018098          203 NELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL  280 (361)
Q Consensus       203 ~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~  280 (361)
                      .+....+..+...+..||.+|.+++|..|-..|..++.+++.              -+.....+..|.+.||+.+  ++|
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--------------~~~~~a~~~~~~~s~~m~~~l~~~  109 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--------------DHHVVATLRSNQASCYMQLGLGEY  109 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccc--------------cchhhhhHHHHHHHHHhhcCccch
Confidence            456677778899999999999999999999999999986542              4556778889999998876  789


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      ..++..|.-|+...|.-.+++.+++.+|..+++++-|++++.-....+|.+.....-+.+++..+
T Consensus       110 ~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  110 PKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999989999999966665555555444

>PRK10941 hypothetical protein; Provisional

Probab=97.72  E-value=0.00036  Score=62.90  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      .....+.|+=.+|++.++++.|+..++..+.++|+++.-+--+|.+|.++|++..|+.+++..++..|+++.+......+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            44567889999999999999999999999999999999888899999999999999999999999999998776655554


Q ss_pred             H
Q 018098          342 K  342 (361)
Q Consensus       342 ~  342 (361)
                      .
T Consensus       259 ~  259 (269)
T PRK10941        259 H  259 (269)
T ss_pred             H
Confidence            3

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.68  E-value=0.00012  Score=67.92  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=94.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .-.++.++||.+.-.|+|+.|+++|++++.++..+-            -....+...+.||..|.-+.++++||.|.++-
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc------------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999998664331            12234556788999999999999999999998


Q ss_pred             hhcCCC------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHH
Q 018098          291 MRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLE-----PN-DGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-----P~-~~~~~~~l~~~~~~~  345 (361)
                      |.+...      ...+++.+|.++..+|..++|+.+.++.+++.     |. ...++.++..+...+
T Consensus       302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l  368 (639)
T KOG1130|consen  302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL  368 (639)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence            866432      37899999999999999999999988887763     21 223455555544433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.66  E-value=7.4e-05  Score=44.56  Aligned_cols=32  Identities=44%  Similarity=0.760  Sum_probs=22.7

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46677777777777777777777777777764

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.0003  Score=64.24  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       271 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      |.++...-.|++||+.|.++|.-+|+.......+|.+|+.+.-|+-+.+.+.-.++-.|+..-+....+-
T Consensus       158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3333344445566666666666666555555566666666666666666666666666655544444433

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.0013  Score=57.96  Aligned_cols=114  Identities=16%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR--KTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      -...+|...++.|+-+.|..++++.-+....              ++  .....+..|.+.+|...++|.+|...+++++
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k--------------L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~  279 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK--------------LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL  279 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh--------------hhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence            3455677777777777777777755432111              22  2344567888999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVA  341 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~  341 (361)
                      +.||.++.+..++|.+++.+|+..+|++.++.+++..|.-   ..+..+|..+
T Consensus       280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm  332 (366)
T KOG2796|consen  280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM  332 (366)
T ss_pred             ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999973   3344444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.53  E-value=0.0004  Score=63.58  Aligned_cols=125  Identities=22%  Similarity=0.189  Sum_probs=93.4

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .+..+|+.+...+.|+++++.|++|++++....            ..-....++..++..+..++++++|+-+..+|+++
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l  191 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL  191 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence            455589999999999999999999999764320            01123457889999999999999999999999976


Q ss_pred             CCC------c----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHHHHHHH
Q 018098          294 GDD------N----VKALFRQGQAYMALNDVDAAVESFEKALKLE--PNDGGIK----KELAVAKKKIHERRE  350 (361)
Q Consensus       294 ~p~------~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~~~~~~----~~l~~~~~~~~~~~~  350 (361)
                      -..      +    .-++|+++.++..+|+.-+|.++++++.++.  ..|..++    ..++.+.+...+.++
T Consensus       192 v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~  264 (518)
T KOG1941|consen  192 VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER  264 (518)
T ss_pred             HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence            422      2    4578899999999999999999999998874  3454433    334445554444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.51  E-value=4.7e-05  Score=45.61  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             HHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018098          234 KYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       234 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~  285 (361)
                      +|++||+                  ++|.+..+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie------------------~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE------------------LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH------------------HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889998                  999999999999999999999999863

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.00073  Score=61.78  Aligned_cols=86  Identities=22%  Similarity=0.216  Sum_probs=67.5

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~  301 (361)
                      +...++|..|+...+-.+.          ..+|++     ..  .-.-+|.|++++|+|++|+..|+-+...+.-+.+.+
T Consensus        32 fls~rDytGAislLefk~~----------~~~EEE-----~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~   94 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLN----------LDREEE-----DS--LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG   94 (557)
T ss_pred             HHhcccchhHHHHHHHhhc----------cchhhh-----HH--HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence            4567888989888776664          111111     22  234468999999999999999999999888889999


Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHH
Q 018098          302 FRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       302 ~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      .++|.+++-+|.|.+|...-.+|
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999998766554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.43  E-value=0.0041  Score=57.77  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=107.3

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      .+...+......|..-+-.|+|.+|.....++-+                  ..+.-..+|.--|.+.-++|+++.|=.+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae------------------~~e~p~l~~l~aA~AA~qrgd~~~an~y  140 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE------------------HGEQPVLAYLLAAEAAQQRGDEDRANRY  140 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh------------------cCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence            3445677788888888999999999999998776                  4445556677778888899999999999


Q ss_pred             HHHHhhcCC-CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGD-DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       287 ~~~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ..++-+..+ ++..+...++..+...|+++.|.....++++..|.++.+.....++.-+++++.+.
T Consensus       141 L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l  206 (400)
T COG3071         141 LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL  206 (400)
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence            999999943 45678888999999999999999999999999999999999999998888877653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.0031  Score=53.16  Aligned_cols=105  Identities=16%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+.....++..++..+++++|+...+.++....               .......+-.++|.+.+.++.+++|+...+..
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~---------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTK---------------DENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccch---------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            345667788899999999999999999996321               34456667789999999999999998877665


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      -.-+ ..+..--.+|.++..+|+-++|+..|+++++.+++.
T Consensus       153 ~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         153 KEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            4332 123345678999999999999999999999998544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.42  E-value=0.0027  Score=64.37  Aligned_cols=116  Identities=21%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  300 (361)
                      .....++|.+|+....+.++                  -.|+..-+..--|....++|++++|....+..-...+++...
T Consensus        18 d~ld~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t   79 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT   79 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH
Confidence            34567899999999999998                  778888888888999999999999995555555667778888


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +--+-.+|..++++++|...|++++..+|+ .+....+=.+..+.+.+++.++..
T Consensus        80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa  133 (932)
T KOG2053|consen   80 LQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAA  133 (932)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999 777777777777777777666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.41  E-value=0.00022  Score=42.47  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      .+|..+|.+|.++|++++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999954

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0039  Score=55.95  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=101.3

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF----  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~----  289 (361)
                      .-...+..+...+++.+|...+..++.                  ..+.+..+...++.||+..|+.+.|...+..    
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~------------------~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQ------------------AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHH------------------hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            345567788899999999999999998                  6677778888999999999998665443332    


Q ss_pred             ------------------------------HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Q 018098          290 ------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKE  337 (361)
Q Consensus       290 ------------------------------al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~  337 (361)
                                                    .+..+|++..+-+.+|..+...|++++|++.+-..++.+-  +|..+++.
T Consensus       198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~  277 (304)
T COG3118         198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT  277 (304)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence                                          2266899999999999999999999999999988888765  36788888


Q ss_pred             HHHHHHHHHH----HHHHHHHHHhhhc
Q 018098          338 LAVAKKKIHE----RREQEKKQYRKMF  360 (361)
Q Consensus       338 l~~~~~~~~~----~~~~~k~~~~~~f  360 (361)
                      +-++-..+..    ..+-+++.|+.+|
T Consensus       278 lle~f~~~g~~Dp~~~~~RRkL~slLy  304 (304)
T COG3118         278 LLELFEAFGPADPLVLAYRRKLYSLLY  304 (304)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHhhC
Confidence            8888877762    2334555555544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.37  E-value=0.0049  Score=48.76  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhh-cCCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098          262 TKSQIFTNSSACKLKLG---DLKGALLDTEFAMR-DGDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~---~~~~Al~~~~~al~-~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                      ......+|+|.+..+-.   +.++.+..++..++ -+|.. -...|.+|..++.+++|+.|+.++...++.+|+|..+..
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34456788888888765   46778899999996 55543 578899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 018098          337 ELAVAKKKIHE  347 (361)
Q Consensus       337 ~l~~~~~~~~~  347 (361)
                      ....++.++..
T Consensus       110 Lk~~ied~itk  120 (149)
T KOG3364|consen  110 LKETIEDKITK  120 (149)
T ss_pred             HHHHHHHHHhh
Confidence            88777776653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0016  Score=63.14  Aligned_cols=91  Identities=15%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG-  294 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~-  294 (361)
                      ++.+..+|+.+..++|+..++-                     +++....+..-+|+++.++++|++|+..|+..++-+ 
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~---------------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG---------------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc---------------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            5788889999999999999982                     333445577888999999999999999999986222 


Q ss_pred             -----------------------------CC-chhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          295 -----------------------------DD-NVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       295 -----------------------------p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                                                   |+ ....+|+.|.++...|+|.+|++.+++|+++
T Consensus       142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                                         11 3568899999999999999999999999443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=0.0019  Score=63.18  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+++.+..+|+.++|..|++.|...++++.+            +..+........+++.||+++.+.+.|++++++|=+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~------------D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~  422 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS------------DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE  422 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc------------hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            45688899999999999999999999996642            124555688899999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      .+|.++-.-+..-.+...-+.-++|+....+....
T Consensus       423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999988888888888889999999888776544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00044  Score=64.69  Aligned_cols=146  Identities=23%  Similarity=0.257  Sum_probs=109.6

Q ss_pred             eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC--ccCCC---CC
Q 018098           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE--SIYGL---KF   91 (361)
Q Consensus        17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~--~~~~~---~~   91 (361)
                      .-.|.|+++.+-.|.-++-|...|.-.           |+++..|.||+..+++|.||..-....+|.  -|.++   +|
T Consensus       111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~-----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  111 ISLIAVSLFKSGKIFVVDGFGDFCQDG-----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             eeeEEeecccCCCcEEECCcCCcCccc-----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence            349999999999999999999999876           999999999999999999985433332222  11122   24


Q ss_pred             CCC--ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098           92 EDE--NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (361)
Q Consensus        92 ~~e--~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~  169 (361)
                      +..  ++.++|.. -+....+.-..-.+-+|+++....+.+.....|+|.+..+.++++.|....++....|..++.|..
T Consensus       180 Pr~~l~~~~K~eT-dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~  258 (558)
T KOG0882|consen  180 PRTNLNFELKHET-DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH  258 (558)
T ss_pred             ccccccccccccc-hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence            443  34566643 333333332233456888888888888899999999999999999999999999888888888877


Q ss_pred             ccccC
Q 018098          170 CGEIP  174 (361)
Q Consensus       170 ~~~l~  174 (361)
                      ....+
T Consensus       259 VelgR  263 (558)
T KOG0882|consen  259 VELGR  263 (558)
T ss_pred             eehhh
Confidence            76543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.32  E-value=0.00067  Score=58.04  Aligned_cols=81  Identities=20%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      +...+.+++.+|..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999766555544


Q ss_pred             H
Q 018098          340 V  340 (361)
Q Consensus       340 ~  340 (361)
                      .
T Consensus       141 i  141 (297)
T COG4785         141 I  141 (297)
T ss_pred             e
Confidence            3

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.32  E-value=0.0043  Score=61.29  Aligned_cols=126  Identities=15%  Similarity=0.047  Sum_probs=100.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+.-++..+-..|+|++|+++.++||.                  ..|..+.+|...|.++-+.|++.+|....+.|-
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------------------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar  255 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE------------------HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR  255 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34567778888899999999999999999                  788889999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--CCC-----HHHHH--HHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE--PND-----GGIKK--ELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~~-----~~~~~--~l~~~~~~~~~~~~~~k~~  355 (361)
                      .+|+.+--.....+..+++.|+.++|...+...-+-+  |..     +.+|.  ..+++..+.+++..+-+..
T Consensus       256 ~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~  328 (517)
T PF12569_consen  256 ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF  328 (517)
T ss_pred             hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            9999887777777888999999999999988776554  211     22343  3444555555555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.27  E-value=0.0063  Score=51.51  Aligned_cols=116  Identities=27%  Similarity=0.237  Sum_probs=64.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHH-HHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA-CKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~l~~~~~Al~~~~~a  290 (361)
                      ...+...|......+++..|+..+.+++...                  +........... ++...++++.|+..+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  156 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALD------------------PDPDLAEALLALGALYELGDYEEALELYEKA  156 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555555666666666666666665511                  111111222222 666666677777777666


Q ss_pred             hhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 018098          291 MRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~  345 (361)
                      +..+|   .....++.++..+...++++.|+..+.++++..|. .......+.......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            66555   34555555555566666666666666666666666 344455554444433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.27  E-value=0.00091  Score=44.31  Aligned_cols=42  Identities=17%  Similarity=0.055  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      .+++.+|..+.++|+|.+|+.+++.+|+++|+|..|..-+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            367889999999999999999999999999999877655443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0099  Score=51.56  Aligned_cols=126  Identities=20%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             hHHHHHhcchhHHh-hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKK-QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      |.-+.++|..+-.. .++++||.+|++|-++...   +         ......-.|+...|..-..+++|.+|+..|+++
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv  180 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---E---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV  180 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---h---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556665554 7899999999999885431   0         123334457777788888899999999999999


Q ss_pred             hhcCCCc------hhhHh-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALF-RQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~------~ka~~-~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~  349 (361)
                      .+..-+|      +|-|+ ..|.+++...+.-.|...+++..+++|.-..  =-+.+..+...+++..
T Consensus       181 a~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d  248 (288)
T KOG1586|consen  181 ARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD  248 (288)
T ss_pred             HHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence            8765544      45554 4577888889999999999999999997433  3345555555555443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.26  E-value=0.00048  Score=65.37  Aligned_cols=82  Identities=16%  Similarity=0.041  Sum_probs=67.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       269 nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      +-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|.....+...+.+...+.+.
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            44556678899999999999999999999999999999999999999999999999999998655444444444444444


Q ss_pred             HH
Q 018098          349 RE  350 (361)
Q Consensus       349 ~~  350 (361)
                      ++
T Consensus        89 ~~   90 (476)
T KOG0376|consen   89 KK   90 (476)
T ss_pred             HH
Confidence            33

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0072  Score=53.42  Aligned_cols=81  Identities=19%  Similarity=0.124  Sum_probs=64.2

Q ss_pred             HHHHHHHHhc----CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          268 TNSSACKLKL----GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       268 ~nla~~~~~l----~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      .-||..+.++    +++.+|.-.|++.-..-|..+..+..+|.+++.+++|++|...++.++.-++++++...++..+..
T Consensus       173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~  252 (299)
T KOG3081|consen  173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLAL  252 (299)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            3355555543    458888888888888777788888889999999999999999999999999999988888877766


Q ss_pred             HHHHH
Q 018098          344 KIHER  348 (361)
Q Consensus       344 ~~~~~  348 (361)
                      .++.-
T Consensus       253 ~~Gkd  257 (299)
T KOG3081|consen  253 HLGKD  257 (299)
T ss_pred             HhCCC
Confidence            65543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.18  E-value=0.0026  Score=53.05  Aligned_cols=68  Identities=25%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV----------DAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      |+.|.+.++.....+|.++.++++.|.++..+.++          ++|+.-|+.|+.++|+...+.-.++.+...+..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999887544          678999999999999999999999998777654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.15  E-value=0.0012  Score=63.88  Aligned_cols=107  Identities=21%  Similarity=0.216  Sum_probs=91.9

Q ss_pred             cchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      |...--.|+-..|+.+...|+.                  +.|. ......|||.+.++-+-...|-....++|.+.-..
T Consensus       614 glywr~~gn~~~a~~cl~~a~~------------------~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se  675 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALN------------------LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE  675 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhc------------------cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence            3334457788889999999987                  3332 22347899999999999999999999999999777


Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      +-.+|.+|.++..+.+.+.|++.|+.|++++|+++.+...|..+..
T Consensus       676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            8889999999999999999999999999999999999988888776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.13  E-value=0.0039  Score=61.22  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+--+...|..+..+|+.++|++.|++++...              .........++..++.|++-+.+|++|..++.+.
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQ--------------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccch--------------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            45667788899999999999999999998611              1245566788999999999999999999999999


Q ss_pred             hhcCCCchhhHh--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 018098          291 MRDGDDNVKALF--RQGQAYMALNDV-------DAAVESFEKALKLEP  329 (361)
Q Consensus       291 l~~~p~~~ka~~--~~a~a~~~l~~~-------~~A~~~~~~al~l~P  329 (361)
                      ++.+.. ++++|  -.|.++.++++.       ++|...|.++-.+-.
T Consensus       332 ~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  332 LKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             Hhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            997754 45544  458889999999       888888888766643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.12  E-value=0.0024  Score=57.40  Aligned_cols=79  Identities=22%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      +-.+.|.-..+.|+.++|...+..|++++|+++.++...|+....-++.-+|-.+|-+|+.++|.|.++..+.......
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~pl  196 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPL  196 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchH
Confidence            3455566667889999999999999999999999999999999999999999999999999999998887776654333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.11  E-value=0.012  Score=49.85  Aligned_cols=108  Identities=30%  Similarity=0.357  Sum_probs=84.4

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-chh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-NVK  299 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~-~~k  299 (361)
                      .++..++++.|+..|.+++...+.               .......+..++..+...++++.|+..+.+++...+. ...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  203 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE  203 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchH
Confidence            788999999999999999761110               0134445566666688889999999999999999998 689


Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ++..++..+...+++++|+..+.+++...|........+.....
T Consensus       204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            99999999999999999999999999999874444444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.10  E-value=0.0002  Score=65.14  Aligned_cols=80  Identities=15%  Similarity=0.176  Sum_probs=71.6

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +..|.++.|++.|..+|.++|...-.|-.+|.++..+++...|+.+|..|++++|+...-++..+.+++.+....++.+.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999888888888888887777665544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.07  E-value=0.00092  Score=39.25  Aligned_cols=31  Identities=39%  Similarity=0.702  Sum_probs=21.1

Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666667766666777777777766666665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.07  E-value=0.012  Score=51.48  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=75.9

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh-------HHHHHHHHHH
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL-------KGALLDTEFA  290 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~Al~~~~~a  290 (361)
                      .+..+-....+++|++.|.-|+-.....           ..-....+.++..+|.+|..+++.       ..|+..|.+|
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~-----------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a  151 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIK-----------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA  151 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence            3446667789999999999998643211           001225677889999999999984       5566666666


Q ss_pred             hhcCCC------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          291 MRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      +.....      ....+|.+|.++..+|++++|+.+|.+.+..--.
T Consensus       152 ~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  152 YENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            654422      2688999999999999999999999999886433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.06  E-value=0.00083  Score=63.79  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhh---------cCC---------CchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR---------DGD---------DNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~---------~~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      ....|+|+|.+++.++.|.-++.+|.+||+         +.|         .....+|+.|..|...|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            345679999999999999999999999995         112         23689999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHH
Q 018098          325 LKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       325 l~l~P~~~~~~~~l~~~~~  343 (361)
                      .+..-.|+.+|..++++--
T Consensus       362 v~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHH
Confidence            9999999999999998843

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0048  Score=53.82  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHh------------------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAM------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al------------------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      ....++...|.-++++|+|.+|...|..||                  +++......+.+.++|++..|+|-++++.+..
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            445677888999999999999999999998                  23333456889999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          324 ALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       324 al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      .+..+|.|..++...++++...=..
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~  280 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNE  280 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCH
Confidence            9999999988887777776654333

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.95  E-value=0.0051  Score=63.68  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL----------------  327 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l----------------  327 (361)
                      ...|..+...+...|+++.|...++++++++|++...|..+..+|...|++++|.+.+++..+.                
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~  573 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ  573 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence            3458888888889999999999999999999999999999999999999999999999887654                


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHH
Q 018098          328 ----------EPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       328 ----------~P~~~~~~~~l~~~~~~~~~  347 (361)
                                +|...+++..+.++..++++
T Consensus       574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        574 DHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             EEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                      34445666666666666554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.90  E-value=0.0016  Score=37.07  Aligned_cols=31  Identities=55%  Similarity=0.927  Sum_probs=17.0

Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      +++++|.++..++++++|+..|+++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.89  E-value=0.0016  Score=39.47  Aligned_cols=25  Identities=36%  Similarity=0.551  Sum_probs=12.3

Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al  325 (361)
                      |.++|.+|..+|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.89  E-value=0.0037  Score=57.45  Aligned_cols=92  Identities=17%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG--  332 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~--  332 (361)
                      ......++.|++..+.++.++.+++.++...+.+.-..     ..++..+|.++..++.++++++.|++|++...++.  
T Consensus        79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~  158 (518)
T KOG1941|consen   79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence            34556789999999999999999999999999775444     36777899999999999999999999999865432  


Q ss_pred             ----HHHHHHHHHHHHHHHHHHH
Q 018098          333 ----GIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       333 ----~~~~~l~~~~~~~~~~~~~  351 (361)
                          .+...|+++-.++++++++
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Ka  181 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKA  181 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHH
Confidence                3566778888888887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.86  E-value=0.0019  Score=39.10  Aligned_cols=29  Identities=21%  Similarity=0.105  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +|.+||.+|.++|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            58899999999999999999999977554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.86  E-value=0.0083  Score=52.94  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      +.-|++-|...+..|+|.+|+..++.+....|.+   .++..-++.+++..++|++|+...++.+++.|.++.+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            4467888999999999999999999999988765   6899999999999999999999999999999987643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.82  E-value=0.016  Score=48.97  Aligned_cols=101  Identities=21%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .-..+..+|..+++.|++++|++.|.++.++..               -......++.++-.+.+..++|..+..+..+|
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---------------~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT---------------SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            356788999999999999999999999888553               34566778899999999999999999999888


Q ss_pred             hhcCCC----c--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          291 MRDGDD----N--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       291 l~~~p~----~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      -.+-..    .  .+.....|.+++..++|..|...|-.+..
T Consensus       100 ~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  100 ESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            865432    1  23334457778889999999998876643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.81  E-value=0.0067  Score=45.17  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~  349 (361)
                      .+..++++++.+|++..+.|.+|.++...|++++|++-+-.+++.+++  +..+++.+-.+-..+....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            467789999999999999999999999999999999999999999986  4678888888877776543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.011  Score=53.16  Aligned_cols=103  Identities=12%  Similarity=0.011  Sum_probs=82.2

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhH
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~  301 (361)
                      +.+..+|..||++...-.+                  ..|.+...+..+|.||....+|..|...|++.-.+.|...+..
T Consensus        20 lI~d~ry~DaI~~l~s~~E------------------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr   81 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELE------------------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR   81 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHh------------------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            3567788888888776666                  5666677889999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       302 ~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +..|+.++..+.+.+|++......    +++..+...-+++..++
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK  122 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence            999999999999999998665432    33445555545544443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.79  E-value=0.03  Score=53.75  Aligned_cols=107  Identities=13%  Similarity=0.073  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHH
Q 018098          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a  307 (361)
                      ...-...|+.|+.                  --+.+..+|.+......+.+.+.+.-..|.++|..+|+++..|..-|.=
T Consensus        87 ~~rIv~lyr~at~------------------rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w  148 (568)
T KOG2396|consen   87 PNRIVFLYRRATN------------------RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW  148 (568)
T ss_pred             HHHHHHHHHHHHH------------------hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence            3445567888876                  4445778888887777777889999999999999999999999999987


Q ss_pred             HHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          308 YMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       308 ~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+..+. .+.|.+.|.++++.+|+++.++...-.....--..-.++
T Consensus       149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~r  194 (568)
T KOG2396|consen  149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNR  194 (568)
T ss_pred             HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            777775 999999999999999999999888776655444433333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.76  E-value=0.0021  Score=37.62  Aligned_cols=32  Identities=22%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            68899999999999999999999999999974

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=0.029  Score=53.56  Aligned_cols=128  Identities=11%  Similarity=0.098  Sum_probs=107.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+...|.---.++++..|-..|++||.                  .+..+.++|...+.+-++.+....|....++|+
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAv  134 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV  134 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence            34455556666678899999999999998                  777889999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      .+=|.-.+.||.--..-..+|+...|.+.|++=++..|+ ..++........+.++.+++ +..|.++
T Consensus       135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeiera-R~IYerf  200 (677)
T KOG1915|consen  135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERA-RSIYERF  200 (677)
T ss_pred             HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHH-HHHHHHH
Confidence            999999999999999999999999999999999999995 55777777776666665543 3445544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.75  E-value=0.031  Score=46.96  Aligned_cols=85  Identities=15%  Similarity=0.103  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK  342 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~  342 (361)
                      -.+.||....++|++.+|...|++++. +--++...+..++++...++++..|...+++..+.+|.  .++....++...
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            357789999999999999999999995 56678899999999999999999999999999999986  456666777776


Q ss_pred             HHHHHHHH
Q 018098          343 KKIHERRE  350 (361)
Q Consensus       343 ~~~~~~~~  350 (361)
                      ...+....
T Consensus       171 aa~g~~a~  178 (251)
T COG4700         171 AAQGKYAD  178 (251)
T ss_pred             HhcCCchh
Confidence            66655543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.014  Score=53.20  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      |.-+.+++-..+-.|+|..|+..-.+|+.                  ++|....+++.-|.|++.++++.+|+.+|+..+
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~------------------~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALK------------------LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHh------------------cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            55677778888889999999999999998                  999999999999999999999999999999997


Q ss_pred             hcCC
Q 018098          292 RDGD  295 (361)
Q Consensus       292 ~~~p  295 (361)
                      .++.
T Consensus       181 ~~d~  184 (390)
T KOG0551|consen  181 QIDD  184 (390)
T ss_pred             hhhH
Confidence            7664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.011  Score=57.57  Aligned_cols=75  Identities=19%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHH
Q 018098          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKKELAVAKKKI  345 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~  345 (361)
                      +..|-|.+++++.++|+..++   -+++...+.+.-+|+.++.+++|++|+..|+...+.+-++  ...+.++..+...+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            578899999999999999988   6677778899999999999999999999999988877654  34444444444433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.033  Score=50.12  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhh
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRY  241 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~  241 (361)
                      .+.-+|..++..++|..|-.+|++.-..
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql   73 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQL   73 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566888999999999999999987663

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.64  E-value=0.017  Score=52.72  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=91.1

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhh
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Al~~~~~al~  292 (361)
                      .|....+..-+.+..+.|-..|.+|+.                  .......+|...|..-.+ .++.+.|...++.+++
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~------------------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk   64 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK------------------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK   64 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            345556677777889999999999986                  333455678888888666 4666779999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVAKKKIHERR  349 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~  349 (361)
                      .-|.+...|..-..-+..+++.+.|...|++++..-|.+.   .++....+.+...++..
T Consensus        65 ~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   65 KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999888889999999999999999999887655   67777777766665443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.63  E-value=0.02  Score=54.94  Aligned_cols=53  Identities=23%  Similarity=0.238  Sum_probs=27.9

Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..|+|.+...+|+.++|++.+...++..|.  +..++.+|.++...++.+.+.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence            3344555555566666666666555555543  3445555555555554444433

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.61  E-value=0.0038  Score=35.41  Aligned_cols=32  Identities=31%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~  296 (361)
                      .++.++|.++..++++++|+..++++++++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            46889999999999999999999999999885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.60  E-value=0.031  Score=59.62  Aligned_cols=103  Identities=17%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ...+|..+...|++++|...+.+++.......            .......++.++|.++...|++++|...+.+++.+-
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHD------------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34455555666677777776666665332110            011223466788899999999999999999888752


Q ss_pred             CC--------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          295 DD--------NVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       295 p~--------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ..        ....+..+|.++...|++++|...+.+++.+..
T Consensus       562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            21        123455678888889999999999998887643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.038  Score=49.36  Aligned_cols=82  Identities=20%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .......+..|+=..++..++++.|+.+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+....
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34445567788888999999999999999999999999999999999999999999999999999999999987654443


Q ss_pred             HH
Q 018098          339 AV  340 (361)
Q Consensus       339 ~~  340 (361)
                      ..
T Consensus       256 ~~  257 (269)
T COG2912         256 AQ  257 (269)
T ss_pred             HH
Confidence            33

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.04  Score=52.57  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~  303 (361)
                      ...+.+.+...|+.+|+++++.              .-..+.+|...|..-+++.+...|.+..-.||-+.|.. |.+-.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHk--------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~  442 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHK--------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKG  442 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcc--------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHH
Confidence            4678888999999999977642              33556677777777777777788888777777777744 22222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       304 ~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      --..-.++++++.+...|++.++..|.|-.++...+++...+.+.+++.
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence            2223446677777777788888888877777777777777777766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.56  E-value=0.042  Score=58.60  Aligned_cols=101  Identities=20%  Similarity=0.102  Sum_probs=79.1

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ....|..++..|++++|...++++++.....             .......++.++|.++...|++++|+..+.+++...
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~  521 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLT-------------WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA  521 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3345677888999999999999998732110             112234567889999999999999999999999763


Q ss_pred             CCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          295 DDN------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       295 p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      ...      ..++..+|.++...|++++|...+++++.+.
T Consensus       522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            321      3567788999999999999999999998873

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.46  E-value=0.23  Score=45.32  Aligned_cols=122  Identities=10%  Similarity=0.036  Sum_probs=88.2

Q ss_pred             CchHHHHhhhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098          203 NELSWWMNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       203 ~~~~~~~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      .++......+..+++.|..+++++ +|+.|+...++|.+++.....    ..............++..++.+|+..+.++
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~----~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK----MDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh----ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            355666778999999999999999 999999999999998754211    112222366678889999999999988865


Q ss_pred             HHHHHHHHHh----hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          282 GALLDTEFAM----RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       282 ~Al~~~~~al----~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ...+ |..++    .-.|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus       102 ~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  102 SVEK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4333 44443    44566666664444455557888888888888887654

It is also involved in sporulation [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.049  Score=48.23  Aligned_cols=123  Identities=13%  Similarity=0.237  Sum_probs=94.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .....+...+.+.-.|+|.-.+..|.+.++.                 ..+....+...++.+.++.|+.+.|-.+++.+
T Consensus       176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----------------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-----------------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             HHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-----------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3445666788888899999999999999881                 23566778888999999999999999999944


Q ss_pred             h----hcCC--CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          291 M----RDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l----~~~p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      -    .++.  .+.-+..+.+.+|...++|.+|...|.+++..||.++.+....+.|..=+.+...
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~D  304 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKD  304 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHH
Confidence            3    3332  3355677778888889999999999999999999988776666655544444433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.068  Score=47.44  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE-SFEKALKLEPNDGGI  334 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~-~~~~al~l~P~~~~~  334 (361)
                      ....++..|.|++.+++|++|....+.||..++.++..+.++-.+-..+|.-.++.. .+.+....+|..+-+
T Consensus       206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  206 TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            445678899999999999999999999999999999999999999999998877775 455555566766533

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.41  E-value=0.048  Score=50.86  Aligned_cols=118  Identities=20%  Similarity=0.182  Sum_probs=82.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .......+..+...|++++|.+.-.++++-.                .++.    +..+ .-..+.+++..=++..++.+
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----------------~D~~----L~~~-~~~l~~~d~~~l~k~~e~~l  321 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ----------------WDPR----LCRL-IPRLRPGDPEPLIKAAEKWL  321 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------------cChh----HHHH-HhhcCCCCchHHHHHHHHHH
Confidence            4444455666778889999999999988721                2222    1111 12246688888888888888


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +..|+++-.++.+|+.++..+.|.+|...|+.|++.-|+ ...+..++.+..++.+-.++
T Consensus       322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence            888888888888888888888888888888888888774 34555666666665544443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.40  E-value=0.12  Score=42.01  Aligned_cols=85  Identities=24%  Similarity=0.238  Sum_probs=63.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCc----------------------hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          269 NSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       269 nla~~~~~l~~~~~Al~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      ..|......++...++..+.+++.+....                      ..++.+++.++...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            33555556778888888888888653211                      45677788889999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          327 LEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       327 l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++|.+..++..+..+....++..++.+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999888887765544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.39  E-value=0.039  Score=53.11  Aligned_cols=116  Identities=16%  Similarity=0.050  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCcc---chh----HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--c
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEG---KSS----SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--N  297 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~--~  297 (361)
                      -..+|.++|++|++..+...........   ...    ..-....-+-..+|.|..++|+.++|++.+...++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            4688999999999877654333211111   000    011122455678999999999999999999999988775  4


Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKL-EPNDGGIKKELAVAK  342 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~P~~~~~~~~l~~~~  342 (361)
                      .-.++++-.++..+++|.++.+.+.+.-++ -|....+-...+.++
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            669999999999999999999999987544 255554444444433

The molecular function of this protein is uncertain.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.28  E-value=0.0065  Score=52.50  Aligned_cols=60  Identities=25%  Similarity=0.312  Sum_probs=56.0

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ...+.++.+.|.+.+.+|+++-|++...|+|+|......|+++.|.+.|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678999999999999999999999999999999999999999999999999999864

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.24  E-value=0.054  Score=58.33  Aligned_cols=29  Identities=3%  Similarity=-0.150  Sum_probs=18.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~  240 (361)
                      ...+..+-..+.+.|++++|.+.|.+...
T Consensus       542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        542 RVVFNALISACGQSGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44566666666666666666666666543

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.19  E-value=0.06  Score=57.96  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=43.7

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR-  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~-  292 (361)
                      .+..+-..+.+.|++++|++.|.+....-                +.| +...|+.+..+|.+.|++++|.+.+.+... 
T Consensus       509 TynaLI~gy~k~G~~eeAl~lf~~M~~~G----------------v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~  571 (1060)
T PLN03218        509 TFGALIDGCARAGQVAKAFGAYGIMRSKN----------------VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE  571 (1060)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHcC----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34444445566666666666666554310                111 122344444444444555555544444432 


Q ss_pred             ---cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          293 ---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       293 ---~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                         +.|+ ...|..+-.+|...|++++|.+.|++..+.
T Consensus       572 ~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        572 THPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             cCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence               2222 233333444444444444444444444444

>PLN03077 Protein ECB2; Provisional

Probab=96.18  E-value=0.057  Score=57.38  Aligned_cols=61  Identities=7%  Similarity=-0.036  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      .|..+-.++..-++.+.+....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus       659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            3444444445556666666677777777777777777777777777777777776655543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.15  E-value=0.0085  Score=54.00  Aligned_cols=80  Identities=16%  Similarity=0.090  Sum_probs=71.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.|......+....+.|+.++|...|+.|+.                  +.|.+..++..+|.....-++.-+|-++|-+
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla------------------laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~  175 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALA------------------LAPTNPQILIEMGQFREMHNEIVEADQCYVK  175 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHh------------------cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence            3455556667778899999999999999999                  8899999999999999888999999999999


Q ss_pred             HhhcCCCchhhHhHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a  307 (361)
                      ||.++|.|.+|+.+++..
T Consensus       176 ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  176 ALTISPGNSEALVNRART  193 (472)
T ss_pred             eeeeCCCchHHHhhhhcc
Confidence            999999999999998864

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.11  E-value=0.025  Score=54.23  Aligned_cols=104  Identities=23%  Similarity=0.397  Sum_probs=69.8

Q ss_pred             eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF   96 (361)
Q Consensus        17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (361)
                      .-.+.+||..+ +|.++++|+.+.+.+           .++   +-+...-|            .+..+.-|...+.|++
T Consensus       200 fTy~evE~~~~-~p~s~EH~la~~~~G-----------~~~---Vd~~tsTf------------i~d~~L~g~~~p~En~  252 (503)
T TIGR03268       200 FTYVEVELDPN-APVSVEHFLALMEDG-----------TFR---VDYRTSTF------------ISDDSLRGLDKPEENI  252 (503)
T ss_pred             EEEEEEEEcCC-CChhHHHHHHHHhCC-----------eEE---Eeeeecce------------EecccccCccCCcccc
Confidence            45788898777 999999999999876           332   11111111            1122334556677775


Q ss_pred             ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098           97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        97 ~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      .  .-.+|+|++.+.|..  ....||-..+.+ -.-.|+|+|+|+.|+|+++-...
T Consensus       253 ~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       253 E--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             C--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence            3  346799999998743  456788776654 23469999999999999886544

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.00  E-value=0.039  Score=53.09  Aligned_cols=104  Identities=26%  Similarity=0.419  Sum_probs=70.4

Q ss_pred             eeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098           17 EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF   96 (361)
Q Consensus        17 ~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (361)
                      .-.+.+||..+ +|.++++|+.+.+.+           .|+   +-+...-|            .+..+.-|...+.||+
T Consensus       203 fTy~eve~~~~-~p~s~EH~la~~~~G-----------~f~---Vd~~tstf------------I~d~~L~g~~~p~En~  255 (508)
T PRK00969        203 FTYVEVELDPG-APKSVEHFLALLEDG-----------TFE---VDFETSTF------------IADDRLQGLKIPEENF  255 (508)
T ss_pred             EEEEEEEEcCC-CCchHHHHHHHHhCC-----------eEE---Eeeeecce------------EeeccccCccCCcccc
Confidence            45788898877 999999999999876           332   11111111            1122334666677776


Q ss_pred             ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098           97 ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        97 ~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      .  .-.+|+|++.+.|..  ....||-..+.+ -.-.|+|+|+|+.|+|+++-...
T Consensus       256 ~--~R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        256 E--PRRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             C--ccccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence            3  345799999998744  456788776654 23469999999999999886544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.96  E-value=0.046  Score=56.62  Aligned_cols=109  Identities=12%  Similarity=-0.069  Sum_probs=65.2

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--C
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--G  294 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--~  294 (361)
                      .+-..|.+.|++++|.+.|++...                     .+...|+.+...|.+.|++++|+..+.+..+.  .
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~---------------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPE---------------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC---------------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            344567778888888888775422                     23456667777777777777777777666543  2


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLE-PNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~  347 (361)
                      | +...|..+..++..+|++++|.+.+...++.. +.|..+...+.....+.++
T Consensus       323 p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~  375 (697)
T PLN03081        323 I-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR  375 (697)
T ss_pred             C-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence            3 33455666666666666666666666666554 2344444444444444333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.84  E-value=0.041  Score=42.21  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=69.7

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHH----hcCChHHHHHHHHHHhhc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL----KLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~----~l~~~~~Al~~~~~al~~  293 (361)
                      ++..++.+|++-+|++..+..+..-.      ....  ..-+......++..+|...-    +..-.-.+++.+.++..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~------~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG------EDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc------CCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc
Confidence            45678899999999999999987211      0000  00133333344444443211    111145688999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      .|..+..+|.+|.-+-....|+++..-.++++.+.
T Consensus        74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999999988777888889988888888764

>PLN03077 Protein ECB2; Provisional

Probab=95.73  E-value=0.078  Score=56.32  Aligned_cols=138  Identities=14%  Similarity=0.016  Sum_probs=79.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC-------------CCCccch---hHHH-----HHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE-------------GIDEGKS---SSLR-----KTKSQIFTN  269 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~---~~~~-----~~~~~~~~n  269 (361)
                      ....|..+...+.+.|+.++|++.|++..+.  ...|+.             ...++-.   ..+.     .-+...|..
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            3456888888899999999999999987651  000000             0000000   0000     011234555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +..++.+.|++++|.+.+++. .+.|+ +..|-.+-.++..-++.+.|....+++++++|++...+..+..+....++.+
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~  708 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD  708 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH
Confidence            666666666666666666553 23442 3444444445555666666666666777777777777777777766655554


Q ss_pred             HHH
Q 018098          350 EQE  352 (361)
Q Consensus       350 ~~~  352 (361)
                      ++.
T Consensus       709 ~a~  711 (857)
T PLN03077        709 EVA  711 (857)
T ss_pred             HHH
Confidence            433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=0.11  Score=45.66  Aligned_cols=100  Identities=13%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---  293 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~---  293 (361)
                      ..+-...+.-+.++|+..|++++.++..            ......-...+...+.++.+++.|.+|-..+.+-...   
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~------------~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEE------------DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhc------------cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence            3444455666778888888888875531            1134445567777888888999999987777665422   


Q ss_pred             ---CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          294 ---GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       294 ---~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                         -++..+++.-.-.+|+..++|..|..+++...++.
T Consensus       183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence               23445666655666777789999999999887764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.65  E-value=0.12  Score=50.86  Aligned_cols=83  Identities=19%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      .-|...-.+...|.++...|+.++|++.+++++......    .-+++.+|.++..+.+|++|..++.+..+.+.-.+..
T Consensus       262 ~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~  341 (468)
T PF10300_consen  262 RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF  341 (468)
T ss_pred             hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence            567778888999999999999999999999999654433    4578889999999999999999999999988776655


Q ss_pred             HHHHHHH
Q 018098          335 KKELAVA  341 (361)
Q Consensus       335 ~~~l~~~  341 (361)
                      +..+.-+
T Consensus       342 Y~Y~~a~  348 (468)
T PF10300_consen  342 YAYLAAA  348 (468)
T ss_pred             HHHHHHH
Confidence            4444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.033  Score=51.52  Aligned_cols=106  Identities=25%  Similarity=0.413  Sum_probs=69.2

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      .-.-.+.+||.++ +|.++++|++|.+.+           -+      ||.-         +..+-.+..+..+.+.+.|
T Consensus       200 rifTy~eve~s~n-sP~saEH~lalmedG-----------~l------ri~~---------~tntfis~~~lq~~~~~~e  252 (512)
T COG4070         200 RIFTYFEVELSRN-SPKSAEHFLALMEDG-----------TL------RIDV---------TTNTFISDDTLQEEKVPEE  252 (512)
T ss_pred             EEEEEEEEEeCCC-CchhHHHHHHHhhcc-----------eE------EEEE---------eccceeeccccccccCChh
Confidence            3456788999888 999999999998865           11      2210         0011112223346667778


Q ss_pred             ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098           95 NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        95 ~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      |+.+.  .+|.+++.|.|-.  ...-+|.-.+-+. .-.|.|+|+|++|+++++-...
T Consensus       253 n~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         253 NFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             hhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            87654  4799999888743  3456666544331 2358999999999998875544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.61  E-value=0.072  Score=51.19  Aligned_cols=114  Identities=20%  Similarity=0.327  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcccc
Q 018098           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (361)
Q Consensus        19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (361)
                      =|.|+||.+.||.|+.-|++..--....   .|      -.++|=..++.++-=|+.          -++..+-+||.+-
T Consensus       376 vi~IeLydd~AP~s~~yFRk~tGL~~~~---VG------~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~  436 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFTGLKTKP---VG------RLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE  436 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhcCCcccc---cc------eeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence            5789999999999999999975432110   11      134555667754443332          1344466777766


Q ss_pred             CCCCceEEEeecCCC---CCCCcceEEe--cCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098           99 KHERKGMLSMANAGP---NTNGSQFFIT--TTRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        99 ~~~~~g~l~~~~~~~---~~~~sqF~I~--~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      ....+|.|+|.|...   ...|-.|-=+  ++|. ..+++++ ++|+|+++++.|+++..
T Consensus       437 ~~V~ag~IgvTN~a~k~~G~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       437 DKVEAGVIGVTNQACKHVGMIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE  495 (503)
T ss_pred             CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence            677889999887642   1222222111  2332 2466654 45999999999887755

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.51  E-value=0.025  Score=34.81  Aligned_cols=29  Identities=21%  Similarity=0.061  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .++.|+|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777754

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=0.47  Score=41.51  Aligned_cols=108  Identities=16%  Similarity=0.112  Sum_probs=78.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++-+..-||.+--.++|..|=..|.+|.++-....            ........|.-.+.||- ..+..+|+...+++
T Consensus        33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~------------skhDaat~YveA~~cyk-k~~~~eAv~cL~~a   99 (288)
T KOG1586|consen   33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG------------SKHDAATTYVEAANCYK-KVDPEEAVNCLEKA   99 (288)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC------------CchhHHHHHHHHHHHhh-ccChHHHHHHHHHH
Confidence            455555566666667889999999998887332110            12234567787888874 45999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 018098          291 MRDGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~  331 (361)
                      +++-.+-      ++-+.-+|..|..- .++++|+..|+.+-+.-..+
T Consensus       100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen  100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence            9886543      45566778888764 89999999999998876543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.22  Score=45.70  Aligned_cols=58  Identities=10%  Similarity=-0.078  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      +.--+|.+..+.|-|++|.+..++|++++|.+..+...++-++...+++.++.+...+
T Consensus       177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            3344555666666666666666666666666666666666666666666666665544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.48  E-value=0.023  Score=54.31  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHh-hhccccccCCCCccchhH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEKEGIDEGKSSS-LRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ....+.++|-++|+.+.|.-++.+|.+|++ .+.-+...  ..+....+ .......+++|.|..|+..|+.-.|-+.+.
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g--~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG--LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc--CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            345568999999999999999999999996 22211111  11111111 233456789999999999999999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhc
Q 018098          289 FAMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l  311 (361)
                      ++...--.|+..|.|+|.+..+.
T Consensus       360 ~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  360 KAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Confidence            99999889999999999988753

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.30  E-value=0.084  Score=37.76  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=55.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+....+.|..+|.+.+.++|+..++++|+-..               -.+....++--+..+|...|+|.+++.+...=
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466788899999999999999999999998332               23456677888889999999999999888766


Q ss_pred             hhc
Q 018098          291 MRD  293 (361)
Q Consensus       291 l~~  293 (361)
                      +.+
T Consensus        70 ~~~   72 (80)
T PF10579_consen   70 LEI   72 (80)
T ss_pred             HHH
Confidence            544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.26  E-value=0.38  Score=43.90  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHHhcchhHH-hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          213 DSIKVFGNEHYK-KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       213 ~~~~~~G~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ..+...|..-+. .++.+.|...|+.+++                  .-+.+...|......++++++.+.|...+++++
T Consensus        36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk------------------~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i   97 (280)
T PF05843_consen   36 HVYVAYALMEYYCNKDPKRARKIFERGLK------------------KFPSDPDFWLEYLDFLIKLNDINNARALFERAI   97 (280)
T ss_dssp             HHHHHHHHHHHHTCS-HHHHHHHHHHHHH------------------HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            345555555455 6777779999999999                  667778888888899999999999999999999


Q ss_pred             hcCCCch---hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098          292 RDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       292 ~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                      ..-|...   ..|-+...-=...|+.+......+++.++.|.+..+..
T Consensus        98 ~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen   98 SSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             CTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            8766554   35555555556679999999999999999988654443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.21  E-value=0.072  Score=52.16  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=93.1

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~  303 (361)
                      -+|+..+|+.+|..|+-....                -..-.++..+|.+..+.|.-.+|--.+..|+.-.|.-..-+|-
T Consensus       225 ~~G~~~~A~~Ca~~a~hf~~~----------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~  288 (886)
T KOG4507|consen  225 IKGEPYQAVECAMRALHFSSR----------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT  288 (886)
T ss_pred             HcCChhhhhHHHHHHhhhCCc----------------ccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence            478899999999999974421                1233567889999999999999988888888888877777999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGI---KKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       304 ~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~---~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      +|+++.+++++.....+|..+.+..|.....   ......|+.++.+.-+++++..+.|
T Consensus       289 l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~  347 (886)
T KOG4507|consen  289 LGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT  347 (886)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999974322   3444455666666666665555544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=1.1  Score=39.60  Aligned_cols=108  Identities=12%  Similarity=0.055  Sum_probs=72.2

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..-++.+-..++|++|..+..+|.+.-+.            ...--.-+.+|-..+...-++..+.++...+++|.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEn------------nrslfhAAKayEqaamLake~~klsEvvdl~eKAs   98 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN------------NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS   98 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            444555566666788999999999999862210            00111234556667777778899999999999999


Q ss_pred             hcC-----CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          292 RDG-----DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~-----p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      .+.     |+-+..-.-+|-=....-+.++|++.|++++.+-..+
T Consensus        99 ~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            764     3333333333333455678999999999998876543

>PRK10941 hypothetical protein; Provisional

Probab=95.05  E-value=0.1  Score=47.12  Aligned_cols=79  Identities=11%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ..-+.++=..+.+.++|+.|+.+-+..+.                  +.|.++.-+.-+|.+|.+++.+..|+.+++.-+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~------------------l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl  242 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQ------------------FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV  242 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            34456666788999999999999999998                  888888889999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAY  308 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~  308 (361)
                      +..|+.+.+-.-+.++.
T Consensus       243 ~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        243 EQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HhCCCchhHHHHHHHHH
Confidence            99999988766665543

>PRK00969 hypothetical protein; Provisional

Probab=94.90  E-value=0.16  Score=49.04  Aligned_cols=113  Identities=19%  Similarity=0.302  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCCcccc
Q 018098           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFEL   98 (361)
Q Consensus        19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   98 (361)
                      =|.|+||.+.||.|+.-|+.+.--....   .|      -.++|=..++.++-=|+..          ++..+-+||.+-
T Consensus       379 vi~IeLydd~AP~s~~yFR~~tGL~~~~---VG------~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~  439 (508)
T PRK00969        379 LIEIELYDDKAPRTVWYFRKVTGLKTKP---VG------KLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPE  439 (508)
T ss_pred             EEEEEEcCcCCchHHHHHHHhcCCcccc---cc------eeEEEEEeCCeEEEccChh----------hccccCCCCCCC
Confidence            5789999999999999999986432110   11      1355556677555533322          344466787766


Q ss_pred             CCCCceEEEeecCCCC---CCCcceEE--ecCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098           99 KHERKGMLSMANAGPN---TNGSQFFI--TTTRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        99 ~~~~~g~l~~~~~~~~---~~~sqF~I--~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      ....+|.|+|.|....   ..|=.|-=  -++|. ..++++ -++|+|+ +++.|+++..
T Consensus       440 ~~V~ag~IgvTN~a~k~~G~iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        440 DKVKAGEIGVTNMAAKYKGMIGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             CccccceEeeechhhhcCceEEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhccccc
Confidence            6778899998876421   11211111  02332 245564 4679999 9988887755

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.85  E-value=0.15  Score=47.84  Aligned_cols=114  Identities=20%  Similarity=0.170  Sum_probs=88.0

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..|...|+++.|++.|.++-.|+.               .......++.|+-.+-..+++|...+.+-.+|..
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT---------------s~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s  215 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCT---------------SAKHVINMCLNLILVSIYMGNWGHVLSYISKAES  215 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhc---------------chHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence            3567789999999999999999999877664               4556778899999999999999999999999987


Q ss_pred             cC----C----CchhhHhHHHHHHHhcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHH
Q 018098          293 DG----D----DNVKALFRQGQAYMALNDVDAAVESFEKALK--------LEPNDGGIKKELAVA  341 (361)
Q Consensus       293 ~~----p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~--------l~P~~~~~~~~l~~~  341 (361)
                      .-    .    -.+++....|.+.+.+++|+.|.++|-.+..        +.|.|..+.-.+..+
T Consensus       216 t~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL  280 (466)
T KOG0686|consen  216 TPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL  280 (466)
T ss_pred             CchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence            62    1    1256777788899999999999998876533        235555555554443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.83  E-value=0.17  Score=37.93  Aligned_cols=65  Identities=20%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p  295 (361)
                      ..+.++|..|++.+.+..++.......         ........++.++|.++...|++++|+..+++|+++-.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~---------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNS---------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccc---------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            457899999999999988855321000         01223455678899999999999999999999997654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.81  E-value=0.044  Score=47.55  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=55.4

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      ..+.+.++.+.|.+.|.+++.                  +.|....-|..++....+.|+++.|...+.+.|+++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~------------------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE------------------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh------------------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345678999999999999999                  788889999999999999999999999999999999987

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.68  E-value=1.4  Score=40.07  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=77.2

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhc----CCC
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRD----GDD  296 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~----~p~  296 (361)
                      ..++|+++.|..+|.|+-.......          .......+..++|.|....+.+ +++.|+.+.++|+++    .+.
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~----------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLD----------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCC----------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            4578999999999999977443111          1134456778999999999999 999999999999977    321


Q ss_pred             c----------hhhHhHHHHHHHhcCCHHH---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          297 N----------VKALFRQGQAYMALNDVDA---AVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       297 ~----------~ka~~~~a~a~~~l~~~~~---A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      .          .+.+..++.+|...+.++.   |...++.+-.-.|+.+.+....-++
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i  130 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI  130 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            1          4677778999999887764   4444444444457666665333333

It is also involved in sporulation [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.63  E-value=0.083  Score=48.42  Aligned_cols=81  Identities=11%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----hhh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----VKA  300 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~----~ka  300 (361)
                      .|-|++|.+.-.+|++                  +++.+..+....|.++...+++.++.+...+--..-...    +.-
T Consensus       188 ~g~y~dAEk~A~ralq------------------iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN  249 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQ------------------INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN  249 (491)
T ss_pred             hccchhHHHHHHhhcc------------------CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence            4555555555555555                  555555555555555555556665555544332211111    122


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      |...|..+..-+.|+.|+..|.+
T Consensus       250 yWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  250 YWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHhhhcccchhHHHHHHHH
Confidence            33345555555566666555554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.61  E-value=0.25  Score=44.71  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      .+......++..++..+...++++.++...++.+.++|.+.++|.++-.+|+..|+...|+..|++..++
T Consensus       147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3667788899999999999999999999999999999999999999999999999999999999988774

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.57  E-value=0.074  Score=32.62  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=26.3

Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.43  E-value=0.48  Score=51.08  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ...|..++...++..+-++|.....+||..-|.  ..+.....|+.-+..|+-+.+...|+-.+.-.|.-.++|..+...
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            344555555555555555555555555555554  344444555555555555555555555555555555555554444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.42  E-value=0.49  Score=51.05  Aligned_cols=84  Identities=15%  Similarity=0.060  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAK  342 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~  342 (361)
                      .+|..|+.+|.+-+.+++|.+.++.-++.-....+.|...|..++..++-+.|...+.+|++.-|.  +..+....+.+.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            467888999999999999999999999776688999999999999999999999999999999997  455555555555


Q ss_pred             HHHHHH
Q 018098          343 KKIHER  348 (361)
Q Consensus       343 ~~~~~~  348 (361)
                      -+..+.
T Consensus      1611 Fk~GDa 1616 (1710)
T KOG1070|consen 1611 FKYGDA 1616 (1710)
T ss_pred             hhcCCc
Confidence            444443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.42  E-value=0.1  Score=47.27  Aligned_cols=85  Identities=12%  Similarity=0.035  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR-QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      -+.++..|...+....+.+.|.+.-..|.++|..+|.|+..|.. -+--+...++++.|.+.|.++++++|.++.+|...
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            34566778877777788899999999999999999999999887 45568889999999999999999999999998877


Q ss_pred             HHHHHH
Q 018098          339 AVAKKK  344 (361)
Q Consensus       339 ~~~~~~  344 (361)
                      -+.+..
T Consensus       183 fr~El~  188 (435)
T COG5191         183 FRMELM  188 (435)
T ss_pred             HHHHHH
Confidence            665443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.39  E-value=0.26  Score=44.35  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=62.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       255 ~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      +...+.......+...|..|.+.|.+.+|++.|++++.++|-+...+.-+-..+..+|+--.|+..|++..+
T Consensus       270 ererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         270 ERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            334566677777778888999999999999999999999999999999999999999998888888877543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.38  E-value=1  Score=38.32  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=81.5

Q ss_pred             hcchhHHhhhHH---HHHHHHHHHHhhhccccccCCCCccchhHHHHHH------HHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          218 FGNEHYKKQDYK---MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK------SQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       218 ~G~~~~~~g~y~---~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .|..++...+-+   +|-..|++++..+..-.+   ........+...+      .-+-..+|..+...+++++|+..++
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~  113 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLK  113 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            355555555444   788889999886642211   1111111122212      1233556778888999999999999


Q ss_pred             HHhhcCCC-c--hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDD-N--VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       289 ~al~~~p~-~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      .++..-.+ +  .-+-.|+|.++..+|++++|+..+.....- .-...+....+.+...+.+.+++.+
T Consensus       114 ~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         114 QALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             HHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHH
Confidence            99965444 3  456688999999999999999888653221 1123345556666666555554443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.37  E-value=0.083  Score=32.27  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=24.1

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      .+|.++|.+....++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.32  E-value=0.49  Score=44.25  Aligned_cols=118  Identities=18%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHh-hhcccccc--------------CCC-CccchhHHHHHHHHHHHHHHHHHHh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALR-YLDICWEK--------------EGI-DEGKSSSLRKTKSQIFTNSSACKLK  276 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~-~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~nla~~~~~  276 (361)
                      ....+.+..+...|+-.+|+...+..+. .+......              ... ..............++..+|.....
T Consensus       185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~  264 (352)
T PF02259_consen  185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE  264 (352)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence            3445556666666677777777766665 22211000              000 0000122345566788888888888


Q ss_pred             c------CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCC
Q 018098          277 L------GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV-----------------DAAVESFEKALKLEPN  330 (361)
Q Consensus       277 l------~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~P~  330 (361)
                      +      +..++++..|.+|+.++|.+.++|+..|..+..+=+.                 ..|+..|-+++.+.|.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  265 LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            8      8899999999999999999999999999887654222                 3588888888888876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.25  E-value=0.41  Score=50.63  Aligned_cols=123  Identities=18%  Similarity=0.179  Sum_probs=88.0

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc----C---ChHHHHHHHH
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----G---DLKGALLDTE  288 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~---~~~~Al~~~~  288 (361)
                      .....++...+.|+.|+..|++...-.+.               ...--.+....|.+.+..    +   .+.+|+.-++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPG---------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFS  543 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCC---------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHH
Confidence            34456778899999999999997663321               111223555666665543    2   3666776666


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +.-. .|.-+--|..+|.+|..+|+|++-+++|..|++.-|+.+.+-.....+--++.+.-...++
T Consensus       544 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  608 (932)
T PRK13184        544 YLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRR  608 (932)
T ss_pred             HhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            5443 3445667888899999999999999999999999999999988888887777766544433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.25  E-value=0.37  Score=42.08  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      -.++.|-.+...|+......-+..|+..|.+|+.       .+....     ..-....+.+-+|..+.++|++++|+.+
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~-------~e~~~~-----~~~~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE-------NEDFPI-----EGMDEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH-------hCcCCC-----CCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3444566666666666666667777777777776       111100     1112345778899999999999999999


Q ss_pred             HHHHhhcCCCch-hhHhHHHH
Q 018098          287 TEFAMRDGDDNV-KALFRQGQ  306 (361)
Q Consensus       287 ~~~al~~~p~~~-ka~~~~a~  306 (361)
                      +.+++.....+. ..+..+|.
T Consensus       188 fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  188 FSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHcCCCCCCcHHHHHHHH
Confidence            999998764443 35555554

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=0.2  Score=46.58  Aligned_cols=114  Identities=18%  Similarity=0.275  Sum_probs=67.5

Q ss_pred             EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcE--EEeCCCCCCCCCCCCccCCCCCCCCcc
Q 018098           19 RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFM--IQGGDISAGDGTGGESIYGLKFEDENF   96 (361)
Q Consensus        19 ~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~--iq~G~~~~~~~~~~~~~~~~~~~~e~~   96 (361)
                      =|.||||.+.||.++.-|+.+..-. ..      |  --....|=+.++..  .--|+.          .+++.+.+||.
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~-~k------p--VGkL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~  437 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLK-TK------P--VGKLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT  437 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcccc-cc------c--ccceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence            4789999999999999999976532 11      1  11235666777732  222332          23555677777


Q ss_pred             ccCCCCceEEEeecCC-CCC--CCcceEE--ecCCC-CCCCCCceEEeEEEeChHHHHHHhc
Q 018098           97 ELKHERKGMLSMANAG-PNT--NGSQFFI--TTTRT-SHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        97 ~~~~~~~g~l~~~~~~-~~~--~~sqF~I--~~~~~-~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      .-....+|.|++.|.. ++.  .|-..-=  -++|. ..+.+ .-++|++++|.+-+..|..
T Consensus       438 P~d~Ve~g~iGvTN~a~r~~GmIGVRL~dsdefGPTGE~Fe~-TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         438 PADTVEAGEIGVTNQAARHMGMIGVRLEDSDEFGPTGEKFEG-TNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             chhheecccccccccchhccceeEEEeccccccCCCCCcccc-ceeehhhccChHHhccccc
Confidence            6666677777766543 221  1111000  01222 12444 5577999999999988866

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=94.04  E-value=0.34  Score=37.79  Aligned_cols=117  Identities=16%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF----  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~----  289 (361)
                      .+..+|+..++.+++-.|+-+|++|+.+.+..+.....+.   .++--..+....|||..+..+|+-+-.+.|.+-    
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el---~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIEL---EDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccH---HHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4566888999999999999999999997766532222221   124445566688999999999999999998864    


Q ss_pred             HhhcCCCchhhHhHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      ++.+-|..+..-   ..+ -..+|.-..|+-+|   ++..| |+.+...+..
T Consensus        80 VltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~  124 (140)
T PF10952_consen   80 VLTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH  124 (140)
T ss_pred             HHHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence            456777654321   122 23456666666555   55677 5666555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.02  E-value=0.34  Score=45.88  Aligned_cols=104  Identities=21%  Similarity=0.048  Sum_probs=76.3

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---------hc--
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM---------RD--  293 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al---------~~--  293 (361)
                      ...|.++-..|..++.....      ..=-......|..+..+..++.++..+|+++.|.+.+++||         ..  
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp------~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~   80 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDP------NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP   80 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCH------HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34566666666666652110      00000012567788889999999999999999999999998         22  


Q ss_pred             ---CCC------------c---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHH
Q 018098          294 ---GDD------------N---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGI  334 (361)
Q Consensus       294 ---~p~------------~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~  334 (361)
                         ++.            |   ..++++....+.+.|.+..|++.++-.+.+||. |+-.
T Consensus        81 ~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen   81 FRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             hhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence               222            1   568899999999999999999999999999998 7643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=2.1  Score=41.38  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.-+|-....-+.|+.|..+|..|++...               -....+-+..|+|..|+..++-+.-    .++
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~---------------~~dl~a~~nlnlAi~YL~~~~~ed~----y~~  426 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE---------------SIDLQAFCNLNLAISYLRIGDAEDL----YKA  426 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh---------------HHHHHHHHHHhHHHHHHHhccHHHH----HHH
Confidence            577778888888889999999999999998543               2344677889999999997765432    233


Q ss_pred             h-hcCCCc----------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          291 M-RDGDDN----------VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l-~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      + .+.|.|          .-++|-.|.-.+..+++.||...+.+.++..
T Consensus       427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            3 345553          4577888888899999999999999999987

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.56  E-value=0.6  Score=36.36  Aligned_cols=75  Identities=17%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      |-.+-.+.-.+...|+|++++..-.++|.|.+..-+.+       +.--...+.+.+++|.++..+|+.++|+..++++-
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            45566677778889999999999999999887532222       12345677788999999999999999999999887


Q ss_pred             hc
Q 018098          292 RD  293 (361)
Q Consensus       292 ~~  293 (361)
                      ++
T Consensus       128 EM  129 (144)
T PF12968_consen  128 EM  129 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.48  E-value=0.71  Score=34.26  Aligned_cols=39  Identities=18%  Similarity=0.054  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      .+|.+..+.+.+|.+++..|++++|++.+-.+++.++.+
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            788999999999999999999999999999999999877

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.35  E-value=0.36  Score=36.11  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCc---------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          274 KLKLGDLKGALLDTEFAMRDGDDN---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       274 ~~~l~~~~~Al~~~~~al~~~p~~---------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      ..+.++|.+|++.+.+.+......         .-++.++|..+...|++++|+..+++|+++...
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            457899999988888877543222         467888999999999999999999999998653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.22  E-value=0.97  Score=37.26  Aligned_cols=83  Identities=16%  Similarity=0.006  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      -...+..+..+-+..++.+++...++..-.+.|..+..-.--|..+...|+|.+|+..|+...+-.|..+.....++-|.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            34455556666666677777776666666777777777777777777777777777777777666676666666666665


Q ss_pred             HHH
Q 018098          343 KKI  345 (361)
Q Consensus       343 ~~~  345 (361)
                      ..+
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.20  E-value=3.4  Score=34.13  Aligned_cols=112  Identities=13%  Similarity=-0.060  Sum_probs=82.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+.+........++.+++...+.-.-.                  +.|....+-.--|..++..|+|.+|+..+..+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrv------------------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRV------------------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45566677777778888888876654433                  778888888889999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      +-.|..+-+---++.|+..+++.+ =..+-..+++-.+ |+........+..
T Consensus        72 ~~~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   72 ERAPGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALLA  121 (160)
T ss_pred             ccCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence            999988877778889999998764 1112233444443 6666655555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.20  E-value=4.6  Score=34.09  Aligned_cols=70  Identities=17%  Similarity=0.109  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      +.....++..+|.-|.+.|++++|++.|.++.......   ...++++-.+....+++.....++.++-.+-.
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            44455789999999999999999999999988765432   56778888889999999999999999977653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.06  E-value=3.2  Score=38.65  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGD------------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~------------~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      -+|.+..+|..+....-.+-.            .+..+..+++||+.+|++.+.+..+=.+...+.+-++..+-+++++.
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            677888888888776655533            46678899999999999999988888888899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q 018098          327 LEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       327 l~P~~~~~~~~l~~~~~~  344 (361)
                      .+|++..+|..+-.....
T Consensus        94 ~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HCCCChHHHHHHHHHHHH
Confidence            999998888776555443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.03  E-value=0.3  Score=29.43  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=19.3

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 018098          299 KALFRQGQAYMALNDVDAAVES--FEKALKLEPND  331 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~P~~  331 (361)
                      +.++.+|..+..+|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3456666666777777777777  33666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.85  E-value=1.4  Score=41.44  Aligned_cols=97  Identities=18%  Similarity=0.019  Sum_probs=73.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +.++.-.+....-.|+|+.|...|+-.+.                  .......-+..|=.-...+|..+.|+.|..+|-
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~------------------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa  181 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD------------------DPETRLLGLRGLYLEAQRLGAREAARHYAERAA  181 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc------------------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            44455566677789999999999998886                  111221112222233346899999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      ...|.-..++.-.-...+..|+|+.|++..+....
T Consensus       182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            99999999888888889999999999998876544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.74  E-value=0.6  Score=46.45  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      ++-|-|.-.++.++|..+++.|...++.-|.+      .|..-.++.||..+.+.+.|.+.++.|-+.+|.++-.+...-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            44566778889999999999999999876654      678888899999999999999999999999999876555544


Q ss_pred             HH
Q 018098          340 VA  341 (361)
Q Consensus       340 ~~  341 (361)
                      .+
T Consensus       436 ~~  437 (872)
T KOG4814|consen  436 QS  437 (872)
T ss_pred             HH
Confidence            43

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.71  E-value=1.5  Score=41.02  Aligned_cols=126  Identities=14%  Similarity=0.169  Sum_probs=95.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...+..+.+.|+++.|.....++..+...              .......+..-.|......|+-.+|+......
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~--------------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPS--------------SESLLPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc--------------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5677888999999999999999999988763211              01113445566677777888888888888777


Q ss_pred             hhc--C--------------------------------CCchhhHhHHHHHHHhc------CCHHHHHHHHHHHHHhCCC
Q 018098          291 MRD--G--------------------------------DDNVKALFRQGQAYMAL------NDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~P~  330 (361)
                      +..  .                                ...+++++.+|.-...+      +..++++..|.++.+++|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence            760  1                                01157888888877777      8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q 018098          331 DGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       331 ~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ....+...+.....+-+...
T Consensus       291 ~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  291 WEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            88888888888777655444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.45  E-value=1.1  Score=43.08  Aligned_cols=120  Identities=11%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CC-----hHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GD-----LKGAL  284 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~-----~~~Al  284 (361)
                      .......|..++..|+|.+|+..|+..|..+.-+.-..   .++..........|.-.+-.+-+++  +.     .++..
T Consensus       204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~---~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k  280 (422)
T PF06957_consen  204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVES---REEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK  280 (422)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence            34456679999999999999999999998765432222   2222233333333332222222222  22     12222


Q ss_pred             HHHHHHh-----hcCCCchhhHhHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          285 LDTEFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       285 ~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      ..++-|.     ++.|..--.-.|.|. ..+..++|..|....++.|++.|..+.+
T Consensus       281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a  336 (422)
T PF06957_consen  281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA  336 (422)
T ss_dssp             HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence            2233332     445544444445554 3567899999999999999999976543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.43  E-value=0.39  Score=49.36  Aligned_cols=97  Identities=18%  Similarity=0.074  Sum_probs=71.8

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~  296 (361)
                      -.|-.+++.|++++|..+.+ ++..                 ..+++-..+--+-.||..++++++|...|++++..+|.
T Consensus        48 LkaLsl~r~gk~~ea~~~Le-~~~~-----------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKLLE-ALYG-----------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhcCchhHHHHHh-hhcc-----------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            35678889999999995444 3331                 22223445566789999999999999999999999998


Q ss_pred             chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       297 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                       .+-++.+-.+|.+-+.|.+=.+.--+..+..|.++
T Consensus       110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence             88888888889888877654444334445667765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=92.36  E-value=2.1  Score=42.88  Aligned_cols=119  Identities=8%  Similarity=0.050  Sum_probs=65.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.+..|.+-|..-++..+++.|+...++|......-...--+..+..+..--....+|...+..-..+|-++.....|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            36888888888888999999999999998763321110111122222222223344555555555555666666666666


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      .|.+-=-.+....+-|.-+.....+++|-+.|++.+.|.
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence            665544444444444444444444444444444444443

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=92.34  E-value=2.5  Score=37.16  Aligned_cols=119  Identities=16%  Similarity=0.138  Sum_probs=68.4

Q ss_pred             HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHH-HHHHHHHhh-c-CCCch
Q 018098          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGA-LLDTEFAMR-D-GDDNV  298 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A-l~~~~~al~-~-~p~~~  298 (361)
                      |..|+|+.|++.-.-||+.-..+      .+.-..+..-..+.-...-|....+.|. ++-. +..+..+.. . =|+.+
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~------Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v  167 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTM------PDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV  167 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCC------CccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence            56799999999999998832211      1111112333334445555666666665 2222 222222211 1 13334


Q ss_pred             --hhHhHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          299 --KALFRQGQAYM---------ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       299 --ka~~~~a~a~~---------~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                        |.|--.|.++.         ..++...|+..|++|++++|+ .-+.+.+..+..+++..
T Consensus       168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence              44444465552         456889999999999999975 44667777777776643

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.32  E-value=0.19  Score=30.72  Aligned_cols=33  Identities=21%  Similarity=0.458  Sum_probs=28.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      |+.+..+|...+..++|++|+..|++||.+...
T Consensus         1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999995543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.24  E-value=0.48  Score=37.76  Aligned_cols=43  Identities=12%  Similarity=0.113  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG  305 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a  305 (361)
                      .-.+.+.||.-+.++++|+.++.+++..|+.+|+|..|.-..-
T Consensus        70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3457788999999999999999999999999999987765443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.87  E-value=1.5  Score=43.34  Aligned_cols=101  Identities=21%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcCCCchhhHh
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG-ALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~-Al~~~~~al~~~p~~~ka~~  302 (361)
                      ..+....|+.....++.                  .++....++.|++......+..-. ++..++.+....|.+.....
T Consensus        79 ~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          79 PLADSTLAFLAKRIPLS------------------VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             ccccchhHHHHHhhhHh------------------cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            34455555555666665                  778888999999998888776544 45566669999999977666


Q ss_pred             HH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          303 RQ------GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       303 ~~------a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      .+      +.....+++..++...++++.++.|.++.+...+....
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r  186 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR  186 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence            65      88888999999999999999999999877766666653

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.74  E-value=0.75  Score=32.90  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      ..|..+...+..+=+.|+|++|+.+|.+|++++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35777888888899999999999999999998755

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.41  E-value=3.8  Score=37.28  Aligned_cols=106  Identities=24%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             hHHHHHhcchhHH----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH-HHHHHHHHHHHHhc----C---C
Q 018098          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKL----G---D  279 (361)
Q Consensus       212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l----~---~  279 (361)
                      +.....+|..+..    ..++.+|..+|.+|.+                  ..... ..+..+++.+|..-    +   +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~------------------~g~~~a~~~~~~l~~~~~~g~~~~~~~~~  170 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAK------------------LGNVEAALAMYRLGLAYLSGLQALAVAYD  170 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH------------------cCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence            4456667777766    5599999999999987                  21111 34467777777653    1   2


Q ss_pred             hHHHHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      ...|+..+.++-...  ++.+.+++|.+|..    -.++++|..+|+++.+...  ......+.
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            347899999988877  88999999988754    3489999999999999875  55555555

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.33  E-value=0.95  Score=43.36  Aligned_cols=72  Identities=22%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHH
Q 018098          271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN----DGGIKKELAVAKKKIH  346 (361)
Q Consensus       271 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~----~~~~~~~l~~~~~~~~  346 (361)
                      |.-....|+|.+|..++.=..+++| ++.++--+|.+++...+|++|..++.+   +-|+    |..+++.+.-|+..+-
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~~  544 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHLP  544 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhhh
Confidence            4456678999999999999999999 999999999999999999999998864   4443    3456666766666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.30  E-value=4.1  Score=42.09  Aligned_cols=63  Identities=19%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh----------hcCCC----------chhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAM----------RDGDD----------NVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al----------~~~p~----------~~ka~~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      .-|+|.|.-....++.+.|+++|+++=          .-+|.          +.+.|.+.|+-+...|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            457888888888899999999998764          23333          3467777899999999999999999988


Q ss_pred             HHh
Q 018098          325 LKL  327 (361)
Q Consensus       325 l~l  327 (361)
                      -..
T Consensus       939 ~D~  941 (1416)
T KOG3617|consen  939 KDY  941 (1416)
T ss_pred             hhh
Confidence            654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.27  E-value=0.98  Score=46.37  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHh---------------------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAM---------------------RDGDDNVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al---------------------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~  322 (361)
                      ..+|.-.|+.....|+.+.|+.+|..|-                     .-...+-.|.|.+|..|...|++.+|+..|.
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3556666777777899999999998875                     1223356789999999999999999999888


Q ss_pred             HHHHh
Q 018098          323 KALKL  327 (361)
Q Consensus       323 ~al~l  327 (361)
                      +|-.+
T Consensus       992 rAqaf  996 (1416)
T KOG3617|consen  992 RAQAF  996 (1416)
T ss_pred             HHHHH
Confidence            76543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.26  E-value=2.8  Score=39.92  Aligned_cols=56  Identities=13%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      .--.+..||+.+++.+.|+..-.+.+-++|....-+...+.+-+.++.+.++.+.+
T Consensus       230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999988999999999999999888765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.01  E-value=0.71  Score=44.09  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      +-..+.-.|+|..|++..+- +++-.         ........+-.+..++..|.||+.+++|.+|+..+..+|-.=-..
T Consensus       128 LlRvh~LLGDY~~Alk~l~~-idl~~---------~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLEN-IDLNK---------KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhc-cCccc---------chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445567888888876433 22100         011112345667789999999999999999999999998432111


Q ss_pred             hhhHhHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 018098          298 VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPN--DGGIKKELAVA-KKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       298 ~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~-~~~~~~~~~~~k~~~~~~f  360 (361)
                      -..+..+..-+-. .+..|+....+--++.+.|.  +..+...+.+- ..++.+.++-..+.|..+|
T Consensus       198 k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF  264 (404)
T PF10255_consen  198 KNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF  264 (404)
T ss_pred             hhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            1122222222222 35667777788888888885  44444444333 3334444444455566555

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.84  E-value=0.34  Score=26.67  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=14.6

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~  322 (361)
                      .+.+.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.80  E-value=5  Score=37.98  Aligned_cols=110  Identities=19%  Similarity=0.122  Sum_probs=76.9

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k  299 (361)
                      ...+..|+|+.|+...+........   +       ....+.....++.-.+.... --+...|..+..+++++.|+-+.
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vi---e-------~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvP  264 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVI---E-------KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVP  264 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhh---c-------hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccch
Confidence            3456778888888887665541100   0       00122233334443333322 24688999999999999999999


Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +-.--+.+++..|+..++-..++.+-+.+|+ +++...+..+
T Consensus       265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a  305 (531)
T COG3898         265 AAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA  305 (531)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence            9999999999999999999999999999984 5555555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.67  E-value=2.3  Score=42.86  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=73.9

Q ss_pred             HHHhcchhHHh----h-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChHHHHHH
Q 018098          215 IKVFGNEHYKK----Q-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLD  286 (361)
Q Consensus       215 ~~~~G~~~~~~----g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Al~~  286 (361)
                      ...+|..+++.    . ++..|+.+|.+|.+                  +  ....+.+++|.|+..-.   ++..|..+
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~------------------~--g~~~a~~~lg~~~~~g~~~~d~~~A~~y  350 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE------------------L--GNPDAQYLLGVLYETGTKERDYRRAFEY  350 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHh------------------c--CCchHHHHHHHHHHcCCccccHHHHHHH
Confidence            44577777763    2 78889999999976                  2  34457788999988765   67899999


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLE  328 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~  328 (361)
                      |..|....  .+.|.+++|.+|..    ..+.+.|..+++++.+.+
T Consensus       351 y~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  351 YSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99998876  78999999998875    348899999999999987

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.59  E-value=0.98  Score=44.06  Aligned_cols=76  Identities=22%  Similarity=0.150  Sum_probs=66.4

Q ss_pred             cCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          277 LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL---NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       277 l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ...+..|+.+|.+++...|.....|-++|.+++..   |+--.|+.++..|++++|....++..|+++...+...+++.
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            34567899999999999999999999999998875   47778999999999999999999999999988888777654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.59  E-value=6.5  Score=40.15  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=89.7

Q ss_pred             hhHHHHHhcchhH-HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHY-KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .|.....+|..++ ...+++.|..+.+|++.++..            ..+......+..-++.++.+.+... |+..+++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~------------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~  124 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER------------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDK  124 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence            5788899999998 688999999999999886532            1255556667777799998888777 9999999


Q ss_pred             HhhcCCC----chhhHhHHHHH--HHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 018098          290 AMRDGDD----NVKALFRQGQA--YMALNDVDAAVESFEKALKLE--PNDGGIKKELAVAKKKI  345 (361)
Q Consensus       290 al~~~p~----~~ka~~~~a~a--~~~l~~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~~~  345 (361)
                      +|+.-..    .+...+++-.+  +...+++..|++.++....+.  +.++.+.....-....+
T Consensus       125 ~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  125 AIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            9976554    34555555433  223379999999999998887  46776655554444443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=90.30  E-value=1.3  Score=30.95  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=31.3

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (361)
                      +.|..+...|..+=+.|+|++|+.+|.+|++++.....
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~   40 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK   40 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            45677778888888999999999999999998765433

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.27  E-value=8  Score=35.58  Aligned_cols=99  Identities=11%  Similarity=0.072  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC------Cc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH--hC
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD------DN--VKALFRQGQAYMALNDVDAAVESFEKALK--LE  328 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p------~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~--l~  328 (361)
                      ....-..+...||..|.+.++|..|.+... ++.++.      .+  ...+.++|.+|...++-.+|..+..++--  .+
T Consensus        98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen   98 FEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            455667788999999999999999855432 333332      01  34567889999999999999999998743  34


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018098          329 PNDGGIKKELAVAKKKIHERREQEKKQYRK  358 (361)
Q Consensus       329 P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  358 (361)
                      ..|+.....+..|..+.-+++++--...++
T Consensus       177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqr  206 (399)
T KOG1497|consen  177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQR  206 (399)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999888877755444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.14  E-value=1  Score=28.43  Aligned_cols=25  Identities=24%  Similarity=0.541  Sum_probs=20.0

Q ss_pred             hHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          302 FRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       302 ~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      +.+|.+|..+|+++.|...++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.79  E-value=0.66  Score=44.31  Aligned_cols=61  Identities=21%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHh--------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAM--------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al--------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      .+..|..++.-+|+|..|++..+-.=        +.-+..+..+|..|-||+++++|.+|++.|...+-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666778888999999998765432        22233578899999999999999999999988764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.72  E-value=1.3  Score=39.99  Aligned_cols=62  Identities=16%  Similarity=-0.064  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |+.+|.+|+.+.|.+-..|..+|.++...|+.=+|+-+|-+++-..-..+.+..++..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997764567788888777666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.65  E-value=7.4  Score=34.87  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=83.9

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCchhhHh
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVKALF  302 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~~p~~~ka~~  302 (361)
                      +..+-..|+..-..+|+                  ++|-+-++|.-+-.|...++ +..+-+++.++++.-+|.|...|.
T Consensus        55 ~~E~S~RAl~LT~d~i~------------------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH  116 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIR------------------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH  116 (318)
T ss_pred             ccccCHHHHHHHHHHHH------------------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence            34455678888888888                  78888888888888887774 677888899999999999999999


Q ss_pred             HHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          303 RQGQAYMALNDVD-AAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       303 ~~a~a~~~l~~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      .|-.+...+|++. .-+...++++..+..|=-++....=+.+..+..
T Consensus       117 HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~  163 (318)
T KOG0530|consen  117 HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY  163 (318)
T ss_pred             HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence            9988888889888 788888888888877766666655555544443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.23  E-value=1.9  Score=30.69  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      +.|..+...+..+=+.|+|.+|+.+|++|++++..+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            357778888889999999999999999999977644

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.12  E-value=6.8  Score=37.20  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=82.5

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCchhhH
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEFAMRDGDDNVKAL  301 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~Al~~~~~al~~~p~~~ka~  301 (361)
                      +..-+++-+.+-..+|.                  .+|..-.+|+.+..+..+..  ++..-++.|.++|+.||.|..+|
T Consensus        87 k~~~ld~eL~~~~~~L~------------------~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W  148 (421)
T KOG0529|consen   87 KQALLDEELKYVESALK------------------VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW  148 (421)
T ss_pred             HHHhhHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence            34466777788888888                  88999999999999998775  47899999999999999998887


Q ss_pred             hHHHHHHH-hcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          302 FRQGQAYM-ALND---VDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       302 ~~~a~a~~-~l~~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      ..|=.+.. ....   ..+-+++..+++.-++.|=.+|.....+...+
T Consensus       149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            65533333 3333   67888999999999999988888877776644

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.84  E-value=1.2  Score=26.72  Aligned_cols=32  Identities=13%  Similarity=-0.019  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHH--HHhhcCCCc
Q 018098          266 IFTNSSACKLKLGDLKGALLDTE--FAMRDGDDN  297 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~--~al~~~p~~  297 (361)
                      .+..+|.++...|+|++|+..++  -+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            46778999999999999999955  888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.84  E-value=4.1  Score=38.62  Aligned_cols=100  Identities=20%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHh-h
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK---LGDLKGALLDTEFAM-R  292 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---l~~~~~Al~~~~~al-~  292 (361)
                      ++=-.|-.-++|+.-++..+..-. +++.             .-+....+...+|.++.+   .|+.++|+..+..++ .
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~-~p~~-------------~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~  211 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEA-LPTC-------------DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES  211 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhc-cCcc-------------chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc
Confidence            333344555666666665554332 1111             022234455667777777   899999999999955 5


Q ss_pred             cCCCchhhHhHHHHHHHh---------cCCHHHHHHHHHHHHHhCCC
Q 018098          293 DGDDNVKALFRQGQAYMA---------LNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~---------l~~~~~A~~~~~~al~l~P~  330 (361)
                      ..+.++..+--.|.+|..         ....++|+..|.++.+++|+
T Consensus       212 ~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  212 DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            566778888888888864         23578999999999999986

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.80  E-value=8.7  Score=39.24  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=83.2

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc-ccCCCCccc-------hhHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW-EKEGIDEGK-------SSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      +-.+.-.|......+..++|.+++.++++.+.... ..+......       ...+......++...+.+.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            55666778888888988899999999999888765 111111111       1233444556677788888999999999


Q ss_pred             HHHHHHHhhcC---C------CchhhHhHHHHHHHhcCCHHHHHHHHH
Q 018098          284 LLDTEFAMRDG---D------DNVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       284 l~~~~~al~~~---p------~~~ka~~~~a~a~~~l~~~~~A~~~~~  322 (361)
                      ......+....   |      ..+..+|-.|..+...|+.+.|...|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            88888777542   2      247889999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.43  E-value=6.6  Score=38.92  Aligned_cols=119  Identities=19%  Similarity=0.020  Sum_probs=82.6

Q ss_pred             HhcchhH---HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--
Q 018098          217 VFGNEHY---KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM--  291 (361)
Q Consensus       217 ~~G~~~~---~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al--  291 (361)
                      ..|..+|   ....|++|-..|.-|+....      +..--......|..+..+.-+|.++...|+.+.|....+++|  
T Consensus       240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d------~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~  313 (665)
T KOG2422|consen  240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHD------PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYV  313 (665)
T ss_pred             cCceeEEEeecchHHHHHHHHHHHHHhhcC------CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            3444444   35567778777777766321      111111222457788889999999999999888777777776  


Q ss_pred             -------h------------cCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 018098          292 -------R------------DGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPN-DGGIKKELAVA  341 (361)
Q Consensus       292 -------~------------~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~~~l~~~  341 (361)
                             .            +.|.|   ..++|+.-+.+...|.+.-|.++++..+.++|. |+.....+...
T Consensus       314 ~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~  386 (665)
T KOG2422|consen  314 FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI  386 (665)
T ss_pred             HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence                   1            12233   567788888888999999999999999999998 87655554444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.20  E-value=5.2  Score=40.30  Aligned_cols=116  Identities=20%  Similarity=0.050  Sum_probs=83.1

Q ss_pred             hHHHHHhcchhHH-----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-----ChH
Q 018098          212 VDSIKVFGNEHYK-----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (361)
Q Consensus       212 a~~~~~~G~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (361)
                      +.+...+|..++.     .++.+.|+.+|+.+.+-....             .......+.+.+|.||.+-.     ++.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-------------a~~~~~~a~~~lg~~Y~~g~~~~~~d~~  310 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-------------ATKGLPPAQYGLGRLYLQGLGVEKIDYE  310 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-------------HhhcCCccccHHHHHHhcCCCCccccHH
Confidence            4455556665553     478999999999997610000             11113446788999998843     688


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALN---DVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      .|+.++.++-.++  ++.+.+++|.++..-.   ++..|..+|..|.+.-  +..+...++.+...
T Consensus       311 ~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  311 KALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence            8999999999887  6788999999988765   6789999999998763  55566666665443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=88.12  E-value=3.3  Score=44.74  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+....+.|......+.|.+|.+ ..+++.++...          ...+.+....+|..+|..+.+++++++|+..+.+|
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v----------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka  999 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV----------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA  999 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh----------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence            56677788888888888888888 55555533211          11367888999999999999999999999999999


Q ss_pred             hhcC--------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      .-+.        |+...+|-+++...+..++...|+..+.+++++
T Consensus      1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            8442        445788999999999999999999999998886

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=87.93  E-value=4.1  Score=40.40  Aligned_cols=69  Identities=19%  Similarity=0.090  Sum_probs=60.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKEL  338 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~-al~l~P~~~~~~~~l  338 (361)
                      ++..+..++....+......++..+|.+++++.++|.+....|..-.++..+.. +....|.|..+...+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            788888899999999999999999999999999999999888877777766655 899999998887777

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.88  E-value=2.8  Score=37.48  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      ....+...+|.-|+++|+|++|+..++.+.......      ...+..+..|+..+|+.++.+...-+
T Consensus       176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            444556677777777777777777777777553221      45566666777777777766665433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=87.87  E-value=19  Score=36.45  Aligned_cols=115  Identities=14%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..|.-.+...-.-|=++.-...|.+.++                  +.--.+.+..|.|..+..-.-++++-+.|++.+.
T Consensus       478 kiWs~y~DleEs~gtfestk~vYdriid------------------LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~  539 (835)
T KOG2047|consen  478 KIWSMYADLEESLGTFESTKAVYDRIID------------------LRIATPQIIINYAMFLEEHKYFEESFKAYERGIS  539 (835)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence            3343344444455677777888999888                  5556677788999988888889999999999998


Q ss_pred             cCCC-c----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 018098          293 DGDD-N----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKI  345 (361)
Q Consensus       293 ~~p~-~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~  345 (361)
                      +-|. +    +-.|.......+.--..+.|...|++|++..|.  -+.+....+.+.++.
T Consensus       540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            8642 1    345556677777777999999999999999984  234444555554444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.69  E-value=1.2  Score=39.95  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=64.0

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ..+.=..+...++++.|..+-++.+.                  ++|.+..-+.-+|.+|.++|-+..|+++++..++..
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~------------------l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~  245 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLD------------------LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC  245 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHh------------------hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence            34445567789999999999999998                  788888888999999999999999999999999999


Q ss_pred             CCchhhHhHHHHH
Q 018098          295 DDNVKALFRQGQA  307 (361)
Q Consensus       295 p~~~ka~~~~a~a  307 (361)
                      |+.+.+-.-+++.
T Consensus       246 P~~~~a~~ir~~l  258 (269)
T COG2912         246 PDDPIAEMIRAQL  258 (269)
T ss_pred             CCchHHHHHHHHH
Confidence            9988776665543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.68  E-value=5.8  Score=35.48  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       272 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      +++.+-..-..|++....+|.++|-+..+|..|-.++..+ .+..+-+.++...++-+|.|=.++.....+-+.+....-
T Consensus        51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~  130 (318)
T KOG0530|consen   51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF  130 (318)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence            4455667788999999999999999988887777766665 488999999999999999999999888888877775554


Q ss_pred             HHHHHHhhhc
Q 018098          351 QEKKQYRKMF  360 (361)
Q Consensus       351 ~~k~~~~~~f  360 (361)
                      .+-.+.++|+
T Consensus       131 rELef~~~~l  140 (318)
T KOG0530|consen  131 RELEFTKLML  140 (318)
T ss_pred             chHHHHHHHH
Confidence            5566666655

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.38  E-value=2.6  Score=34.10  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      ...+|...+..|+|.-|+..++.++..+|+|..++..++.+...+.
T Consensus        73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555555555555555444444443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.35  E-value=5.6  Score=34.63  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=54.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      -.++-+...+||.....-++-.|.+.-...-+-+.+.-.|+|++|+.-++-+-+++|++..
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            3456788999999999999999999988888889999999999999999999999998653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.07  E-value=4.9  Score=36.55  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      -+.-.+..+++.+|...+..++..+|.+..+...++.+|...|+.+.|...+..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344456789999999999999999999999999999999999999988876654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.02  E-value=17  Score=34.52  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=75.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCC------CCc-----cchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEG------IDE-----GKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..+...+.++..+|++..|.+..++||-.++......-      ...     .-....+.....++........+.|-+
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~  119 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW  119 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence            566777788888888888888888888776653322110      000     000112333445566667788889999


Q ss_pred             HHHHHHHHHHhhcCCC-ch-hhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          281 KGALLDTEFAMRDGDD-NV-KALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~-~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      .-|+++|.-.+.+||. ++ -+++.+=......++|+--+..++....
T Consensus       120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            9999999999999999 43 3445555555666788767776666544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.95  E-value=31  Score=36.18  Aligned_cols=108  Identities=13%  Similarity=0.027  Sum_probs=80.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +.-....+..+....+|.+|.....++..-++.-    .     .............-+|.+....+++++|+..+..++
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~----~-----~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al  485 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAP----M-----HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL  485 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcC----c-----ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            4444455667777888998888887776633321    0     001223344555667888888999999999999999


Q ss_pred             hcCCCc-----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          292 RDGDDN-----VKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       292 ~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      ..=|.+     .-++...|.+..-.|++++|..+...+.++.
T Consensus       486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence            877665     5678888999999999999999999998874

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.88  E-value=19  Score=34.15  Aligned_cols=85  Identities=14%  Similarity=-0.008  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCCchhhHhHHHHHHHh---cCCHHHHHHHHHH-HHHhCCCCHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDDNVKALFRQGQAYMA---LNDVDAAVESFEK-ALKLEPNDGG  333 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~-al~l~P~~~~  333 (361)
                      .......|+-.+|....+|+.-++..+..-.+    -++.....+..|.|+..   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34456678888999999999999988887776    44566777788888888   9999999999999 4555667899


Q ss_pred             HHHHHHHHHHHHH
Q 018098          334 IKKELAVAKKKIH  346 (361)
Q Consensus       334 ~~~~l~~~~~~~~  346 (361)
                      +.-.++.+.+.+-
T Consensus       219 ~~gL~GRIyKD~~  231 (374)
T PF13281_consen  219 TLGLLGRIYKDLF  231 (374)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987764

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.77  E-value=1.6  Score=31.26  Aligned_cols=36  Identities=17%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      .|..+...|..+=+.|+|++|+.+|.++|+++....
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l   40 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL   40 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            466777888888999999999999999999876543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=86.62  E-value=12  Score=28.89  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=60.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCch---hhHhHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~---ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      +|.-++..|++-+|++..+..+...+++.   -.+...|.++..+..           .-.|+++|.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999888775   345555777765432           2478999999999999886666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018098          336 KELAVAKKKIHERREQE  352 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~  352 (361)
                      ..++.-.....-+++.-
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            66655544444454433

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.59  E-value=6.9  Score=27.87  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=9.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 018098          303 RQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       303 ~~a~a~~~l~~~~~A~~~~~~al  325 (361)
                      .+|.-+-..|++++|+.+|++++
T Consensus        11 ~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682          11 INAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Confidence            33334444444444444444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.51  E-value=7.4  Score=31.73  Aligned_cols=83  Identities=13%  Similarity=-0.072  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ...+.....+-+...+.+++....+..=-+.|+.+..-.--|..+...|+|.+|+..|....+-.+..+-....++-|..
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            33444455555557777777777666667778887777777888888888888888887777666666666666666655


Q ss_pred             HHH
Q 018098          344 KIH  346 (361)
Q Consensus       344 ~~~  346 (361)
                      .++
T Consensus        90 al~   92 (153)
T TIGR02561        90 AKG   92 (153)
T ss_pred             hcC
Confidence            443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.39  E-value=2.6  Score=40.45  Aligned_cols=60  Identities=8%  Similarity=0.050  Sum_probs=50.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ...+.+.|..+|.+|+|.++.-+-.-..+                  ..| .+.+|.-+|.|.+..++|++|..++...
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~------------------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTK------------------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            44566778889999999999988777777                  667 7789999999999999999998887654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=85.73  E-value=1.4  Score=39.33  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             CChHHHHHHHHHHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          278 GDLKGALLDTEFAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       278 ~~~~~Al~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      -....|.+.++.||-+....      --+.++++.+|+.+.+|+.|..+|.+|+.+--+ ...-....++...+....++
T Consensus        53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~-d~L~~We~rLet~L~~~~kk  131 (368)
T COG5091          53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD-DTLPLWEDRLETKLNKKNKK  131 (368)
T ss_pred             cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHhHhhHh
Confidence            44678899999999664332      346789999999999999999999999998533 23333344444444444444


Q ss_pred             HH
Q 018098          352 EK  353 (361)
Q Consensus       352 ~k  353 (361)
                      ++
T Consensus       132 Q~  133 (368)
T COG5091         132 QK  133 (368)
T ss_pred             hc
Confidence            43

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=85.31  E-value=12  Score=33.88  Aligned_cols=96  Identities=25%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCc-hh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDN-VK  299 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~~~al~~~p~~-~k  299 (361)
                      .++..+|+..|..+.+                    .....+.+++|.+|..    ..++.+|..++.+|.+..-.. ..
T Consensus        90 ~~~~~~A~~~~~~~a~--------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~  149 (292)
T COG0790          90 SRDKTKAADWYRCAAA--------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL  149 (292)
T ss_pred             cccHHHHHHHHHHHhh--------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence            4567888888886543                    3455677889999887    458999999999999886333 34


Q ss_pred             hHhHHHHHHHhc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMAL----N---DVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       300 a~~~~a~a~~~l----~---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +.+++|.+|..-    +   +...|+..|.++....  +......++.+.
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y  197 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY  197 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            488888888764    1   3337888898888776  566666666554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.23  E-value=1.1  Score=24.47  Aligned_cols=24  Identities=17%  Similarity=-0.054  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+..++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.23  E-value=6.1  Score=42.80  Aligned_cols=128  Identities=14%  Similarity=0.129  Sum_probs=94.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..++..+.+.+++++|+..=.+|.-+....          .....+.....|.|++...+..++...|+..+.++
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~----------~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV----------LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh----------ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence            46677888899999999999999877776532211          11135677788999999999999999999999888


Q ss_pred             hhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHH
Q 018098          291 MRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--------DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       291 l~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--------~~~~~~~l~~~~~~~~~~  348 (361)
                      +.+        .|.-.-...+++..+..+++++.|+.+++.|+.++-.        +......++++...+++-
T Consensus      1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~df 1115 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDF 1115 (1236)
T ss_pred             HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHH
Confidence            844        4555566678888899999999999999999986532        233444455555544443

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.14  E-value=7.5  Score=34.68  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~  349 (361)
                      .....+|.-|+.+|+|++|++.|+.+...--.      ...+...+.+|...+++.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~  235 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE  235 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence            45567899999999999999999998655322      2345556666655555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.09  E-value=4.9  Score=28.86  Aligned_cols=57  Identities=16%  Similarity=-0.002  Sum_probs=43.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCchh---hHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          271 SACKLKLGDLKGALLDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       271 a~~~~~l~~~~~Al~~~~~al~~~p~~~k---a~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      |.-+....+.++|+....++|+..++...   ++=.+.+||...|+|++++++--+-+++
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445788899999999999998877654   4444667899999999999877665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.01  E-value=2.3  Score=30.33  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      ..|..+...|...=..|+|++|+.+|..+|+++...
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~   39 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            456777888888889999999999999999987654

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=84.60  E-value=2.4  Score=38.15  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHh
Q 018098          231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA  310 (361)
Q Consensus       231 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~  310 (361)
                      |..+|.+|+.                  +.|.....|+.+|..+...++.-.|+-+|-+++...--.+.|.-++...+..
T Consensus         1 A~~~Y~~A~~------------------l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIR------------------LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH------------------H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH------------------hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999                  8888999999999999999999999999999997665567788888777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.34  E-value=14  Score=35.14  Aligned_cols=90  Identities=13%  Similarity=0.029  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHh------------cCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC--CHHHHHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLK------------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKA  324 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~------------l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~a  324 (361)
                      -+|....+|+-+-.++..            ....++-+.+...+|+.+|+..-+|+.|..++....  ++..-++.++++
T Consensus        58 ~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~  137 (421)
T KOG0529|consen   58 KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKA  137 (421)
T ss_pred             hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            445555555554444332            234677788889999999999999999999998776  478889999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          325 LKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       325 l~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++.||.|-..+....-+-...+..
T Consensus       138 L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  138 LKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HhcCcccccchHHHHHHHHHHhcc
Confidence            999999877776666665555444

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.26  E-value=2.6  Score=29.97  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=31.3

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      +..|..+...|...-..|+|++|+.+|.+|++++...
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   39 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3457778888888899999999999999999977654

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=84.23  E-value=21  Score=33.90  Aligned_cols=119  Identities=12%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             HHHhhhHHHHHhcchhHHhh---------hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 018098          207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l  277 (361)
                      -..+.+..++++|-.+.+.+         ..+.|..+|+.|.-...++...-..... ...+++....++..+..+..+.
T Consensus       109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~-~~Dl~~~~l~~L~~lmLAQAQE  187 (361)
T cd09239         109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYG-AVDMSSQLLSFNYSLMLAQAQE  187 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCC-cccCCHHHHHHHHHHHHHHHHH
Confidence            55667888888888876544         3788889999888776655443111111 0135566666666655544332


Q ss_pred             CChHH-----------------HHHHHHHHhhc------C---------CCc------------hhhHhHHHHHHHhcCC
Q 018098          278 GDLKG-----------------ALLDTEFAMRD------G---------DDN------------VKALFRQGQAYMALND  313 (361)
Q Consensus       278 ~~~~~-----------------Al~~~~~al~~------~---------p~~------------~ka~~~~a~a~~~l~~  313 (361)
                      ==|.+                 +...|+.|+..      +         ..+            +-++|+.|......++
T Consensus       188 c~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k  267 (361)
T cd09239         188 CLLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQK  267 (361)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            22222                 33445544432      1         111            3356777777777778


Q ss_pred             HHHHHHHHHHHHH
Q 018098          314 VDAAVESFEKALK  326 (361)
Q Consensus       314 ~~~A~~~~~~al~  326 (361)
                      +-++++.|+.|..
T Consensus       268 ~Ge~Ia~L~~A~~  280 (361)
T cd09239         268 MGERVAYYQLAND  280 (361)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887766

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.01  E-value=2.8  Score=23.53  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          312 NDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       312 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      |+.+.|...|++++...|.+..++......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456777888888888888887777776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=83.98  E-value=5.6  Score=28.24  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK  248 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~  248 (361)
                      ..|..+...|..+=+.|+|++|+.+|.+|++++......
T Consensus         6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~   44 (77)
T smart00745        6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV   44 (77)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence            456677778888888999999999999999988765433

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.49  E-value=3.4  Score=29.29  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      +.|..+...|...=+.|+|++|+.+|..|++++....
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~   40 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            3566677778888888999999999999999876543

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.47  E-value=1.8  Score=30.90  Aligned_cols=34  Identities=12%  Similarity=0.049  Sum_probs=29.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      .+..+...|...=..|+|++|+.+|..|++++..
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            4666777788888999999999999999997754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.28  E-value=4.2  Score=39.65  Aligned_cols=27  Identities=15%  Similarity=0.042  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ..|..||...+..|+++-|..+++++=
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            367777777777777777777776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.69  E-value=8.8  Score=27.33  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK  248 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~  248 (361)
                      ..|..+...|...-+.|+|++|+.+|..+++++......
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~   42 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQG   42 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence            356677777888888999999999999999987654333

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.65  E-value=3.3  Score=33.49  Aligned_cols=52  Identities=17%  Similarity=0.063  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~  316 (361)
                      .....+|...+..|+|.-|+..++.++..+|++..+...++.++.+++.-.+
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            3456777888899999999999999999999999999999999998876543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.60  E-value=44  Score=32.80  Aligned_cols=103  Identities=18%  Similarity=0.082  Sum_probs=75.5

Q ss_pred             HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC---
Q 018098          223 YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD---GDD---  296 (361)
Q Consensus       223 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~---~p~---  296 (361)
                      .-.|-|++|.++=+++|.....+...+.    ....+.-.....+-++..|.+-.|++.+|++....+...   -|.   
T Consensus       286 m~~gy~~~~~K~tDe~i~q~eklkq~d~----~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L  361 (629)
T KOG2300|consen  286 MPAGYFKKAQKYTDEAIKQTEKLKQADL----MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL  361 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccc----hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH
Confidence            3567888888888888875443322221    112355667788899999999999999998866666543   232   


Q ss_pred             ----chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          297 ----NVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       297 ----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                          .+..++-+|.-....+.|+.|...|..|.++-.
T Consensus       362 lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~  398 (629)
T KOG2300|consen  362 LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE  398 (629)
T ss_pred             HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence                366778888888889999999999999998864

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=82.59  E-value=11  Score=30.56  Aligned_cols=107  Identities=17%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             eEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCc--EEEeCCCCCCCCCCCCccCCCCCCCCc
Q 018098           18 GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGF--MIQGGDISAGDGTGGESIYGLKFEDEN   95 (361)
Q Consensus        18 G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~   95 (361)
                      -.++.+|..|.||.||+.|++.-              =|++..+|-...|-  ++.-|++.. .+          .+-||
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~~-~~----------~~~EN   62 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFDP-FE----------PGREN   62 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--SS-S-------------S-S
T ss_pred             eEEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcCc-CC----------CCCCc
Confidence            46899999999999999999985              28999999988885  444465431 11          12344


Q ss_pred             cccCCCCceEEEee---cCCCC--CC-CcceEEecCCC--------CCCCCCceEEeEEEeChHHHHHHhc
Q 018098           96 FELKHERKGMLSMA---NAGPN--TN-GSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        96 ~~~~~~~~g~l~~~---~~~~~--~~-~sqF~I~~~~~--------~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      .. .+-.+|-|.+.   ....+  .. =+..-|..+..        .++.  -.+|++|.+|++-+.++-+
T Consensus        63 ~T-~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   63 HT-VTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR  130 (147)
T ss_dssp             EE-SS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred             Cc-ccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence            32 23346766555   11111  11 13344443322        2222  3689999999987666543

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.52  E-value=7.8  Score=31.57  Aligned_cols=82  Identities=13%  Similarity=-0.061  Sum_probs=60.7

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p  295 (361)
                      .+.........+.+++..... +++.                 +.|....+-.--+..++..|+|.+|+..+..+.+-.+
T Consensus        14 i~~~~~aL~~~d~~D~e~lLd-ALrv-----------------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLD-ALRV-----------------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHH-HHHH-----------------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            333334444666777665544 3442                 5666777777778889999999999999999999988


Q ss_pred             CchhhHhHHHHHHHhcCCHH
Q 018098          296 DNVKALFRQGQAYMALNDVD  315 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~l~~~~  315 (361)
                      ..+-+.--++.|+..+|+.+
T Consensus        76 ~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CchHHHHHHHHHHHhcCChH
Confidence            88777777888899888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=82.50  E-value=5.7  Score=40.30  Aligned_cols=26  Identities=15%  Similarity=0.335  Sum_probs=15.0

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHH
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKA  238 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~a  238 (361)
                      .+++++|..+.....|.+|.++|.++
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555555666666666666666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.43  E-value=3.2  Score=42.75  Aligned_cols=33  Identities=21%  Similarity=0.488  Sum_probs=29.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD  243 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~  243 (361)
                      .++.++..|+.+|++|+|++|...|-+++..++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            467788899999999999999999999998665

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=82.39  E-value=3.7  Score=37.22  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      .+.+...+..|...|.+.+|++..++++.++|-+...++.+..+...+++.
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~  329 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE  329 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence            456677789999999999999999999999999999999999888887763

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=81.81  E-value=1.1  Score=40.88  Aligned_cols=80  Identities=10%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHH-HHHHHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN-SSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~~l~~~~~Al~~~~~a  290 (361)
                      ...|....+...+.|-|.+-...|.+++.                  .+|+++.+|.. -+.-+...++++.|...+.++
T Consensus       107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~------------------khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g  168 (435)
T COG5191         107 PKIWSQYAAYVIKKKMYGEMKNIFAECLT------------------KHPLNVDLWIYCCAFELFEIANIESSRAMFLKG  168 (435)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------cCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence            44566666667778889999999999998                  88999988876 333455678999999999999


Q ss_pred             hhcCCCchhhH---hHHHHHHH
Q 018098          291 MRDGDDNVKAL---FRQGQAYM  309 (361)
Q Consensus       291 l~~~p~~~ka~---~~~a~a~~  309 (361)
                      |+++|++++.|   +++-..|.
T Consensus       169 lR~N~~~p~iw~eyfr~El~yi  190 (435)
T COG5191         169 LRMNSRSPRIWIEYFRMELMYI  190 (435)
T ss_pred             hccCCCCchHHHHHHHHHHHHH
Confidence            99999997755   44444443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=81.49  E-value=19  Score=34.32  Aligned_cols=70  Identities=16%  Similarity=0.095  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMR----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      +.+.+-+-.+|+.-+.|+.|-..-.++--    .+..++..+|.+|.+..-+.+|..|.++|-.|+...|++..
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a  282 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA  282 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence            34455566788888889998777666652    22245788899999999999999999999999999998544

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.10  E-value=9.4  Score=27.49  Aligned_cols=37  Identities=24%  Similarity=0.106  Sum_probs=31.4

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      .+.|-.+.+.|..+=..|+.++|+.+|+++++.+...
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg   41 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG   41 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888899999999999999988654

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

Probab=81.06  E-value=25  Score=33.08  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=69.3

Q ss_pred             HHHhhhHHHHHhcchhHHhh---------hHHHHHHHHHHHHhhhccccccC--CCCccchhHHHHHHHHHHHHHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQ---------DYKMALRKYRKALRYLDICWEKE--GIDEGKSSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g---------~y~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~  275 (361)
                      -..+.+..+++.|-.+.+.+         .++.|..+|++|.-+..++.+.-  .........+++....++..+..+..
T Consensus       114 l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQA  193 (346)
T cd09240         114 LGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQQEPTPDLSPDTLSALSALMLAQA  193 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence            34456777777777665433         26889999999888776654421  00111112355556666666555443


Q ss_pred             hcCChH-----------------HHHHHHHHHhhc----------CCCc------------hhhHhHHHHHHHhcCCHHH
Q 018098          276 KLGDLK-----------------GALLDTEFAMRD----------GDDN------------VKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       276 ~l~~~~-----------------~Al~~~~~al~~----------~p~~------------~ka~~~~a~a~~~l~~~~~  316 (361)
                      +.==|.                 ++...|+.|+..          ...+            +.++|+.|..+...+++-+
T Consensus       194 QE~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~Ge  273 (346)
T cd09240         194 QEVFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGE  273 (346)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence            322222                 223344444421          1111            3467778888888889999


Q ss_pred             HHHHHHHHHHh
Q 018098          317 AVESFEKALKL  327 (361)
Q Consensus       317 A~~~~~~al~l  327 (361)
                      |+..|+.|.++
T Consensus       274 aIa~L~~A~~~  284 (346)
T cd09240         274 EIARLQHALEL  284 (346)
T ss_pred             HHHHHHHHHHH
Confidence            99988888763

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.22  E-value=20  Score=37.57  Aligned_cols=125  Identities=12%  Similarity=0.118  Sum_probs=74.6

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-------CChH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-------GDLK  281 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-------~~~~  281 (361)
                      +.......+.|..+...|+|.+|+++|+..|-.+.-+.-+...+.   ...+.....+...+...-+++       ...+
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~---aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~ 1064 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEE---AEADELIKICREYIVGLSVELERRKLKKPNLE 1064 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhH---HHHHHHHHHHHHHHhhheeeeeecccCCchHH
Confidence            334556678899999999999999999999875554333322222   223333333322222222221       2233


Q ss_pred             HH--HHHHHHHhhcCCCchhhHhHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098          282 GA--LLDTEFAMRDGDDNVKALFRQG-QAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       282 ~A--l~~~~~al~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                      .+  +.+|=.-..+.|-..-.-.+.| .+++.++++..|.....+.+++.|..+.+..
T Consensus      1065 ~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1065 QQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred             HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence            33  2233333456665433334444 4688999999999999999999997765443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.17  E-value=3.6  Score=25.94  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          268 TNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      +++|.+|+++|+++.|....++++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            68999999999999999999999954

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-83
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-50
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		4e-50
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		5e-50
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		3e-49
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		8e-47
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-46
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-43
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-43
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-43
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-43
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		8e-43
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		8e-43
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		1e-42
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-42
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		4e-42
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		6e-42
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		6e-42
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-42
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		7e-42
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		7e-42
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		8e-42
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		8e-42
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-41
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-41
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-41
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-41
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-41
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		3e-41
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-41
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-41
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-41
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-41
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-41
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		6e-41
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		7e-41
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-40
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		1e-40
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-40
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-40
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		9e-40
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-39
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-39
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-39
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-38
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-38
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		7e-38
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-37
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-36
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		4e-36
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		5e-36
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-35
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		5e-34
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		2e-32
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		9e-27
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		9e-27
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-26
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		1e-24
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		2e-24
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		2e-23
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		4e-23
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-21
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-20
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		8e-20
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		1e-18
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		3e-16
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		7e-15
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-13
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-11
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		6e-09
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-08
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-08
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-08
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		8e-08
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		5e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-06
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		3e-06
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		7e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		8e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		8e-06
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		1e-05
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		3e-05
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		8e-05
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		9e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/359 (44%), Positives = 216/359 (60%), Gaps = 3/359 (0%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   F
Sbjct: 14  SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+IK FMIQ            ESIYG KFEDENF  KH+++G+LSMANAG NTNGSQFF
Sbjct: 74  HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFF 133
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI 181
           ITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D GI
Sbjct: 134 ITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWGI 192
Query: 182 SNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRY 241
                 GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 242 LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKAL 301
           ++    +   ++   + L+        N  AC                A+     N KAL
Sbjct: 253 VE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 302 FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           +R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 2/173 (1%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+K  +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQ            ESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQL 171

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  194 bits (494), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 117/173 (67%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXL 66
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 24  VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 83
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+Q            ESIYG  FEDE+F +KH    +LSMAN G +TNGSQF
Sbjct: 84  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  184 bits (466), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 113/171 (66%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYK   FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQ            ESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/176 (54%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P+ F DISI  +  GRI++E+Y D +PKTAENFRALCTGEKG G  +G PLHYK   
Sbjct: 5   MTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKG-RSGKPLHYKSSV 63
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELK---HERKGMLSMANAGPNTNG 117
           FHRVI  FMIQ            ESIYG  F DE+F  K   H   G LSMANAGPNTNG
Sbjct: 64  FHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNG 123
Query: 118 SQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           SQFFI T  T  LDGKHVVFGRVI G+ VV+ +E + +       + + ++DCGE+
Sbjct: 124 SQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTR-SRIVVSDCGEV 178

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  173 bits (438), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 109/172 (63%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YK   F
Sbjct: 18  GSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRV+K FMIQ            ESIYG  F+DENF LKH+R  +LSMAN G +TNGSQFF
Sbjct: 78  HRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG +
Sbjct: 138 ITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 112/169 (66%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ IG E  GR+++ ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 14  KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKDSKFHRV 65
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 66  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DVTI DCG+I
Sbjct: 126 VKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKI 174

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 112/170 (65%), Gaps = 3/170 (1%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YK   FHR
Sbjct: 11  PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF---RKDGVPIGYKGSTFHR 67
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQ             SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 127
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 128 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 108/170 (63%), Gaps = 2/170 (1%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y    F
Sbjct: 18  GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMG-QSGKPLCYTGSFF 76
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FMIQ            ESIYG KF DENF   H+   +LSMANAGPNTNGSQFF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFF 136
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           ITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 137 ITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 17  KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 69  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 129 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHRV
Sbjct: 7   KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ            +SIYG +F DENF+LKH   G +SMANAG +TNGSQFFITT
Sbjct: 59  IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 118
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I
Sbjct: 119 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 167

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YK   
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGEL 170

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 11/171 (6%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    FHR
Sbjct: 11  PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCCFHR 62
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q            +SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQFFI 
Sbjct: 63  VIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFIC 122
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD-VTITDCGEI 173
           TT+   LDGKHVVFGRV+ G  VV+ +E V  G     + + V I+ CGE+
Sbjct: 123 TTKCDWLDGKHVVFGRVVDGQNVVKKMESV--GSKSGKVKEPVIISRCGEL 171

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  167 bits (424), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  167 bits (424), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 9   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 60
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 61  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 172

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  167 bits (424), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YK   F
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 114 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 164

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YK   F
Sbjct: 3   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 54
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 55  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 114
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 115 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 165

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 107/172 (62%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
             P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YK   F
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGSTF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM Q            +SIYG +F DENF LKH   G+LSMANAGPNTNGSQFF
Sbjct: 53  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           I T +T  LDGKHVVFG VI+GM VV+ IE   +         + ITDCG++
Sbjct: 113 ICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTS-KKIVITDCGQL 163

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+L+MANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FH++I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 109/171 (63%), Gaps = 5/171 (2%)
Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK IG + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IG-SRGKNLHYKNSIFH 60
Query: 63  RVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM Q            ESIYG  F DENF +KH++ G+LSMANAGPNTN SQF I
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLI 120
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCGE 172
           T      LDGKHVVFG+VI+GM VVR +E    G     +   V ITDCGE
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEK--EGAKSGYVKRSVVITDCGE 169

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 105/165 (63%), Gaps = 9/165 (5%)
Query: 7   FLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIK 66
           F DI+      G I  ++++DV+PKTA NFRALCTGEKG G        Y    FHRVI 
Sbjct: 5   FFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG--------YAGSHFHRVIP 56
Query: 67  GFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTR 126
            FM+Q            +SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFITT  
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVV 116
Query: 127 TSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           TS LDGKHVVFG VI GM VV++IE   +G    P + + I  CG
Sbjct: 117 TSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGK-PRSRIEIAKCG 160

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 1   MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 52
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 112
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 113 FICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 4   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 115
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 116 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YK   FHRV
Sbjct: 9   KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHRV 60
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 61  IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I
Sbjct: 121 TKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG V +GM +V ++E   +  N      +TI DCG++
Sbjct: 115 TAKTKWLDGKHVVFGAVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 163

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 108/170 (63%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +GM +V +++   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS-RNGKTSKKITIADCGQL 163

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 109/169 (64%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + F D+ IG +  GRI++ ++  V+PKT ENF AL TGEKG G        YK  +FHRV
Sbjct: 17  KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG--------YKGSKFHRV 68
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           IK FMIQ             SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT 
Sbjct: 69  IKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 128
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T+ + LDGKHVVFG+VI GM VV SIE   T  +D P+ + +I + G+I
Sbjct: 129 TKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 107/170 (62%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 8   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 59
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GFM Q            +SIYG KFEDENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFIC 119
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDG HVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 120 TAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 168

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 163

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  160 bits (406), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 9/168 (5%)
Query: 6   CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVI 65
            F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   FHRVI
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIFHRVI 57
Query: 66  KGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTT 125
             FM+Q            +SIYG KF DENF++KH + G+LSMANAG NTNGSQFFITT 
Sbjct: 58  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            TS LDGKHVVFG VI+G+ +VR +E   +       A + ITDCG +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTN-ATIKITDCGTV 164

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +K   F
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 61
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +K   F
Sbjct: 2   SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSSF 53
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  FM Q            +SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF
Sbjct: 54  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 113
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 114 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 163

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YK   FHRV
Sbjct: 7   KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHRV 58
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+TT
Sbjct: 59  IRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFVTT 117
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 118 APTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/170 (50%), Positives = 104/170 (61%), Gaps = 9/170 (5%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   FHR
Sbjct: 3   PTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHR 54
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I GF  Q            +SIYG KFEDENF LKH   G+LS ANAGPNTNGSQFFI 
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFIC 114
Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG+V +G  +V + E   +  N      +TI DCG++
Sbjct: 115 TAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS-RNGKTSKKITIADCGQL 163

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+    +  GR++ ++YND++PKTAENFRALCTGEKG G        Y    FHRV
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG--------YAGSPFHRV 54
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FM+Q            +SIYG KF DENF+  H+R G+LSMANAGPNTNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
                LDGKHVVFG V+ G  +V+ +E + +  +    A + +   GE+
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGS-PSGATKARIVVAKSGEL 162

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  154 bits (389), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 6/175 (3%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   F
Sbjct: 58  SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTIF 114
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVIK FMIQ             SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFF
Sbjct: 115 HRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFF 174
Query: 122 ITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHV-MTGDNDCPIADVTITDCGEI 173
           ITT +   LDGK+VVFGR+I    + +++ IE+V +T     P   + + +CGE+
Sbjct: 175 ITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 103/171 (60%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           + P+ + DI IG +  GRI   + +DV+P TAENFR LCT EKG G        +K   F
Sbjct: 11  SNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG--------FKGSSF 62
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I  F  Q            +SIYG KF+DENF LKH   G+LS AN+GPNTNGSQFF
Sbjct: 63  HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
           +T  +T  LDGKHVVFG V +G+ V+R IE   + D   P   V I DCGE
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK-PKQKVIIADCGE 172

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FHRV
Sbjct: 13  KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFHRV 64
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I+ FMIQ            +SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
             T  LDG HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 124 APTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F D+    E  GRI +E++++++P+TAENFRALCTGEKG G        +K   
Sbjct: 4   MTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG--------FKNSI 55
Query: 61  FHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  F+ Q            +SIYG KFEDENF++KH   G+LSMAN G NTN SQF
Sbjct: 56  FHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQF 115
Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            IT  +  HLD KHVVFG V  GM  V+ IE   +         +TIT+CG+I
Sbjct: 116 VITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSV-CRRITITECGQI 167

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 5   RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRV 64
           R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y   +FHRV
Sbjct: 8   RVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHRV 59
Query: 65  IKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT 124
           I  FMIQ             SIYG KF DENF+LKH   G LSMANAG +TNGSQFFITT
Sbjct: 60  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 119
Query: 125 TRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I
Sbjct: 120 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 99/171 (57%), Gaps = 9/171 (5%)
Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YK   F
Sbjct: 26  ASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGSTF 77
Query: 62  HRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HR+I GFM+Q             SIYG KF DENFELKH ++G+LSMAN G +TNGSQFF
Sbjct: 78  HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA-DVTITDCG 171
           IT  +T  LD KHVVFG V++GM VV  I    +          + I DCG
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 96/161 (59%), Gaps = 15/161 (9%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           GRI+  +++  +PKTA+NFR LC    G G        Y+   FHR+I  FMIQ      
Sbjct: 22  GRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------YRESTFHRIIPNFMIQGGDFTR 73
Query: 78  XXXXXXESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVF 137
                  SIYG KF DENF  KH++KG+LSMANAGPNTNGSQFFITT  TS LDGKHVVF
Sbjct: 74  GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVF 133
Query: 138 GRVI--KGMGVVRSIEHVMTGDNDCPIADVT---ITDCGEI 173
           G V   K   VV+ IE +  G +   +   T   I +CGE+
Sbjct: 134 GEVADEKSYSVVKEIEAL--GSSSGSVRSNTRPKIVNCGEL 172

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y   +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y   +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 18/165 (10%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  +L+ S+G+     I++E+Y    PKT +NF  L    +G         +Y   +FHR
Sbjct: 12  PNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHR 55
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQ             SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPTGTGRGG-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y    FHR IKGFM+Q      
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 87/157 (55%), Gaps = 19/157 (12%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G I +E++ +  PKT ENF ALC              +Y    FHR IKGFM+Q      
Sbjct: 16  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                  SI+G KFEDE  E LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 137 FGRVIKGMGVVRSIEHVMTGD------NDCPIADVTI 167
           FG+VI G+  +  +E +   +      ND  I D+TI
Sbjct: 124 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 160

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 84/159 (52%), Gaps = 14/159 (8%)
Query: 10  ISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFM 69
           I+I   L G   VE+Y    PKT  NF  LC  E G   NT          FHRVI  F+
Sbjct: 41  ITIYTNL-GDFEVELYWYHSPKTCLNFYTLC--EMGFYDNT---------IFHRVIPNFV 88
Query: 70  IQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTS 128
           IQ            +SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     
Sbjct: 89  IQGGDPTGTGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLP 147
Query: 129 HLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           HLDGKH +F RV K M  + +I  V T   + PI D+ I
Sbjct: 148 HLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 186

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P+   D +I     G I  +++    PKT ENF   C   +          +Y    FHR
Sbjct: 17  PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN--------GYYNGHTFHR 65
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IKGFMIQ            ESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFFI
Sbjct: 66  IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHV-MTGDNDCPIADVTITD 169
           T   T  LD KH VFGRV KGM VV+ I +V +    D P  DV+I +
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G I + ++     KT +NF               +  +Y    FHRVIK FM+Q      
Sbjct: 15  GDIHISLFYKECKKTVQNFSV-----------HSINGYYNNCIFHRVIKHFMVQTGDPSG 63
Query: 78  XXXXXXESIYGLKFEDENFE-LKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESI+G +FEDE F+ L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 64  DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           FG+V +G  +V  IE V T   D P+ D+ I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G +  E++    PK  +NF AL               +YK   FH+ IKGF+IQ      
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPTG 74
Query: 78  XXXXXXESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDG 132
                 ESIYG  F+DE + ELK++R+G+LSMA+ G    PNTNGSQFFIT +    L+G
Sbjct: 75  TGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNG 133
Query: 133 KHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD 169
           ++V+FG++I G   + ++E+  +  +  PI ++ I D
Sbjct: 134 EYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
           +G + +E++ D+ PKT ENF  LC              +Y    FHR I+ F+IQ     
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT 76
Query: 77  XXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHV 135
                  ES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH 
Sbjct: 77  GTGTGG-ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHT 135
Query: 136 VFGRVIKGMGVVRSIEHV 153
           +FGRV+ G  V+ ++E+V
Sbjct: 136 IFGRVVGGFDVLTAMENV 153

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPN--TGVP--LHYKVIRFHRVIKGFMIQXX 73
           G I + ++ +  PKT  NF  L  G K       +G P    Y    FHRVI+GFMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 74  XXXXXXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
                           KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPTGTGRGGPG----YKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI 167
           +H +FG VI  +   VV +I    T  ND P   V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G I +E+++   PK   NF  LC           +  +Y    FHRV+ GF++Q      
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-----------LEAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 78  XXXXXXESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
                 ESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 137 FGRV 140
           FG+V
Sbjct: 142 FGKV 145

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 14  VELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXX 73
           V  +G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQ  
Sbjct: 12  VTTQGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGG 60
Query: 74  XXXXXXXXXXESIY-----------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
                     + +            G  FEDE +  L H+  G+LSMAN G ++N S+FF
Sbjct: 61  RAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFF 120
Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMT 155
           IT     HL+ KH +FGRV+ G+ V+R  E + T
Sbjct: 121 ITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K LFR+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW  N+ +       +K  G  ++K+  YK AL +Y+K + +L+        +  K+ +L
Sbjct: 135 SWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           R        N + C                A+    +N K L R+G+A++A+ND + A  
Sbjct: 195 RLAS---HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 269 NSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C             +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 329 PNDGG-IKKELAVAKKKIHERREQEKKQYRKMFQ 361
           P     + +E+ +  ++  E++   +  Y KMFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 78/162 (48%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++++ +KK  E  E++++ Y  MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++ K  GN +YK+ DY+ A+  Y+KAL           +D   +S+        + N
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----------LDPNNASA--------WYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N KA +R+G AY    D   A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAKAKQNLGNAKQK 123

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 206 SWWMNAVDS------IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+  +       +K  G  ++K   Y  A+ +Y K + +L++ +   G+ E +S + 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY---GLSEKESKAS 312
Query: 260 RKTKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C              + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++ + +KK  E  E++++ Y  MF+
Sbjct: 373 DFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL--DICWEKEGIDEGKSSSLRKTKSQI 266
           + A D  K+ GN  +K++  + A+++Y  A+ Y+  D  ++  G  +  + ++   K+  
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV---KNPC 232
Query: 267 FTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N +AC                 + + + N KALFR+G+A   L  +D+A + F KA K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292
Query: 327 LEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
             P+D  I++EL    ++     +++K+ Y+ +F+
Sbjct: 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
            G I ++++ D  P+TA NF                  HY    FHRVI GFMIQ     
Sbjct: 8   HGTITLKLFADKAPETAANFEQYVKDG-----------HYDGTIFHRVIDGFMIQGGGFE 56
Query: 77  XXXXXXXESIYGLKFEDENFELKHE-------RKGMLSMA-NAGPNTNGSQFFITTTRTS 128
                      G+K +     +K+E       +K  ++MA    P++  +QFFI     +
Sbjct: 57  P----------GMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNA 106
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            LD          + VFG V++G  VV  I+ V TG      D P+ DV I
Sbjct: 107 FLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGFYNNT---------IFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM VV  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L+P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N+ ++    GN +YK+ DY  A+  Y+KAL                   L    ++ + N
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LYPNNAEAWYN 48
Query: 270 SSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                             + A+    +N +A +  G AY    D D A+E ++KAL+L P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Query: 330 NDGGIKKELAVAKKK 344
           N+   K+ L  AK+K
Sbjct: 109 NNAEAKQNLGNAKQK 123

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
           AV  I   GN  Y++   K A  KY  A+  L     KE     +   L +  + +  N 
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 72
Query: 271 SACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C                 +   DDNVKA F++G+A+ A+ +   A   F K L+L+P 
Sbjct: 73  CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPA 132
Query: 331 DGG-IKKELAVAKKKIHERREQEKKQYRKMF 360
               + +EL   + +I ++ E++K ++R +F
Sbjct: 133 LAPVVSRELQALEARIRQKDEEDKARFRGIF 163

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX- 76
           G I+++ ++D  P+T +NF   C   +G   NT          FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC--REGFYNNT---------IFHRVINGFMIQGGGFEP 57
Query: 77  -XXXXXXXESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK- 133
                   E I      + N  LK+ R G L+MA    P++  +QFFI       L+   
Sbjct: 58  GMKQKATKEPIK----NEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDNDFLNFSG 112
Query: 134 -------HVVFGRVIKGMGVVRSIEHVMTG----DNDCPIADVTI 167
                  + VF  V+ GM  V  I+ V TG      D P  DV I
Sbjct: 113 ESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXXX 77
           G + VE++    P    NF  LC           +  +Y    FHRV+K F++Q      
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-----------LEGYYVNTIFHRVVKDFIVQGGDPTG 79
Query: 78  XXXXXXESIY-GLKFEDENF-ELKHERKGMLSMANAGPN--------------TNGSQFF 121
                 ++ + G  F+ E    LK   +G++ +AN G +              TNG+QFF
Sbjct: 80  TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 122 ITTTRTSHLDGKHVVFGRV 140
           IT  R   L+  + +FG+V
Sbjct: 140 ITLARADVLNNAYTLFGKV 158

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P   L  S      G I +E+     P + +NF            N+G    Y    FHR
Sbjct: 5   PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
           VI GFMIQ             +   +K E +N  L++ R G ++MA  A  ++  SQFFI
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
                + LD G+    + VFG+V+KGM V   I  V T D     + P   V I     +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 165
Query: 174 P 174
           P
Sbjct: 166 P 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P   L  S      G I +E+     P + +NF            N+G    Y    FHR
Sbjct: 5   PHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYV--------NSGF---YNNTTFHR 48
Query: 64  VIKGFMIQXXXXXXXXXXXXESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFI 122
           VI GFMIQ             +   +K E +N  L++ R G ++MA  A  ++  SQFFI
Sbjct: 49  VIPGFMIQGGGFTEQMQQKKPNP-PIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFI 105
Query: 123 TTTRTSHLD-GK----HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGEI 173
                + LD G+    + VFG+V+KGM V   I  V T D     + P   V I     +
Sbjct: 106 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165
Query: 174 P 174
           P
Sbjct: 166 P 166

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGE------KGIGP---NTGVPL 54
           PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+       G G    N  +  
Sbjct: 15  PRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINR 74
Query: 55  HYKVIRFHRVIKGFMIQXXXXXXXXXXXXESIYGLKFEDE-------NFELKHERKGMLS 107
            Y+  +FH V+    I              ++Y     DE       ++   HE KG+LS
Sbjct: 75  TYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLS 130
Query: 108 MA----NAGPNTNGSQFFITT--TRTSH----LDGKHVVFGRVIKGMGVVRSIEHVMTGD 157
           +      +G     S F IT    R S+    LD   VV G+V  G+ V+  I  ++   
Sbjct: 131 LVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 158 NDCPIADVTITDCG 171
                   +I  CG
Sbjct: 191 AGRKYPTFSIGKCG 204

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 70/171 (40%), Gaps = 41/171 (23%)
Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQXXXXX 76
            G I +E+     PKT ENF  L   +KG         HY    FHRVI GFMIQ     
Sbjct: 12  HGVIKLELDEAKAPKTVENF--LNYVKKG---------HYDGTIFHRVINGFMIQGGGFE 60
Query: 77  XXXXXXXESIYGLKFEDENFELKHERKGML-------SMANAG-PNTNGSQFFITTTRTS 128
                      GLK +  +  + +E    L       +MA    P++  +QFFI      
Sbjct: 61  P----------GLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNE 110
Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTI 167
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACX 274
           IK  GNE +KK +   A+ KY++AL +      +E  D+      +  +     N + C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 275 XXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
                           ++   +NVKAL++ G A M    ++ A E+  KA  L PN+  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 335 KKELAVAKKKIHERREQEKKQYRKMF 360
           +    +   K+ E R+++K  +  MF
Sbjct: 159 RNSYELCVNKLKEARKKDKLTFGGMF 184

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK 261
           P   +   ++V+ ++  GNE +K  DY  AL  Y +AL          G+D     +  +
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQAL----------GLD-----ATPQ 62
Query: 262 TKSQIFTNSSACXXXXXXXXXXXXXTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
            ++ +  N +AC                A+     +VKAL+R+ QA   L  +D AV   
Sbjct: 63  DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122
Query: 322 EKALKLEPND 331
           ++ + LEP +
Sbjct: 123 QRCVSLEPKN 132

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK 344
           +N +A +  G AY    D D A+E ++KAL+L+PN+   K+ L  AK+K
Sbjct: 41  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	0.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-122
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-122
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-121
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-116
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-115
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-114
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-113
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-110
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-110
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-108
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-107
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-107
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-106
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-106
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-106
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-106
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-106
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-102
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-89
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	6e-78
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	4e-76
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-74
2b71_A	196	Cyclophilin-like protein; structural genomics, str	3e-73
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	3e-69
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	4e-69
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	6e-68
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-65
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	7e-65
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	5e-64
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	2e-56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-53
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-51
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	4e-44
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-43
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	3e-43
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	6e-43
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	4e-32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	9e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-24
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-24
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-21
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  560 bits (1446), Expect = 0.0
 Identities = 174/360 (48%), Positives = 234/360 (65%), Gaps = 3/360 (0%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   
Sbjct: 13  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 72

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 73  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 132

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 133 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 191

Query: 181 ISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
           I      GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LR
Sbjct: 192 IFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA 300
           Y++    +   ++   + L+        N  ACKLK+ D +GA+     A+     N KA
Sbjct: 252 YVE--GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF 360
           L+R+ Q +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y KMF
Sbjct: 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  349 bits (897), Expect = e-122
 Identities = 104/173 (60%), Positives = 126/173 (72%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           + RPRCF DI+I  +  GR++ E+++DV PKT ENFR LCTGEKG G +T  PLHYK   
Sbjct: 7   VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCL 66

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FM+QGGD S G+G GGESIYG  FEDE+F +KH ++ +LSMAN G +TNGSQF
Sbjct: 67  FHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FITT  T HLDG HVVFG+VI G  VVR IE+  T     P A+V I  CGE+
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  348 bits (896), Expect = e-122
 Identities = 97/174 (55%), Positives = 118/174 (67%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
              P+C  DI I  E  GRI+ ++++D+ PKT +NF  LC+GEKG+G  TG  L YK   
Sbjct: 17  RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRV+K FMIQGGD S G+G GGESIYG  F+DENF LKH+R  +LSMAN G +TNGSQF
Sbjct: 77  FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           FITT    HLDG HVVFG VI G  V+  IE++ T     P ADV + DCG + 
Sbjct: 137 FITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  346 bits (889), Expect = e-121
 Identities = 100/171 (58%), Positives = 123/171 (71%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYK   FH
Sbjct: 6   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 65

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 66  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 125

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 126 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  333 bits (856), Expect = e-116
 Identities = 104/174 (59%), Positives = 134/174 (77%), Gaps = 2/174 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG  +G PLH+K  +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           F+ T +T  LDGKHVVFGRV++G+ VV+++E   +  +  P+ D  I DCG++ 
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLK 172

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  331 bits (852), Expect = e-115
 Identities = 97/171 (56%), Positives = 120/171 (70%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
            P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YK   FH
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFH 66

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  329 bits (845), Expect = e-114
 Identities = 102/171 (59%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
              P  + DISIG    GRI +E++ D +P TAENFRALCTGEKG+G  +G PL Y    
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSF 75

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + GDGTGGESIYG KF DENF   H+   +LSMANAGPNTNGSQF
Sbjct: 76  FHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQF 135

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           FITT     LDGKHVVFG+V++GM VV+SIE   +  N  P   V IT  G
Sbjct: 136 FITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  324 bits (833), Expect = e-113
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  319 bits (819), Expect = e-110
 Identities = 98/179 (54%), Positives = 122/179 (68%), Gaps = 8/179 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
            + + D+ IG E  GR+I  ++   +PKT +NF AL TGEKG G        YK  +FHR
Sbjct: 16  VKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHR 67

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD + GDGTGG+SIYG +F DENF+LKH   G +SMANAG +TNGSQFFIT
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 127

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGIS 182
           T +T+ LDGKHVVFG+V++GM VVR +E   T   D P+ DV I DCG+I       I+
Sbjct: 128 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIA 186

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  320 bits (821), Expect = e-110
 Identities = 83/176 (47%), Positives = 119/176 (67%), Gaps = 6/176 (3%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
            + P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE  +     +P+ YK   
Sbjct: 57  PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV---NNLPVGYKNTI 113

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QF
Sbjct: 114 FHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 173

Query: 121 FITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           FITT +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 174 FITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  313 bits (805), Expect = e-108
 Identities = 92/171 (53%), Positives = 108/171 (63%), Gaps = 9/171 (5%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
             + + D+ I  E  GRI + ++    P T ENFR LCTGE G G        YK   FH
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG--------YKDSIFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVI+ FMIQGGD +  DGTGG+SIYG KF DEN  +KH   G LSMANAGPNTNGSQFFI
Sbjct: 63  RVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFI 121

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TT  T  LDG+HVVFG+V+ GM VV  IE   T  +D P+  V I   GE+
Sbjct: 122 TTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  313 bits (803), Expect = e-107
 Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 22/199 (11%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG---------VP 53
            PR ++DI +  E+ GR+ ++++ D  P   ENF  L  G+     + G         + 
Sbjct: 14  NPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHIN 73

Query: 54  LHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFED---ENFELKHERKGMLSMA- 109
             Y+  +FH V+    I  GDI   +G+   ++Y  +       ++   HE KG+LS+  
Sbjct: 74  RTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVP 133

Query: 110 ---NAGPNTNGSQFFIT------TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC 160
               +G     S F IT      +     LD   VV G+V  G+ V+  I  ++      
Sbjct: 134 YTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGR 193

Query: 161 PIADVTITDCGEIPEGADD 179
                +I  CG   + +  
Sbjct: 194 KYPTFSIGKCGAYLDSSQA 212

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  309 bits (794), Expect = e-107
 Identities = 96/173 (55%), Positives = 117/173 (67%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG G        YK   
Sbjct: 1   MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG--------YKGST 52

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 53  FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 112

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 113 FICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 164

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  309 bits (794), Expect = e-106
 Identities = 86/176 (48%), Positives = 110/176 (62%), Gaps = 9/176 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
            A    + D+    E  GRI++++ +D++PKTA+NFR LC   KG G        YK   
Sbjct: 25  EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--------YKGST 76

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM+QGGD +A +GTGG SIYG KF DENFELKH ++G+LSMAN G +TNGSQF
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPE 175
           FIT  +T  LD KHVVFG V++GM VV  I    +          + I DCG +  
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGS 192

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  307 bits (790), Expect = e-106
 Identities = 92/173 (53%), Positives = 116/173 (67%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
            + P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG G        +K   
Sbjct: 9   RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG--------FKGSS 60

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQF
Sbjct: 61  FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+T  +T  LDGKHVVFG V +G+ V+R IE   +  +  P   V I DCGE 
Sbjct: 121 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEY 172

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  307 bits (790), Expect = e-106
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
              PR F DI IG    GRI++E+ +D++P+TAENFRALCTGE+G G        Y    
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG--------YHNCC 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHRVI  FM QGGD   GDGTGG+SIYG KF+DENF+L+HE  G+LSMAN+GPNTNGSQF
Sbjct: 60  FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI TT+   LDGKHVVFGRV+ G  VV+ +E V +  +      V I+ CGE+
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGEL 171

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  307 bits (788), Expect = e-106
 Identities = 93/172 (54%), Positives = 119/172 (69%), Gaps = 9/172 (5%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
           A    F +ISI  + EGRI+ ++Y++ +PKTA+NFR L TG+ G G        YK   F
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG--------YKDSIF 52

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFF 121
           HRVI  FM+QGGD +  +GTGG+SIYG KF DENF++KH + G+LSMANAG NTNGSQFF
Sbjct: 53  HRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFF 112

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           ITT  TS LDGKHVVFG VI+G+ +VR +E   +  +    A + ITDCG +
Sbjct: 113 ITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGS-ASGKTNATIKITDCGTV 163

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  307 bits (789), Expect = e-106
 Identities = 97/173 (56%), Positives = 118/173 (68%), Gaps = 9/173 (5%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M  P  F DI++  E  GR+  E++ D +PKTAENFRAL TGEKG G        YK   
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSC 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I GFM QGGD +  +GTGG+SIYG KFEDENF LKH   G+LSMANAGPNTNGSQF
Sbjct: 72  FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           FI T +T  LDGKHVVFG+V +GM +V ++E   +  N      +TI DCG++
Sbjct: 132 FICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQL 183

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  297 bits (763), Expect = e-102
 Identities = 87/180 (48%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 2   ARPRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHY 56
           +  + F D+            GRI+  +++  +PKTA+NFR LC    G G        Y
Sbjct: 1   SMSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG--------Y 52

Query: 57  KVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTN 116
           +   FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTN
Sbjct: 53  RESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTN 112

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           GSQFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 113 GSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  267 bits (684), Expect = 1e-89
 Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 23/194 (11%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y   +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC-----GEIPEGADDGISNFFNDGDSY 191
           FGRV +G+G+V  +  V T   D P+ DV I        G    G+  G      DG ++
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAF 188

Query: 192 PD-----WPADLDQ 200
           P+     +P D+ +
Sbjct: 189 PEIHVAQYPLDMGR 202

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  235 bits (602), Expect = 6e-78
 Identities = 72/154 (46%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD S 
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS- 62

Query: 78  GDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F  L H +  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 63  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  231 bits (591), Expect = 4e-76
 Identities = 79/170 (46%), Positives = 96/170 (56%), Gaps = 14/170 (8%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
            P+   D +I     G I  +++    PKT ENF        G         +Y    FH
Sbjct: 16  GPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS--RNG---------YYNGHTFH 64

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFF 121
           R+IKGFMIQ GD + G G GGESI+G +FEDE +  L+H+R   LSMANAG NTNGSQFF
Sbjct: 65  RIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFF 123

Query: 122 ITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           IT   T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 124 ITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  226 bits (579), Expect = 2e-74
 Identities = 74/151 (49%), Positives = 96/151 (63%), Gaps = 13/151 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I++E+Y    PKT +NF  L    +G         +Y   +FHR+IK FMIQGGD + 
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG---------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+T   T  LDGKH +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTI 167
           FGRV +G+G+V  +  V T   D P+ DV I
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  224 bits (574), Expect = 3e-73
 Identities = 76/154 (49%), Positives = 87/154 (56%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC  E G          Y    FHRVI  F+IQGGD + 
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG---------FYDNTIFHRVIPNFVIQGGDPT- 95

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 96  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           F RV K M  + +I  V T   + PI D+ I   
Sbjct: 156 FARVSKNMTCIENIASVQTTATNKPIFDLKILRT 189

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  214 bits (546), Expect = 3e-69
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 17/174 (9%)

Query: 2   ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRF 61
            R   +      +   G +  E++    PK  +NF AL               +YK   F
Sbjct: 10  GRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIF 58

Query: 62  HRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENF-ELKHERKGMLSMANAG----PNTN 116
           H+ IKGF+IQGGD + G G GGESIYG  F+DE + ELK++R+G+LSMA+ G    PNTN
Sbjct: 59  HKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTN 117

Query: 117 GSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           GSQFFIT +    L+G++V+FG++I G   + ++E+  +  +  PI ++ I D 
Sbjct: 118 GSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI 171

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  214 bits (547), Expect = 4e-69
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 23/165 (13%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ P+  ++F  LC  +           ++    FHR I+ FMIQGG    
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAEL 64

Query: 78  GD----GTGGESIY-------GLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTT 125
                     +S         G  FEDE +  L H+  G+LSMAN G ++N S+FFIT  
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFK 124

Query: 126 RTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
              HL+ KH +FGRV+ G+ V+R  E + T   D P+    + + 
Sbjct: 125 SCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI 169

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  210 bits (536), Expect = 6e-68
 Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y    FHR IKGFM+Q GD + 
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT- 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  205 bits (523), Expect = 1e-65
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E+++   PK   NF  LC   +          +Y    FHRV+ GF++QGGD + 
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC--LEA---------YYDNTIFHRVVPGFIVQGGDPT- 81

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G+GGESIYG  F+DE +  L+  R+G+++MANAG + NGSQFF T  R   L+ KH +
Sbjct: 82  GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141

Query: 137 FGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V    +  +  +  V   D++ P     I  C
Sbjct: 142 FGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  203 bits (519), Expect = 7e-65
 Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G + +E++ D+ PKT ENF  LC  +K          +Y    FHR I+ F+IQGGD + 
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH---------YYDGTIFHRSIRNFVIQGGDPT- 76

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++LD KH +
Sbjct: 77  GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FGRV+ G  V+ ++E+V +    D P  ++ I   
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDAT 171

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  201 bits (512), Expect = 5e-64
 Identities = 69/158 (43%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKG-IGPNTGVPLH---YKVIRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K     N         Y    FHRVI+GFMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 74  DISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDG 132
           D + G G GG    G KF DE + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 133 KHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTIT 168
           +H +FG VI  +   VV +I    T  ND P   V I 
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  183 bits (465), Expect = 2e-56
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G + VE++    P    NF  LC   +G         +Y    FHRV+K F++QGGD + 
Sbjct: 31  GDLDVELWARECPLACRNFVQLC--LEG---------YYVNTIFHRVVKDFIVQGGDPT- 78

Query: 78  GDGTGG--ESIYGLKFEDE-NFELKHERKGMLSMANAGPN--------------TNGSQF 120
           G G GG   +  G  F+ E +  LK   +G++ +AN G +              TNG+QF
Sbjct: 79  GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 121 FITTTRTSHLDGKHVVFGRVI-KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FIT  R   L+  + +FG+V    +  +     +  G  D P+    I   
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV 189

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  179 bits (455), Expect = 7e-56
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 1/154 (0%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +V++++  GNE + ++DYK A+  YR AL  LD    +E   E +   L +    ++ 
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N S C L +GDL  A   +   ++  + N KALFR+ +A +A   +D A E  +  L+  
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 329 PNDGG-IKKELAVAKKKIHERREQEKKQYRKMFQ 361
           P     + +E+ +  ++  E++   +  Y KMFQ
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  173 bits (440), Expect = 3e-53
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 92

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

Query: 329 PNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           PN+  I+    +   K+ E R+++K  +  MF 
Sbjct: 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  174 bits (443), Expect = 6e-52
 Identities = 46/245 (18%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 127 TSHLDGKHVVF-----GRVIKGMGV-VRSIEH----VMTGDNDCPIADVTITDCGEIPEG 176
            +  + + +        + + G+ + V S++     ++    +             +P  
Sbjct: 87  DTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPM 146

Query: 177 ADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYR 236
           AD     +  +   + +      ++   +   + A D  K+ GN  +K++  + A+++Y 
Sbjct: 147 AD---LLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203

Query: 237 KALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD 296
            A+ Y+   +  +   + +       K+    N +AC +KL     A+      + + + 
Sbjct: 204 MAIAYMGDDFMFQLYGKYQDM-ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           N KALFR+G+A   L  +D+A + F KA K  P+D  I++EL    ++     +++K+ Y
Sbjct: 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322

Query: 357 RKMFQ 361
           + +F+
Sbjct: 323 KGIFK 327

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  172 bits (437), Expect = 4e-51
 Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 9/193 (4%)

Query: 169 DCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDY 228
           +  +IP  A+          +   +     +    E    +     +K  G  ++K+  Y
Sbjct: 110 EKFQIPPNAELKYELHLKSFEKAKESW---EMNSEEK---LEQSTIVKERGTVYFKEGKY 163

Query: 229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE 288
           K AL +Y+K + +L+        +  K+ +LR        N + C LKL     A+    
Sbjct: 164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA---SHLNLAMCHLKLQAFSAAIESCN 220

Query: 289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER 348
            A+    +N K L R+G+A++A+ND + A   F+K L+L PN+   K +LAV +++I  +
Sbjct: 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280

Query: 349 REQEKKQYRKMFQ 361
             +EKK Y  MF+
Sbjct: 281 LAREKKLYANMFE 293

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  148 bits (377), Expect = 4e-44
 Identities = 55/172 (31%), Positives = 74/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMI 70
           VEL    G I +E+     PKT ENF      +KG         HY    FHRVI GFMI
Sbjct: 6   VELHTNHGVIKLELDEAKAPKTVENFLNYV--KKG---------HYDGTIFHRVINGFMI 54

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG           +       +E N  LK++    ++MA    P++  +QFFI      
Sbjct: 55  QGGGFE-PGLKQKPT--DAPIANEANNGLKNDT-YTIAMARTNDPHSATAQFFINVNDNE 110

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
            L+          + VFG+V++G  +V  I+ V TG      D P  DV I 
Sbjct: 111 FLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIE 162

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  155 bits (392), Expect = 2e-43
 Identities = 39/169 (23%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
            +    +    +    +     +K  G  ++K   Y  A+ +Y K + +L++ +   G+ 
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY---GLS 305

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
           E +S +        F N + C LKL +   A+   + A+     N K L+R+G+A + +N
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365

Query: 313 DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           + ++A   FEK L++ P +   + ++++ +KK  E  E++++ Y  MF+
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  146 bits (371), Expect = 3e-43
 Identities = 53/168 (31%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMI 70
           V L    G I +E+     P + +NF        G          Y    FHRVI GFMI
Sbjct: 7   VLLTTSAGNIELELDKQKAPVSVQNFVDYV--NSG---------FYNNTTFHRVIPGFMI 55

Query: 71  QGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTSH 129
           QGG  +       +    +K E +N  L++ R G ++MA  A  ++  SQFFI     + 
Sbjct: 56  QGGGFT-EQMQQKKPNPPIKNEADN-GLRNTR-GTIAMARTADKDSATSQFFINVADNAF 112

Query: 130 LDG-----KHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTIT 168
           LD       + VFG+V+KGM V   I  V T D     + P   V I 
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  145 bits (369), Expect = 6e-43
 Identities = 53/172 (30%), Positives = 75/172 (43%), Gaps = 32/172 (18%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMI 70
           V      G I+++ ++D  P+T +NF   C   +G          Y    FHRVI GFMI
Sbjct: 2   VTFHTNHGDIVIKTFDDKAPETVKNFLDYC--REG---------FYNNTIFHRVINGFMI 50

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMA-NAGPNTNGSQFFITTTRTS 128
           QGG     +    +       ++E N  LK+ R G L+MA    P++  +QFFI      
Sbjct: 51  QGGG---FEPGMKQKATKEPIKNEANNGLKNTR-GTLAMARTQAPHSATAQFFINVVDND 106

Query: 129 HLDGK--------HVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTIT 168
            L+          + VF  V+ GM  V  I+ V TG +    D P  DV I 
Sbjct: 107 FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE 158

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  122 bits (308), Expect = 4e-32
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 52/190 (27%)

Query: 17  EGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDIS 76
           +    + +     P TA NF  L   E+           Y  +   R   GF++Q GD  
Sbjct: 187 DCVFRIVLDGYNAPVTAGNFVDLV--ERHF---------YDGMEIQRSD-GFVVQTGDPE 234

Query: 77  AGDGTG--------------------GESIYGLKFED-----ENFELKHERKGMLSMANA 111
                                         YG   E+         +     G ++MA  
Sbjct: 235 GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE 294

Query: 112 G--PNTNGSQFFI-------TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI 162
               ++  SQ F        T + ++ LDG++ VFG V      +  ++    GD    I
Sbjct: 295 EFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLK---VGD---VI 348

Query: 163 ADVTITDCGE 172
             + +    E
Sbjct: 349 ESIQVVSGLE 358

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  103 bits (260), Expect = 3e-27
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
             S P  P     TP       ++V+ ++  GNE +K  DY  AL  Y +AL        
Sbjct: 9   TVSGPGTPEPRPATPGA-----SSVEQLRKEGNELFKCGDYGGALAAYTQALGL------ 57

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
                     +  + ++ +  N +AC LKL D   A  +   A+     +VKAL+R+ QA
Sbjct: 58  ---------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345
              L  +D AV   ++ + LEP +   ++ L       
Sbjct: 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  101 bits (255), Expect = 7e-27
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 18/136 (13%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M  V+ +K  GN+     +   AL+ Y +A+                   L      +++
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAI------------------KLDPHNHVLYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N SA   K GD + A  D    +    D  K   R+  A   LN  + A  ++E+ LK E
Sbjct: 43  NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

Query: 329 PNDGGIKKELAVAKKK 344
            N+  +K+ L   + +
Sbjct: 103 ANNPQLKEGLQNMEAR 118

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  102 bits (255), Expect = 2e-26
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSL 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 333 GIKKELAVAKKKIHERREQE 352
             K +     K + ++  + 
Sbjct: 116 DAKMKYQECNKIVKQKAFER 135

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 99.7 bits (249), Expect = 9e-26
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                  +     +  +TN + 
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAI------------------TRNPLVAVYYTNRAL 51

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 333 G-----IKKELAVAKKKIHERREQEK 353
                 I   L +AKKK     E+ +
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIEERR 137

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 97.7 bits (244), Expect = 4e-25
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 18/131 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GNE++KK DY  A+R Y +A++                       + +++N +A
Sbjct: 14  QEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAA 55

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D +  +R     +K   R+    +A+ +   A  ++E AL+++P++ 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 333 GIKKELAVAKK 343
             ++ +    +
Sbjct: 116 EAREGVRNCLR 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 97.5 bits (243), Expect = 1e-24
 Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 20/145 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           D +K  GN    +++Y  A+  Y +AL                  S+        +N +A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQAL------------------SIAPANPIYLSNRAA 53

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
                G  + A  D E A        KA  R G A   + D   A E++EK ++ E N G
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 333 --GIKKELAVAKKKIHERREQEKKQ 355
              +K+ L   K+KI E     +  
Sbjct: 114 SDAMKRGLETTKRKIEEANRGAEPP 138

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 95.7 bits (239), Expect = 2e-24
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K  GNE  K ++++ A+  Y KA+                   L    +  F N +A
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAI------------------ELNPANAVYFCNRAA 54

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
              KLG+  GA+ D E A+       KA  R G A  +LN    AV  ++KAL+L+P++ 
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 333 GIKKELAVAKKKIHE 347
             K  L +A+ K+ E
Sbjct: 115 TYKSNLKIAELKLRE 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 93.8 bits (234), Expect = 1e-23
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GNE ++K DY  A++ Y +A++                       +++++N +A
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAA 58

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
           C  KL + + AL D E  ++     +K   R+  A  A+ D   A++ ++KAL L+ +  
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 333 GIKKELAVAKKK 344
                       
Sbjct: 119 EAADGYQRCMMA 130

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 90.4 bits (225), Expect = 2e-22
 Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 20/139 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           +  ++ G E++ K D+  A++ Y + ++                       ++ ++N +A
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--N 330
              KL     A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +   N
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 331 DGGIKKELAVAKKKIHERR 349
           +G   +E+     K  ++R
Sbjct: 107 NGSSAREIDQLYYKASQQR 125

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 91.5 bits (227), Expect = 2e-21
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 23/148 (15%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKKKIHERREQEKKQ 355
                 I   L +AKKK     E+ +  
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIH 134

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 29/148 (19%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
              K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAK------------------ELDPTNMTYITNQAA 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              + GD        E A+  G +N        KA  R G +Y        A+  + K+L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 326 KLEPNDGGIKKELAVAKKKIHERREQEK 353
                   + K+   A+K +   +EQE+
Sbjct: 107 AEHRTP-DVLKKCQQAEKIL---KEQER 130

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 8e-18
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 22/148 (14%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSVAEYTVRSKERI 278

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 331 DGGIKKELAVAKKKIHERREQEKKQYRK 358
           D  I++ L  A++          KQ +K
Sbjct: 339 DQQIREGLEKAQR--------LLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 22/144 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             + +   DY  A+    K L                   +    +++    + C +K G
Sbjct: 127 ALDAFDGADYTAAITFLDKILE------------------VCVWDAELRELRAECFIKEG 168

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +   DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228

Query: 339 AVAKKKIHERRE----QEKKQYRK 358
              KK               +Y  
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTD 252

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 10  GKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMG 51

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    +    D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 339 AVAKKKIHERREQEK 353
           +   K    +R + +
Sbjct: 112 SQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       ++   E +S  ++  + Q   + +       
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA 134

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                   L  + +  + N S 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAI------------------ELNPSNAIYYGNRSL 48

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 49  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108

Query: 333 GIKKELAVAKKKIHERR 349
             K +     K + ++ 
Sbjct: 109 DAKMKYQECNKIVKQKA 125

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS 270
            ++ +     E  +   Y  A  KY   ++           +     S+ +   +     
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK----------TE----PSIAEYTVRSKERI 301

Query: 271 SACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
             C  K      A+      ++   DNV AL  + +AY+     D A++ +E A +   N
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 331 DGGIKKELAVAKKKIHERREQEKKQYRK 358
           D  I++ L  A++     ++ +K+ Y K
Sbjct: 362 DQQIREGLEKAQR---LLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +         AL ++  A+                           +   +   L +G
Sbjct: 33  GKKLLAAGQLADALSQFHAAV------------------DGDPDNYIAYYRRATVFLAMG 74

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
             K AL D    ++   D   A  ++G   +    +D A + F+K LK  P++   K+  
Sbjct: 75  KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134

Query: 339 AVAKK 343
           +   K
Sbjct: 135 SQLIK 139

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               +   DY  A+    K L                 + LR+ +++       C +K G
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV-----------CVWDAELRELRAE-------CFIKEG 191

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           + + A+ D + A +  +DN +A ++    Y  L D + ++    + LKL+ +        
Sbjct: 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251

Query: 339 AVAKKKIHERRE----QEKKQYRK 358
              KK               +Y  
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTD 275

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G+   K+     A   ++K L+       +    E +S  ++  + Q   + +      G
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D   A+   +  +     + +    + + ++   +   A+   + A KL+ ++
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%)

Query: 274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
            L  G L  AL     A+    DN  A +R+   ++A+    AA+    K ++L+ +   
Sbjct: 36  LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

Query: 334 IKKELAVAKKK 344
            + +      K
Sbjct: 96  ARLQRGHLLLK 106

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 26/138 (18%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
            + K  GN  YK++D++ A   Y KA+                   L  +    + N +A
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAI------------------ELDPSNITFYNNKAA 50

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKAL 325
              +       +   E A+  G +         KA+ R G A+   ND+  AV+ F ++L
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 326 KLEPNDGGIKKELAVAKK 343
               +   + K++   +K
Sbjct: 111 SEFRDP-ELVKKVKELEK 127

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 24/124 (19%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           M+  +  K  GN  +K+  Y+ A+  Y + +                  + +      ++
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLI------------------TAQPQNPVGYS 42

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKAL------FRQGQAYMALNDVDAAVESFE 322
           N +   +KLG+   A+   +  +R               +R   A  A+  V   V   +
Sbjct: 43  NKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102

Query: 323 KALK 326
           +  +
Sbjct: 103 ELPE 106

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 20/161 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           LD+   +         S++  G   + K D   A    +KA+                  
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------------- 266

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                +   +   +       D        + A++   +N    + +GQ    L + D A
Sbjct: 267 ---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
            + F+KA +L+P +     +LA    +   + +  +  + +
Sbjct: 324 GKDFDKAKELDPENIFPYIQLACLAYRE-NKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ ++ + Y  A++ Y  AL                     K     ++N SAC + +G
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL-------------------KEDPVFYSNLSACYVSVG 53

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEK-ALKLEPNDGGIKKE 337
           DLK  +  +  A+    D  K L R+  A   L     A+      +L  + ND  I+  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113

Query: 338 LAVAKKKIHERREQEK 353
           L     K    + +EK
Sbjct: 114 LERNLNKQAMSKLKEK 129

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 18/137 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  Q+Y  A + + KA                    L       +   +    +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE------------------LDPENIFPYIQLACLAYREN 352

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
                      A R   +  +      +     ND D A++ ++ A++LE    GI   +
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412

Query: 339 AVAKKKIHERREQEKKQ 355
           A    K          +
Sbjct: 413 APLVGKATLLTRNPTVE 429

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 27/152 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-- 276
                 K D+  AL++Y  A+                   L      I+   +    K  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKAT 420

Query: 277 -------LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                  + +   A    E A +    + +A     Q  +   D+D A+  FE++  L  
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
                 + +  A+    ++R +      K  Q
Sbjct: 481 TMEEKLQAITFAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 6/147 (4%)

Query: 185 FNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI 244
           F D D+    P +L   P +                  +     ++    Y ++      
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA--- 186

Query: 245 CWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ 304
               + +  G S+  +++         +        +  L       +  +    +L   
Sbjct: 187 ---DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 305 GQAYMALNDVDAAVESFEKALKLEPND 331
           G      ND   A E  +KA++L P  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRV 270

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G E++ K D+  A++ Y + ++                       ++ ++N +A   KL 
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLM 187

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+ D   A+    + V+A  R+  A +A+ +  +A+E+ + A   +          
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247

Query: 339 AVAKKK 344
            + +  
Sbjct: 248 EIDQLY 253

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 33/146 (22%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN+ YK + +  A+  Y KA                              N +A + + G
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL-------------------HKDITYLNNRAAAEYEKG 52

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------G 332
           + + A+     A+  G +         +++  + +    +   +K ++            
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA 112

Query: 333 GIKKELAVAKKKIHERREQEKKQYRK 358
            I  +L           E+E K+   
Sbjct: 113 DILTKL--------RNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  +    L   +K + Y                     KS     ++    KL 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY-------------------YQKSLTEHRTADILTKLR 119

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           + +  L   E       +  +    +G+ Y   +D   AV+++ + +K  P D
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 31/169 (18%)

Query: 186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC 245
           +DG +          + + L             G   Y+   +  A + ++         
Sbjct: 2   SDGGTLAML---RGLSEDTLEQLYA-------LGFNQYQAGKWDDAQKIFQALCM----- 46

Query: 246 WEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQG 305
                        L    ++ F    AC+  LG  + AL    +      +  +  F   
Sbjct: 47  -------------LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93

Query: 306 QAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKKKIHERREQ 351
           + ++ L D+D A   F  A  L         +        + +  R+++
Sbjct: 94  ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKDR 142

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 2/140 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +   +      A+  +R+ +  L+I    E           +  S++ T  +    K  
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +   A L  +  ++   +NV  L    +  +       A+  +EK L+LE ++      L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 339 AVAKKKIHERREQEKKQYRK 358
                   E+ +++ +   K
Sbjct: 129 GNYYYLTAEQEKKKLETDYK 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 19/123 (15%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           N VD ++        +   K ALR Y K L                   L          
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKIL------------------QLEADNLAANIF 127

Query: 270 -SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
             +   L     K  L      +        A +R G + +     + A  S +K +   
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187

Query: 329 PND 331
           P+ 
Sbjct: 188 PST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +V  + ++  A +       AV  F + + L  + 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR 37

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 28/157 (17%)

Query: 175 EGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRK 234
           E     + +  N G +  D         + +    +       +  + Y K   + A   
Sbjct: 9   ESISTAVIDAINSGATLKD---INAIPDDMMDDIYS-------YAYDFYNKGRIEEAEVF 58

Query: 235 YRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG 294
           +R    Y                             +A        + A      A   G
Sbjct: 59  FRFLCIY------------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++   +F  GQ  + L     A E FE  ++   ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   + K D + A+  ++ AL  +            K+ S  K  +  + N      KL 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVK-----------KTQSNEKPWAATWANLGHAYRKLK 530

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A+      +    ++          Y+       A+    ++L + PN+      L
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590

Query: 339 AVAKKK 344
             A ++
Sbjct: 591 KRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 31/138 (22%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEG 254
           ++         +          +  + +  +   L    K L    Y    +        
Sbjct: 298 INGLEKSSDLLLC-------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------- 343

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
                            A   + G+     L +   +    +        G  Y+ +N +
Sbjct: 344 --------------LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389

Query: 315 DAAVESFEKALKLEPNDG 332
             A   F K+  ++P  G
Sbjct: 390 SEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
           G  +    ++  A   Y++AL                +L    E+  +    + S    +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 264 SQIFT----NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
              F          K    D      D   ++   + +   L  +       +     + 
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 320 SFEKALKLEPND 331
              K L+++P +
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           F +    + ++  A+  Y  A R                  L +     +       ++L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAAR------------------LFQGTHLPYLFLGMQHMQL 454

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
           G++  A    + +      +   L   G      +D+  A+  F+ AL L       +K 
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 338 LAVA 341
            A  
Sbjct: 515 WAAT 518

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 196 ADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR---------YLDICW 246
           + L +   + +  ++  D ++++ ++   +Q YK A     K L          +L   +
Sbjct: 68  SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVY 127

Query: 247 EKEG-----IDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL--------------LDT 287
              G             L    S     ++ C +KL D +GAL                 
Sbjct: 128 CCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187

Query: 288 EFAMRDGDDNVKA--LFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  M+DG   ++A   + +GQ Y  L++ D A E +++AL ++   
Sbjct: 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 9/132 (6%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   ++  ++K A + +  AL         E I    +         +  N      KL 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDAL---------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               AL     A+     N       G  +  + + + AV+ F  AL L  +D      L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

Query: 339 AVAKKKIHERRE 350
               +      E
Sbjct: 311 GHCIEMYIGDSE 322

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 25/127 (19%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALR---YLDICWEKEGIDEGKSSSLRKTKSQI 266
             +D +      HY   D+KM  +     +    +   C                     
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP------------------- 60

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKAL 325
                   ++L         +   +     N  + F  G  Y+ + +  + A     KA 
Sbjct: 61  --VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118

Query: 326 KLEPNDG 332
            LE   G
Sbjct: 119 TLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 12/131 (9%)

Query: 228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT 287
           Y M   K   A RYL            K+++L KT    +           +   A+   
Sbjct: 100 YLMVGHKNEHARRYLS-----------KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
             A +        +   G  Y   N+   A   F +AL + P D  +  E+ V   +  E
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE 208

Query: 348 RREQEKKQYRK 358
            +  E K +  
Sbjct: 209 WKTAE-KWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 18/115 (15%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G+    + ++  A+  Y  A +                  L K                
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ------------------LMKGCHLPMLYIGLEYGLT 172

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
            + K A      A+    ++   +   G       +   A + F  AL+     G
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 8/146 (5%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY---LDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
                 + D+  A+++Y  A R     +      G   GK++ L        ++    +L
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL-----ARQSSQDPTQL 439

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
                  A+     A      + +A     Q  + +  +D A+E FE +  L        
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499

Query: 336 KELAVAKKKIHERREQEKKQYRKMFQ 361
           +    A+    ++R +         +
Sbjct: 500 QATTFAEAAKIQKRLRADPIISAKME 525

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 23/161 (14%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L     +     NA  ++   G  H+ K +   A    ++++                  
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---------------- 272

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                    +   +       + +      + A+    +     + +GQ Y  L D   A
Sbjct: 273 ---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
            E F+KA  L P +     +LA    K   +  + +  + +
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQ-GKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN  +  +++  A++ Y+ A+                   L   +   ++N SAC +  G
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTG 73

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK-- 336
           DL+  +  T  A+    D+ KAL R+  A  +L +   A+            DG   +  
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133

Query: 337 -ELAVAKKKIHERREQEKKQYRKMFQ 361
            E  + K+ +    E   K   +  Q
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQ 159

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 18/143 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  ++  QDYK A   ++KA                   SL       +   +    K G
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQ------------------SLNPENVYPYIQLACLLYKQG 358

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               +               +      +      D D A++ ++ A +LE     I   +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 339 AVAKKKIHERREQEKKQYRKMFQ 361
                K      Q  +   ++ +
Sbjct: 419 GPLIGKATILARQSSQDPTQLDE 441

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 K++ +   + ++KA+                   L       + +       L 
Sbjct: 283 ALTLADKENSQEFFKFFQKAV------------------DLNPEYPPTYYHRGQMYFILQ 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           D K A  D + A     +NV    +             +   F +     P    +    
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A          +   KQY  
Sbjct: 385 AEILTDR-GDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           +      +Y  A      AL+ L                   T       +         
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYS----------------ATDEGYLVANDLLTKSTDM 224

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               L          ++   AL   G  +   N++  A    ++++ L P  
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
            +        +                  S S R+  +    N         +   A+  
Sbjct: 2   SHMNGEPDIAQLKG--------------LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKY 47

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++A+    +           Y++  D++  +E   KAL+++P+ 
Sbjct: 48  YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 56.8 bits (137), Expect = 4e-10
 Identities = 19/174 (10%), Positives = 48/174 (27%), Gaps = 31/174 (17%)

Query: 183 NFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL 242
              + G +        + + + L       + +       Y+   Y+ A   ++      
Sbjct: 2   PLGSGGGTIAML---NEISSDTL-------EQLYSLAFNQYQSGXYEDAHXVFQALCV-- 49

Query: 243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALF 302
                           L    S+ F    AC+  +G    A+    +         +  F
Sbjct: 50  ----------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93

Query: 303 RQGQAYMALNDVDAAVESFEKALKLE---PNDGGIKKELAVAKKKIHERREQEK 353
              +  +   ++  A      A +L    P    +   ++   + I  ++E + 
Sbjct: 94  HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 30/167 (17%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 331 PVLCQAHGLTPQQVVAIAS-------HDGGKQALETVQRLLPVLCQAHG----------- 372

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     + V A+        AL
Sbjct: 373 -------LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P            +  +     Q   +   
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL-SRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 16/140 (11%), Positives = 31/140 (22%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     ++   K  L 
Sbjct: 283 SGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNGGGKQALE 324

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A       V A+        AL  V   +    +A  L P         
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ +   +        +
Sbjct: 385 GGGKQALETVQRLL-PVLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                  +  +  L    +A                    L   +     +    K  L 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 154

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A     + V A+   G    AL  V   +    +A  L P         
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ + E  ++      +
Sbjct: 215 GGGKQAL-ETVQRLLPVLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     +    K  L 
Sbjct: 385 GGGKQALETVQRLLPVLCQAHG------------------LTPEQVVAIASHDGGKQALE 426

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            ++  L     A       V A+   G    AL  + A +   + AL    ND
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 24/154 (15%), Positives = 39/154 (25%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +        G      +  +  L    +A             
Sbjct: 161 PVLCQAHGLTPEQVVAIAS-------NGGGKQALETVQRLLPVLCQAHG----------- 202

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A       V A+   G    AL
Sbjct: 203 -------LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P          G K+ L
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQAL 289

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 14/137 (10%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                    A+  +R AL              G   +L   +     +    K  L  ++
Sbjct: 43  KRGGVTAVEAVHAWRNALT-------------GAPLNLTPEQVVAIASHDGGKQALETVQ 89

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
             L     A       V A+        AL  V   +    +A  L P            
Sbjct: 90  RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 149

Query: 342 KKKIHERREQEKKQYRK 358
           K+ + E  +       +
Sbjct: 150 KQAL-ETVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G      +  +  L    +A                    L   +     ++S  K  L 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHG------------------LTPQQVVAIASNSGGKQALE 290

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            ++  L     A       V A+   G    AL  V   +    +A  L P         
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 339 AVAKKKIHERREQEKKQYRK 358
              K+ + E  ++      +
Sbjct: 351 DGGKQAL-ETVQRLLPVLCQ 369

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 36/161 (22%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 654 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 695

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     +++  K  L  ++  L     A     D V A+   G    AL
Sbjct: 696 -------LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 748

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKELAVAKKKI 345
             V   +    +A  L P          G K+ L   ++ +
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 29/140 (20%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q     P+++    +               +  +  L    +A             
Sbjct: 247 PVLCQAHGLPPDQVVAIASN-------IGGKQALETVQRLLPVLCQAH------------ 287

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 288 ------GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L P+ 
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 6e-09
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 36/154 (23%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 552 PVLCQAHGLTPDQVVAIASN-------GGGKQALETVQRLLPVLCQAHG----------- 593

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L + +     ++   K  L  ++  L     A       V A+        AL
Sbjct: 594 -------LTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKEL 338
             V   +    +A  L P+        GG K+ L
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 23/167 (13%), Positives = 41/167 (24%), Gaps = 21/167 (12%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
                 L   P  L+     V +I          +  +  L    +A             
Sbjct: 174 HASRNALTGAPLNLT--PAQVVAIASNNGGKQALETVQRLLPVLCQAHG----------- 220

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+        AL
Sbjct: 221 -------LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P+           K+ + E  ++      +
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL-ETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 20/161 (12%), Positives = 37/161 (22%), Gaps = 32/161 (19%)

Query: 192 PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
           P        T  ++    +               +  +  L    +A             
Sbjct: 586 PVLCQAHGLTQVQVVAIASN-------IGGKQALETVQRLLPVLCQAHGL---------- 628

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                      +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 629 --------TPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

Query: 312 NDVDAAVESFEKALKLEPND-------GGIKKELAVAKKKI 345
             V   +    +A  L            G K+ L   ++ +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLL 721

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 30/167 (17%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP ++    +               +  +  L    +A             
Sbjct: 450 PVLCQTHGLTPAQVVAIASH-------DGGKQALETVQQLLPVLCQAHG----------- 491

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+   G    AL
Sbjct: 492 -------LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             V   +    +A  L P+           K+ + E  ++      +
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL-ETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 231 ALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA 290
           A+   R AL    +             +L   +     +++  K  L  ++  L     A
Sbjct: 172 AVHASRNALTGAPL-------------NLTPAQVVAIASNNGGKQALETVQRLLPVLCQA 218

Query: 291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIKKEL 338
                  V A+        AL  +   +    +A  L P+         G K+ L
Sbjct: 219 HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 29/140 (20%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 281 PVLCQAHGLTPDQVVAIASH-------GGGKQALETVQRLLPVLCQAHG----------- 322

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     +    K  L  ++  L     A     D V A+   G    AL
Sbjct: 323 -------LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 375

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +A  L P+ 
Sbjct: 376 ETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 20/140 (14%), Positives = 35/140 (25%), Gaps = 30/140 (21%)

Query: 196 ADLDQ----TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI 251
             L Q    TP+++    +        G      +  +  L    +A             
Sbjct: 349 PVLCQAHGLTPDQVVAIAS-------NGGGKQALETVQRLLPVLCQAHG----------- 390

Query: 252 DEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
                  L   +     ++   K  L  ++  L     A     D V A+        AL
Sbjct: 391 -------LTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 442

Query: 312 NDVDAAVESFEKALKLEPND 331
             V   +    +   L P  
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 19/149 (12%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           + V +I   G      +  +  L    +A                    L   +     +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG------------------LTPDQVVAIAS 570

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           +   K  L  ++  L     A       V A+        AL  V   +    +A  L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRK 358
                       K+ +   +        +
Sbjct: 631 AQVVAIASHDGGKQALETVQRLL-PVLCQ 658

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 12/110 (10%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
                  K AL   ++ L  L            +   L      +   S+  K  L  ++
Sbjct: 874 IASNIGGKQALETVQRLLPVLC-----------QDHGL-TLDQVVAIASNGGKQALETVQ 921

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             L           D V A+        AL  V   +    +   L PN 
Sbjct: 922 RLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-- 332
            +      AL     A+        A    G+      D   A +++E  L    + G  
Sbjct: 30  AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

Query: 333 GIKKELAVAKKKIHERREQEKKQYR 357
            + KEL V  +++  R +  +  + 
Sbjct: 90  QVVKELQVFLRRL-AREDALEHHHH 113

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           DN+   F  G+ Y      DAA+     AL  +P      K L    +     R   ++ 
Sbjct: 17  DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQA 75

Query: 356 YRK 358
           +  
Sbjct: 76  WES 78

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 18/76 (23%), Positives = 27/76 (35%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 28  LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87

Query: 335 KKELAVAKKKIHERRE 350
              LAV+    H    
Sbjct: 88  HAALAVSHTNEHNANA 103

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K  +   A   +    +                      + + + +    + +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENE 65

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
               A++    A      ++        ++   ++ +AA+ S    L  +P 
Sbjct: 66  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +    +G + + L ++  A  +FE   + EP  
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER 50

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 26/161 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           L+  P   +   N         +   ++   + AL  Y++A+R                 
Sbjct: 36  LEVFPEFAAAHSN-------LASVLQQQGKLQEALMHYKEAIR----------------- 71

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            +  T +  ++N      ++ D++GAL     A++       A       +    ++  A
Sbjct: 72  -ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           + S+  ALKL+P+       LA   + +        ++ +K
Sbjct: 131 IASYRTALKLKPDFPDAYCNLAHCLQIVC-DWTDYDERMKK 170

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE 350
            +  +L           +++ AV  + KAL++ P        LA   ++  + +E
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 15/139 (10%), Positives = 38/139 (27%), Gaps = 18/139 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +      D        ++ L                   L     +        +    
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQ 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
               A +  + A     ++       G A       +AA  ++ +A +L P +  I  +L
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

Query: 339 AVAKKKIHERREQEKKQYR 357
              ++++ + R  +    +
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE 337
            D    LL    A+R    +  A      A + + D  A   + ++ L L P        
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 338 LAVAKKKIHERREQEKKQYRK 358
           L   +     R  +     ++
Sbjct: 63  LGRVRWTQQ-RHAEAAVLLQQ 82

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 19/132 (14%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
           D    L + R A+R                   R      +   +  +L +GD     + 
Sbjct: 4   DGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMA 45

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346
            +  +     + +A+ R G+          A    ++A    P   GI   L  A +   
Sbjct: 46  VQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

Query: 347 ERREQEKKQYRK 358
            + E     Y +
Sbjct: 106 -QAEAAAAAYTR 116

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    KK    +A+++Y+ A+                      T+  ++    +     G
Sbjct: 81  GKILMKKGQDSLAIQQYQAAV------------------DRDTTRLDMYGQIGSYFYNKG 122

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +   A+   E  +R    + K  +  GQAY    +   A  SF K L+L+PN 
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 21/130 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  +K  +Y  A+  + K                    + +     I+   + C  +L 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLE------------------AKKYNSPYIYNRRAVCYYELA 51

Query: 279 DLKGALLDTEF---AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
               A  D E     +             G+  M       A++ ++ A+  +     + 
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 336 KELAVAKKKI 345
            ++       
Sbjct: 112 GQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 27/156 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEG-IDE-----GKSSSLRKT 262
           G+  Y K ++ +A++   K +R           L   +       +      K   L+  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174

Query: 263 KSQIFTNSSACKLKLGDL-----------KGALLDTEFAMRDGDDNVKALFRQGQAYMAL 311
               +   +                    K   +      +  D+ ++A       Y   
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234

Query: 312 NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
            D   A  +++  L L+P +      L +  +  H 
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI 345
           N    FR        N+   A+E F K    + N   I    AV   ++
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL 50

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
               + +  L   +  +R    N +     G+ Y+  ND   ++ ++ +AL+L   +  +
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 335 KKELAVA 341
              LA  
Sbjct: 81  YAALATV 87

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 26/162 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
           +   P     W          G  +  + DY  +L  YR+AL+             G+++
Sbjct: 37  IRANPQNSEQWAL-------LGEYYLWQNDYSNSLLAYRQALQL-----------RGENA 78

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
            L    + +    +                + A+    + + AL           +   A
Sbjct: 79  ELYAALATVLYYQA----SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA 134

Query: 318 VESFEKALKLEPND---GGIKKELAVAKKKIHERREQEKKQY 356
           +E ++K + L         + + + +AK     R + E   +
Sbjct: 135 IELWQKVMDLNSPRINRTQLVESINMAKLLQ-RRSDLEHHHH 175

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 19/158 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALR--------------YLDICWEKEGIDEGKSSSLRKTKS 264
           G   Y     K+A        +                    EK+  +  K    +  K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 265 QIFTNSSACKL----KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           Q   N     L    +   ++    D        +   +  F  G+ Y++L D+D+A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 321 FEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           F+ A+    ++    +   +    +  + + +  +  +
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLL-GQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +       +A   + +AL                   +R    ++F        + G
Sbjct: 50  GVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAG 91

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +   A    +  +        A   +G A         A +      + +PND      L
Sbjct: 92  NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151

Query: 339 AVAKKKIHERREQE--KKQYRK 358
            +A++K+ E++ +E  K+ + K
Sbjct: 152 YLAEQKLDEKQAKEVLKQHFEK 173

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 19/126 (15%)

Query: 206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ 265
           SW  +     +V           ++ L +  + L                 +     ++Q
Sbjct: 4   SWRKS-----EVLAVPLQPTLQQEVILARMEQILA--------------SRALTDDERAQ 44

Query: 266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL 325
           +          LG    A  D   A+    D  +     G       + DAA E+F+  L
Sbjct: 45  LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104

Query: 326 KLEPND 331
           +L+P  
Sbjct: 105 ELDPTY 110

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            L  +   +  A++      +A    G  Y     +  A+E +  AL+L+P+       L
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A A        E   + Y  
Sbjct: 108 AAALVAA-GDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N   +K     A   Y  ALR                  L  T +    N +  K + G
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR------------------LCPTHADSLNNLANIKREQG 319

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +++ A+     A+    +   A             +  A+  +++A+++ P        +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 339 AVAKKKIHE 347
               K++ +
Sbjct: 380 GNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN + ++   + A+  YR ALR                  L+      + N +A  +  G
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAG 115

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D++GA+     A++   D        G    AL  ++ A   + KA++ +PN 
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 8e-08
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 19/149 (12%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN 269
           +    + +  + H++ +    +      A++                       ++ ++N
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------QNPLLAEAYSN 72

Query: 270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
                 + G L+ A+     A+R   D +        A +A  D++ AV+++  AL+  P
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 330 NDGGIKKELAVAKKKIHERREQEKKQYRK 358
           +   ++ +L    K +  R E+ K  Y K
Sbjct: 133 DLYCVRSDLGNLLKAL-GRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN        + A   Y KA+                    +   +  ++N        G
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE------------------TQPNFAVAWSNLGCVFNAQG 183

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           ++  A+   E A+    + + A    G         D AV ++ +AL L PN   +   L
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A    +     +     YR+
Sbjct: 244 ACVYYEQ-GLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN   + + +  A+  Y +AL                  SL    + +  N +    + G
Sbjct: 210 GNVLKEARIFDRAVAAYLRAL------------------SLSPNHAVVHGNLACVYYEQG 251

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            +  A+     A+        A      A      V  A + +  AL+L P        L
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A  K++     E+  + YRK
Sbjct: 312 ANIKREQ-GNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              +Y++    +A+  YR+A+                   L+      + N +    + G
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAI------------------ELQPHFPDAYCNLANALKEKG 285

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            +  A      A+R    +  +L           +++ AV  + KAL++ P        L
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 339 AVAKKKIHERREQEKKQYRK 358
           A   ++   + ++    Y++
Sbjct: 346 ASVLQQ-QGKLQEALMHYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   D + A++ Y  AL+                         + ++       LG
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ------------------YNPDLYCVRSDLGNLLKALG 149

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
            L+ A      A+    +   A    G  + A  ++  A+  FEKA+ L+PN       L
Sbjct: 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209

Query: 339 AVAKKKIHERREQEKKQYRK 358
               K+     ++    Y +
Sbjct: 210 GNVLKEA-RIFDRAVAAYLR 228

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 17/144 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+        +E  D           +      +     L 
Sbjct: 18  AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH------AGFDAFCHAGLAEALAGLR 71

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 72  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131

Query: 328 EPNDGGIKKELAVAKKKIHERREQ 351
                G         +   +R  Q
Sbjct: 132 IEERKGETPGKERMMEVAIDRIAQ 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 209 MNAVDSIKVF--GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
           M+ V++I ++  G     K+D+K AL  +                            S+I
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRI 39

Query: 267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK 326
             N       L ++  A      ++        A F++G  Y      D A++  ++AL 
Sbjct: 40  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99

Query: 327 -LEPND 331
            L  N 
Sbjct: 100 QLRGNQ 105

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +Y+ + Y +A++  ++AL  L      +    G    L     ++  N +    K  
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA--CEVLYNIAFMYAKKE 135

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP 329
           + K A      A     +               + +D A+E   K    EP
Sbjct: 136 EWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 21/152 (13%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
               + K   + AL   RKA          E I +  +          + N +     +G
Sbjct: 58  AYLKHLKGQNEAALECLRKAE---------ELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 279 DLKGAL--------LDTEFAMRDGDDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLE 328
            L            +  +F+     ++ +    +G   +    N  + A   FEKAL+ +
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 329 PNDGGIKKELAVAKKKIHERREQEK--KQYRK 358
           P +      LA+A  ++      +      R+
Sbjct: 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA-KKKIHERREQEKK 354
                L    + Y   ++ D A+E  +KAL+  PN+  +  ++    + K+ +     + 
Sbjct: 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304

Query: 355 QYR 357
              
Sbjct: 305 GMY 307

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 232 LRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG--DLKGALLDTEF 289
           + +      Y+D       + E  SS  R    ++       +LK G    + A +  E 
Sbjct: 107 MGRLSDVQIYVDKVKH---VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEK 163

Query: 290 AMRDGDDNVKALFRQGQAYMALND---VDAAVESFEKALKLEPNDGGIKKELAVAKKKIH 346
           A+     N +       A   L++      A++   +A++L P++  +K  LA+   K+ 
Sbjct: 164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223

Query: 347 ERREQE---KKQYRK 358
           E  E+E   +K   +
Sbjct: 224 EEGEEEGEGEKLVEE 238

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----------YLDICWEKEGIDEGKSSSLRKTKSQIFT 268
              + +K +   A+   +KAL            +  C+  +                   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE---------- 303

Query: 269 NSSACKLKLGDLKG-ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           N    K KL +L G A+   + A    D+  +        +   +  + A   F+K    
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 328 EPND 331
           E   
Sbjct: 364 ELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 18/127 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGI---------DEGKS-----SSLRKTKS 264
            + H     Y+ A   ++K          K+ +          + K          +   
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG-V 399

Query: 265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA 324
           +I   S   +     L+      +  +     + +AL            +  A E  E+ 
Sbjct: 400 KINQKSREKEKMKDKLQKIA---KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

Query: 325 LKLEPND 331
           L+     
Sbjct: 457 LESGSLI 463

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LK  +   AL   E  +    D V   +  G+ Y  L+  D A++++ + +++   +G  
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 335 K--KELAVAKKKI 345
           K   EL  AK K 
Sbjct: 78  KDLSELQDAKLKA 90

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
           ++    +   Q ++  ++   A+  FE+ ++ +P+  G    L    +++ +R +     
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDT 63

Query: 356 YRK 358
           Y +
Sbjct: 64  YAQ 66

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +  K+ YK A   + KALR                         +F       +KL 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLE 139

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K AL   + A+   +++ +A F+ G        +D A+  F    + +P  
Sbjct: 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G    K +  K+AL   ++A+                   L +  ++       C    G
Sbjct: 132 GTVLVKLEQPKLALPYLQRAV------------------ELNENDTEARFQFGMCLANEG 173

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            L  AL            +  A +  G  Y    + + A+E  +KA+ ++P+ 
Sbjct: 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            N      + + AL  Y KAL                   L  + +  +  +    +   
Sbjct: 64  ANLLSSVNELERALAFYDKAL------------------ELDSSAATAYYGAGNVYVVKE 105

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             K A    E A+R G +N    +  G   + L     A+   ++A++L  ND
Sbjct: 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 25/127 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                +  DY+ A   + KA+                     K  +  + N +     + 
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAI------------------EENKEDAIPYINFANLLSSVN 71

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------- 331
           +L+ AL   + A+        A +  G  Y+       A + FEKAL+    +       
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131

Query: 332 GGIKKEL 338
           G +  +L
Sbjct: 132 GTVLVKL 138

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK 335
           + GD + A      A+ +  ++            ++N+++ A+  ++KAL+L+ +     
Sbjct: 35  EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94

Query: 336 KELAVAKKKIHERREQEKKQYRK 358
                      E  ++ K  + K
Sbjct: 95  YGAGNVYVVK-EMYKEAKDMFEK 116

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 16/114 (14%)

Query: 218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL 277
           +G   Y+++ Y+ A ++  +A +                 +L   +S++F N     L++
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQ----------------DTLYPERSRVFENLGLVSLQM 154

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                A    E ++R   +                +   A + ++   +    +
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           K+   R      +       L+ G+ + A +    A+     +  A       +    + 
Sbjct: 28  KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87

Query: 315 DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             A E + KAL  +  +  +         +  +R E+  ++  +
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQ-KRYEEAYQRLLE 130

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 21/142 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                 + + K+A  +YRKAL                  +     +++  N      +  
Sbjct: 78  AVVFQTEMEPKLADEEYRKAL------------------ASDSRNARVLNNYGGFLYEQK 119

Query: 279 DLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
             + A      A +D    +  +     G   + +     A E FEK+L+L  N   +  
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179

Query: 337 ELAVAKKKIHERREQEKKQYRK 358
           E+A    K        ++ Y  
Sbjct: 180 EMADLLYK-EREYVPARQYYDL 200

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 26/164 (15%)

Query: 210 NAVDSIKVFGNEHYKKQDYKMALRK-------YRKALRYLDICWEKEGIDEGKSSSLRKT 262
             VD +  F + +++    + A RK         K L+ ++           +     + 
Sbjct: 52  GLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQME-----------EVLGSAQV 100

Query: 263 KSQIFTNSSACKLKLGD-LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF 321
           ++Q             D    A +    A++   + V+A  + G+ Y    DV +A   F
Sbjct: 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

Query: 322 EKALKLEPND------GGIKKELAVAKKKIHERREQE-KKQYRK 358
             AL    N         + ++L       H R   +  +Q + 
Sbjct: 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 39/249 (15%), Positives = 72/249 (28%), Gaps = 70/249 (28%)

Query: 140 VIKGMG----------VVRS--IEHVMTGDNDCPIADVTITDCGEIPEGADDGISNFFND 187
           +I G+           V  S  ++  M    D  I  + + +C   PE   + +      
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKM----DFKIFWLNLKNCNS-PETVLEMLQKLLYQ 208

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
            D  P+W +  D + N           IK+  +    +    +  + Y   L  L     
Sbjct: 209 ID--PNWTSRSDHSSN-----------IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 248 KEGID--EGKSSSLRKTKSQIFTNS----SACKLKLGDLKGALLDTE----FA----MRD 293
            +  +        L  T+ +  T+     +   + L      L   E           R 
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 294 GD-------------DNVKALFRQGQA------YMALNDVDAAVESFEKALKLEPNDGGI 334
            D               +    R G A      ++  + +   +ES      LEP +   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAE--Y 371

Query: 335 KK---ELAV 340
           +K    L+V
Sbjct: 372 RKMFDRLSV 380

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 37/102 (36%)

Query: 257 SSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDA 316
           +      S I T  +   ++  D + A    E A++    N  A   + + Y  L   D 
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 317 AVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
           A ESF +AL ++P+   I             R  +    + K
Sbjct: 61  AQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 22/160 (13%), Positives = 36/160 (22%), Gaps = 22/160 (13%)

Query: 218 FGNEHYKKQDYKMALRKYRKALR----YLDI--------CWEKEGIDEGKSS-------S 258
               +   +    A   +R+AL       +I        C       E  +         
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP 107

Query: 259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAV 318
              T      N   C  K G    A    + ++        A     +  M    +  A 
Sbjct: 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD 167

Query: 319 ESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             F+K              L     KI +     +  Y  
Sbjct: 168 YYFKKYQSRVEVLQADDLLLGW---KIAKALGNAQAAYEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 20/159 (12%)

Query: 219 GNEHYKKQDYKMALRKYRKALRY----------LDICWEKEG-IDEGKSS-----SLRKT 262
             E+ + QDY+ A      AL+               ++     D+ + S     S++  
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 263 KSQIFTN-SSACKLKLGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMALNDVDAAVE 319
            ++I  N       +L     ++   + A+ D        A   +G           A  
Sbjct: 75  SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
             +++L  +P      KELA  K     +       ++K
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKML-AGQLGDADYYFKK 172

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 202 PNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR----YLDICWEKEGIDEGKSS 257
           P +++               H  + +   AL   R  L     Y  +             
Sbjct: 86  PKDIAVHAA-------LAVSHTNEHNANAALASLRAWLLSQPQYEQLG-------SVNLQ 131

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
           +          +         + +        A+    ++ +     G  Y   N+ D+A
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191

Query: 318 VESFEKALKLEPND 331
             +  +A++L P+D
Sbjct: 192 AANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LKL +L  A L  E   +   +  +A    G           A+ +   A  L+P D  +
Sbjct: 32  LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 91

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+               R 
Sbjct: 92  HAALAVSHTNE-HNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           G +     D  F   +     +    +G + + L ++  A  +FE   +  P  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER 54

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           L+ GDL  A+L  E A++    +++A    G           A+ +  + L+L+P++   
Sbjct: 75  LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 134

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+       + Q  +  R 
Sbjct: 135 LMALAVSFTNE-SLQRQACEILRD 157

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 277 LGDLKGALLDTEFAMR---DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG 333
           LG    A+   E A+     G D  +     G  +  L +   A       +K  PN   
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 334 IKKELAVAKKKIHERRE 350
           ++   A+    +    +
Sbjct: 63  LRVFYAMVLYNLGRYEQ 79

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD 286
               A+  Y KA+       +      G  S+ R                LG+ + A   
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT---------------LGEYRKAEAV 49

Query: 287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK 336
               ++   ++             L   +  VE   K +    +D  I+ 
Sbjct: 50  LANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           LK GDL   +L  E A+     + +A    G       +  AA+ + ++ L+L+PN+   
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135

Query: 335 KKELAVAKKKIHERREQEKKQYRK 358
              LAV+       ++   +  + 
Sbjct: 136 LMALAVSYTNT-SHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 15/141 (10%), Positives = 43/141 (30%), Gaps = 28/141 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALR----YLD------ICWEKEGIDEGKSSSLRKTKS---- 264
           G    + ++ + A+   ++ L      L       + +      +    +L+        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 265 --QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ------------GQAYMA 310
              +  N          +  + +D+       +  ++A  +             G  +  
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225

Query: 311 LNDVDAAVESFEKALKLEPND 331
             + + A+++F  AL + P D
Sbjct: 226 SGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G +  K+ D  + +     A+                        ++ +      + +  
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL------------------QDPGDAEAWQFLGITQAENE 113

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           + + A++  +  +    +N+KAL     +Y   +    A E+ +  +K  P 
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 8/54 (14%), Positives = 18/54 (33%)

Query: 278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             +  +     F   +   +    F +G   +   D+   +   E A+  +P D
Sbjct: 45  VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)

Query: 222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK 281
             K     +A ++ +K              DE        T +Q+ T   +       L+
Sbjct: 140 LLKLDRLDLARKELKKMQD----------QDE------DATLTQLATAWVSLAAGGEKLQ 183

Query: 282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA 341
            A    +         +  L  Q   +MA    +AA    ++AL  +         L V 
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243

Query: 342 KKKIHERREQEKKQYRKMFQ 361
            + +  +  +   +Y    +
Sbjct: 244 SQHL-GKPPEVTNRYLSQLK 262

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 275 LKLGDLKGALLDTEFAMR-DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           +  GD++ AL   E  ++ +     +A +  G AY  L D   A+ +++ A++L P+ 
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 13/116 (11%), Positives = 31/116 (26%), Gaps = 18/116 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
             +  +  D   A+  Y++A    +        +E +     +   +     S   ++  
Sbjct: 122 AGKLMEPLDLSKAVHLYQQAAAVFE--------NEERLRQAAELIGKA----SRLLVRQQ 169

Query: 279 DLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
               A             M +     K    Q    +   D  AA +   ++  + 
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 18/125 (14%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           +  +    +F       + Y+ A+  ++KA        E E   +    +L         
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA----EAEKQPQLMGRTLY-------- 228

Query: 269 NSSACKLKLGDLKGAL------LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
           N   CK      + A+      +             +A F   Q +  L  +D A E   
Sbjct: 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288

Query: 323 KALKL 327
           K +  
Sbjct: 289 KGMAY 293

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  H K   Y  A+    +                            +  +     +K G
Sbjct: 15  GISHAKAGRYSQAVMLLEQVY------------------DADAFDVDVALHLGIAYVKTG 56

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +       E ++ D  DNVK     G  Y+ +   D AV    K  +  P +
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + K            ++L                  +      ++ T      +++ 
Sbjct: 49  GIAYVKTGAVDRGTELLERSL------------------ADAPDNVKVATVLGLTYVQVQ 90

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+            N    FR G A   L   D A++SF+ AL L PN+
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 18/113 (15%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  + + Q Y +A+    K                            +          LG
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVA------------------EANPINFNVRFRLGVALDNLG 124

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
               A+   + A+    +  K       +Y  +   + A+  F+KA +L+   
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            LG+   A    + A+   +D  +      + Y+++  +D A+  + KAL+  P D
Sbjct: 130 LLGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              +   R G    AL   DAA+  FE+ALK  P D
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD 38

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
              +   + Y  AL     AL            D   + SL         N +    + G
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELA----MDIQNDRFIAISL--------LNIANSYDRSG 236

Query: 279 DLKGALLDTEFAMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
           D + A+   + A +       D   K LF              A +  E+ L  
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
           D N +  + +G       +   +++ FEKA++L+P +
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE 39

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 9/59 (15%), Positives = 25/59 (42%)

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +   G+   ++   E A++   +  K    +G+A   L   + AV+ +   + +  ++
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 37.4 bits (88), Expect = 9e-04
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 20/115 (17%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G   Y   +Y  ++  + KA+                   L   +S+ +         L 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAI------------------QLDPEESKYWLMKGKALYNLE 54

Query: 279 DLKGALLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
             + A+    + +   +D  N      +  A   +   +   E  E   KLE + 
Sbjct: 55  RYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 14/118 (11%), Positives = 31/118 (26%), Gaps = 23/118 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +     +  A   ++          +K G    +  +L              +   G
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQA-QKSGDHTAEHRALH--------QVGMVERMAG 80

Query: 279 DLKGAL------LDTEFAMRDGDDNVK---ALFRQGQAYMALNDVDAAVESFEKALKL 327
           +   A          E      +D +      +      +   D+  A + +EK+L  
Sbjct: 81  NWDAARRCFLEER--ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 42  GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 83

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 84  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           GN +YK+ DY  A+  Y+KAL                   L    ++ + N      K G
Sbjct: 8   GNAYYKQGDYDEAIEYYQKAL------------------ELDPRSAEAWYNLGNAYYKQG 49

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN 330
           D   A+   + A+     + +A +  G AY    D D A+E ++KAL+L+P 
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.82
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.6
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.56
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.55
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.51
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.45
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.38
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.3
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.3
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.28
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.2
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.16
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.13
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.1
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.08
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.08
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.06
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.01
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.99
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.98
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.98
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.97
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.97
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.92
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.9
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.89
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.87
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.87
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.8
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.78
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.69
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.63
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.63
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.62
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.37
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.2
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.19
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.17
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.11
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.08
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.03
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.35
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.32
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.17
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.97
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.96
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.73
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.73
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.59
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.68
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.35
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.28
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.14
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.14
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.35
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.13
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.96
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.07
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.69
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	91.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.11
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.09
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.63
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	90.04
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.01
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.54
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.13
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	88.58
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.35
3kop_A	188	Uncharacterized protein; protein with A cyclophili	87.93
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	87.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.52
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.7
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	85.05
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.24
2wb7_A	526	PT26-6P; extra chromosomal elements, unknown funct	83.2
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.68
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.3
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.4
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.86
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.45

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=7.4e-76  Score=556.76  Aligned_cols=356  Identities=49%  Similarity=0.814  Sum_probs=326.2

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+|++.|+|+||||.+.||+||+||+.||++.+|+|...|+++||+||.||||||||||||||++.++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998888766677889999999999999999999999889999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.||||.+|+||++.++|+++|+|||||.||||+||||||++.+.|+||++|+|||+|++|++++++|+.++++. +.|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 8899


Q ss_pred             cceEeccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhh
Q 018098          163 ADVTITDCGEIPEGADDGISNFFNDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYL  242 (361)
Q Consensus       163 ~~v~I~~~~~l~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~  242 (361)
                      .+|.|.+|+++.....+.+...+..++.|++++.++.....+.++....+..++.+|+.+++.|+|++|+.+|++|+++.
T Consensus       174 ~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~  253 (370)
T 1ihg_A          174 KLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV  253 (370)
T ss_dssp             SCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999887777776666789999999999977777889999999999999999999999999999999999966


Q ss_pred             ccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHH
Q 018098          243 DICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~  322 (361)
                      +...  .....+....+++....+|.|+|.||.++++|++|+.+|++||+++|+++++++++|.+|..+|++++|+.+|+
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          254 EGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             HHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCc--cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            5421  11112223346888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018098          323 KALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       323 ~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      +|++++|++..++..++.+...+++.++++++.|++||+
T Consensus       332 ~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          332 KAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999995

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=5.1e-55  Score=366.74  Aligned_cols=171  Identities=58%  Similarity=0.993  Sum_probs=163.7

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+||||.+.||+||+||++||++.++.+...|+++||+|+.||||+|+|||||||++.++|+|
T Consensus         6 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   85 (177)
T 1a58_A            6 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   85 (177)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSC
T ss_pred             CcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCC
Confidence            89999999999999999999999999999999999999988776654567779999999999999999999998889999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      ++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|.
T Consensus        86 g~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~  165 (177)
T 1a58_A           86 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  165 (177)
T ss_dssp             CCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEecccccc
Q 018098          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~l  173 (361)
                      .+|.|.+|+++
T Consensus       166 ~~v~I~~~G~l  176 (177)
T 1a58_A          166 ADVVILNCGEL  176 (177)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEEeEEE
Confidence            99999999976

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=4.6e-55  Score=365.66  Aligned_cols=172  Identities=60%  Similarity=1.073  Sum_probs=163.5

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+|||||+|+++++|+|+||||.+.||+||+||++||++.+|++. .++++||+|+.||||+|+|||||||++.++|
T Consensus         1 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (173)
T 2igv_A            1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGK-SGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCc-cCccceECCCEEEEEECCCEEEcCCCCCCCC
Confidence            899999999999999999999999999999999999999998767653 4778899999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++|+||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|+++++.. +.
T Consensus        80 ~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~-~~  158 (173)
T 2igv_A           80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998854 89


Q ss_pred             cccceEeccccccC
Q 018098          161 PIADVTITDCGEIP  174 (361)
Q Consensus       161 P~~~v~I~~~~~l~  174 (361)
                      |..+|.|.+|+++.
T Consensus       159 P~~~v~I~~~g~l~  172 (173)
T 2igv_A          159 PVKDCMIADCGQLK  172 (173)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCEEEEEeEEEc
Confidence            99999999999874

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=7.2e-55  Score=366.07  Aligned_cols=172  Identities=60%  Similarity=1.025  Sum_probs=164.9

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||.+.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|+
T Consensus         8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   87 (179)
T 2wfi_A            8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGR   87 (179)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCC
Confidence            39999999999999999999999999999999999999999888776667788999999999999999999999888999


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|+++|+|||||.+|||++|||||++.+.|+||++|+|||+|++|||+|++|++++++..+.|
T Consensus        88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P  167 (179)
T 2wfi_A           88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP  167 (179)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred             CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.+|+++
T Consensus       168 ~~~v~I~~~G~l  179 (179)
T 2wfi_A          168 FAEVRILSCGEL  179 (179)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999874

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-54  Score=367.20  Aligned_cols=174  Identities=56%  Similarity=0.941  Sum_probs=165.6

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      +.||+|||||+|+++++|+|+||||.+.||+||+||++||++.++.+...++.+||+|+.||||+|+|||||||++.++|
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G   96 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNG   96 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCC
Confidence            45899999999999999999999999999999999999999988877666777899999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++||||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus        97 ~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~  176 (192)
T 2he9_A           97 KGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASR  176 (192)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             cccceEeccccccC
Q 018098          161 PIADVTITDCGEIP  174 (361)
Q Consensus       161 P~~~v~I~~~~~l~  174 (361)
                      |..+|+|.+|+++.
T Consensus       177 P~~~v~I~~~g~l~  190 (192)
T 2he9_A          177 PYADVRVIDCGVLA  190 (192)
T ss_dssp             BSSCEEEEEEEECC
T ss_pred             CcCCeEEEEeEEEc
Confidence            99999999999874

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.5e-53  Score=359.01  Aligned_cols=170  Identities=60%  Similarity=0.958  Sum_probs=159.6

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      +.||+|||||+|+++++|+|+||||.+.||+||+||++||++.+|++. .+++++|+|+.||||+|+|||||||++.++|
T Consensus        17 ~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~-~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G   95 (186)
T 2poy_A           17 QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQ-SGKPLCYTGSFFHRIIPQFMIQGGDFTRGDG   95 (186)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCT-TSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccc-cCccceECCCEEEEEeCCCEEEeCCCCCCCC
Confidence            358999999999999999999999999999999999999998777754 4788889999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++|+||.+|+||++.++|.++|+|||||.||||++|||||++.+.|+||++|+|||+|++|||+|++|+++++. ++.
T Consensus        96 ~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~~~  174 (186)
T 2poy_A           96 TGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGK  174 (186)
T ss_dssp             SCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSC
T ss_pred             CCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985 489


Q ss_pred             cccceEeccccc
Q 018098          161 PIADVTITDCGE  172 (361)
Q Consensus       161 P~~~v~I~~~~~  172 (361)
                      |..+|+|.+|++
T Consensus       175 P~~~v~I~~cG~  186 (186)
T 2poy_A          175 PTKSVCITASGV  186 (186)
T ss_dssp             CSSCEEEEEEEC
T ss_pred             CCCCEEEEeCCC
Confidence            999999999974

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=3.7e-53  Score=351.38  Aligned_cols=163  Identities=58%  Similarity=0.961  Sum_probs=154.8

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |+||+|||||+|+++++|+|+||||.+.||+||+||++||++.++         | |+|+.||||+|+|||||||++.++
T Consensus         1 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~   71 (165)
T 2z6w_A            1 MGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG---------FGYKGSTFHRVIPSFMCQAGDFTNHN   71 (165)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC---------ccCcCCEEEEEECCCEEEeCCccCCC
Confidence            889999999999999999999999999999999999999996532         6 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCC
Q 018098           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|+.|+||.+|+||++.++|.++|+|||||.+|||++|||||++.+.|+||++|+|||+|++||++|++|+++++ .++
T Consensus        72 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~  150 (165)
T 2z6w_A           72 GTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSG  150 (165)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTS
T ss_pred             CCCCCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986 458


Q ss_pred             ccccceEecccccc
Q 018098          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~l  173 (361)
                      .|..+|.|.+|+++
T Consensus       151 ~P~~~v~I~~~g~l  164 (165)
T 2z6w_A          151 RTSKKIVITDCGQL  164 (165)
T ss_dssp             CCSSCEEEEEEEEC
T ss_pred             CCCCcEEEEEeEEE
Confidence            99999999999986

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=2.4e-53  Score=354.19  Aligned_cols=169  Identities=59%  Similarity=0.992  Sum_probs=158.1

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||.+.||+||+||++||++. +++. .+++++|+|+.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~-~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   79 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGS-RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECT-TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCc-cCccceECCCEEEEEECCCEEEcCCccCCCCC
Confidence            489999999999999999999999999999999999999853 3332 35667799999999999999999999888999


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|+++++ .++.|
T Consensus        80 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P  158 (170)
T 1qng_A           80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCC
T ss_pred             CCccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 45899


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.+|+++
T Consensus       159 ~~~v~I~~cG~l  170 (170)
T 1qng_A          159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeceeC
Confidence            999999999874

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.1e-52  Score=350.06  Aligned_cols=163  Identities=60%  Similarity=0.992  Sum_probs=155.0

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |.||+|||||+|+++++|+|+||||.+.||+||+||++||++.+|         | |+|+.||||+|+|||||||++.++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG---------FGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC---------ceECCCEEEEEECCCEEEcCCccCCC
Confidence            569999999999999999999999999999999999999997533         5 999999999999999999998889


Q ss_pred             CCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCC
Q 018098           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|+++|+||||+.||||++|||||++.+.|+||++|+|||+|++||++|++|+++++.. +
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~-~  157 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-G  157 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTT-C
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998865 8


Q ss_pred             ccccceEecccccc
Q 018098          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~l  173 (361)
                      .|..+|.|.+|+++
T Consensus       158 ~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          158 KVKEPVIISRCGEL  171 (172)
T ss_dssp             CCSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEeEeE
Confidence            99999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=2.2e-52  Score=349.04  Aligned_cols=164  Identities=56%  Similarity=0.934  Sum_probs=155.0

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+|||||+|+++++|+|+||||.+.||+||+||++||++.+|+        +|+|+.||||+|+|||||||++.++|
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   80 (173)
T 2r99_A            9 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHRIIPQFMCQGGDFTNHNG   80 (173)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCc--------eecCCEEEEeeCCCEEEeCCcCCCCC
Confidence            5699999999999999999999999999999999999999865332        39999999999999999999998899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|+.|+||..|+||++.++|+++|+|||||.|||+++|||||++.+.|+||++|+|||+|++||++|++|++++++. +.
T Consensus        81 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-~~  159 (173)
T 2r99_A           81 TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GK  159 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             CCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998865 79


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|.|.+|+++
T Consensus       160 P~~~v~I~~cG~l  172 (173)
T 2r99_A          160 PKQKVIIADCGEY  172 (173)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CCCCeEEEEeeeE
Confidence            9999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=8.6e-53  Score=352.81  Aligned_cols=169  Identities=57%  Similarity=0.967  Sum_probs=159.8

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+++++++|+|+||||.+.||+||+||++||+++.+.   .|++++|+|+.||||+|+|||||||++.++|+
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~---~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC---cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            389999999999999999999999999999999999999987543   24556799999999999999999999888999


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |++|+||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++.++.|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.+|+++
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999874

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.2e-52  Score=349.21  Aligned_cols=163  Identities=56%  Similarity=0.899  Sum_probs=155.4

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      |.+|+|||||+|+++++|+|+||||.+.||+||+||++||++.+|         | |+|+.||||+|+|||||||+..++
T Consensus         9 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG---------FGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEECCCEEecCCccCCC
Confidence            579999999999999999999999999999999999999976533         6 999999999999999999988889


Q ss_pred             CCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCC
Q 018098           80 GTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDND  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~  159 (361)
                      |+|++|+||.+|+||++.++|. +|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++.++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999998878


Q ss_pred             ccccceEecccccc
Q 018098          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~l  173 (361)
                      .|..+|+|.+|+++
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999874

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3.4e-52  Score=345.92  Aligned_cols=162  Identities=57%  Similarity=0.943  Sum_probs=155.4

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      +||+|||||+|+++++|+|+||||.+.||+||+||++||+++++         | |+|+.||||+|+|||||||++.++|
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~~g   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG---------FGYKDSIFHRVIPQFMLQGGDFTRHNG   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC---------CcccCCEEEEEECCCeEEeCCCCCCCC
Confidence            69999999999999999999999999999999999999996543         5 9999999999999999999888899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|++|+||.+|++|++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|++++++. +.
T Consensus        72 ~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~-~~  150 (164)
T 3pmp_A           72 TGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSAS-GK  150 (164)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             CCCcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999874 89


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|+|.+|+++
T Consensus       151 P~~~v~I~~cg~l  163 (164)
T 3pmp_A          151 TNATIKITDCGTV  163 (164)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             cccCEEEEeCeEE
Confidence            9999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=4.4e-52  Score=359.15  Aligned_cols=169  Identities=49%  Similarity=0.922  Sum_probs=161.1

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||.+.||+||+||++||+++++.+   |+++||+|+.||||+|+|||||||++.++|+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~---g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc---CCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            3899999999999999999999999999999999999999886654   6677999999999999999999999888999


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEE--eChHHHHHHhccCCCCC-
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDN-  158 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~--~g~~vl~~i~~~~~~~~-  158 (361)
                      |++||||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|+  +||++|++|++++++.. 
T Consensus       135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~  214 (229)
T 1z81_A          135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  214 (229)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999  99999999999999886 


Q ss_pred             CccccceEecccccc
Q 018098          159 DCPIADVTITDCGEI  173 (361)
Q Consensus       159 ~~P~~~v~I~~~~~l  173 (361)
                      +.|..+|+|.+|+++
T Consensus       215 ~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          215 YKPKIPINVVECGEL  229 (229)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CCCCCCeEEEeCeeC
Confidence            899999999999874

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.3e-51  Score=347.49  Aligned_cols=164  Identities=59%  Similarity=0.974  Sum_probs=155.5

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |.||+|||||+|+++++|+|+||||.+.||+||+||++||++++|++        |+|+.||||+|+|||||||++.++|
T Consensus        20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~--------Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--------YKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS--------STTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc--------cCCCEEEEccCCcEEEeCCCCCCCC
Confidence            67999999999999999999999999999999999999999874321        9999999999999999999988899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|+.|+||..|++|++.++|+++|+||||+.+||+++|||||++.+.|+||++|+|||+|++|||+|++|+++++.. +.
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~-g~  170 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN-GK  170 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998764 89


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|+|.+|+++
T Consensus       171 P~~~v~I~~cG~l  183 (184)
T 3rdd_A          171 TSKKITIADCGQL  183 (184)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             CcCCeEEEeCeEE
Confidence            9999999999987

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=7.6e-52  Score=349.64  Aligned_cols=163  Identities=59%  Similarity=0.991  Sum_probs=156.0

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      +|+|||||+|+++++|+|+||||.+.||+||+||++||++.+|         | |+|+.||||+|+|||||||+..++|+
T Consensus        15 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   85 (188)
T 3ich_A           15 TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG---------FGYKNSKFHRVIKDFMIQGGDFTRGDGT   85 (188)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS---------CSSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC---------ccccCCEEEEEECCCEEEcCCccCCCCC
Confidence            6899999999999999999999999999999999999986533         6 99999999999999999998778999


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      |+.||||.+|+||++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P  165 (188)
T 3ich_A           86 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKP  165 (188)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             ccceEeccccccC
Q 018098          162 IADVTITDCGEIP  174 (361)
Q Consensus       162 ~~~v~I~~~~~l~  174 (361)
                      ..+|.|.+|+++.
T Consensus       166 ~~~v~I~~~~~l~  178 (188)
T 3ich_A          166 LKDVIIADCGKIE  178 (188)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCEEEEEeEEEe
Confidence            9999999999883

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.8e-51  Score=346.83  Aligned_cols=165  Identities=52%  Similarity=0.850  Sum_probs=156.3

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |+||+|||||+|+++++|+|+||||.+.||+||+||++||++++++        +|+|+.||||+|+|||||||++.++|
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g   96 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE--------GYKGSTFHRIIPGFMVQGGDYTAHNG   96 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS--------SSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC--------cccCCEEEEEeCCCEEEeCCCCCCCC
Confidence            5799999999999999999999999999999999999999976432        29999999999999999999888899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +|+.|+||.+|++|++.++|+++|+||||+.+|++++|||||++.+.|+||++|+|||+|++|||+|++|++++++. +.
T Consensus        97 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~-g~  175 (193)
T 3k2c_A           97 TGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSES-GQ  175 (193)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CC
T ss_pred             cCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCC-Cc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985 78


Q ss_pred             cc--cceEeccccccC
Q 018098          161 PI--ADVTITDCGEIP  174 (361)
Q Consensus       161 P~--~~v~I~~~~~l~  174 (361)
                      |.  .+|+|.+|+++.
T Consensus       176 P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          176 VKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCTTCCEEEEEEEECC
T ss_pred             CccCccEEEEEceEeC
Confidence            88  999999999985

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-51  Score=347.46  Aligned_cols=164  Identities=59%  Similarity=0.991  Sum_probs=157.5

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|||||+|+++++|+|+||||.+.||+||+||++||++++|.        +|+|+.||||+|+|||||||++.++|+|
T Consensus        12 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--------~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   83 (185)
T 4fru_A           12 TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF--------GYKDSKFHRVIKDFMIQGGDFTRGDGTG   83 (185)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC--------eEcCCEEEEeeCCCeEEECCCCCCCCCC
Confidence            68999999999999999999999999999999999999875432        6999999999999999999999899999


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.|+||..|++|++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|++++++.++.|.
T Consensus        84 g~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~  163 (185)
T 4fru_A           84 GKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL  163 (185)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             cceEeccccccC
Q 018098          163 ADVTITDCGEIP  174 (361)
Q Consensus       163 ~~v~I~~~~~l~  174 (361)
                      .+|+|.+|+++.
T Consensus       164 ~~v~I~~~g~l~  175 (185)
T 4fru_A          164 KDVTIADCGKIE  175 (185)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCEEEEEceEEe
Confidence            999999999884

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-50  Score=336.31  Aligned_cols=160  Identities=54%  Similarity=0.925  Sum_probs=121.9

Q ss_pred             eEEEEEEeC--Ceee---eEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCce-eeeeEEEEeecCcEEEeCCCCCC
Q 018098            5 RCFLDISIG--VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLH-YKVIRFHRVIKGFMIQGGDISAG   78 (361)
Q Consensus         5 ~v~~~~~~~--~~~~---G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~-y~~~~~~rv~~~~~iq~G~~~~~   78 (361)
                      +|||||+|+  |++.   |+|+||||.+.||+||+||++||++.+|         + |+|+.||||+|+|||||||+..+
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g---------~~Y~g~~fhRvi~~f~iQgGd~~~~   74 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG---------EGYRESTFHRIIPNFMIQGGDFTRG   74 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT---------TSSTTCBCCEEETTTEEEECC----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC---------cccCCCEEEEEeCCCEEEeCCcCCC
Confidence            899999999  8766   9999999999999999999999997643         4 99999999999999999997778


Q ss_pred             CCCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEe--ChHHHHHHhccCCC
Q 018098           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHVMTG  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~--g~~vl~~i~~~~~~  156 (361)
                      +|+|++|+||.+|+||++.++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|++  ||++|++|++++++
T Consensus        75 ~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~  154 (172)
T 2c3b_A           75 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  154 (172)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999  99999999999998


Q ss_pred             CCC-ccccceEecccccc
Q 018098          157 DND-CPIADVTITDCGEI  173 (361)
Q Consensus       157 ~~~-~P~~~v~I~~~~~l  173 (361)
                      ..+ .|..+|+|.+|+++
T Consensus       155 ~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          155 SGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCccCCCCeEEEeCeeC
Confidence            755 89999999999874

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.1e-49  Score=347.18  Aligned_cols=175  Identities=28%  Similarity=0.514  Sum_probs=153.1

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCC---------CCCCCceeeeeEEEEeecCcEEEe
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP---------NTGVPLHYKVIRFHRVIKGFMIQG   72 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~---------~~~~~~~y~~~~~~rv~~~~~iq~   72 (361)
                      .||+|||||+|+++++|+|+||||.+.||+||+||++||++++.+-.         ..|++..|+|+.||||+|+|||||
T Consensus        13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg   92 (234)
T 2ose_A           13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS   92 (234)
T ss_dssp             SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred             CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence            48999999999999999999999999999999999999997632211         013333399999999999999999


Q ss_pred             CCCCCCCCCCCCccCCCC-----CCCCccccCCCCceEEEeec----CCCCCCCcceEEecCC------CCCCCCCceEE
Q 018098           73 GDISAGDGTGGESIYGLK-----FEDENFELKHERKGMLSMAN----AGPNTNGSQFFITTTR------TSHLDGKHVVF  137 (361)
Q Consensus        73 G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~g~l~~~~----~~~~~~~sqF~I~~~~------~~~ld~~~~vf  137 (361)
                      ||+..++|+|++||||..     |+  ++.++|+++|+|||||    .||||+||||||++.+      .|+||++|+||
T Consensus        93 Gd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVF  170 (234)
T 2ose_A           93 GDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVI  170 (234)
T ss_dssp             CCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEE
T ss_pred             CCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEE
Confidence            998778999999999998     77  5689999999999999    8999999999999999      89999999999


Q ss_pred             eEEEeChHHHHHHhccCCCCCCccccceEeccccccCCCCC
Q 018098          138 GRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGAD  178 (361)
Q Consensus       138 G~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~~l~~~~~  178 (361)
                      |+|++|||+|++|++++++.++.|..+|.|.+|+++..++.
T Consensus       171 G~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~p~~  211 (234)
T 2ose_A          171 GQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLDSSQ  211 (234)
T ss_dssp             EEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECCCHHH
T ss_pred             EEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEecCCcc
Confidence            99999999999999999998899999999999999976543

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=7.8e-48  Score=319.40  Aligned_cols=155  Identities=49%  Similarity=0.816  Sum_probs=146.9

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .++.|.|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+
T Consensus        10 ~~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~   72 (166)
T 2x7k_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (166)
T ss_dssp             CCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEECCTT-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC-----------CCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence            3678899887     899999999999999999999999987           9999999999999999999987 7899


Q ss_pred             CCCccCCCCCCCCc-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        82 ~~~~~~~~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      |+.|+||.+|++|+ ..++|.++|+|||||.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus        73 gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~  152 (166)
T 2x7k_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (166)
T ss_dssp             CCCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSC
T ss_pred             CCCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 48999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|+|.++.++
T Consensus       153 P~~~i~I~~~~i~  165 (166)
T 2x7k_A          153 PVDDVKIIKAYPS  165 (166)
T ss_dssp             BSSCCEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999998765

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=1.5e-47  Score=322.53  Aligned_cols=153  Identities=44%  Similarity=0.726  Sum_probs=144.0

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      +++|+|+||||.+.||+||+||++||+++           ||+|+.||||+|+|||||||++ ++|+|+.|+||.+|++|
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   90 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSASG-----------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDE   90 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            56999999999999999999999999987           9999999999999999999987 78999999999999999


Q ss_pred             c-cccCCCCceEEEeecCC----CCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecc
Q 018098           95 N-FELKHERKGMLSMANAG----PNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITD  169 (361)
Q Consensus        95 ~-~~~~~~~~g~l~~~~~~----~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~  169 (361)
                      + ..++|+++|+||||+.|    |||+||||||++.+.|+||++|+|||+|++||++|++|++++++..+.|..+|.|.+
T Consensus        91 ~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 2poe_A           91 IYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD  170 (185)
T ss_dssp             CCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEE
T ss_pred             ccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            8 68999999999999999    999999999999999999999999999999999999999999988899999999999


Q ss_pred             ccccCCCCCC
Q 018098          170 CGEIPEGADD  179 (361)
Q Consensus       170 ~~~l~~~~~~  179 (361)
                      |.++..++++
T Consensus       171 ~~i~~dPf~d  180 (185)
T 2poe_A          171 IVIHSNPIAD  180 (185)
T ss_dssp             EEEECCC---
T ss_pred             EEEECCCCCC
Confidence            9999766554

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.7e-47  Score=324.00  Aligned_cols=156  Identities=47%  Similarity=0.694  Sum_probs=146.0

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|.|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|||||||||++ ++|+|
T Consensus        38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g  100 (196)
T 2b71_A           38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG  100 (196)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            578888876     899999999999999999999999987           9999999999999999999987 78999


Q ss_pred             CCccCCCCCCCCc-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++|+||.+|++|. ..++|+++|+||||+.||||+||||||++.+.|+||++|+|||+|++||++|++|++++++..+.|
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  180 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  180 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence            9999999999995 578999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEeccccccCC
Q 018098          162 IADVTITDCGEIPE  175 (361)
Q Consensus       162 ~~~v~I~~~~~l~~  175 (361)
                      ..+|.|.+|.++..
T Consensus       181 ~~~i~I~~~~i~~d  194 (196)
T 2b71_A          181 IFDLKILRTSTAVN  194 (196)
T ss_dssp             SSCCEEEEEEC---
T ss_pred             CCCeEEEEEEEecC
Confidence            99999999998754

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.3e-47  Score=317.18  Aligned_cols=152  Identities=47%  Similarity=0.743  Sum_probs=143.9

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||.+.||+||+||++||+++           ||+|+.||||+|||||||||++ ++|+|+.|+||.+|++|
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE   74 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDE   74 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhc-----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccc
Confidence            45899999999999999999999999987           9999999999999999999987 78999999999999999


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC-CccccceEeccccc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                      +. .++|+++|+||||+.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.++.+
T Consensus        75 ~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i  154 (161)
T 2ok3_A           75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEE
T ss_pred             cCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEE
Confidence            86 68999999999999999999999999999999999999999999999999999999999886 89999999999999


Q ss_pred             cCCCCC
Q 018098          173 IPEGAD  178 (361)
Q Consensus       173 l~~~~~  178 (361)
                      +..+++
T Consensus       155 ~~~Pf~  160 (161)
T 2ok3_A          155 HANPFA  160 (161)
T ss_dssp             ECCSCC
T ss_pred             ecCCCC
Confidence            876644

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.6e-47  Score=315.53  Aligned_cols=154  Identities=47%  Similarity=0.692  Sum_probs=144.4

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .+.|.++++     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus         5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   67 (160)
T 2fu0_A            5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTG   67 (160)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC-----------ccCCCEEEEEECCCEEEeCCcC-CCCCC
Confidence            456667665     899999999999999999999999987           9999999999999999999986 68999


Q ss_pred             CCccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++|+||.+|+||+. .++|+++|+||||+.+|||++|||||++.+.|+||++|+|||+|++||+++++|++++++.++.|
T Consensus        68 g~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  147 (160)
T 2fu0_A           68 GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKP  147 (160)
T ss_dssp             CCCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCc
Confidence            99999999999998 69999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.++.+.
T Consensus       148 ~~~v~I~~~~v~  159 (160)
T 2fu0_A          148 LEDIKILNIKIN  159 (160)
T ss_dssp             SSCCBEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999988654

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=4.4e-47  Score=321.33  Aligned_cols=151  Identities=44%  Similarity=0.718  Sum_probs=142.8

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|+.|+||.+|++|
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE   93 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   93 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccc
Confidence            44899999999999999999999999987           9999999999999999999987 78999999999999999


Q ss_pred             c-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC-CccccceEeccccc
Q 018098           95 N-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-DCPIADVTITDCGE  172 (361)
Q Consensus        95 ~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~-~~P~~~v~I~~~~~  172 (361)
                      . ..++|+++|+|||||.||||+||||||++.+.|+||++|+|||+|++||++|++|++++++.. +.|..+|.|.+|.+
T Consensus        94 ~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v  173 (197)
T 1zkc_A           94 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  173 (197)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEE
Confidence            4 789999999999999999999999999999999999999999999999999999999999886 89999999999999


Q ss_pred             cCCCC
Q 018098          173 IPEGA  177 (361)
Q Consensus       173 l~~~~  177 (361)
                      +..++
T Consensus       174 ~~dPf  178 (197)
T 1zkc_A          174 FVDPY  178 (197)
T ss_dssp             EECTT
T ss_pred             EcCCc
Confidence            86553

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=9.7e-47  Score=320.34  Aligned_cols=161  Identities=48%  Similarity=0.796  Sum_probs=151.0

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .++.|.|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+
T Consensus        10 ~~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~   72 (203)
T 2k7n_A           10 QPPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (203)
T ss_dssp             CCSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT-----------CGGGCEEEEEETTTEEEEECSS-SSSS
T ss_pred             CCCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC-----------ccCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            3678999887     899999999999999999999999987           9999999999999999999987 7899


Q ss_pred             CCCccCCCCCCCCc-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           82 GGESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        82 ~~~~~~~~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      ++.|+||.+|++|+ ..++|.++|+|||||.+||+++|||||++.+.|+||++|+|||+|++||++|++|++++++..+.
T Consensus        73 gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~  152 (203)
T 2k7n_A           73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDR  152 (203)
T ss_dssp             CCCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTE
T ss_pred             CCCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCC
Confidence            99999999999998 48999999999999999999999999999999999999999999999999999999999988789


Q ss_pred             cccceEeccccccCCCCCC
Q 018098          161 PIADVTITDCGEIPEGADD  179 (361)
Q Consensus       161 P~~~v~I~~~~~l~~~~~~  179 (361)
                      |..+|+|.+|.++..+...
T Consensus       153 P~~~V~I~~~~v~~~~~s~  171 (203)
T 2k7n_A          153 PVDDVKIIKAYPSGGGGSG  171 (203)
T ss_dssp             ECCCCBEEEEEECCCCCCC
T ss_pred             cCCCeEEEEEEEEecCCCC
Confidence            9999999999998765443

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=4.4e-47  Score=317.18  Aligned_cols=151  Identities=50%  Similarity=0.717  Sum_probs=140.5

Q ss_pred             EEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCC
Q 018098           10 ISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGL   89 (361)
Q Consensus        10 ~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~   89 (361)
                      +.+-.+++|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|+.|+||.
T Consensus        23 ~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~   90 (176)
T 2a2n_A           23 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGG   90 (176)
T ss_dssp             EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSS
T ss_pred             EEEEEecCccEEEEEeCCCChHHHHHHHHHhhcC-----------ccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCC
Confidence            3333466999999999999999999999999987           9999999999999999999986 689999999999


Q ss_pred             CCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCC-CCCccccceEe
Q 018098           90 KFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTG-DNDCPIADVTI  167 (361)
Q Consensus        90 ~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~-~~~~P~~~v~I  167 (361)
                      +|+||+. .++|+++|+||||+.||||++|||||++.+.|+||++|+|||+|++||++|++|++++++ .++.|..+|.|
T Consensus        91 ~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I  170 (176)
T 2a2n_A           91 EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI  170 (176)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBE
T ss_pred             ccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEE
Confidence            9999998 699999999999999999999999999999999999999999999999999999999998 56899999999


Q ss_pred             ccccc
Q 018098          168 TDCGE  172 (361)
Q Consensus       168 ~~~~~  172 (361)
                      .++.+
T Consensus       171 ~~v~v  175 (176)
T 2a2n_A          171 INITV  175 (176)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88753

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.7e-46  Score=320.94  Aligned_cols=161  Identities=34%  Similarity=0.546  Sum_probs=141.5

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeC-----CCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGG-----DISA   77 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G-----~~~~   77 (361)
                      +..|.|+++     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+||||||     |++ 
T Consensus         6 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-   68 (201)
T 3bo7_A            6 KGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK-----------YFDDTIFHRCIRNFMIQGGRAELRQPS-   68 (201)
T ss_dssp             CEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEECCGGGCCC--
T ss_pred             ceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCCEEEEeeCCCEEEcCcccccCCC-
Confidence            345556554     899999999999999999999999987           9999999999999999999     987 


Q ss_pred             CCCCCCCccC-------CCCCCCCc-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHH
Q 018098           78 GDGTGGESIY-------GLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRS  149 (361)
Q Consensus        78 ~~~~~~~~~~-------~~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~  149 (361)
                      ++|+|+.|+|       |.+|++|. ..++|+++|+||||+.||||+||||||++.+.|+||++|+|||+|++||++|++
T Consensus        69 ~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~  148 (201)
T 3bo7_A           69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQ  148 (201)
T ss_dssp             ------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHH
T ss_pred             CCCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHH
Confidence            7899999999       89999994 688999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCCCCccccceEeccccccCCCCCCC
Q 018098          150 IEHVMTGDNDCPIADVTITDCGEIPEGADDG  180 (361)
Q Consensus       150 i~~~~~~~~~~P~~~v~I~~~~~l~~~~~~~  180 (361)
                      |+.++++..+.|..+|.|.+|+++..++++.
T Consensus       149 I~~~~t~~~~~P~~~i~I~~~~v~~dPf~d~  179 (201)
T 3bo7_A          149 WEKLETDKKDKPLKPPKVEEIIVFKNPFEDA  179 (201)
T ss_dssp             HTTCCBCTTSCBSSCCBEEEEEEEECCC---
T ss_pred             HHhCCcCCCCCcCCCeEEEEEEEEcCCccCH
Confidence            9999999889999999999999997776655

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=2.9e-46  Score=315.64  Aligned_cols=163  Identities=44%  Similarity=0.699  Sum_probs=144.8

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCC-CCC---CCceeeeeEEEEeecCcEEEeCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP-NTG---VPLHYKVIRFHRVIKGFMIQGGDIS   76 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~-~~~---~~~~y~~~~~~rv~~~~~iq~G~~~   76 (361)
                      |.++.|.|+++     +|+|+||||.+.||+||+||++||++.+++.. ..|   +..||+|+.||||+|+|||||||++
T Consensus        21 ~~~~~v~l~t~-----~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           21 LATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CCSEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred             CCCeEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence            34566777655     89999999999999999999999998877532 112   2359999999999999999999975


Q ss_pred             CCCCCCCCccCCCCCCCC-ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEe--ChHHHHHHhcc
Q 018098           77 AGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIK--GMGVVRSIEHV  153 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~e-~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~--g~~vl~~i~~~  153 (361)
                       ++|+|+   ||.+|+|| ++.++|+++|+|||||.||||++|||||++.+.|+||++|+|||+|++  ||++|++|+++
T Consensus        96 -g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~  171 (191)
T 1w74_A           96 -GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKT  171 (191)
T ss_dssp             -SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTS
T ss_pred             -CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcC
Confidence             677777   58899999 468999999999999999999999999999999999999999999999  99999999999


Q ss_pred             CCCCCCccccceEeccccc
Q 018098          154 MTGDNDCPIADVTITDCGE  172 (361)
Q Consensus       154 ~~~~~~~P~~~v~I~~~~~  172 (361)
                      +++..+.|..+|.|.+|.+
T Consensus       172 ~t~~~~~P~~~v~I~~~~i  190 (191)
T 1w74_A          172 ATDGNDRPTDPVVIESITI  190 (191)
T ss_dssp             CBCTTSCBSSCCEEEEEEE
T ss_pred             CcCCCCCcCCCeEEEEEEE
Confidence            9988899999999999875

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=4.4e-46  Score=313.27  Aligned_cols=158  Identities=40%  Similarity=0.720  Sum_probs=147.2

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        24 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~g   86 (185)
T 2hq6_A           24 NGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA-----------YYDNTIFHRVVPGFIVQGGDPT-GTGSG   86 (185)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            678999887     799999999999999999999999987           9999999999999999999987 78999


Q ss_pred             CCccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHH--HHHhccCCCCCC
Q 018098           83 GESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVV--RSIEHVMTGDND  159 (361)
Q Consensus        83 ~~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl--~~i~~~~~~~~~  159 (361)
                      +.|+||.+|++|+. .++|+++|+|||||.+||+++|||||++.+.|+||++|+|||+|+ |++++  ++|+.++++.++
T Consensus        87 g~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~  165 (185)
T 2hq6_A           87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDE  165 (185)
T ss_dssp             CCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTS
T ss_pred             CCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCC
Confidence            99999999999986 688999999999999999999999999999999999999999999 88774  678888888889


Q ss_pred             ccccceEeccccccCCCCC
Q 018098          160 CPIADVTITDCGEIPEGAD  178 (361)
Q Consensus       160 ~P~~~v~I~~~~~l~~~~~  178 (361)
                      .|..+|.|.+|+++..+++
T Consensus       166 ~P~~~v~I~~~~v~~~Pf~  184 (185)
T 2hq6_A          166 RPHNPHKIKSCEVLFNPFD  184 (185)
T ss_dssp             CBSSCCEEEEEEEEECTTC
T ss_pred             CCCCCeEEEEEEEeCCCCC
Confidence            9999999999999876654

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.2e-44  Score=301.08  Aligned_cols=153  Identities=31%  Similarity=0.495  Sum_probs=137.6

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++...+ 
T Consensus         3 ~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~~-   65 (166)
T 1v9t_A            3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQ-   65 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCC-
T ss_pred             CCeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC-----------CCCCCEEEEEECCcEEEcCCcCcCCC-
Confidence            4899999976     899999999999999999999999887           99999999999999999999875332 


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecC-CCCCCCcceEEecCCCCCCCCC-----ceEEeEEEeChHHHHHHhccCC
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK-----HVVFGRVIKGMGVVRSIEHVMT  155 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~-~~~~~~sqF~I~~~~~~~ld~~-----~~vfG~V~~g~~vl~~i~~~~~  155 (361)
                        .+.+|.+|++|+....|+.+|+||||+. +|||++|||||++.+.|+||++     |+|||+|++||++|++|+++++
T Consensus        66 --~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~  143 (166)
T 1v9t_A           66 --QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             --BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             --CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCC
Confidence              2346888999987766778999999997 5999999999999999999998     9999999999999999999988


Q ss_pred             CC----CCccccceEecccccc
Q 018098          156 GD----NDCPIADVTITDCGEI  173 (361)
Q Consensus       156 ~~----~~~P~~~v~I~~~~~l  173 (361)
                      +.    .+.|..+|.|.++.++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          144 HDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEEC
T ss_pred             CCCCccCCCcCCCeEEEEEEEe
Confidence            75    3679999999998765

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-44  Score=313.92  Aligned_cols=161  Identities=34%  Similarity=0.573  Sum_probs=147.8

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ++.|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++ ++|+|
T Consensus        21 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g-----------~Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           21 RGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG-----------YYVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             BCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT-----------TTTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             CCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC-----------ccCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            568888887     799999999999999999999999987           9999999999999999999997 78999


Q ss_pred             CCccC--CCCCCCCcc-ccCCCCceEEEeecCCC--------------CCCCcceEEecCCCCCCCCCceEEeEEEeChH
Q 018098           83 GESIY--GLKFEDENF-ELKHERKGMLSMANAGP--------------NTNGSQFFITTTRTSHLDGKHVVFGRVIKGMG  145 (361)
Q Consensus        83 ~~~~~--~~~~~~e~~-~~~~~~~g~l~~~~~~~--------------~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~  145 (361)
                      +.|+|  |.+|++|+. .++|+.+|+||||+.++              +++||||||++.+.|+||++|+|||+|+ |++
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  999999986 68899999999999997              6999999999999999999999999999 776


Q ss_pred             H--HHHHhccCCCCCCccccceEeccccccCCCCCCCC
Q 018098          146 V--VRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGI  181 (361)
Q Consensus       146 v--l~~i~~~~~~~~~~P~~~v~I~~~~~l~~~~~~~l  181 (361)
                      +  +++|+.++++.++.|..+|.|.+|.++..++++..
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf~d~~  200 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLV  200 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCCTTCC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCChhhhh
Confidence            6  88999999988899999999999999987766553

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1.2e-43  Score=296.02  Aligned_cols=153  Identities=32%  Similarity=0.479  Sum_probs=136.3

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .+|.|.|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++...+ 
T Consensus         2 p~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~~-   64 (167)
T 3s6m_A            2 PGSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG-----------HYDGTIFHRVINGFMIQGGGFEPGLK-   64 (167)
T ss_dssp             CCCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT-----------TTTTEECCEEETTTEEEESSEETTTE-
T ss_pred             CCcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc-----------ccCCCEeEEecCCcEEEeccccCCCC-
Confidence            3688888776     899999999999999999999999987           99999999999999999999875432 


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeec-CCCCCCCcceEEecCCCCCCCCC--------ceEEeEEEeChHHHHHHhc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMAN-AGPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~-~~~~~~~sqF~I~~~~~~~ld~~--------~~vfG~V~~g~~vl~~i~~  152 (361)
                        .+.++.+|++|.....++.+|+||||| .+|||+||||||++.+.++||++        |+|||+|++||++|++|++
T Consensus        65 --~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~  142 (167)
T 3s6m_A           65 --QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKA  142 (167)
T ss_dssp             --ECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTT
T ss_pred             --CCCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHc
Confidence              345688899997654456899999999 57999999999999999999998        9999999999999999999


Q ss_pred             cCCCC----CCccccceEecccccc
Q 018098          153 VMTGD----NDCPIADVTITDCGEI  173 (361)
Q Consensus       153 ~~~~~----~~~P~~~v~I~~~~~l  173 (361)
                      ++++.    ++.|..+|.|.++.++
T Consensus       143 ~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          143 VKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             SCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             CCcCCCcccCCCcCCCeEEEEEEEC
Confidence            99987    5899999999988653

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=9.8e-44  Score=295.06  Aligned_cols=145  Identities=33%  Similarity=0.546  Sum_probs=130.6

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||.+.||+||+||++||+.+           ||+|+.||||+|+|||||||++.+.   +.+++|.+|++|
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g-----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE   71 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNE   71 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhcC-----------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccc
Confidence            44899999999999999999999999987           9999999999999999999987433   456789999999


Q ss_pred             ccccCCCCceEEEeecC-CCCCCCcceEEecCCCCCCCCC--------ceEEeEEEeChHHHHHHhccCCCC----CCcc
Q 018098           95 NFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDGK--------HVVFGRVIKGMGVVRSIEHVMTGD----NDCP  161 (361)
Q Consensus        95 ~~~~~~~~~g~l~~~~~-~~~~~~sqF~I~~~~~~~ld~~--------~~vfG~V~~g~~vl~~i~~~~~~~----~~~P  161 (361)
                      +....++.+|+||||+. +|||++|||||++.+.|+||++        |+|||+|++||++|++|++++++.    .+.|
T Consensus        72 ~~~~l~~~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P  151 (164)
T 1lop_A           72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             cccccccCccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence            87533447999999975 7999999999999999999998        999999999999999999998875    4789


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.+|.++
T Consensus       152 ~~~v~I~~~~v~  163 (164)
T 1lop_A          152 KEDVIIESVTVS  163 (164)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=6.2e-39  Score=294.02  Aligned_cols=137  Identities=24%  Similarity=0.380  Sum_probs=123.0

Q ss_pred             CCeEEEEEEeCC---eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCC
Q 018098            3 RPRCFLDISIGV---ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGD   79 (361)
Q Consensus         3 ~~~v~~~~~~~~---~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~   79 (361)
                      ++.|.|++++.+   ++.|+|+|+||.+.||+||+||++||+.+           ||+|+.|||| +||||||||++ ++
T Consensus       170 ra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G-----------fYdGt~FHRV-~gFmIQgGDp~-g~  236 (369)
T 3rfy_A          170 RASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH-----------FYDGMEIQRS-DGFVVQTGDPE-GP  236 (369)
T ss_dssp             EEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT-----------TTTTEECEEE-EEEEECCCCCC-CC
T ss_pred             CeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC-----------CcCCCeeeee-CCeeEecCCCC-CC
Confidence            456777777654   36999999999999999999999999987           9999999999 99999999997 56


Q ss_pred             CCC---------------------CCccCCCCCCCCcc-----ccCCCCceEEEeecC--CCCCCCcceEEec-------
Q 018098           80 GTG---------------------GESIYGLKFEDENF-----ELKHERKGMLSMANA--GPNTNGSQFFITT-------  124 (361)
Q Consensus        80 ~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~g~l~~~~~--~~~~~~sqF~I~~-------  124 (361)
                      |+|                     +.++|+.+|++|++     .++|+.+|+|||||.  +|||+||||||++       
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~  316 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP  316 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECS
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCC
Confidence            665                     46789999999865     688999999999998  7999999999999       


Q ss_pred             CCCCCCCCCceEEeEEEeChHHHHHHhc
Q 018098          125 TRTSHLDGKHVVFGRVIKGMGVVRSIEH  152 (361)
Q Consensus       125 ~~~~~ld~~~~vfG~V~~g~~vl~~i~~  152 (361)
                      .+.++||++|+|||+|++||++|++|++
T Consensus       317 ~~~~~LDgkytVFG~VveGmdVVdkI~~  344 (369)
T 3rfy_A          317 SNSNILDGRYAVFGYVTDNEDFLADLKV  344 (369)
T ss_dssp             CCCSSSCSCEEEEEEEEESTTGGGGCCT
T ss_pred             CCCcccCCCeeEEEEEecCHHHHHHHhC
Confidence            4789999999999999999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.92  E-value=1.1e-24  Score=181.01  Aligned_cols=157  Identities=29%  Similarity=0.447  Sum_probs=135.9

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al  284 (361)
                      .++.++.+..++..|+.+++.|+|++|+..|++|++++........+..+.....+|....+|.|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            44566789999999999999999999999999999987665554555555555678999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 018098          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQEKKQYRKMFQ  361 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  361 (361)
                      .+|+++|+++|+++++|+++|.+|..+|++++|+.+|+++++++|+++ .+...+..+...+++.++++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999 88999999999999999999999999995

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=1.9e-21  Score=155.00  Aligned_cols=114  Identities=25%  Similarity=0.446  Sum_probs=110.3

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.++.++++|+.+++.|+|++|+..|+++++                  ++|.+..+|.++|.||.++|++++|+.+|++
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~   72 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------------RDPENAILYSNRAACLTKLMEFQRALDDCDT   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence            4688999999999999999999999999999                  8889999999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +|+++|+++++|+++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus        73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.86  E-value=2e-21  Score=159.38  Aligned_cols=138  Identities=14%  Similarity=0.072  Sum_probs=122.5

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      ....+..+++.|+.+++.|+|++|+.+|++||++.+.....+      .....|.+..+|+|+|.|+.++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~   80 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSA   80 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            355789999999999999999999999999999776522211      11256677789999999999999999999999


Q ss_pred             HHHhhc-------CCCchhhH----hHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRD-------GDDNVKAL----FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       288 ~~al~~-------~p~~~ka~----~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++||++       +|++.++|    |++|.++..+|++++|+.+|+++++++|++..+...+..++..+++..++
T Consensus        81 ~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           81 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999       99999999    99999999999999999999999999999999999999998888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.82  E-value=8.2e-20  Score=177.21  Aligned_cols=158  Identities=24%  Similarity=0.401  Sum_probs=137.1

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +..........+..++.+|+.+++.|+|++|+.+|++|+++.+....   ...+......+....+|+|+|.||+++++|
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  333 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG---LSEKESKASESFLLAAFLNLAMCYLKLREY  333 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS---CCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc---CChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            45567777888999999999999999999999999999996553311   223344456777789999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|++||+++|+++++|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||
T Consensus       334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018098          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       414 ~  414 (457)
T 1kt0_A          414 K  414 (457)
T ss_dssp             -
T ss_pred             h
Confidence            4

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.82  E-value=1.4e-19  Score=154.93  Aligned_cols=165  Identities=25%  Similarity=0.291  Sum_probs=130.2

Q ss_pred             CCCCCCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCcc-chhHHHHHHHHHHHHHHH
Q 018098          194 WPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEG-KSSSLRKTKSQIFTNSSA  272 (361)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~  272 (361)
                      +....+.+..+.++....+..+..+|+.++..|+|++|+..|.+++++.+.....   ... ...........++.++|.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---DDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc---chhhHHHHHHHHHHHHHHHHHH
Confidence            3344444667788889999999999999999999999999999999855421100   000 111122334588999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ||.++|+|++|+.+|++++.++|.++++++++|.++..+|++++|+..|+++++++|++..++..++.+...+++.++++
T Consensus        97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A           97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcC
Q 018098          353 KKQYRKMFQ  361 (361)
Q Consensus       353 k~~~~~~f~  361 (361)
                      ++.|++||+
T Consensus       177 ~~~~~~~f~  185 (198)
T 2fbn_A          177 KLTFGGMFD  185 (198)
T ss_dssp             ---------
T ss_pred             HHHHHHHhc
Confidence            999999985

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.81  E-value=3.6e-19  Score=165.79  Aligned_cols=158  Identities=28%  Similarity=0.404  Sum_probs=141.4

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      +....+.....+..+..+|+.+++.|+|++|+.+|++|+++.+....   ...+......+....+|+|+|.||.++|+|
T Consensus       136 ~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~---~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  212 (336)
T 1p5q_A          136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS---FSNEEAQKAQALRLASHLNLAMCHLKLQAF  212 (336)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc---CChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            34456667778999999999999999999999999999996643211   122334456777889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|++||+++|+++++++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.++++++.|++||
T Consensus       213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018098          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       293 ~  293 (336)
T 1p5q_A          293 E  293 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.78  E-value=8.2e-19  Score=139.80  Aligned_cols=115  Identities=26%  Similarity=0.353  Sum_probs=103.9

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      ..+.|.+++++|+.+++.|+|++|+.+|++|++                  ++|.+..+|.|+|.||.++|+|++|+.+|
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~------------------~~p~~~~~~~nlg~~~~~~~~~~~A~~~~   65 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE------------------LDPSNITFYNNKAAVYFEEKKFAECVQFC   65 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence            345788999999999999999999999999999                  88889999999999999999999999999


Q ss_pred             HHHhhcCCCc-------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          288 EFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       288 ~~al~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +++|+++|++       .++|+++|.++..+|++++|+.+|+++++++| ++++...+.++
T Consensus        66 ~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~l  125 (127)
T 4gcn_A           66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHHHHH
T ss_pred             HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHHHHh
Confidence            9999999876       46899999999999999999999999999998 45555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.78  E-value=3.7e-19  Score=165.80  Aligned_cols=163  Identities=25%  Similarity=0.387  Sum_probs=104.6

Q ss_pred             CCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc
Q 018098          198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL  277 (361)
Q Consensus       198 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l  277 (361)
                      ...+....++.+..+..++.+|+.+++.|+|++|+.+|++|+++.+...... ...............+|+|+|.||+++
T Consensus       165 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~l~~~~~~nla~~~~~~  243 (338)
T 2if4_A          165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LYGKYQDMALAVKNPCHLNIAACLIKL  243 (338)
T ss_dssp             BTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHT-CCHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhh-hcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3446677888999999999999999999999999999999998543211000 000000111222335899999999999


Q ss_pred             CChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018098          278 GDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR  357 (361)
Q Consensus       278 ~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  357 (361)
                      ++|++|+.+|+++|+++|+++++|+++|.+|..+|++++|+.+|+++++++|++..++..+..+........+++++.|+
T Consensus       244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888889999999


Q ss_pred             hhcC
Q 018098          358 KMFQ  361 (361)
Q Consensus       358 ~~f~  361 (361)
                      +||+
T Consensus       324 ~~l~  327 (338)
T 2if4_A          324 GIFK  327 (338)
T ss_dssp             ----
T ss_pred             HhhC
Confidence            9884

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=2.6e-18  Score=135.85  Aligned_cols=117  Identities=20%  Similarity=0.314  Sum_probs=111.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|+.+++.|+|++|+..|+++++                  ++|.+..+|.++|.|+.++|+|++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            578899999999999999999999999999                  78888899999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE------PNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~  345 (361)
                      ++++|+++.+++++|.++..+|++++|+..|+++++++      |++..++..+..+...+
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999      99999999998887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.74  E-value=1.9e-17  Score=137.20  Aligned_cols=123  Identities=28%  Similarity=0.384  Sum_probs=113.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+.+|+++++                  ++|.+..+|.++|.||.++|+|++|+.++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS------------------IAPANPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3678899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG--IKKELAVAKKKIHERRE  350 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~~  350 (361)
                      +++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..  +...+..++.++++..+
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999887  56666666666666544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=2.2e-17  Score=135.67  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=100.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+++.|+|++|+..|++++.                  ++|.+..+|.++|.||..+|+|++|+..|++|
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~------------------~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI------------------YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            577899999999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=5e-17  Score=131.61  Aligned_cols=123  Identities=17%  Similarity=0.245  Sum_probs=115.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  .+|.+..+|.++|.|+..+|+|++|+..++++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM------------------LDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467789999999999999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...++..+++
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998888888887777766544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=4.2e-17  Score=133.40  Aligned_cols=123  Identities=12%  Similarity=0.183  Sum_probs=112.1

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++.                  .+|.+..+|.++|.|+..+|+|++|+..|++
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   80 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------------------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSY   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------cCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3577889999999999999999999999999                  8888999999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ++.++|+++.+++++|.++..+|++++|+..|+++++++|+++........+...++..+.
T Consensus        81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  141 (148)
T 2vgx_A           81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL  141 (148)
T ss_dssp             HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred             HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988877777777666655433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=3.3e-17  Score=134.25  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=99.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+++.|+|++|+++|+++++                  ++|.+..+|.++|.||.++|++++|+..++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   91 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN------------------VQERDPKAHRFLGLLYELEENTDKAVECYRRS   91 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            456678889999999999999999999998                  88888889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVES-FEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~-~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ++++|+++.+++++|.++..+|++++|+.. +++|++++|+++.++..++.+..
T Consensus        92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999999999999998877765 58899999999888887776644

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.71  E-value=3.4e-17  Score=134.21  Aligned_cols=119  Identities=16%  Similarity=0.073  Sum_probs=107.9

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      +|..+..+|++++|++.|++++.                  .+|.....++++|.+|.++|+|++|+.+++++|+++|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~------------------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~   64 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP------------------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD   64 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC------------------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            68888999999999999999998                  888999999999999999999999999999999999999


Q ss_pred             hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          298 VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       298 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+...+++..++.+.
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~  121 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY  121 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence            999999999999999999999999999999999999999999998887765544433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.69  E-value=1.1e-16  Score=127.69  Aligned_cols=123  Identities=27%  Similarity=0.372  Sum_probs=114.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  .+|....++.++|.|+..+|++++|+.+++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh------------------hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            477899999999999999999999999999                  77788899999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN-----DGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~-----~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      ++++|+++.+++++|.++..+|++++|+..|+++++++|+     +..+...+..+.......+++
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e~  135 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE  135 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998     788888888887776655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.2e-15  Score=131.68  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=111.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHH----------------HHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTN----------------SSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~  274 (361)
                      .+..+...|..++..|+|++|+..|+++++                  .+|.+..+|++                +|.+|
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA------------------LNIDRTEMYYWTNVDKNSEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence            356788899999999999999999999999                  88888888888                99999


Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      .++|++++|+..++++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+.....+
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988755543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=4.1e-16  Score=158.71  Aligned_cols=125  Identities=22%  Similarity=0.292  Sum_probs=92.7

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..++++.++|+.+.+.|+|++|+.+|++|++                  ++|....+|+|+|.+|.++|++++|+.+|++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~------------------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~   68 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALE------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYKE   68 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3577788888888888888888888888887                  6666677777777777777777777777777


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ||+++|+++.+|+++|.++..+|++++|++.|++|++++|++..++..++.+...+++.+++.
T Consensus        69 Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi  131 (723)
T 4gyw_A           69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI  131 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            777777777777777777777777777777777777777777777777777766666655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=1.8e-15  Score=116.43  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=108.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   64 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   64 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            567899999999999999999999999998                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      +.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus        65 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999988887753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=8e-15  Score=120.28  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=110.9

Q ss_pred             HHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 018098          206 SWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       206 ~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~  285 (361)
                      ....+.+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|+|++|+.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~   68 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALG   68 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            45566889999999999999999999999999998                  677778899999999999999999999


Q ss_pred             HHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          286 DTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      .++++++++|.++.+++++|.++..+|++++|+..|+++++++|.+..++..+..+.
T Consensus        69 ~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           69 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998886666663

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=1.3e-15  Score=132.45  Aligned_cols=122  Identities=18%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+++.|+|++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..+++++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   66 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALK------------------ENPQDPEALYWLARTQLKLGLVNPALENGKTLV   66 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44556666666666666666666666666                  555555566666666666666666666666666


Q ss_pred             hcCCCchhhHhHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMAL-----------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l-----------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +++|+++.+++.+|.++..+           |++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus        67 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence            66666666666666666666           6666666666666666666666665555555555444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=5.1e-15  Score=115.89  Aligned_cols=122  Identities=33%  Similarity=0.422  Sum_probs=113.5

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      ....+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE------------------LNPANAVYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhhchHHHHHHH
Confidence            345688999999999999999999999999998                  66667889999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      .+++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999888776643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=1.4e-15  Score=154.73  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=117.8

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.+..+.++|+.+.+.|+|++|+.+|++|++                  ++|....+|+|+|.++.++|++++|++.|++
T Consensus        41 ~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~------------------l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~k  102 (723)
T 4gyw_A           41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIR------------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTR  102 (723)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3578899999999999999999999999999                  8899999999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ||+++|+++.+|+++|.+|..+|++++|++.|++|++++|++..++..++.+...+.+.+++.
T Consensus       103 Al~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A          103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999988876655443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=1.3e-15  Score=120.02  Aligned_cols=103  Identities=10%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..+++.|++++|+..|+++++                  .+|.+..+|+++|.++..+|++++|+..++++++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3577889999999999999999999999                  8899999999999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=3.1e-15  Score=117.91  Aligned_cols=117  Identities=25%  Similarity=0.354  Sum_probs=109.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..++++++|+..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK------------------RNPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            577899999999999999999999999998                  56666789999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      ++++|.++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....
T Consensus        77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998888876543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.2e-15  Score=118.58  Aligned_cols=117  Identities=31%  Similarity=0.454  Sum_probs=106.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|+++++..+               .++....++.++|.+|..+++|++|+..++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---------------TPQDQAVLHRNRAACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            467889999999999999999999999998221               11224789999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988887774

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.60  E-value=5.2e-15  Score=116.01  Aligned_cols=120  Identities=29%  Similarity=0.380  Sum_probs=110.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+.+++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            577899999999999999999999999998                  66677889999999999999999999999999


Q ss_pred             hhcCCCc-------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +.++|.+       ..+++++|.++..+|++++|+..|++++++.| ++.+...+..+...+++.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            9999887       89999999999999999999999999999999 6888999988888776643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.60  E-value=1e-14  Score=127.01  Aligned_cols=124  Identities=17%  Similarity=0.252  Sum_probs=110.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHH-HHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      +..+...|..++..|+|++|+..|+++++                  +.| .+..+++++|.|+..+|++++|+.+++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLK------------------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            46789999999999999999999999999                  555 56678899999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-------GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~-------~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|++.       .++..++.+...+++.+++..
T Consensus        69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  138 (228)
T 4i17_A           69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE  138 (228)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999       446666666666655555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.60  E-value=3.8e-15  Score=121.72  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=98.4

Q ss_pred             hHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHh
Q 018098          222 HYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------KGALLDTEFAM  291 (361)
Q Consensus       222 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~Al~~~~~al  291 (361)
                      .-+.++|++|+..|+++++                  ++|.+..+|+|+|.++..++++          ++|+..|++||
T Consensus        12 ~~r~~~feeA~~~~~~Ai~------------------l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL   73 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   73 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence            3457899999999999999                  9999999999999999999876          59999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALN-----------DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      +++|++..+|+++|.+|..+|           ++++|+.+|++|++++|++...++.+..+...-+-
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el  140 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  140 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence            999999999999999999885           89999999999999999999998888877655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=1.4e-14  Score=121.71  Aligned_cols=126  Identities=19%  Similarity=0.273  Sum_probs=95.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh----------
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL----------  280 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------  280 (361)
                      .+..+.++|+.++..|+|++|+..|+++++                  ++|.+..++.++|.+|.++|++          
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~   65 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK------------------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKF   65 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467899999999999999999999999998                  4444555555555555555555          


Q ss_pred             ------------------------HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 018098          281 ------------------------KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKK  336 (361)
Q Consensus       281 ------------------------~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~  336 (361)
                                              +.|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  145 (184)
T 3vtx_A           66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ  145 (184)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence                                    45555555555667777778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018098          337 ELAVAKKKIHERREQEKK  354 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~~k~  354 (361)
                      .++.+...+++.+++.+.
T Consensus       146 ~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A          146 SIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHH
Confidence            888888877777665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=4.1e-15  Score=140.63  Aligned_cols=86  Identities=10%  Similarity=0.030  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|.+..+|+++|.++..+|++++|+..|++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..+
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHH
Q 018098          339 AVAKKK  344 (361)
Q Consensus       339 ~~~~~~  344 (361)
                      +.+...
T Consensus       241 g~~l~~  246 (382)
T 2h6f_A          241 YFVISN  246 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=1.2e-14  Score=126.33  Aligned_cols=123  Identities=20%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-----------CC
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----------GD  279 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----------~~  279 (361)
                      .+..+..+|..+.+.|++++|+..|+++++                  ++|.+..++.++|.++..+           |+
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~   99 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVA------------------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGY   99 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence            467889999999999999999999999999                  7777788888888888888           88


Q ss_pred             hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.+...+++.+++.
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~  171 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL  171 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888 78888888888877777666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=1.1e-14  Score=114.71  Aligned_cols=114  Identities=9%  Similarity=0.017  Sum_probs=101.9

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHH---HHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS---QIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+|..++..|+|++|+..|+++++                  ..|...   .++.++|.++.++|+|++|+..+++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   64 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLE------------------LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD   64 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4567889999999999999999999998                  333333   7899999999999999999999999


Q ss_pred             HhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       290 al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      ++..+|++   +.+++.+|.++..+|++++|+..|+++++..|+++.+...+..+...
T Consensus        65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            99999999   88999999999999999999999999999999998887776666543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=4.2e-15  Score=140.54  Aligned_cols=126  Identities=10%  Similarity=0.049  Sum_probs=117.8

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDT  287 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Al~~~  287 (361)
                      ...+..+..+|..+.+.|+|++|+..|+++|+                  ++|.+..+|+++|.++..+|+ +++|+.+|
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------------------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~  155 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYI  155 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------------------hCccCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence            34578899999999999999999999999999                  899999999999999999997 99999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...+++.+++.
T Consensus       156 ~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          156 TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887665543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.56  E-value=9.8e-15  Score=113.87  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=89.1

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHH---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL---RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  300 (361)
                      ..|+|++|+..|+++++                  +   +|....++.++|.+|..+|+|++|+..++++++++|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~------------------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA------------------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHS------------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHH------------------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence            36899999999999998                  6   78899999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ++++|.++..+|++++|+..|++++++.|+++.+......+
T Consensus        64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999999999998876544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=8.9e-15  Score=142.46  Aligned_cols=118  Identities=25%  Similarity=0.387  Sum_probs=111.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      +.+..+..+|+.+++.|+|++|++.|++|++                  ++|....+|.++|.+|.++|+|++|+.++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   65 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGDATR   65 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4577889999999999999999999999999                  7788899999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      |++++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+...+
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988884333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.55  E-value=2.7e-14  Score=129.31  Aligned_cols=103  Identities=25%  Similarity=0.373  Sum_probs=98.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..++.+|+.++..|+|++|+..|++++.                  .+|.+..++.++|.+|.++|+|++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467889999999999999999999999999                  77888899999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      ++++|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999976

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.54  E-value=1.1e-14  Score=119.53  Aligned_cols=97  Identities=11%  Similarity=0.017  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|.+..+++++|.++.++|+|++|+..|++++.++|.++.+|+.+|.++..+|+|++|+..|+++++++|+++.++..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEKKQ  355 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k~~  355 (361)
                      +.+...+++.+++.+..
T Consensus       111 g~~~~~lg~~~eA~~~~  127 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECF  127 (151)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999998887766443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=1.3e-13  Score=106.91  Aligned_cols=116  Identities=33%  Similarity=0.493  Sum_probs=107.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++...|++++|+..++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            366788999999999999999999999998                  55666778999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      +.++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...
T Consensus        70 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999888887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=1.2e-13  Score=115.93  Aligned_cols=123  Identities=17%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-----------cCCCCc-----cchhHHHHHHHHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDE-----GKSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~nla~~~  274 (361)
                      .+..+..+|..+++.|++++|+..+.+++...+....           ......     .......|....++..+|.+|
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~  117 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY  117 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            4566777777888888888888887777764432100           000000     001235677788999999999


Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      .++|++++|+..++++++++|.++.+++++|.+|..+|++++|+.+|++|++++|+++.
T Consensus       118 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            99999999999999999999999999999999999999999999999999999997643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.51  E-value=1e-13  Score=109.85  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|..+..+.++|.+|++.|+|++|+..|++||+++|.++.+|+++|.++..+|++++|+.+|+++++++|++..++..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEKK  354 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k~  354 (361)
                      +.+...+++.+++.+.
T Consensus        88 g~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           88 AACLVAMREWSKAQRA  103 (126)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHH
Confidence            9999999888776544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.51  E-value=1.7e-13  Score=119.11  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=110.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+..+|..++..|+|++|+..|+++++                  .+|....++.++|.+|..+|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  103 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIK------------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI  103 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHH------------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            35677799999999999999999999998                  788889999999999999999999999999999


Q ss_pred             hcCCCch-------hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       292 ~~~p~~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~  348 (361)
                      +++|++.       .+|+.+|.++..+|++++|+..|+++++++|+  +..++..++.+.......
T Consensus       104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999998       77999999999999999999999999999999  899999999988766655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.4e-13  Score=118.65  Aligned_cols=105  Identities=20%  Similarity=0.194  Sum_probs=92.9

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN  297 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~  297 (361)
                      +|..+++.|+|++|+..|+++++                  ++|.+..++.++|.++..+|++++|+..|+++++++|++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQ------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999                  888999999999999999999999999999999999999


Q ss_pred             hhhHhHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          298 VKALFRQGQAYMA-----------------------------------LNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       298 ~ka~~~~a~a~~~-----------------------------------l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +.+++++|.+|..                                   +|+|++|+.+|+++++++|++ .+...+..+
T Consensus       122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            8888888777643                                   357889999999999999964 344445554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.50  E-value=1.6e-13  Score=117.79  Aligned_cols=122  Identities=20%  Similarity=0.174  Sum_probs=111.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  .   ...++.++|.+|..+|++++|+.+++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~a   63 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------------------P---HSRICFNIGCMYTILKNMTEAEKAFTRS   63 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788999999999999999999999864                  1   2468999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +.++|.++.+++++|.++..+|++++|+..|++++++.|.+.                .++..++.+...+++.+++.+
T Consensus        64 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A           64 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999999999999999999999999999877                899999999888887766554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=3.6e-13  Score=112.40  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=105.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHH-HHhcCCh--HHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSAC-KLKLGDL--KGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~Al~~~  287 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  +.|.+..++.++|.+ +...|++  ++|+..+
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQ------------------LRGENAELYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            567899999999999999999999999999                  788888999999999 8899999  9999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +++++++|.+..+++.+|.++..+|++++|+..|+++++++|.+......+..+.
T Consensus       105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999876665554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=9.4e-14  Score=105.73  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=96.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ------------------LDPEESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45678899999999999999999999998                  666677889999999999999999999999999


Q ss_pred             hcCCC--chhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCH
Q 018098          292 RDGDD--NVKALFRQGQAYMAL-NDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       292 ~~~p~--~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~~  332 (361)
                      +++|.  +..+++.+|.++..+ |++++|+++++++++.+|.+.
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999  999999999999999 999999999999999999763

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.46  E-value=7.8e-13  Score=103.51  Aligned_cols=122  Identities=29%  Similarity=0.376  Sum_probs=111.5

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..++..|++++|+..|++++.                  ..|....++.++|.++...|++++|+..+++++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4677889999999999999999999998                  5566677899999999999999999999999999


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .+|.+..+++.+|.++..+|++++|+..+++++++.|.+..++..++.+....++.+++.
T Consensus        64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  123 (136)
T 2fo7_A           64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI  123 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH
Confidence            999999999999999999999999999999999999999999999998887777665554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.46  E-value=3.7e-13  Score=133.55  Aligned_cols=126  Identities=11%  Similarity=0.103  Sum_probs=117.1

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|+++++                  ++|.+..++.++|.+|..+|++++|+..+++
T Consensus        21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A           21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLA------------------LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3467899999999999999999999999999                  7777888999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI---HERREQEK  353 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~---~~~~~~~k  353 (361)
                      +++++|++..+++++|.++..+|++++|++.|+++++++|++..++..++.+...+   ++.+++..
T Consensus        83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888   66655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.45  E-value=2.4e-13  Score=110.91  Aligned_cols=96  Identities=11%  Similarity=0.058  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|.+..+++++|.++...|+|++|+..+++++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEKK  354 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k~  354 (361)
                      +.+...+++.+++.+.
T Consensus        96 g~~~~~~g~~~~A~~~  111 (148)
T 2vgx_A           96 AECLLQXGELAEAESG  111 (148)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999888877766543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=5.1e-13  Score=129.88  Aligned_cols=124  Identities=12%  Similarity=0.022  Sum_probs=115.4

Q ss_pred             hHHHHHhcchhHHh---------hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-----
Q 018098          212 VDSIKVFGNEHYKK---------QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-----  277 (361)
Q Consensus       212 a~~~~~~G~~~~~~---------g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----  277 (361)
                      +..+..+|..+...         |+|++|+..|+++++                  ++|.+..+|+++|.+|..+     
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ------------------MDVLDGRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHHHHhhc
Confidence            35677788888888         999999999999999                  8888899999999999999     


Q ss_pred             ---CChHHHHHHHHHHhhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          278 ---GDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       278 ---~~~~~Al~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                         |++++|+..+++|++++|   .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence               999999999999999999   99999999999999999999999999999999999999999999999988877665


Q ss_pred             HH
Q 018098          352 EK  353 (361)
Q Consensus       352 ~k  353 (361)
                      .+
T Consensus       312 i~  313 (474)
T 4abn_A          312 LE  313 (474)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=1.4e-12  Score=108.05  Aligned_cols=124  Identities=20%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|++++|+..|++++.                  ..|....++.++|.++...|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA------------------DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            56688899999999999999999999998                  666677889999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ..+|.+..+++.+|.++..+|++++|+..++++++++|.+..++..++.+....++.+++.+
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888776665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=7.2e-13  Score=128.85  Aligned_cols=124  Identities=17%  Similarity=0.113  Sum_probs=116.5

Q ss_pred             hhHHHHHhcchhHHhhhH-HHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .+..+..+|..++..|+| ++|+.+|+++++                  ++|....+|+++|.+|.++|++++|+..|++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVK------------------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            477899999999999999 999999999999                  7888889999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMAL---------NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI--------HERREQE  352 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l---------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~--------~~~~~~~  352 (361)
                      +++++|+ ..+++++|.++..+         |++++|+..|+++++++|++..++..++.+...+        ++.+++.
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            9999999 79999999999999         9999999999999999999999999999999888        7766654


Q ss_pred             H
Q 018098          353 K  353 (361)
Q Consensus       353 k  353 (361)
                      +
T Consensus       242 ~  242 (474)
T 4abn_A          242 S  242 (474)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.8e-13  Score=116.36  Aligned_cols=98  Identities=21%  Similarity=0.370  Sum_probs=49.1

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIK------------------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3444445555555555555555555544                  3333344455555555555555555555555555


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            555555555555555555555555555555555555

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.42  E-value=2.5e-13  Score=137.93  Aligned_cols=124  Identities=11%  Similarity=-0.005  Sum_probs=115.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  .+|.+..+|+++|.++..+|++++|+..|++|
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  493 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAE------------------RVGWRWRLVWYRAVAELLTGDYDSATKHFTEV  493 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhc------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788899999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++++|+++.+++++|.++..+|++++ +..|+++++++|++..++..++.+...+++.+++.+
T Consensus       494 l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          494 LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999 999999999999999999999999988888776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=2.4e-12  Score=114.15  Aligned_cols=114  Identities=15%  Similarity=0.058  Sum_probs=104.9

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++.                  .+|....++.++|.++..+|++++|+..+++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS  102 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH------------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3577889999999999999999999999999                  6777788999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +++++|.++.+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus       103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998655554433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=6.1e-13  Score=118.26  Aligned_cols=107  Identities=14%  Similarity=0.143  Sum_probs=97.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH---HHHHHHHHHHHHhcCChHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      .+..+..+|..+++.|+|++|+..|+++++                  ..|..   ..+++++|.||.++|+|++|+..+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~   75 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFT------------------YGRTHEWAADAQFYLARAYYQNKEYLLAASEY   75 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGG------------------GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            467899999999999999999999999998                  33333   789999999999999999999999


Q ss_pred             HHHhhcCCCc---hhhHhHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          288 EFAMRDGDDN---VKALFRQGQAYMA--------LNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       288 ~~al~~~p~~---~ka~~~~a~a~~~--------l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      ++++++.|++   ..+++.+|.++..        +|++++|+..|+++++++|++..+.
T Consensus        76 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           76 ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            9999998854   6799999999999        9999999999999999999987666

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=1.8e-12  Score=111.09  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=97.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|+++++                  ++|....+++++|.+|..+|++++|+.++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            56789999999999999999999999999                  777788999999999999999999999999999


Q ss_pred             hcCCCch----------------hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          292 RDGDDNV----------------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       292 ~~~p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ++.|.+.                .+++++|.++..+|++++|+..|+++++++|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9888776                9999999999999999999999999999999764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=4.4e-12  Score=111.08  Aligned_cols=141  Identities=13%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc------------------CCCCccc-----hhH---------
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------------------EGIDEGK-----SSS---------  258 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------------------~~~~~~~-----~~~---------  258 (361)
                      .+..+..+|..++..|+|++|+..|++++++.+...+.                  .......     ...         
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  116 (258)
T 3uq3_A           37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT  116 (258)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence            35677888888899999999999999988854321100                  0000000     001         


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHH
Q 018098          259 -----------------LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESF  321 (361)
Q Consensus       259 -----------------~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~  321 (361)
                                       ..|....++.++|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|
T Consensus       117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                             234444555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          322 EKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       322 ~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +++++++|++..++..++.+...+++.+++
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            666666666666666666655555544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=1.1e-12  Score=121.54  Aligned_cols=123  Identities=17%  Similarity=0.175  Sum_probs=107.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..+++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56678888889999999999999999988                  666677889999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +++|.++.+++.+|.++..+|++++|+..|+++++++|++           ..++..++.+...+++.+++.
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999999999999999999999999999999999998887           788888888888877665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=2e-12  Score=107.21  Aligned_cols=125  Identities=19%  Similarity=0.159  Sum_probs=114.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|++++.                  ..|....++.++|.++...|++++|+..++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   68 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------ADAFDVDVALHLGIAYVKTGAVDRGTELLERS   68 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC------------------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467788999999999999999999999988                  45556788999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +.++|.+..+++.+|.++...|++++|+..++++++++|.+..++..++.+....++.+++.+
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887776655443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=1.6e-13  Score=139.38  Aligned_cols=115  Identities=14%  Similarity=0.010  Sum_probs=108.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++|++                  ++|.+..+++++|.++.++|+|++ +.+|++|
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLD------------------TFPGELAPKLALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence            366788899999999999999999999999                  888889999999999999999999 9999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      ++++|+++.+++++|.++..+|++++|++.|+++++++|++..++..++.+...
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998888644

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.39  E-value=3.5e-12  Score=117.09  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=107.9

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .....|..+++.|++++|+..|++++...+.              .......++.++|.++.++|++++|+..+++++++
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS--------------VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3456689999999999999999999983321              12234456889999999999999999999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..++..+++.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=4.6e-12  Score=110.24  Aligned_cols=124  Identities=19%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALE------------------LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------cCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            356788889999999999999999999998                  55566677788888888888888888888888


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.
T Consensus       118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888888888888888888888888888888877777777776666554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=2e-12  Score=120.29  Aligned_cols=120  Identities=14%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      ..+|..+...|++++|+..|++++.                  ..|.  ...++.++|.++..+|++++|+..+++++++
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  242 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAH------------------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV  242 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHH------------------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHH------------------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4458899999999999999999998                  5565  6778999999999999999999999999999


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++..
T Consensus       243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999888877666543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.38  E-value=4.4e-13  Score=111.86  Aligned_cols=122  Identities=15%  Similarity=0.085  Sum_probs=105.7

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +...+..++..|+|++|+..|++++.                  .+|....++.++|.+|..+|++++|+..+++++.++
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   74 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIR------------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR   74 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHH------------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            33455667788999999999999998                  777788899999999999999999999999999999


Q ss_pred             CCchhhHhHHHHH-HHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQA-YMALNDV--DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       295 p~~~ka~~~~a~a-~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      |.++.+++.+|.+ +...|++  ++|+..|+++++++|++..++..++.+....++.+++...
T Consensus        75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  137 (177)
T 2e2e_A           75 GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL  137 (177)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999999999999 8899999  9999999999999999999999999998888777665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=8.5e-14  Score=106.41  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=81.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ++|.+..++.++|.|+.++|+|++|+.+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------------------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467788889999999999999999999988                  67777888899999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      ++++|++      ..+++++|.++..+|++++|+..+++
T Consensus        65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999988      88899999999988888887766554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=1.4e-12  Score=121.19  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+...|+|++|+..|+++++                  ..|....+|.++|.+|..+|++++|+..++++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALT------------------VRPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356788999999999999999999999999                  77777889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|+            +..++..++.+...+++.+..++
T Consensus       274 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999999999999999999999999999999999999987            36778888888887776655443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=5.6e-12  Score=112.01  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=105.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh--------cCChHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK--------LGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A  283 (361)
                      +..+..+|..+++.|+|++|+..|+++++..+               -++....+++++|.|+..        +|++++|
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A  116 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA  116 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---------------CCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            67889999999999999999999999998321               123556789999999999        9999999


Q ss_pred             HHHHHHHhhcCCCchhhH-----------------hHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 018098          284 LLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELAVAKK  343 (361)
Q Consensus       284 l~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~  343 (361)
                      +..++++++.+|++..+.                 +.+|.+|..+|++++|+..|+++++..|++   ..++..++.+..
T Consensus       117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence            999999999999987666                 899999999999999999999999999984   567888888877


Q ss_pred             HH
Q 018098          344 KI  345 (361)
Q Consensus       344 ~~  345 (361)
                      .+
T Consensus       197 ~~  198 (261)
T 3qky_A          197 AY  198 (261)
T ss_dssp             HH
T ss_pred             Hh
Confidence            66

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.37  E-value=1.9e-12  Score=104.34  Aligned_cols=96  Identities=10%  Similarity=0.053  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      ++|.....++++|.+++..|+|++|+..+++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            77888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEKK  354 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k~  354 (361)
                      +.+...+++.+++.+.
T Consensus        93 g~~~~~~g~~~~A~~~  108 (142)
T 2xcb_A           93 AECHLQLGDLDGAESG  108 (142)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999888877665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.37  E-value=4.7e-12  Score=110.25  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=96.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+++.|+|++|+..|+++++..+               ..+....+++++|.+|.++|+|++|+..+++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   68 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP---------------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            56788999999999999999999999998221               122345789999999999999999999999999


Q ss_pred             hcCCCchh---hHhHHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 018098          292 RDGDDNVK---ALFRQGQAYMA------------------LNDVDAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       292 ~~~p~~~k---a~~~~a~a~~~------------------l~~~~~A~~~~~~al~l~P~~~~~~~~  337 (361)
                      +.+|++..   +++.+|.++..                  +|++++|+..|+++++..|++..+...
T Consensus        69 ~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a  135 (225)
T 2yhc_A           69 RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA  135 (225)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred             HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            99999875   89999999886                  579999999999999999998765543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.37  E-value=2.4e-12  Score=116.66  Aligned_cols=124  Identities=10%  Similarity=0.049  Sum_probs=107.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF-  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~-  289 (361)
                      .+..+...|..+...|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..+++ 
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ------------------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH------------------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            356788899999999999999999999999                  8888889999999999999998887655554 


Q ss_pred             ---------------------------------HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHH
Q 018098          290 ---------------------------------AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGI  334 (361)
Q Consensus       290 ---------------------------------al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--~~~  334 (361)
                                                       ++..+|+++.+++.+|.++..+|++++|+..|+++++++|++  ..+
T Consensus       178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence                                             466788999999999999999999999999999999999988  889


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018098          335 KKELAVAKKKIHERREQE  352 (361)
Q Consensus       335 ~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+..+...+.+..++.
T Consensus       258 ~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          258 RXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHcCCCCcHH
Confidence            999999988876554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=6.7e-12  Score=110.18  Aligned_cols=121  Identities=20%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALA------------------SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45677788888888888888888888887                  344445556666666666666666666666666


Q ss_pred             h--cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          292 R--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       292 ~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      .  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.++
T Consensus       133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            6  5555666666666666666666666666666666666666666666655555544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=3.4e-12  Score=119.77  Aligned_cols=121  Identities=22%  Similarity=0.237  Sum_probs=89.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+.+.|++++|+..|+++++                  ++|....+|.++|.++.+.|++++|+..++++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  127 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALR------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467889999999999999999999999998                  55666666777777777777777777777777


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      ++++|++..++..+|.++..+|++++|+..|+++++++|++..++..++.+....++..
T Consensus       128 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  186 (388)
T 1w3b_A          128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777777777777777777777777766666666666655544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=1.7e-12  Score=115.29  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      +.+...|..++..|+|++|+..|+++++                  .+|....++.++|.++..+|++++|+..+++++.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   65 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------------------KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS   65 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHH------------------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3456677777777777777777777776                  3344444556666666666666666666666665


Q ss_pred             cCCCch----hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNV----KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       293 ~~p~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                       .|.+.    .+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus        66 -~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           66 -KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             -TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             -ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence             22332    23566666666666666666666666666666666666666665555554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=4.1e-12  Score=110.54  Aligned_cols=124  Identities=22%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  151 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALR------------------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA  151 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            356788899999999999999999999998                  55666778999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus       152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  213 (243)
T 2q7f_A          152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL  213 (243)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999887776665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=8.3e-12  Score=106.96  Aligned_cols=122  Identities=15%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Al~~~~~a  290 (361)
                      +..+..+|..+...|++++|+..|++++.                  ..|....++.++|.++..+ |++++|+..++++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALS------------------IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            45666777777778888888888888777                  4455556677777777777 7777777777777


Q ss_pred             hh--cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MR--DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.  .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A          104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            77  55556677777777777777777777777777777777777777777766666555444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.36  E-value=3.6e-12  Score=106.55  Aligned_cols=121  Identities=13%  Similarity=0.112  Sum_probs=93.0

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH----
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE----  288 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~----  288 (361)
                      ..+...|..++..|++++|+..|+++++                  .+|.+..++.++|.++..+|++++|+..++    
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL   68 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence            3456677777778888888888888877                  777777777777777777777776665444    


Q ss_pred             ------------------------------HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 018098          289 ------------------------------FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND--GGIKK  336 (361)
Q Consensus       289 ------------------------------~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--~~~~~  336 (361)
                                                    ++++++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++.
T Consensus        69 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~  148 (176)
T 2r5s_A           69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK  148 (176)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred             ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence                                          4455677788889999999999999999999999999999875  55888


Q ss_pred             HHHHHHHHHHHHHHH
Q 018098          337 ELAVAKKKIHERREQ  351 (361)
Q Consensus       337 ~l~~~~~~~~~~~~~  351 (361)
                      .++.+...+++..++
T Consensus       149 ~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          149 TFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHhCCCCcH
Confidence            888887777655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=6.2e-12  Score=107.76  Aligned_cols=126  Identities=16%  Similarity=0.050  Sum_probs=114.2

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|++++|+..|+++++                  ..|....++..+|.++..+|++++|+..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   67 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALK------------------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQ   67 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------hCccchHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3577889999999999999999999999998                  6667778999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMAL-NDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~--l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.++|.+..+++.+|.++..+ |++++|+..|+++++  .+|.+..++..++.+....++.+++..
T Consensus        68 a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999 999999999999999  667778889999988887776665543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=4.8e-12  Score=118.77  Aligned_cols=140  Identities=16%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-----------cCCCCccc-----hhHHHHHHHHHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEGK-----SSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~~~nla~~~~  275 (361)
                      +..+..+|..+...|++++|+..|++++++-+....           ........     ...++|....++.++|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            566777888888888888888888888873221100           00000000     01234445556666666666


Q ss_pred             hcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       276 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      .+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666665555554443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=7e-12  Score=111.18  Aligned_cols=123  Identities=16%  Similarity=0.084  Sum_probs=109.1

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~  296 (361)
                      .++..+...++|++|+..|++++....              ...|....++.++|.++..+|++++|+..+++++.++|.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~   75 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD   75 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ceeeccCccchHHHHHHHHHHHHhccc--------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence            455566678999999999999998311              025678899999999999999999999999999999999


Q ss_pred             chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       297 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.+
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999999888877765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.34  E-value=4e-12  Score=116.73  Aligned_cols=112  Identities=20%  Similarity=0.249  Sum_probs=105.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++.+..+|..++..|+|++|+..|++++.                  .+|....++.++|.++..+|++++|+..++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            367889999999999999999999999998                  77778889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP---NDGGIKKELAV  340 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P---~~~~~~~~l~~  340 (361)
                      +.++|++..+++.+|.++..+|++++|+..|+++++++|   ++..++..++.
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            999999999999999999999999999999999999999   88888877753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.34  E-value=6.8e-12  Score=97.01  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHH
Q 018098          230 MALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM  309 (361)
Q Consensus       230 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~  309 (361)
                      .|+..|+++++                  .+|.+..+++++|.+|..+|++++|+..++++++++|.+..+++.+|.++.
T Consensus         3 ~a~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLA------------------QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHT------------------TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            57889999998                  677778899999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 018098          310 ALNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKKIHER  348 (361)
Q Consensus       310 ~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~  348 (361)
                      .+|++++|+..|+++++++|.  +......+..+...+.+.
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            999999999999999999985  445555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=8.8e-12  Score=113.08  Aligned_cols=131  Identities=8%  Similarity=-0.074  Sum_probs=107.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-GDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~Al~~~~~  289 (361)
                      .+..+.++|..+...|+|++|+.+|++|+.+....            ........++.++|.+|..+ |++++|+.+|++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~  143 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            47788999999999999999999999999944211            01122367899999999995 999999999999


Q ss_pred             HhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-------IKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~-------~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++.|..      ..++.++|.++..+|++++|+..|++++++.|++..       ++..++.+...+++..++.+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99998754      578999999999999999999999999999998654       45667777776666555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.1e-11  Score=97.22  Aligned_cols=93  Identities=14%  Similarity=0.097  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ..+..+.++|.++++.|+|++|+..++++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018098          342 KKKIHERREQEKK  354 (361)
Q Consensus       342 ~~~~~~~~~~~k~  354 (361)
                      ...+++.+++...
T Consensus        82 ~~~~~~~~~A~~~   94 (126)
T 3upv_A           82 QIAVKEYASALET   94 (126)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHHhCHHHHHHH
Confidence            9888877665543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.34  E-value=4.3e-12  Score=100.49  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG------  333 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~------  333 (361)
                      .+..+.++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..      
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999997653      


Q ss_pred             -HHHHHHHHHHHHHHHHHHH
Q 018098          334 -IKKELAVAKKKIHERREQE  352 (361)
Q Consensus       334 -~~~~l~~~~~~~~~~~~~~  352 (361)
                       ++..++.+...+++.+++.
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence             4555555555555554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.33  E-value=9.2e-12  Score=110.46  Aligned_cols=118  Identities=22%  Similarity=0.224  Sum_probs=104.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+...|++++|+..|+++++                  .+|....++.++|.+|..+|++++|+..+++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD------------------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            55678899999999999999999999998                  777777899999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      +++|.++.+++.+|...+..+++++|+..|+++++++|++...+..++.+...+.+
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999999444445699999999999999999999888888888776654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=7.1e-12  Score=113.80  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=113.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVE------------------LRPDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356788899999999999999999999998                  66777789999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN------------DGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|.            +..++..++.+...+++.+++.
T Consensus       233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999            7889999999988887776554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.32  E-value=5.9e-12  Score=110.52  Aligned_cols=125  Identities=15%  Similarity=0.135  Sum_probs=114.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.                  ..|....++.++|.++..+|++++|+..++++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE------------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            478899999999999999999999999998                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK--LEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~--l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++  .+|.+..++..++.+....++.+++.+
T Consensus        98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A           98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999  888888999999988877776655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.1e-11  Score=119.83  Aligned_cols=107  Identities=23%  Similarity=0.297  Sum_probs=99.8

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+.+..+...|+.+++.|+|++|+..|++++.                  .+| +..++.++|.|+.++|++++|+..++
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p-~~~~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALE------------------LKE-DPVFYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------------------HCC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------cCc-cHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            45789999999999999999999999999998                  555 46789999999999999999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      ++++++|++..+++.+|.++..+|++++|+..|+++++++|.+...
T Consensus        64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            9999999999999999999999999999999999999999976443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=1.6e-11  Score=108.75  Aligned_cols=134  Identities=17%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|++++++......          ...+....++.++|.+|..+|++++|+.++.+
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  110 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC----------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            35778899999999999999999999999984321100          01367788999999999999999999999999


Q ss_pred             Hhhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.+        +|....+++.+|.++..+|++++|+..|++++++        +|....++..++.+...+++.+++.+
T Consensus       111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9988        5778999999999999999999999999999999        67677888899999888877766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.30  E-value=2.2e-11  Score=116.13  Aligned_cols=120  Identities=20%  Similarity=0.222  Sum_probs=105.3

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ....|..++..|++++|+..|++++.+.+.              .......++.++|.++.++|++++|+..+++++.++
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  325 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPS--------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME  325 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            345599999999999999999999983221              111235689999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      |+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  379 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS  379 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999887766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=112.41  Aligned_cols=125  Identities=20%  Similarity=0.085  Sum_probs=112.6

Q ss_pred             hhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .+..+..+|..++..| ++++|+..|++++.                  .+|....+|.++|.++..+|++++|+..+++
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  150 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATT------------------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFT  150 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHT------------------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4567888999999999 99999999999998                  5666777899999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.+.|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++.+
T Consensus       151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888777666543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.30  E-value=1.5e-11  Score=111.83  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHH----HHHHhcCChHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS----ACKLKLGDLKGALLD  286 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla----~~~~~l~~~~~Al~~  286 (361)
                      ....+..+|..+.+.|++++|+..|+++++.                  +|...  ..+++    .++...|++++|+..
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------~p~~~--~~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ------------------DEDAT--LTQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCH--HHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CcCcH--HHHHHHHHHHHHhCchHHHHHHHH
Confidence            3567778888999999999999999999873                  22221  11111    112233556666666


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+...+++.
T Consensus       189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            66666666666666666666666666666666666666666666666665555555444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=1.3e-11  Score=107.48  Aligned_cols=124  Identities=15%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH---HHHHHHHHHHHHh------------
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK---SQIFTNSSACKLK------------  276 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~------------  276 (361)
                      ...+..+|..+++.|+|++|+..|+++++                  ..|..   ..+++++|.++.+            
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~------------------~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~  102 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR------------------LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGV  102 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCTTHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            46788999999999999999999999998                  33332   3478888888876            


Q ss_pred             ------cCChHHHHHHHHHHhhcCCCchhhH-----------------hHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-
Q 018098          277 ------LGDLKGALLDTEFAMRDGDDNVKAL-----------------FRQGQAYMALNDVDAAVESFEKALKLEPNDG-  332 (361)
Q Consensus       277 ------l~~~~~Al~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~-  332 (361)
                            +|++++|+..++++++.+|++..++                 +.+|.+|...|++++|+..|+++++..|+++ 
T Consensus       103 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  182 (225)
T 2yhc_A          103 DRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA  182 (225)
T ss_dssp             -----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             chhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence                  5789999999999999999997665                 6789999999999999999999999999986 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHH
Q 018098          333 --GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       333 --~~~~~l~~~~~~~~~~~~~~k  353 (361)
                        .++..++.+...+++..++.+
T Consensus       183 ~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          183 TRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHH
Confidence              678888888888887776643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=2.3e-11  Score=115.97  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=106.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..+++.|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------GDPDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3578899999999999999999999999998                  6777889999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG---GIKKELAVA  341 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~l~~~  341 (361)
                      +++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.   .++..+..+
T Consensus        86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988   777666544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.6e-11  Score=111.55  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG---------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~---------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ..|....++.++|.++..+|++++|+..+++++.+.         |.++.+++.+|.++..+|++++|+..|+++++++|
T Consensus       188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  267 (330)
T 3hym_B          188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP  267 (330)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence            344555667777777777777777777777777665         55566777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Q 018098          330 NDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       330 ~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++..++..++.+...+++.+++.
T Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~  290 (330)
T 3hym_B          268 QNASTYSAIGYIHSLMGNFENAV  290 (330)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhccHHHHH
Confidence            77777777777777666665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.29  E-value=5.4e-11  Score=93.30  Aligned_cols=89  Identities=20%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 018098          346 HERREQEKK  354 (361)
Q Consensus       346 ~~~~~~~k~  354 (361)
                      ++.+++...
T Consensus        99 g~~~~A~~~  107 (121)
T 1hxi_A           99 HNANAALAS  107 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            888776643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.29  E-value=2.5e-11  Score=112.41  Aligned_cols=118  Identities=16%  Similarity=0.161  Sum_probs=108.2

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      ..|..+ ..|++++|+..|+++++                  ..|.  ...++.++|.++..+|++++|+..+++++.++
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~------------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  247 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVR------------------LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR  247 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHH------------------HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHH------------------hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            455554 89999999999999998                  6666  67899999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.+++..
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999988887766554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.28  E-value=2.8e-11  Score=94.49  Aligned_cols=102  Identities=30%  Similarity=0.462  Sum_probs=94.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      ...+..+|..++..|++++|+..|++++.                  ..|....++.++|.++...|++++|+..+++++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45677889999999999999999999998                  556667789999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      ...|.+..+++.+|.++..+|++++|+..|+++++++|.+
T Consensus        97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=116.17  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=104.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|.+++..|+|++|+++|++|+++.+.....+         .++.....|.|+|.+|..+|++++|+.+++++
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~---------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ---------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV  120 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG---------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc---------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            367788899999999999999999999999654321111         24455678999999999999999999999999


Q ss_pred             hhcC--------CCchhhHhHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          291 MRDG--------DDNVKALFRQGQAYMAL--NDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~a~a~~~l--~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +++.        +..+.++..+|.++..+  ++|++|+.+|+++++++|+++.++..++.+...+.
T Consensus       121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            9763        34577888888887665  57999999999999999999999988887765554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=7.1e-11  Score=86.49  Aligned_cols=83  Identities=31%  Similarity=0.456  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ....++.++|.++..++++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHH
Q 018098          342 KKK  344 (361)
Q Consensus       342 ~~~  344 (361)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.25  E-value=5.1e-11  Score=98.12  Aligned_cols=94  Identities=16%  Similarity=0.134  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      +.....+.++|.+++..|+|++|+..++++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          341 AKKKIHERREQEKK  354 (361)
Q Consensus       341 ~~~~~~~~~~~~k~  354 (361)
                      +...+++.+++.+.
T Consensus        88 ~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           88 ARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHccCHHHHHHH
Confidence            99998887766543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=3e-11  Score=109.52  Aligned_cols=132  Identities=16%  Similarity=0.077  Sum_probs=107.8

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+.+..+...|+.+...|+|++|+.+|.+|+++....            ...+....+|.++|.+|.++|++++|+.+++
T Consensus        34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  101 (292)
T 1qqe_A           34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE  101 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3355667777888999999999999999999843221            0123457789999999999999999999999


Q ss_pred             HHhhcCCCc------hhhHhHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDN------VKALFRQGQAYMAL-NDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|+.+.|..      +.++.++|.+|..+ |++++|+.+|++|+++.|.+      ..++..++.+...+++.+++.
T Consensus       102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            999988754      57899999999995 99999999999999998864      356777788877777766654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.24  E-value=7.7e-11  Score=89.62  Aligned_cols=84  Identities=12%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKK  336 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~  336 (361)
                      ...++.++|.++..+|+|++|+..++++++++|.++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999998      66677


Q ss_pred             HHHHHHHHHH
Q 018098          337 ELAVAKKKIH  346 (361)
Q Consensus       337 ~l~~~~~~~~  346 (361)
                      .++.+...++
T Consensus        83 ~~~~~~~~~~   92 (111)
T 2l6j_A           83 RLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7776666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=5.9e-12  Score=116.84  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc-------
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-------  297 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~-------  297 (361)
                      .++|++|+..|++++.                  .+|....++.++|.+++++|+|++|+..|++|+.++|.+       
T Consensus       126 L~~~~~A~~~~~~a~~------------------~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~  187 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSE------------------EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE  187 (336)
T ss_dssp             EEEEECCCCGGGCCHH------------------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH
T ss_pred             EeecccccchhcCCHH------------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH
Confidence            4567778888888887                  889999999999999999999999999999999999999       


Q ss_pred             --------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          298 --------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       298 --------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                              ..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++...
T Consensus       188 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  252 (336)
T 1p5q_A          188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD  252 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence                    699999999999999999999999999999999999999999999888877766543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=2.5e-11  Score=120.29  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      .|++++|+..|+++++                  .+|....++.++|.++..+|++++|+..++++++++|++..+++.+
T Consensus         2 ~g~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   63 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR------------------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL   63 (568)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4789999999999998                  7888889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          305 GQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       305 a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |.++..+|++++|+..|+++++++|++..++..++.+...+++.+++.+
T Consensus        64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999988887766554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.23  E-value=5.1e-11  Score=97.43  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-------chh-----hHhHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDD-------NVK-----ALFRQGQAYMALNDVDAAVESFEKALKL---  327 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~-------~~k-----a~~~~a~a~~~l~~~~~A~~~~~~al~l---  327 (361)
                      .+..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++|+++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            5567899999999999999999999999999999       433     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHHHHHHHHHHH
Q 018098          328 ----EPNDGGIK----KELAVAKKKIHERREQEKK  354 (361)
Q Consensus       328 ----~P~~~~~~----~~l~~~~~~~~~~~~~~k~  354 (361)
                          +|++..++    ..++.+...+++.+++...
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~  124 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  124 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence                99999999    9999999998888776544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=5.8e-11  Score=105.10  Aligned_cols=109  Identities=12%  Similarity=0.065  Sum_probs=95.4

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ...+..+..+|..+...|+|++|+.+|.+++++......          ..+|....++.++|.++..+|++++|+..++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  151 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR  151 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345778899999999999999999999999984321100          0146778899999999999999999999999


Q ss_pred             HHhhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          289 FAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       289 ~al~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      +++.+        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99998        7888999999999999999999999999999987

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.22  E-value=4.2e-11  Score=90.50  Aligned_cols=83  Identities=18%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKK  336 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~  336 (361)
                      .+|.+..+++++|.+|..+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            356778899999999999999999999999999999999999999999999999999999999999999875  344444


Q ss_pred             HHHHH
Q 018098          337 ELAVA  341 (361)
Q Consensus       337 ~l~~~  341 (361)
                      .+..+
T Consensus        82 ~l~~~   86 (100)
T 3ma5_A           82 ELQDA   86 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.21  E-value=4.8e-11  Score=116.27  Aligned_cols=144  Identities=13%  Similarity=0.012  Sum_probs=103.3

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc---------cccCCCCccc------hhHHHHHHHHHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC---------WEKEGIDEGK------SSSLRKTKSQIFTNSSAC  273 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~---------~~~~~~~~~~------~~~~~~~~~~~~~nla~~  273 (361)
                      ...+..+..+|..++..|++++|+..|++++...+..         ........+-      .....|....++.++|.+
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  319 (537)
T 3fp2_A          240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM  319 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            3446677777777778888888888887777643210         0000000000      012455667778888888


Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          274 KLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       274 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +..+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus       320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI  398 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888877776665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.21  E-value=9.9e-11  Score=106.15  Aligned_cols=115  Identities=14%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  300 (361)
                      .+...|++++|+..|+++++                  ..|....++.++|.++..+|++++|+..+++++.++|+++.+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  208 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALE------------------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL  208 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            58889999999999999998                  666778899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++.+++.+
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999888877766543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.21  E-value=8.2e-11  Score=106.85  Aligned_cols=96  Identities=10%  Similarity=0.049  Sum_probs=89.2

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~  303 (361)
                      ..|++++|+..|+++++                  ..|.+..+++++|.++.++|++++|+..++++|+++|+++.++++
T Consensus       178 ~~~~~~eA~~~~~~~l~------------------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMAD------------------KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             CTTHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45899999999999998                  677788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 018098          304 QGQAYMALNDVDA-AVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       304 ~a~a~~~l~~~~~-A~~~~~~al~l~P~~~~~~~~  337 (361)
                      +|.++..+|++++ +..+++++++++|+++.+...
T Consensus       240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999976 568999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.20  E-value=9.4e-11  Score=114.21  Aligned_cols=127  Identities=17%  Similarity=0.090  Sum_probs=106.9

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +...+..++..|.+-.....|.+|+.++..+.           ..+|. ..++.++|.++..+|++++|+..+++++.++
T Consensus       239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-----------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  306 (537)
T 3fp2_A          239 RENAALALCYTGIFHFLKNNLLDAQVLLQESI-----------NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN  306 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-----------hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence            44455666777777666677788888665432           23344 6789999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+....++.+++..
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999888877766544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.20  E-value=1.3e-10  Score=109.09  Aligned_cols=133  Identities=11%  Similarity=0.076  Sum_probs=109.9

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|++++|+.+|.+|+++.+..           ....+....++.++|.+|..+|+|++|+.++++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  209 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-----------EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK  209 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-----------STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----------ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            367888999999999999999999999999865432           002556778999999999999999999999999


Q ss_pred             HhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALK-----LE-PNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~-----l~-P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++.+..      ..+++++|.+|..+|++++|+.+|+++++     .+ |....++..++.+...+++.+++.+
T Consensus       210 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          210 AYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99886543      36899999999999999999999999999     45 6677788888888887776655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.19  E-value=1.8e-10  Score=92.90  Aligned_cols=132  Identities=15%  Similarity=0.171  Sum_probs=106.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+.+|++++++.+..            ........++.++|.++..+|++++|+.++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467889999999999999999999999999955321            01223456899999999999999999999999


Q ss_pred             HhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++.+.+..      ..+++.+|.++..+|++++|+..+++++++.+..      ..+...++.+...+++.+++.+
T Consensus        75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence            99876543      6789999999999999999999999999885422      3456677777777666655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.19  E-value=9.8e-12  Score=93.19  Aligned_cols=89  Identities=18%  Similarity=0.121  Sum_probs=53.3

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGD  295 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Al~~~~~al~~~p  295 (361)
                      ..|..++..|+|++|+..|+++++                  .+|.+.. ++.++|.+|..+|++++|+.+++++++++|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQ------------------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH------------------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            455556666666666666666665                  4455555 666666666666666666666666666666


Q ss_pred             CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          296 DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      ++..++++        +.+.+|+..|++++.++|++
T Consensus        67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           67 DSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             TSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            66655533        44555566666655555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.18  E-value=1.5e-10  Score=91.69  Aligned_cols=95  Identities=11%  Similarity=0.050  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .++.....+.++|.+++..|+|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+...+++.+++.+
T Consensus        84 ~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           84 GQCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhHHHHHH
Confidence            999988877766543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.17  E-value=2.6e-10  Score=110.88  Aligned_cols=143  Identities=10%  Similarity=0.007  Sum_probs=113.8

Q ss_pred             chHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098          204 ELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       204 ~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      ........+....+.+..+..+|+|++|+..|+++|++.......          .+|.....+.|||.+|..+|+|++|
T Consensus       301 ~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA  370 (490)
T 3n71_A          301 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD----------TNLYVLRLLSIASEVLSYLQAYEEA  370 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344555667777778888889999999999999999966543211          4677889999999999999999999


Q ss_pred             HHHHHHHhhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHHH
Q 018098          284 LLDTEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGI---KKELAVAKKKIHE  347 (361)
Q Consensus       284 l~~~~~al~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~---~~~l~~~~~~~~~  347 (361)
                      +..++++|++        +|+-...+.++|.+|..+|+|++|+..|++|+++     -|+++.+   ...+..++..++.
T Consensus       371 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          371 SHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999954        3445789999999999999999999999999985     4666544   4566677777777


Q ss_pred             HHHHHHHHH
Q 018098          348 RREQEKKQY  356 (361)
Q Consensus       348 ~~~~~k~~~  356 (361)
                      +++++...+
T Consensus       451 ~~~ae~~~~  459 (490)
T 3n71_A          451 FRQNEFMYH  459 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.16  E-value=2.4e-11  Score=117.52  Aligned_cols=113  Identities=15%  Similarity=0.165  Sum_probs=102.4

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN------  297 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~------  297 (361)
                      ..++|++|+..|.+++.                  ..+....++.++|.+++++++|++|+..|++||+++|.+      
T Consensus       246 ~l~~~~~A~~~~~~~~~------------------~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~  307 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTK------------------EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK  307 (457)
T ss_dssp             EEEEEECCCCGGGSCHH------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred             hhhhcccCcchhhcCHH------------------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH
Confidence            44567777777777776                  788999999999999999999999999999999999998      


Q ss_pred             ---------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          298 ---------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       298 ---------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                               ..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+.+.+++.+.
T Consensus       308 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~  373 (457)
T 1kt0_A          308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD  373 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence                     699999999999999999999999999999999999999999999998888776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=1e-10  Score=85.63  Aligned_cols=84  Identities=26%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++.++|++++|+..++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------------------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467889999999999999999999999998                  66777889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcC
Q 018098          291 MRDGDDNVKALFRQGQAYMALN  312 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~  312 (361)
                      ++++|.+..+++.+|.++..+|
T Consensus        70 ~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           70 LELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999988764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.16  E-value=2.1e-10  Score=113.41  Aligned_cols=125  Identities=14%  Similarity=0.024  Sum_probs=109.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+.+.|++++|+..|+++++                  ..|.+..+|++++.+|.+.|++++|+..++++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  433 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSST------------------MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA  433 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356777788888899999999999999887                  66777788999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +..+|.+..+++.+|.+|...|++++|+..|+++++++|.+..++..++.+..+.++.+++.+
T Consensus       434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999888887776655543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.8e-10  Score=102.35  Aligned_cols=134  Identities=13%  Similarity=0.078  Sum_probs=112.4

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+.+|++++++......          ...+....++.++|.++..+|++++|+..+++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35778899999999999999999999999984321100          01367788999999999999999999999999


Q ss_pred             Hhhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh----------------------------------
Q 018098          290 AMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL----------------------------------  327 (361)
Q Consensus       290 al~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l----------------------------------  327 (361)
                      ++.+        +|....+++.+|.++..+|++++|+..|++++++                                  
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            9998        7778899999999999999999999999999985                                  


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          328 ---------------EPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       328 ---------------~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                                     +|.+..++..++.+....++.+++.+
T Consensus       259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  299 (311)
T 3nf1_A          259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET  299 (311)
T ss_dssp             CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence                           35566778888888888877766554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.6e-10  Score=102.56  Aligned_cols=133  Identities=17%  Similarity=0.112  Sum_probs=112.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++.+......          ...+....++.++|.+|..+|++++|+..++++
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  137 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG----------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA  137 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC----------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC----------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            4677889999999999999999999999984421100          013677889999999999999999999999999


Q ss_pred             hhcC--------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKL--------EPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++.        |....+++.+|.++..+|++++|+..|++++++        +|....++..++.+....++.+++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9874        667889999999999999999999999999998        66677788888888888877766543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.3e-10  Score=110.51  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=97.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHH------HHHHHHHHHHHh---cCChHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKS------QIFTNSSACKLK---LGDLKG  282 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~nla~~~~~---l~~~~~  282 (361)
                      ...+..+|..++..|++++|+..|++++.                  ..|...      .++.++|.++..   +|++++
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  433 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIE------------------LENKLDGIYVGIAPLVGKATLLTRNPTVENFIE  433 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence            44556667777777777777777777776                  555543      389999999999   999999


Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+..+...
T Consensus       434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  495 (514)
T 2gw1_A          434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA  495 (514)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888877655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.13  E-value=1.7e-10  Score=97.97  Aligned_cols=96  Identities=15%  Similarity=0.083  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCch----------------hhHhHHHHHHHhcCCHHHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV----------------KALFRQGQAYMALNDVDAAVESFE  322 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~  322 (361)
                      ..+.....+.++|.+++..|+|++|+..+++++.+.|.++                .+++++|.++..+|++++|+.+|+
T Consensus        33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5667788899999999999999999999999999999887                899999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          323 KALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       323 ~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      ++++++|.+..++..++.+...+++.+++.+.
T Consensus       113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  144 (198)
T 2fbn_A          113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKEN  144 (198)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence            99999999999999999999888887765543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.12  E-value=1.9e-10  Score=104.15  Aligned_cols=107  Identities=10%  Similarity=0.077  Sum_probs=92.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++|+.+.....           ...+....+++|+|.+|.++|+|++|+.++++|
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            466799999999999999999999999998554320           134567789999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 018098          291 MRDGDDN------VKALFRQGQAYMALN-DVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~  328 (361)
                      +++.+..      +.+++++|.++..+| .+++|+.+|++|+.+.
T Consensus       223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9886544      789999999999999 5799999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=1.4e-10  Score=105.82  Aligned_cols=108  Identities=14%  Similarity=0.002  Sum_probs=73.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.++|..+...|+|++|+.+|++|+.+.....            .......++.++|.+|.. |++++|+.++++|
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG------------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT------------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            355677778888888888888888888887432110            012334567777777777 7777777777777


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      +.+.|..      ..++.++|.+|..+|+|++|+..|++++++.|.+
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            7766543      4667777777777777777777777777776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=4.5e-10  Score=111.04  Aligned_cols=142  Identities=16%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-----------cCCCCcc-----chhHHHHHHHHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEG-----KSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~nla~~~  274 (361)
                      ....+..+|..+.+.|++++|++.|+++++..+....           .......     ......|.+..+|.+++.+|
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3667778888888888888888888887763221000           0000000     00112334556677788888


Q ss_pred             HhcCChHHHHHHHHHHhhc------CCCc-hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRD------GDDN-VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~------~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      .+.|++++|+..+++++++      +|++ ..+|..+|.++...|++++|+..|+++++++|++..++..++.+....++
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            8888888888888888776      5554 67778888888888888888888888888888888888888777777666


Q ss_pred             HHHHH
Q 018098          348 RREQE  352 (361)
Q Consensus       348 ~~~~~  352 (361)
                      .+++.
T Consensus       566 ~~~A~  570 (597)
T 2xpi_A          566 PGLAI  570 (597)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.11  E-value=6.2e-10  Score=87.03  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       260 ~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      .+....++.++|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          340 VAKKKIHERREQEK  353 (361)
Q Consensus       340 ~~~~~~~~~~~~~k  353 (361)
                      .+...+++.+++.+
T Consensus        92 ~~~~~~~~~~~A~~  105 (133)
T 2lni_A           92 AALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99888877766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.11  E-value=5.2e-11  Score=90.21  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DGGIKKELAV  340 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~  340 (361)
                      ...++.++|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|.  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            44578899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHH-HHHHHHHH
Q 018098          341 AKKKI-HERREQEK  353 (361)
Q Consensus       341 ~~~~~-~~~~~~~k  353 (361)
                      +...+ ++.+++.+
T Consensus        85 ~~~~~~~~~~~A~~   98 (112)
T 2kck_A           85 ALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHTTCSSCSHHHHH
T ss_pred             HHHHHhCCHHHHHH
Confidence            98888 76655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.10  E-value=3.7e-10  Score=95.39  Aligned_cols=130  Identities=10%  Similarity=0.031  Sum_probs=105.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++.+....            ...+....++.++|.++..+|++++|+.++.++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS------------GDHTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            47788999999999999999999999999966432            134567789999999999999999999999999


Q ss_pred             hhc---CC----CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRD---GD----DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN--DG----GIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~---~p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~--~~----~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.+   .+    ....+++++|.++..+|++++|+..+++++++.+.  +.    .+...++.+....++.+++.
T Consensus        93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  167 (203)
T 3gw4_A           93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ  167 (203)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            988   33    34678999999999999999999999999987532  22    23466777766666655544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.10  E-value=4.1e-10  Score=92.41  Aligned_cols=93  Identities=18%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------------------CCCchhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD------------------GDDNVKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      ..+..+.++|..+++.|+|++|+..|++||.+                  +|.++.+|+++|.+|..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35678899999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          324 ALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       324 al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +++++|++..++..++.+...+++.+++...
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence            9999999999999999999998888776543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=3.5e-10  Score=103.23  Aligned_cols=108  Identities=13%  Similarity=0.047  Sum_probs=91.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+.. |+|++|+.+|++|+++.+..            ........++.++|.+|.++|+|++|+.+++++
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE------------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC------------CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46788899999998 99999999999999954311            011234678999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      +.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9987654      3588899999999999999999999999 999754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.10  E-value=2.8e-10  Score=103.77  Aligned_cols=120  Identities=11%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      +..+...|..+...|++++|+..|+++++                  +.|.+.. +|.+++.++.++|++++|+..+++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLA------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45677788888888888888888888887                  3333333 6777777777777777777777777


Q ss_pred             hhcCCCchhhHhHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYM-ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~-~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      ++++|.+..+|...+.... .+|++++|+..|+++++++|++..++..++.+....++.+
T Consensus       161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            7777766666655544432 2577777777777777777777777666666655544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.08  E-value=8.6e-10  Score=109.35  Aligned_cols=119  Identities=6%  Similarity=-0.086  Sum_probs=111.8

Q ss_pred             HhhhHHHHHhcchhHHhhh----------HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC
Q 018098          209 MNAVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  278 (361)
                      .+...+|..+|..+...++          |++|++.|.++++                  .+|.+..+|++++.+..+++
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------------------~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCS
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcc
Confidence            3346788889999998888          9999999999999                  89999999999999999999


Q ss_pred             --ChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          279 --DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       279 --~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                        +|++++..|+++|++||.|..||+.|+.++..++ .+++|+++++++++++|.|..+|..++.+...+
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence              7799999999999999999999999999999999 999999999999999999999999999998775

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.08  E-value=3.7e-10  Score=92.03  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ..|....++.++|.++..+|++++|+..++++
T Consensus        46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           46 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            366788999999999999999999999999                  67777889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHH--HHHHHhcCCHHHHHHHHHHHHHhC
Q 018098          291 MRDGDDNVKALFRQ--GQAYMALNDVDAAVESFEKALKLE  328 (361)
Q Consensus       291 l~~~p~~~ka~~~~--a~a~~~l~~~~~A~~~~~~al~l~  328 (361)
                      +.++|.+..++..+  +..+..+|++++|+..++++..+.
T Consensus       108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            99999998888554  445888999999999999886653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.08  E-value=3.9e-10  Score=102.00  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=100.5

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..++|++|+.+|++|+.+....   .         .......++.++|.+|..+|+|++|+.++++|+
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~---~---------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  182 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG---I---------DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC---S---------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc---c---------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455568988899999999999999999843211   0         011345689999999999999999999999999


Q ss_pred             h-------cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHH
Q 018098          292 R-------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~-------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~  347 (361)
                      +       ..+..+.+++++|.+|..+|+|++|+.++++++++.+..      ..++..++.+...+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            4       223346799999999999999999999999999987654      6788889988888874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.08  E-value=7.5e-10  Score=103.75  Aligned_cols=132  Identities=15%  Similarity=0.016  Sum_probs=104.3

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|++++|+.+|++|+++.+...           ...+....++.++|.+|..+|+|++|+.++++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  207 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA  207 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4577788888888888888888888888888553210           01345677889999999999999999999999


Q ss_pred             HhhcCC------CchhhHhHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALK-----LEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       290 al~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-----l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+++.+      ....+++++|.+|..+|++++|+.+|+++++     .+|....+...++.+...+++.+++.
T Consensus       208 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence            997643      1256888999999999999999999999999     67777778888888888777666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.07  E-value=6e-10  Score=104.46  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=105.6

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      +...|..++..|+|++|+.+|++|+.++...            ...+....++.++|.+|..+|++++|+.++.+|+++.
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  173 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFV------------KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY  173 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3449999999999999999999999965432            1245577899999999999999999999999999884


Q ss_pred             CC-------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHH
Q 018098          295 DD-------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       295 p~-------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +.       .+.++..+|.+|..+|++++|+..|++++++.|...      .++..++.+...+++.+++.+
T Consensus       174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            43       356999999999999999999999999999976443      477788888887777666544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.1e-09  Score=102.58  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..+...|+|++|+++|++|+++.+..            ...+....++.|+|.+|..+|++++|+.++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            357788899999999999999999999999965322            02335667899999999999999999999999


Q ss_pred             Hhh-----cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          290 AMR-----DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       290 al~-----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      ++.     .+|..+.+++.+|.++..+|++++|+..+++++++.+.
T Consensus       248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999     88888999999999999999999999999999999654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.07  E-value=4.9e-10  Score=101.36  Aligned_cols=128  Identities=16%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+...|..+...|+|++|+.+|++++.+.....            .......+++++|.+|..+|+|++|+.++++|+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34455677777888888888888888887432110            011245689999999999999999999999999


Q ss_pred             ---hcCCCc----hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHH
Q 018098          292 ---RDGDDN----VKALFRQGQAYMALNDVDAAVESFEKALKLEPN------DGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       292 ---~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~~~  351 (361)
                         +..|.+    +.+++++|.+|..+|+|++|+.+|++++++.+.      -..++..++.+...+++.+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence               445553    379999999999999999999999999998643      156778888888877766555

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.07  E-value=1e-09  Score=81.96  Aligned_cols=68  Identities=22%  Similarity=0.371  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCchh-hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          268 TNSSACKLKLGDLKGALLDTEFAMRDGDDNVK-ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       268 ~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      +++|.++...|+|++|+..++++++++|+++. +++.+|.++..+|++++|+..|+++++++|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            57899999999999999999999999999999 999999999999999999999999999999998877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=5.1e-10  Score=105.38  Aligned_cols=124  Identities=15%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..++..|+|++|+..|+++++..+.              .......++.++|.+|..+|++++|+.++++
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--------------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45778889999999999999999999999983210              1223446899999999999999999999999


Q ss_pred             Hhhc------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 018098          290 AMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL------EPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       290 al~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ++.+      +|....+++.+|.+|..+|++++|+..|++++++      .|....++..++.+...+++
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9988      6778999999999999999999999999999999      45556688888888888777

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.06  E-value=2.1e-09  Score=81.84  Aligned_cols=91  Identities=20%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      .+..+.++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|.+..++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH
Q 018098          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      ..+++.+++.+
T Consensus        83 ~~~~~~~~A~~   93 (118)
T 1elw_A           83 EFLNRFEEAKR   93 (118)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHHhhHHHHHH
Confidence            88877766544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.06  E-value=2.6e-09  Score=82.84  Aligned_cols=95  Identities=15%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .++....++..+|.++...+++++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|.+..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQEK  353 (361)
Q Consensus       339 ~~~~~~~~~~~~~~k  353 (361)
                      +.+...+++.+++.+
T Consensus        87 ~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           87 GLALSSLNKHVEAVA  101 (131)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999888877766544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=7.6e-10  Score=89.36  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcC-C-Cchhh
Q 018098          226 QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG---DLKGALLDTEFAMRDG-D-DNVKA  300 (361)
Q Consensus       226 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~Al~~~~~al~~~-p-~~~ka  300 (361)
                      .....+.+.|.+.+.                  ..+.+..+.+++|.|+.+.+   +.++++..++.+++.+ | ++..+
T Consensus        12 ~~l~~~~~~y~~e~~------------------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~   73 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDY   73 (152)
T ss_dssp             HHHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHH
Confidence            455667778888776                  34456788999999999988   7789999999999999 7 67999


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      +|++|.+++.+++|++|+.+++++++++|+|..+......+..++.+
T Consensus        74 lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           74 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888777643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=3.4e-09  Score=94.33  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~  287 (361)
                      +..+..+|..++..+++++|+.+|+++++                    +....++.++|.+|..    .+++++|+.++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~   65 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFY   65 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHH
Confidence            45666777777777777777777777765                    1122345555555555    55555555555


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      +++++++  ++.+++.+|.+|..    .+++++|+..|+++++++  +..++..++.+...
T Consensus        66 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           66 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            5555553  45555555555555    555555555555555542  44455555554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.01  E-value=1.3e-09  Score=101.80  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=107.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++.+..            ...+....++.++|.+|..+|++++|+.+++++
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            35678889999999999999999999999855421            013345668999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.+.|..      ..+++.+|.++..+|++++|+..|++++++.+..      ..++..++.+...+++.+++.
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9887765      7899999999999999999999999999986643      557777788777776665544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.01  E-value=2.6e-09  Score=83.43  Aligned_cols=88  Identities=19%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCch---hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV---KALFRQGQAYMALNDVDAAVESFEKALKLEPND---GGIKKELA  339 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~  339 (361)
                      +++++|.+++..|+|++|+..++++++.+|++.   .+++.+|.++..+|++++|+..|+++++++|++   +.++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            468899999999999999999999999999998   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          340 VAKKKIHERREQEK  353 (361)
Q Consensus       340 ~~~~~~~~~~~~~k  353 (361)
                      .+...+++.+++.+
T Consensus        84 ~~~~~~g~~~~A~~   97 (129)
T 2xev_A           84 LSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99888777766553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.2e-09  Score=85.63  Aligned_cols=95  Identities=17%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      ..+.....+..+|.++...|+|++|+..++++++++|++   ..+++++|.++..+|++++|+..|+++++++|.+..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            345567789999999999999999999999999999998   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018098          336 KELAVAKKKIHERREQEK  353 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~k  353 (361)
                      ..++.+...+++.+++.+
T Consensus       103 ~~~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVL  120 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            999999988887766554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.00  E-value=1.7e-10  Score=107.01  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .+.++|..+++.|+|++|+.+|+++++                  ++|.+..+|+++|.+|..+|+|++|+.++++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLT------------------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            778999999999999999999999999                  78888999999999999999999999999999999


Q ss_pred             CCCchhhHhHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          294 GDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       294 ~p~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      +|++..++..++.+ ....++.+++...|.+++.+.|+++..
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            99999999999988 445678888999999999999987643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=1.2e-09  Score=98.67  Aligned_cols=123  Identities=16%  Similarity=0.109  Sum_probs=102.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..++..|+|++|+..|+++++..+.              .......++.++|.++..+|++++|+..++++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3557788999999999999999999999983210              12234678999999999999999999999999


Q ss_pred             hhc------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 018098          291 MRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG------GIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~  347 (361)
                      +.+      .|....+++.+|.++..+|++++|+..+++++++.|...      .++..++.+...+++
T Consensus        70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            987      556688999999999999999999999999999876542      367777777777766

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=5.3e-09  Score=95.26  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhh-c
Q 018098          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDL-------KGALLDTEFAMR-D  293 (361)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~-------~~Al~~~~~al~-~  293 (361)
                      ++|+..|++++.                  .+|.+..+|+++|..+..       +|++       ++|+..+++|++ +
T Consensus        33 ~~a~~~~~~al~------------------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~   94 (308)
T 2ond_A           33 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL   94 (308)
T ss_dssp             HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence            789999999999                  899999999999999874       5886       999999999999 7


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG-IKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~~~~~~~~  352 (361)
                      +|++..+|+.+|.++..+|++++|+..|+++++++|.+.. ++..++.+..+.++.+++.
T Consensus        95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999999999999999886 8999999887777666543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.99  E-value=9.9e-10  Score=103.35  Aligned_cols=130  Identities=16%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++.+..            ........++.++|.+|..+|++++|+.+++++
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF------------GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            34578889999999999999999999999954321            012233458999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.+.+..      ..+++.+|.++..+|++++|+.+|++++++.+..      ..++..++.+...+++.+++.
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  363 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL  363 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence            9887754      7899999999999999999999999999986542      346777777777776665544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.98  E-value=2.6e-09  Score=99.75  Aligned_cols=130  Identities=18%  Similarity=0.225  Sum_probs=108.6

Q ss_pred             hhHHHHHhcchhHHhhh--------------------HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQD--------------------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNS  270 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~--------------------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl  270 (361)
                      .+..+..+|..++..|+                    |++|+..|.+++.+....            ...+....++.++
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~l  193 (406)
T 3sf4_A          126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL------------GDRAAQGRAFGNL  193 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc------------cCcHHHHHHHHHH
Confidence            36688999999999999                    999999999999855322            1245677899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCchh------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 018098          271 SACKLKLGDLKGALLDTEFAMRDGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKEL  338 (361)
Q Consensus       271 a~~~~~l~~~~~Al~~~~~al~~~p~~~k------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l  338 (361)
                      |.+|..+|++++|+..+++++.+.|....      +++.+|.++..+|++++|+..|++++++.|..      ..++..+
T Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  273 (406)
T 3sf4_A          194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  273 (406)
T ss_dssp             HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence            99999999999999999999988766544      99999999999999999999999999998765      5567777


Q ss_pred             HHHHHHHHHHHHHH
Q 018098          339 AVAKKKIHERREQE  352 (361)
Q Consensus       339 ~~~~~~~~~~~~~~  352 (361)
                      +.+....++.+++.
T Consensus       274 a~~~~~~g~~~~A~  287 (406)
T 3sf4_A          274 GNTYTLLQDYEKAI  287 (406)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHhCcHHHHH
Confidence            77777666655544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.98  E-value=2.8e-09  Score=85.64  Aligned_cols=108  Identities=20%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+.+|++++++.+..            ...+....++.++|.++..+|++++|+..++++
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35678899999999999999999999999955422            012345678999999999999999999999999


Q ss_pred             hhcCC------CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          291 MRDGD------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      +.+.+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            97743      23678999999999999999999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.98  E-value=1.3e-10  Score=112.92  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=91.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+++.|+|++|+..|++|++                  ++|....+++++|.+|..+|++++|+..+++|
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIE------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            477889999999999999999999999999                  67778889999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 018098          291 MRDGDDNVKALFRQGQA--YMALNDVDAAVESFE-----------KALKLEPND  331 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a--~~~l~~~~~A~~~~~-----------~al~l~P~~  331 (361)
                      ++++|++..++..++.+  +..+|++++|++.++           ++++++|..
T Consensus       101 l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          101 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999998  889999999999999           888888763

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=1.5e-09  Score=99.10  Aligned_cols=122  Identities=7%  Similarity=-0.073  Sum_probs=110.6

Q ss_pred             HhhhHHHHHhcchh----HHh---hhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChH
Q 018098          209 MNAVDSIKVFGNEH----YKK---QDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLK  281 (361)
Q Consensus       209 ~~~a~~~~~~G~~~----~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  281 (361)
                      ++...++..++..+    ...   +++++++..+.++++                  .+|.+..+|.+++.+..+++.++
T Consensus       100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~------------------~~pkny~aW~~R~~vl~~l~~~~  161 (306)
T 3dra_A          100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS------------------SDPKNHHVWSYRKWLVDTFDLHN  161 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCTT
T ss_pred             cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhcccC
Confidence            34566777778777    555   789999999999999                  89999999999999999999999


Q ss_pred             --HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          282 --GALLDTEFAMRDGDDNVKALFRQGQAYMALND------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       282 --~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                        ++++.++++|+.+|.|..||..|+.++..+++      ++++++++++++.++|+|..++..+.-+....+..
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~  236 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS  236 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence              99999999999999999999999999999998      99999999999999999999999999887776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=1.2e-09  Score=104.79  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=98.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDLKGALLDTE  288 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~~~Al~~~~  288 (361)
                      .+..+.++|..++..|+|++|+.+|++++.+.+.....          ..+....++.++|.++.++  ++|++|+.+|+
T Consensus        93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~  162 (472)
T 4g1t_A           93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP----------YRIESPELDCEEGWTRLKCGGNQNERAKVCFE  162 (472)
T ss_dssp             THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS----------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc----------cchhhHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            35667889999999999999999999999865533111          1112345677888777765  46999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMA---LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      +|++++|+++.+++.+|.++..   .+++++|+..|+++++++|++..++..++.....
T Consensus       163 kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK  221 (472)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence            9999999999999999988654   4677889999999999999998888777755443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.97  E-value=5.7e-09  Score=80.09  Aligned_cols=91  Identities=27%  Similarity=0.341  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      ...++.++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|.+..++..++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 018098          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      ...++.+++.+
T Consensus        88 ~~~~~~~~A~~   98 (125)
T 1na0_A           88 YKQGDYDEAIE   98 (125)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHhcCHHHHHH
Confidence            87776655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=2.3e-08  Score=90.20  Aligned_cols=132  Identities=14%  Similarity=0.020  Sum_probs=105.8

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .....+...+..++..|+|++|++.|.+++...+.            ..........+.++|.++...|++++|+.++++
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY------------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK  140 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC------------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC------------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            34567788899999999999999999999984321            112334556678899999999999999999999


Q ss_pred             HhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKAL---KLEPNDG----GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       290 al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al---~l~P~~~----~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+.+.+..      ..+++.+|.+|..+|++++|+.+|++++   +..|++.    .++..++.+...+++.+++..
T Consensus       141 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~  217 (293)
T 2qfc_A          141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence            99876544      5689999999999999999999999999   5566654    577788888777777666543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.97  E-value=1.8e-09  Score=97.28  Aligned_cols=92  Identities=11%  Similarity=0.034  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      ....+.++|.++...|+|++|+..+++++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018098          343 KKIHERREQEKK  354 (361)
Q Consensus       343 ~~~~~~~~~~k~  354 (361)
                      ..+++.+++.+.
T Consensus        83 ~~~g~~~~A~~~   94 (281)
T 2c2l_A           83 LEMESYDEAIAN   94 (281)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHH
Confidence            888877766543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.97  E-value=1.9e-09  Score=97.32  Aligned_cols=131  Identities=15%  Similarity=0.182  Sum_probs=107.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|++++|+..|++++++.+..            ...+....++.++|.++..+|++++|+..++++
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF------------GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35678889999999999999999999999854321            013344568999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +.+.+..      ..+++.+|.++..+|++++|+..+++++++.|..      ..++..++.+...+++.+++.+
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            9887665      7899999999999999999999999999987643      3467778888777777665544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.96  E-value=3.1e-09  Score=82.45  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-------GGIK  335 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-------~~~~  335 (361)
                      ...++.++|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++++.|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999877       8888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 018098          336 KELAVAKKKIHERREQEK  353 (361)
Q Consensus       336 ~~l~~~~~~~~~~~~~~k  353 (361)
                      ..++.+...+++.+++.+
T Consensus        83 ~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHH
Confidence            888888888777665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.95  E-value=7.1e-09  Score=92.19  Aligned_cols=110  Identities=23%  Similarity=0.109  Sum_probs=78.2

Q ss_pred             hhHHHHHhcchhHH----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHH
Q 018098          211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG  282 (361)
Q Consensus       211 ~a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~  282 (361)
                      .+..+..+|..+..    .+++++|+.+|+++++                  ..  ...+++++|.+|..    .+++++
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------------------~~--~~~a~~~lg~~~~~g~~~~~~~~~   96 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD------------------LN--YSNGCHLLGNLYYSGQGVSQNTNK   96 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------TT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH------------------CC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence            35667888888888    8999999999999887                  21  34566777777777    777777


Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |+.+++++++.+  ++.+++.+|.+|..    .+++++|+.+|+++++++  +..+...++.+...
T Consensus        97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            777777777664  66777777777777    777777777777777665  45555556555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.95  E-value=7.2e-09  Score=99.13  Aligned_cols=127  Identities=12%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al  284 (361)
                      .......+....+.+......|+|++|+..|+++|++.......          .+|.....+.|+|.+|..+|+|++|+
T Consensus       291 v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~~~nLa~~y~~~g~~~eA~  360 (433)
T 3qww_A          291 IRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED----------SNVYMLHMMYQAMGVCLYMQDWEGAL  360 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCT----------TSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccCh----------hchHHHHHHHHHHHHHHhhcCHHHHH
Confidence            33334444455555555556789999999999999966543211          46778899999999999999999999


Q ss_pred             HHHHHHhhc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 018098          285 LDTEFAMRD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVA  341 (361)
Q Consensus       285 ~~~~~al~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~l~~~  341 (361)
                      .+++++|++        +|+-...++++|.+|..+|+|++|+..|++|+++     -|+++.+......+
T Consensus       361 ~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          361 KYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            999999954        4455789999999999999999999999999986     57788777655544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=3.8e-09  Score=90.97  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc--------cccccCCC--Cccc-----hhHHHHHHHHHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--------ICWEKEGI--DEGK-----SSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--------~~~~~~~~--~~~~-----~~~~~~~~~~~~~nla~~~  274 (361)
                      ..+.++..+|..++..+++++|+.+|+++++.-.        .+......  +.+.     ....++....+++++|.+|
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y   95 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVL   95 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3467778888888888888888888888776311        00111100  1110     0123456677899999999


Q ss_pred             Hh----cCChHHHHHHHHHHhhcCC--CchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          275 LK----LGDLKGALLDTEFAMRDGD--DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       275 ~~----l~~~~~Al~~~~~al~~~p--~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      ..    .+++++|+.+++++++.+|  .++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...++.+...
T Consensus        96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            88    8899999999999999998  458999999999998    88999999999999998 6677788888887654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.94  E-value=5.8e-09  Score=93.51  Aligned_cols=109  Identities=11%  Similarity=-0.027  Sum_probs=92.6

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      .++.+|..+++.++|++|+.+|++++...                 ++. ...+++++|.++..+|++++|+.++++++.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-----------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-----------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC-----------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            67888999999999999999998777611                 222 345889999999999999999999999986


Q ss_pred             cC--CC-chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 018098          293 DG--DD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAV  340 (361)
Q Consensus       293 ~~--p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~  340 (361)
                      ..  |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+...|..
T Consensus       200 g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          200 SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            54  65 6789999999999999999999999999999998 877776643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.93  E-value=2.1e-08  Score=92.18  Aligned_cols=117  Identities=6%  Similarity=-0.093  Sum_probs=106.2

Q ss_pred             hhHHHHHhcchhHHhhh----------HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-
Q 018098          211 AVDSIKVFGNEHYKKQD----------YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-  279 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~----------y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-  279 (361)
                      ...++..++..+...+.          +++++..+.+++.                  .+|.+..+|++++.+...+++ 
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHCSSC
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHhccCcc
Confidence            35667777777766555          7899999999998                  899999999999999999994 


Q ss_pred             -hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          280 -LKGALLDTEFAMRDGDDNVKALFRQGQAYMALND-VDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       280 -~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                       +++++..|+++|+++|.|..||+.++.+...++. +++++++++++++.+|.|..++..+..+...+
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence             9999999999999999999999999999999999 69999999999999999999999999988777

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.93  E-value=5.7e-09  Score=103.44  Aligned_cols=120  Identities=9%  Similarity=-0.001  Sum_probs=104.0

Q ss_pred             hHHhhhH-HHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHH
Q 018098          222 HYKKQDY-KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFA  290 (361)
Q Consensus       222 ~~~~g~y-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Al~~~~~a  290 (361)
                      ..+.++| ++|++.|.+++.                  .+|....+|++++.+...+++          +++++..++++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~------------------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~   99 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC   99 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHH------------------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH
Confidence            3445555 568999999999                  899999999999999999998          99999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018098          291 MRDGDDNVKALFRQGQAYMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKM  359 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  359 (361)
                      |+.+|++..+|+.|+.++..++  ++++|+++++++++++|.|-.+|...+-+...++...+++-+.+.++
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            9999999999999999999999  77999999999999999999999999998887762223344444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.92  E-value=9.3e-10  Score=89.75  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             HHHhhhHHHHHhcchhHHhhhH----------HHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDY----------KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK  276 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  276 (361)
                      .....++.+.+.|..+...+++          ++|+..|++||+                  ++|....+|+|+|.+|..
T Consensus        31 l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~------------------ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           31 SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH------------------hCcCcHHHHHHHHHHHHH
Confidence            3344688899999999998876          599999999999                  999999999999999999


Q ss_pred             cC-----------ChHHHHHHHHHHhhcCCCch
Q 018098          277 LG-----------DLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       277 l~-----------~~~~Al~~~~~al~~~p~~~  298 (361)
                      +|           ++++|+.+|++||+++|++.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            85           89999999999999999874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.90  E-value=6.5e-09  Score=94.80  Aligned_cols=118  Identities=7%  Similarity=-0.160  Sum_probs=108.9

Q ss_pred             hhHHHHHhcchhHHhh--hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHH----Hhc---CChH
Q 018098          211 AVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACK----LKL---GDLK  281 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~~~  281 (361)
                      ...++..+|..+...+  ++++|+..+.+++.                  .+|.+..+|+.++.+.    ..+   ++++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------------------~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIAL------------------DNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------------------HCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHH------------------HCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            4677888898988888  99999999999998                  8899999999999999    777   8999


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMALNDVD--AAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~--~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +++..|+++|+.+|.|..+|+.|+.++..++.++  ++++.++++++.+|.|-.++.....+...+.
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999  9999999999999999999998888866654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=3.5e-09  Score=91.20  Aligned_cols=109  Identities=14%  Similarity=0.104  Sum_probs=86.1

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHhhcCC
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG----DLKGALLDTEFAMRDGD  295 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----~~~~Al~~~~~al~~~p  295 (361)
                      ..++..|..-.-...|.+|+.+....             .+..+..+++++|.+|.. +    ++++|+.+++++++  +
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a-------------~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~   82 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKA-------------AAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--A   82 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH-------------HHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--C
Confidence            34445555544455677888766554             455667889999999988 7    89999999999965  4


Q ss_pred             CchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 018098          296 DNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN--DGGIKKELAVAKKK  344 (361)
Q Consensus       296 ~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~  344 (361)
                      .++.+++++|.+|..    .+++++|+.+|+++++..|.  ++.+...|+.+...
T Consensus        83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            688999999999988    88999999999999999873  47888888888766

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.87  E-value=2.2e-08  Score=92.53  Aligned_cols=111  Identities=11%  Similarity=0.002  Sum_probs=101.1

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCchh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al~~~p~~~k  299 (361)
                      ...+.+..++|+..+.++|.                  ++|.+..+|+.++.+...++ .+++++..++++|..+|++..
T Consensus        63 ~~~~~e~se~AL~lt~~~L~------------------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~  124 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVR------------------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ  124 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHhCCCCHHHHHHHHHHHH------------------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH
Confidence            33344556789999999999                  89999999999999999999 599999999999999999999


Q ss_pred             hHhHHHHHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMAL-N-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       300 a~~~~a~a~~~l-~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      +|+.|+.++..+ + +++++++.++++++++|.|-.++....-+...+....
T Consensus       125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            999999999998 8 9999999999999999999999999998888777655

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.87  E-value=2.3e-08  Score=95.57  Aligned_cols=121  Identities=11%  Similarity=0.063  Sum_probs=96.1

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +......-..+.++|+|++|+..|++++++......          ..+|.....+.|+|.+|..+|+|++|+.+++++|
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg----------~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP----------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC----------TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC----------ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            334444455677889999999999999985433211          2467788999999999999999999999999999


Q ss_pred             hc--------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Q 018098          292 RD--------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL-----EPNDGGIKKELAVAK  342 (361)
Q Consensus       292 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~P~~~~~~~~l~~~~  342 (361)
                      .+        +|.-...++++|.+|..+|++++|+..|++|+++     -|+++.+...+..+.
T Consensus       357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            44        3445789999999999999999999999999986     577776665544443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.86  E-value=2.8e-09  Score=82.45  Aligned_cols=76  Identities=8%  Similarity=0.030  Sum_probs=70.0

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      ...+..+..+|..++..|+|++|+..|+++++                  ..|.+..++.++|.|+..+|++++|+..++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34578899999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHhhcCCCchhhHh
Q 018098          289 FAMRDGDDNVKALF  302 (361)
Q Consensus       289 ~al~~~p~~~ka~~  302 (361)
                      +++...|+++....
T Consensus        86 ~al~~~p~~~~~~~   99 (117)
T 3k9i_A           86 KIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHCCCHHHHH
T ss_pred             HHHHhCCCcHHHHH
Confidence            99999999876643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.84  E-value=1.5e-08  Score=85.37  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+..+|..+...|+|++|+.+|.+++++......           .......++.++|.++..+|++++|+.++++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE-----------DPLAASANAYEVATVALHFGDLAGARQEYEK  132 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc-----------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            35778899999999999999999999999996532100           1125567899999999999999999999999


Q ss_pred             HhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          290 AMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       290 al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ++.+.+..      ..++..+|.++..+|++++|+..+++++++..
T Consensus       133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            99764321      45678999999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=1.3e-08  Score=84.59  Aligned_cols=119  Identities=8%  Similarity=-0.054  Sum_probs=94.6

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhc--c-------c--cccCCCCcc-----chhHHHHHHHHHHHHHH
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLD--I-------C--WEKEGIDEG-----KSSSLRKTKSQIFTNSS  271 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~--~-------~--~~~~~~~~~-----~~~~~~~~~~~~~~nla  271 (361)
                      ....+..+..+|..+...|++++|+..|++++...+  .       +  ........+     .....+|.+..+++++|
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344578899999999999999999999999876432  0       0  000000000     01234677789999999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          272 ACKLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       272 ~~~~~l~~~~~Al~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      .++..+|++++|+..++++++++|+.  ..+++.+|.++..+|+.++|+..|++++.
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999986  56999999999999999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.82  E-value=1.6e-08  Score=94.92  Aligned_cols=93  Identities=16%  Similarity=0.144  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh----------------cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMR----------------DGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~----------------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  325 (361)
                      .....+.++|.++++.++|++|+..|++||+                ++|.+..+|+++|.+|..+|+|++|+.+|++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4556789999999999999999999999998                888899999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          326 KLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       326 ~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      +++|++..++..++.+...+++.+++.+.
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~  329 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALAD  329 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999999999988887766543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.80  E-value=3.6e-08  Score=90.61  Aligned_cols=115  Identities=10%  Similarity=-0.037  Sum_probs=103.4

Q ss_pred             HhhhHHHHHhcchhHHhh--hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQ--DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALL  285 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g--~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Al~  285 (361)
                      ++...++..++..+...+  .|++++..+.++++                  .+|.+..+|.+++.+...++. ++++++
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------------------~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE------------------ADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            345677788888888877  49999999999999                  999999999999999999999 699999


Q ss_pred             HHHHHhhcCCCchhhHhHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          286 DTEFAMRDGDDNVKALFRQGQAYMAL--------------NDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~a~a~~~l--------------~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +++++|+.+|.|..||..++.++..+              +.++++++++.+++.++|+|..++..+.-+
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999888              569999999999999999999999755443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.78  E-value=5.5e-08  Score=73.81  Aligned_cols=83  Identities=20%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDG-------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKE  337 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~-------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~  337 (361)
                      .-++.+|..++..++|..|+.++++|++..       +..+.++..+|.++..+|+++.|+..++++++++|+++.+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            346789999999999999999999999753       4568899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHH
Q 018098          338 LAVAKKKIHE  347 (361)
Q Consensus       338 l~~~~~~~~~  347 (361)
                      +..++..+..
T Consensus        86 ~~~~~~~~~~   95 (104)
T 2v5f_A           86 LKYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8866665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.78  E-value=2.7e-08  Score=75.56  Aligned_cols=83  Identities=23%  Similarity=0.156  Sum_probs=69.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+++.++|..|+..|++|++....-    . .      .......++.++|.|+.++|+++.|+..+++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~----~-~------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEG----E-I------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----C-C------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc----C-C------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5678899999999999999999999999843210    0 0      012456789999999999999999999999999


Q ss_pred             hcCCCchhhHhHHH
Q 018098          292 RDGDDNVKALFRQG  305 (361)
Q Consensus       292 ~~~p~~~ka~~~~a  305 (361)
                      +++|++..++.+++
T Consensus        74 ~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           74 ELDPEHQRANGNLK   87 (104)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             hcCCCCHHHHhhHH
Confidence            99999999988876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.78  E-value=1.7e-08  Score=93.30  Aligned_cols=118  Identities=6%  Similarity=-0.078  Sum_probs=109.2

Q ss_pred             hhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL-G-DLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~Al~~~  287 (361)
                      ...++..++..+...+ .+++++..+.++|.                  .+|.+..+|+.++.+...+ + ++++++..|
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~------------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV------------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            4677888899998888 59999999999998                  8889999999999999998 8 999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVD--------AAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~--------~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +++|+++|.|..||+.|+.++..++.++        +++++++++++.+|.|-.++.....+...+.
T Consensus       149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999888        9999999999999999999999988866654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.77  E-value=2.7e-08  Score=74.01  Aligned_cols=73  Identities=12%  Similarity=0.001  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          261 KTKSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~---~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      |.++.++..+|.+++..++   .++|...+++||+++|+++++++.+|.+++..|+|++|+..++++++.+|.++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            3456788889999876665   799999999999999999999999999999999999999999999999998544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=2.3e-08  Score=89.62  Aligned_cols=123  Identities=13%  Similarity=-0.019  Sum_probs=103.2

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .......+..+...|+|++|.+.|..++.                  ..|... +.+.+|.++++.++|++|+..++.++
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~------------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPV------------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCC------------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence            34566678889999999999999999887                  566677 88999999999999999999999998


Q ss_pred             hcCCCc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLE--PN-DGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       292 ~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ...+..  ..+++.+|.++..+|++++|+..|++++.-.  |. ..+++..++.+..++.+.+++..
T Consensus       163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            864222  4689999999999999999999999998654  55 56788899999888887766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.76  E-value=4.7e-09  Score=79.00  Aligned_cols=69  Identities=10%  Similarity=0.068  Sum_probs=64.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|+++++                  ++|....+|.++|.+|..+|++++|+..++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE------------------TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467899999999999999999999999999                  88888899999999999999999999999999


Q ss_pred             hhcCCCc
Q 018098          291 MRDGDDN  297 (361)
Q Consensus       291 l~~~p~~  297 (361)
                      +++.|.+
T Consensus        68 l~l~~~~   74 (100)
T 3ma5_A           68 IEVAREE   74 (100)
T ss_dssp             HHHHHHH
T ss_pred             HhhhhcC
Confidence            9997754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.70  E-value=3.3e-08  Score=96.92  Aligned_cols=120  Identities=12%  Similarity=0.088  Sum_probs=87.5

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTK-SQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      .+..+...|..+.+.|++++|...|++++++                  .|.+ ..+|.+++.++.++|++++|+..+++
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3566778888888999999999999999982                  2322 24677777777777777777777777


Q ss_pred             HhhcCCCchhhHhHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQA-YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      |++..|.....+...+.. +..+|++++|...|+++++.+|+++.++..++.+....++.
T Consensus       382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence            777777766666655544 33577777777777777777777777777777665554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.69  E-value=2.9e-08  Score=89.55  Aligned_cols=117  Identities=9%  Similarity=-0.068  Sum_probs=93.2

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc-----------cccCCCCcc-----chhHHHHHHHHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-----------WEKEGIDEG-----KSSSLRKTKSQIFTNSSAC  273 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~nla~~  273 (361)
                      ..+..+..+|..+...|++++|+..|++++..-+..           ........+     .....+|.+..+++++|.+
T Consensus       149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~  228 (287)
T 3qou_A          149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ  228 (287)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence            356778888999999999999998888876532210           000001100     0123578888999999999


Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          274 KLKLGDLKGALLDTEFAMRDGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       274 ~~~l~~~~~Al~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      +...|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|+..|++++.
T Consensus       229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999998  89999999999999999999999999875

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=1.3e-07  Score=87.94  Aligned_cols=129  Identities=12%  Similarity=-0.024  Sum_probs=98.3

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..++..|+|++|+..|++++.+.+..            ........++.++|.++..+|++++|+..++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  119 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------------DVWHYALWSLIQQSEILFAQGFLQTAWETQEKA  119 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35567888999999999999999999999854321            011233556789999999999999999999999


Q ss_pred             hhcC--------CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDG--------DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND-----GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       291 l~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~-----~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+.        |....++..+|.++..+|++++|...+++++.+.|..     ...+..++.+....++..++
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9764        3456778889999999999999999999999988752     23455666666655555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.63  E-value=3.3e-07  Score=71.27  Aligned_cols=105  Identities=12%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH---HHHHHHHHhhcC-C-Cchh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG---ALLDTEFAMRDG-D-DNVK  299 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---Al~~~~~al~~~-p-~~~k  299 (361)
                      ......+...|.+++.                  ..+....+.+++|.|+.+-.+...   +|..++..++.+ | ..-.
T Consensus        14 ~~~l~~~~~~y~~e~~------------------~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd   75 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD   75 (126)
T ss_dssp             HHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc------------------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHH
Confidence            4455667777877765                  344556788999999999887666   999999999988 5 5789


Q ss_pred             hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       300 a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ++|.+|.+++.+|+|++|+.+++.+++++|+|..+..+...+..++.+
T Consensus        76 ~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           76 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998888877653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.63  E-value=1.8e-07  Score=74.82  Aligned_cols=98  Identities=17%  Similarity=0.069  Sum_probs=83.4

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhhc
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRD  293 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~~~al~~  293 (361)
                      +|..+...+.+++|+.+|++|.+                  .  .+..+++++|.+|..    .+++++|+.++++|.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~------------------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACE------------------L--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHc------------------C--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            78888888888999999999987                  2  456789999999998    89999999999999987


Q ss_pred             CCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                        .++.+++++|.+|..    .+++++|+.+|++|.++.  ++.+...++
T Consensus        91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence              579999999999999    899999999999999884  555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=4.8e-07  Score=88.58  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHhh-c
Q 018098          229 KMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-------LGDLK-------GALLDTEFAMR-D  293 (361)
Q Consensus       229 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~Al~~~~~al~-~  293 (361)
                      ..|+..|++|+.                  ..|....+|.++|..+..       +|+++       +|+..+++|++ +
T Consensus       255 ~~a~~~y~~al~------------------~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~  316 (530)
T 2ooe_A          255 KRVMFAYEQCLL------------------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL  316 (530)
T ss_dssp             HHHHHHHHHHHH------------------HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence            578899999999                  888899999999999986       79987       99999999997 8


Q ss_pred             CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHH
Q 018098          294 GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG-GIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       294 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~  352 (361)
                      .|++..+|+.+|..+..+|++++|...|+++++++|.+. .++..++.+..+.++.+++.
T Consensus       317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999999999999999986 58888888877777665543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.62  E-value=1.4e-07  Score=72.29  Aligned_cols=73  Identities=22%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.+...+++..++..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999999888877766543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.60  E-value=6.8e-08  Score=93.81  Aligned_cols=116  Identities=10%  Similarity=-0.029  Sum_probs=94.9

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+.++|..+..+|+|++|+.+|+++|.+.......          .+|.....++|||.+|..+|+|++|+..+++
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~  418 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICK  418 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            357888999999999999999999999999966543222          4678889999999999999999999999999


Q ss_pred             Hhhc-----CCC---chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          290 AMRD-----GDD---NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       290 al~~-----~p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      ||++     .|+   ..+..-.+++++..++.|++|...|.++.+-.-+|+.++
T Consensus       419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~  472 (490)
T 3n71_A          419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ  472 (490)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            9954     444   467778899999999999999999999877554555554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=2.2e-07  Score=90.12  Aligned_cols=80  Identities=18%  Similarity=0.039  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---
Q 018098          262 TKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPN---  330 (361)
Q Consensus       262 ~~~~~~~nla~~~~~----l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~---  330 (361)
                      .+..+++++|.+|..    .+++++|+.++++|++..  ++.+++++|.+|..    .+++++|+.+|+++++.+|+   
T Consensus       361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  438 (490)
T 2xm6_A          361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG  438 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence            346789999999999    899999999999999875  68999999999998    89999999999999999954   


Q ss_pred             CHHHHHHHHHHHH
Q 018098          331 DGGIKKELAVAKK  343 (361)
Q Consensus       331 ~~~~~~~l~~~~~  343 (361)
                      +..+...++.+..
T Consensus       439 ~~~a~~~l~~~~~  451 (490)
T 2xm6_A          439 TENRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHHHTTSCH
T ss_pred             CHHHHHHHHhcCH
Confidence            7777777776644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.56  E-value=4.5e-07  Score=84.16  Aligned_cols=132  Identities=15%  Similarity=-0.009  Sum_probs=103.0

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .-.+..+...|..++..|++++|+..+++++...+..             .......++.++|.++...|++++|+..++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   77 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQ   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3356778888999999999999999999999843210             112345678999999999999999999999


Q ss_pred             HHhhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEP--------NDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--------~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++.+.|..      ..++..+|.++..+|++++|+..+++++++.+        ....+...++.+.....+.+++..
T Consensus        78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            999876644      34578899999999999999999999999863        233455667777666666555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.39  E-value=1.5e-06  Score=69.28  Aligned_cols=94  Identities=21%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      .+++++|+.+|+++.+                  ..  +..+.  +|.+|...+.+++|+.++++|.+.  .++.+++++
T Consensus         8 ~~d~~~A~~~~~~aa~------------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L   63 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE------------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL   63 (138)
T ss_dssp             HHHHHHHHHHHHHHHH------------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHc------------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            5789999999999987                  22  12233  999999999999999999999998  589999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       305 a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |.+|..    .+++++|+.+|+++.+.  .++.+...++.+...
T Consensus        64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           64 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999998    89999999999999987  688899999988776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.39  E-value=1.5e-06  Score=83.57  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=66.2

Q ss_pred             hHHHHHhcchhHHhh---hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc----CChHHHH
Q 018098          212 VDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----GDLKGAL  284 (361)
Q Consensus       212 a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----~~~~~Al  284 (361)
                      ...+..+|..+...|   ++++|+.+|+++++                  ..+.....++++|.+|...    +++++|+
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~------------------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVS------------------RGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            346788899999999   99999999999987                  3333344445555555443    4555555


Q ss_pred             HHHHHHhhcCCCchhhHhHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          285 LDTEFAMRDGDDNVKALFRQGQA-Y--MALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~a~a-~--~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      .+++++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+.  +++.+...++.+..
T Consensus       238 ~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          238 ALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            5555555   5555555555555 3  3445555555555555543  24555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.38  E-value=3e-06  Score=82.03  Aligned_cols=109  Identities=16%  Similarity=0.080  Sum_probs=75.0

Q ss_pred             hhHHHHHhcchhHH----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHH
Q 018098          211 AVDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKG  282 (361)
Q Consensus       211 ~a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~  282 (361)
                      .+..+..+|..++.    .+++++|+.+|+++++                  .  .+..+++++|.+|..    .+++++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~------------------~--~~~~a~~~Lg~~y~~g~g~~~~~~~   97 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE------------------Q--GYTPAEYVLGLRYMNGEGVPQDYAQ   97 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            46778888888888    8899999999999876                  1  234566667777666    666777


Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      |+.+++++++.+  ++.+++++|.+|..    .+++++|+..|+++.+.  ++..+...++.+..
T Consensus        98 A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A           98 AVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            777777766543  56666666666666    66666677666666554  35556666665544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.37  E-value=2.2e-06  Score=79.30  Aligned_cols=121  Identities=11%  Similarity=0.038  Sum_probs=83.1

Q ss_pred             hHHHHHhcchhHH---hhhHHHHHHHHHHHHhhhccccc--------------cCCCCccc------------hhHHHHH
Q 018098          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWE--------------KEGIDEGK------------SSSLRKT  262 (361)
Q Consensus       212 a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~--------------~~~~~~~~------------~~~~~~~  262 (361)
                      |-.++-.|..++.   ...+.+|+.+|++|+++-+....              ........            ....++.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            4445555555554   45678999999999985442100              00011000            0022344


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      .+.++.-++.+++..|++++|+..+++|+.++| ++-+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            555666677777778999999999999999986 4677888899999999999999999999999997653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.35  E-value=2.1e-06  Score=76.43  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH--HHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhcCCC
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT--KSQIFTNSSACKLKL-----GDLKGALLDTEFAMRDGDD  296 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~Al~~~~~al~~~p~  296 (361)
                      ..+....|...+++|++                  ++|.  ...+|.-+|..|.++     |+.++|..++++||+++|+
T Consensus       175 Al~~l~~A~a~lerAle------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          175 LPDTVHAAVMMLERACD------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             CHHHHHHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhHHHHHHHHHHHHH------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            45677899999999999                  8887  677999999999996     9999999999999999997


Q ss_pred             c-hhhHhHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC
Q 018098          297 N-VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       297 ~-~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~~  331 (361)
                      . ..+++..|..+.. ++++++|.+.+++++..+|..
T Consensus       237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            5 9999999999988 599999999999999998873

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=9.1e-06  Score=76.64  Aligned_cols=120  Identities=11%  Similarity=-0.004  Sum_probs=74.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc---------------CCCCccchhH-------------HHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK---------------EGIDEGKSSS-------------LRKT  262 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~---------------~~~~~~~~~~-------------~~~~  262 (361)
                      ...++..+|..+++.|+|++|+++|.+++.+.......               .....+....             ....
T Consensus        54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  133 (434)
T 4b4t_Q           54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL  133 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence            45678899999999999999999999998865432100               0000000000             0111


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRD------GDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      ...++.++|.+|..+|+|.+|+..+++++..      .+....++...|.+|..+|++++|...|++++.+.+.
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            2345666677777777777777766666643      2223556666677777777777777777777666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.27  E-value=3.5e-06  Score=67.91  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=68.0

Q ss_pred             hhHHHHHhcchhHHhh---hHHHHHHHHHHHHhhhccccccCCCCccchhHHH-H-HHHHHHHHHHHHHHhcCChHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Al~  285 (361)
                      ..+..++.|..+.+.+   ++++++..+++.++                  .+ | ....+++++|..|+++++|++|+.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~------------------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3577888899998877   88899999999998                  44 5 567899999999999999999999


Q ss_pred             HHHHHhhcCCCchhhHhHHHHH
Q 018098          286 DTEFAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~a~a  307 (361)
                      +++++|+++|+|..|..-+-.+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999998887665443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.20  E-value=7.4e-06  Score=86.91  Aligned_cols=108  Identities=21%  Similarity=0.239  Sum_probs=89.0

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+...|..++..|+|++|+.+|.+|-                          -|..+|.|+.++|+|++|++.+.+|..
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~--------------------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS--------------------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh--------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            356779999999999999999999863                          478889999999999999999998855


Q ss_pred             cCC-------------------------CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          293 DGD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       293 ~~p-------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      ..+                         .++..+..++..|..+|.|++|+..|++++.++|.+..+...++.+..+-+
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            443                         123445567778889999999999999999999999999988888866543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=6.4e-06  Score=77.71  Aligned_cols=138  Identities=9%  Similarity=-0.011  Sum_probs=89.9

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ....+.|..+.+.|+|++|++.|.++++..+........ ........+....++.++|.+|..+|+|++|++.+.+++.
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-ASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-SSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345667778889999999999999999854322111111 1111223445567889999999999999999999999987


Q ss_pred             cCCCchh------hHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 018098          293 DGDDNVK------ALFRQGQAYMALNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       293 ~~p~~~k------a~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~  351 (361)
                      +.+...+      +...++.++...|++++|+..+++++.+.+..      ..+...++.+....+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence            6544322      23345666666777777777777776654321      33555566665555555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.17  E-value=1.1e-05  Score=77.61  Aligned_cols=107  Identities=15%  Similarity=0.021  Sum_probs=74.5

Q ss_pred             hhhHHHHHhcch-h--HHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-----ChH
Q 018098          210 NAVDSIKVFGNE-H--YKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-----DLK  281 (361)
Q Consensus       210 ~~a~~~~~~G~~-~--~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~  281 (361)
                      ..+..+..+|.. +  ...+++++|+.+|+++++                    .....+++++|.+|. .|     +++
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--------------------ADQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            346677777877 3  467888999999988875                    224567777777776 44     777


Q ss_pred             HHHHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          282 GALLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       282 ~Al~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      +|+.++.+|+   +.++.+++++|.+|..    ..++++|+.+|+++.+.  +++.+...++.+.
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  364 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF  364 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            7777777777   6777777777777766    33777777777777653  3455555555553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.17  E-value=2.6e-05  Score=60.80  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCC-chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~Al~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .....+|+|.|..+-.+   ..++|..++..++.+|. .-..+|.+|.+++.+|+|++|..+.+.+++++|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34567888888888765   56799999999999984 578999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 018098          339 AVAKKKIHER  348 (361)
Q Consensus       339 ~~~~~~~~~~  348 (361)
                      ..+..++.+.
T Consensus       119 ~~Ie~ki~kd  128 (134)
T 3o48_A          119 SMVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            8888887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.13  E-value=1.1e-05  Score=73.09  Aligned_cols=123  Identities=9%  Similarity=0.022  Sum_probs=94.4

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHH--HHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK--TKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ..+...|.++...|++++|+..+.+++.                  ..+  ....++..++.+++++|+.+.|.+.+++.
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~------------------~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGID------------------NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhc------------------cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3456889999999999999999999987                  332  67788999999999999999999999999


Q ss_pred             hhcCCC----chhhHhHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDD----NVKALFRQGQA--YMALN--DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKK  354 (361)
Q Consensus       291 l~~~p~----~~ka~~~~a~a--~~~l~--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  354 (361)
                      .+.+|+    +......++.+  ....|  ++++|...|+++.+..|+.......+. +...+++..++++.
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHH
Confidence            999994    33445555544  66556  999999999999888886233233333 66666666665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.11  E-value=4.5e-05  Score=60.21  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCC-chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGD---LKGALLDTEFAMRDGDD-NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~---~~~Al~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      .....+|+|.|+.+-.+   ..+++..++..++.+|. .-..+|.+|.+++.+|+|++|..+++..++++|+|..+..+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            44567888888888765   56799999999998884 578999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 018098          339 AVAKKKIHE  347 (361)
Q Consensus       339 ~~~~~~~~~  347 (361)
                      ..+..++..
T Consensus       118 ~~Ie~~i~k  126 (144)
T 1y8m_A          118 SMVEDKIQK  126 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.08  E-value=1.5e-05  Score=75.61  Aligned_cols=115  Identities=18%  Similarity=0.152  Sum_probs=79.3

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL  284 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al  284 (361)
                      .......+..+..+|..+++.|+|++|++.|.+|..                       ...|...+.++...|+|+.|.
T Consensus       141 A~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------------------~~~Wk~v~~aCv~~~ef~lA~  197 (449)
T 1b89_A          141 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-----------------------TRTWKEVCFACVDGKEFRLAQ  197 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC-----------------------chhHHHHHHHHHHcCcHHHHH
Confidence            334444555566666666666666666666666632                       345566666666677777774


Q ss_pred             HHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          285 LDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       285 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      ..... |..+|+.   ...+...|...|++++|+..+++++.+++....+...++.+..+.+
T Consensus       198 ~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          198 MCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            44442 4455544   3356678999999999999999999999999999999988876653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.03  E-value=7.1e-06  Score=60.71  Aligned_cols=69  Identities=10%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             hhHHHHHhcchhHHhhh---HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQD---YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~---y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      .+..+...|..++..++   .++|...+++|++                  ++|.+..++..+|..+++.|+|++|+.++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35677788888875555   7999999999999                  99999999999999999999999999999


Q ss_pred             HHHhhcCCCc
Q 018098          288 EFAMRDGDDN  297 (361)
Q Consensus       288 ~~al~~~p~~  297 (361)
                      +++++.+|..
T Consensus        67 ~~~l~~~p~~   76 (93)
T 3bee_A           67 VLLLDSNDPN   76 (93)
T ss_dssp             HHHHTCCCTT
T ss_pred             HHHHhhCCCC
Confidence            9999999984

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.00  E-value=4e-05  Score=81.47  Aligned_cols=110  Identities=16%  Similarity=0.116  Sum_probs=84.2

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhcc---cccc-CCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDI---CWEK-EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .+.|..+...|.|++|+..|+++-.....   +... .................+|.++|.++...|++++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            34688999999999999999987643321   1100 011111111112355688999999999999999999999887 


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                          +++.+|++.|.++..+|+|++|+++|.+|.+..+.
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                78999999999999999999999999999998854

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.95  E-value=3.8e-05  Score=68.38  Aligned_cols=140  Identities=14%  Similarity=0.017  Sum_probs=95.4

Q ss_pred             hHHHHhhhHHHHHhcchhHHh--------------hhHHHHHHHHHHHHhhhccccccC-CC--------C----ccchh
Q 018098          205 LSWWMNAVDSIKVFGNEHYKK--------------QDYKMALRKYRKALRYLDICWEKE-GI--------D----EGKSS  257 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~--------------g~y~~A~~~y~~al~~~~~~~~~~-~~--------~----~~~~~  257 (361)
                      .......+.-+...|+.+.+.              .++..|...|.++.++........ +.        +    ++...
T Consensus        66 ~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~  145 (301)
T 3u64_A           66 RGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLS  145 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHH
Confidence            334444555555556655543              357788899998888876432221 10        0    11122


Q ss_pred             HHHHHHHHHHHHHHHHHHh-----cCC------hHHHHHHHHHHhhcCCC--chhhHhHHHHHHHhc-----CCHHHHHH
Q 018098          258 SLRKTKSQIFTNSSACKLK-----LGD------LKGALLDTEFAMRDGDD--NVKALFRQGQAYMAL-----NDVDAAVE  319 (361)
Q Consensus       258 ~~~~~~~~~~~nla~~~~~-----l~~------~~~Al~~~~~al~~~p~--~~ka~~~~a~a~~~l-----~~~~~A~~  319 (361)
                      ..++.++.+++=.|.....     .+.      ...|....++||++||+  +..+|..+|..|..+     |+.++|.+
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            3345555555555554432     232      57889999999999999  577999999999996     99999999


Q ss_pred             HHHHHHHhCCCC-HHHHHHHHHHHHH
Q 018098          320 SFEKALKLEPND-GGIKKELAVAKKK  344 (361)
Q Consensus       320 ~~~~al~l~P~~-~~~~~~l~~~~~~  344 (361)
                      .|++|++++|+. ..+...+++....
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            999999999974 7887777776554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=1.4e-05  Score=76.34  Aligned_cols=92  Identities=9%  Similarity=0.056  Sum_probs=74.4

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+.++|..+..+|+|++|+.+|+++|.+.......          .+|.....++|+|.+|..+|+|++|+..+++
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            368889999999999999999999999999976544222          4678889999999999999999999999999


Q ss_pred             Hhhc-----CCCc---hhhHhHHHHHHHhc
Q 018098          290 AMRD-----GDDN---VKALFRQGQAYMAL  311 (361)
Q Consensus       290 al~~-----~p~~---~ka~~~~a~a~~~l  311 (361)
                      |+++     .|+.   ..++.+++.+...+
T Consensus       397 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          397 AFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9954     4444   45556666665544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.91  E-value=5.2e-05  Score=68.68  Aligned_cols=114  Identities=7%  Similarity=-0.056  Sum_probs=86.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH----HHHHHHHHHHH--HHhcC--ChHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT----KSQIFTNSSAC--KLKLG--DLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~nla~~--~~~l~--~~~~A  283 (361)
                      .+.+...+..+.+.|+.+.|.+.+++..+                  .+|.    .-.+..+++..  .+..|  ++++|
T Consensus       136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~------------------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A  197 (310)
T 3mv2_B          136 TELLLLAIEVALLNNNVSTASTIFDNYTN------------------AIEDTVSGDNEMILNLAESYIKFATNKETATSN  197 (310)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------------------cCccccccchHHHHHHHHHHHHHHhCCccHHHH
Confidence            34445566778899999999999999876                  4441    22344555544  55556  99999


Q ss_pred             HHHHHHHhhcCCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHH
Q 018098          284 LLDTEFAMRDGDD--NVKALFRQGQAYMALNDVDAAVESFEKALKL----------EPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       284 l~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l----------~P~~~~~~~~l~~~~~~~~  346 (361)
                      ...|+++....|+  ....+++   +++.+|++++|.+.++.++++          +|+|+.+..++..+...+.
T Consensus       198 ~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          198 FYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             HHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            9999999998887  3445555   899999999999999988887          5889999877766655544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.86  E-value=2.1e-05  Score=75.10  Aligned_cols=73  Identities=10%  Similarity=-0.000  Sum_probs=63.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.++|..+..+|+|++|+.+|+++|.+.......          .+|.....++|||.+|..+|+|++|+..+++|
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----------YSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            57888999999999999999999999999976543222          36788899999999999999999999999999


Q ss_pred             hhc
Q 018098          291 MRD  293 (361)
Q Consensus       291 l~~  293 (361)
                      +++
T Consensus       409 l~i  411 (433)
T 3qww_A          409 IAI  411 (433)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            964

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.83  E-value=1.1e-05  Score=76.61  Aligned_cols=127  Identities=13%  Similarity=0.009  Sum_probs=51.6

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc---------CCCCccchhHHHHHHHHHHHHHHHHHHhcCChHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK---------EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKG  282 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  282 (361)
                      ...+...+..+...|+|++|+.+++.+++..+.....         -....+...-+...+...|.++|.++...|+|++
T Consensus        61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yee  140 (449)
T 1b89_A           61 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA  140 (449)
T ss_dssp             ------------------------------------------------CHHHHTTTTTCC----------------CTTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Confidence            4466777778888899999999888887643211000         0000111111112233489999999999999999


Q ss_pred             HHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 018098          283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQ  351 (361)
Q Consensus       283 Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  351 (361)
                      |+.+|+++        ..|.++|.++..+|+|++|++.++++     ++...|+....+...+++.+.+
T Consensus       141 A~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          141 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             HHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHH
Confidence            99999977        58899999999999999999999999     4677777777776666555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.78  E-value=0.00016  Score=58.59  Aligned_cols=118  Identities=9%  Similarity=0.037  Sum_probs=85.1

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD  293 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~  293 (361)
                      .+++....++..+.|+.|+..+..++.+.+.-   ++.      --......++..+|..++..++|..|+..|++||.+
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~---~~~------~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN---PEL------FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---TTS------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC---ccc------ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            45666778889999999999999988843210   000      012234567899999999999999999999999833


Q ss_pred             CC-------------------------CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          294 GD-------------------------DNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       294 ~p-------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      ..                         ...+..|+.|.||..++++++|+..++..-.- -..+.+...|+++
T Consensus        93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL  164 (167)
T 3ffl_A           93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL  164 (167)
T ss_dssp             HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred             HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence            11                         11368899999999999999999987653111 1356666666665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.43  E-value=0.00049  Score=53.35  Aligned_cols=78  Identities=9%  Similarity=-0.046  Sum_probs=58.1

Q ss_pred             hHHHHHhcchhHHhhhHHH---HHHHHHHHHhhhccccccCCCCccchhHHH-H-HHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKM---ALRKYRKALRYLDICWEKEGIDEGKSSSLR-K-TKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ....++.|..+.+..+-..   +|..++..++                  .. | ..-.+++.+|..++++|+|.+|+.+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3445556666665554443   7777777665                  12 2 5667899999999999999999999


Q ss_pred             HHHHhhcCCCchhhHhHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a  307 (361)
                      |+.+|+++|+|..|..-+..+
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHH
Confidence            999999999998876655443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.35  E-value=0.0025  Score=59.79  Aligned_cols=114  Identities=14%  Similarity=0.063  Sum_probs=90.6

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc-cc-c--CCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC-WE-K--EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      +.+...|......++...|+..+.+|+.+..-- .+ .  ..+.......+......+...++.+++.+|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            334445555666789999999999999976421 11 1  1111233456677777888899999999999999999999


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALK  326 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~  326 (361)
                      .++..+|.+..++..+-.++...|+..+|++.|+++-+
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988755

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.32  E-value=0.00057  Score=55.41  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCC-----Cccch--hHHHHHHHHHHHHHHHHHHhcCChHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGI-----DEGKS--SSLRKTKSQIFTNSSACKLKLGDLKGA  283 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~nla~~~~~l~~~~~A  283 (361)
                      .++.+...|+.+|.+++|..|...|++||.+.+.+......     +....  ....+....+.+.+|.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            57788999999999999999999999999877644222110     00000  000123456889999999999999999


Q ss_pred             HHHHHHHhhcCCCchhhHhHHHHHH
Q 018098          284 LLDTEFAMRDGDDNVKALFRQGQAY  308 (361)
Q Consensus       284 l~~~~~al~~~p~~~ka~~~~a~a~  308 (361)
                      +...+.+-... ..++...-+|..|
T Consensus       142 i~~Le~Ip~k~-Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPSRQ-RTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCGGG-CCHHHHHHHHHHC
T ss_pred             HHHHhcCCchh-cCHHHHHHHHHHh
Confidence            99876543322 4677777777665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.17  E-value=0.0025  Score=49.58  Aligned_cols=76  Identities=11%  Similarity=0.042  Sum_probs=55.0

Q ss_pred             HHHHhcchhHHhh---hHHHHHHHHHHHHhhhccccccCCCCccchhHHHH-HHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          214 SIKVFGNEHYKKQ---DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK-TKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       214 ~~~~~G~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..++.+..+.+..   +..++|..++..++                  ..| ..-.+++.+|..+.++|+|.+|+.+++.
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~------------------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~  103 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDT  103 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------------------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3444444444433   44456666666555                  233 4667899999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQA  307 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a  307 (361)
                      +|+++|+|..|..-+..+
T Consensus       104 lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A          104 LFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHTTCTTCHHHHHHHHHH
T ss_pred             HHhhCCCCHHHHHHHHHH
Confidence            999999998876655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.97  E-value=0.0035  Score=49.41  Aligned_cols=45  Identities=11%  Similarity=0.020  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      ..-.+++.+|..+.++|+|.+|+.+++.+|+++|+|..|..-+..
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            355689999999999999999999999999999999777655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.96  E-value=0.0036  Score=63.03  Aligned_cols=104  Identities=9%  Similarity=-0.006  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHH-HHHHHHhhcCCCchhhHhHHHH
Q 018098          228 YKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGAL-LDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       228 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al-~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      .+.....|++||.                  ..|....+|...|..+...++.++|+ ..+++|+...|.+...|+..+.
T Consensus       325 ~~Rv~~~Ye~aL~------------------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~  386 (679)
T 4e6h_A          325 KARMTYVYMQAAQ------------------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE  386 (679)
T ss_dssp             HHHHHHHHHHHHH------------------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH------------------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4556778999998                  66778899999999999999999997 9999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHHHHH
Q 018098          307 AYMALNDVDAAVESFEKALKL-----------EPN-----------DGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       307 a~~~l~~~~~A~~~~~~al~l-----------~P~-----------~~~~~~~l~~~~~~~~~~~  349 (361)
                      .....|+++.|...|+++++.           .|.           ...++.....+..+.+..+
T Consensus       387 ~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~  451 (679)
T 4e6h_A          387 QYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA  451 (679)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999985           253           2346777777766665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.94  E-value=0.0076  Score=60.62  Aligned_cols=132  Identities=10%  Similarity=0.033  Sum_probs=88.1

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhcccc----ccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICW----EKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+....+.|+++.|...|++++..+....    +..+..++....+......+|...+....+.+..+.|...+.+|+.
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444456677777777777776331100    0000000111112223455788888888888999999999999998


Q ss_pred             c-CCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          293 D-GDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       293 ~-~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      . .+...+.|...|..-...+ +++.|...|+++++..|+++..+.........+.+.
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~  520 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE  520 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence            8 5555777777777666665 589999999999999999999987777766555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.0069  Score=61.25  Aligned_cols=64  Identities=13%  Similarity=0.134  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098          261 KTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       261 ~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      +....++.-=|..++..++|+-|+..+++|....|...+.|++++.+|..+|+|+.|+-.+..+
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3334455555777778999999999999999999999999999999999999999999877665

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.73  E-value=0.017  Score=45.87  Aligned_cols=97  Identities=11%  Similarity=0.021  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHH
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQ  306 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~  306 (361)
                      -.+.-++.|++|+.-++-.         . .......+.+|.+.|.. ..+++.++|.+.|+.++.++...++.|...|+
T Consensus        34 ~l~rlrd~YerAia~~Pp~---------k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~Aq  102 (161)
T 4h7y_A           34 LLNKLIGRYSQAIEALPPD---------K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQ  102 (161)
T ss_dssp             HHHHHHHHHHHHHHHSCGG---------G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcc---------c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3378889999999844321         1 22445667788888865 67899999999999999998888888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          307 AYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       307 a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      --...|+...|...+.+|+.+.|...+.
T Consensus       103 FEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A          103 FELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            8888999999999999999999986544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.59  E-value=0.0036  Score=57.77  Aligned_cols=73  Identities=8%  Similarity=-0.100  Sum_probs=60.3

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..++..|++++|+..+++|+.                  +++. ..+|..+|.++...|++++|++.+.+|+
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~------------------Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGID------------------LEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------HCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------cCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44455567777788999999999999999                  6553 5677889999999999999999999999


Q ss_pred             hcCCCchhhHhHH
Q 018098          292 RDGDDNVKALFRQ  304 (361)
Q Consensus       292 ~~~p~~~ka~~~~  304 (361)
                      +++|... .|+..
T Consensus       338 rL~P~~~-t~~~~  349 (372)
T 3ly7_A          338 NLRPGAN-TLYWI  349 (372)
T ss_dssp             HHSCSHH-HHHHH
T ss_pred             hcCCCcC-hHHHH
Confidence            9999774 44443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.68  E-value=0.086  Score=42.71  Aligned_cols=73  Identities=11%  Similarity=0.024  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcC---------------CCchhhHh-HHHHHHHhcCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAM--RDG---------------DDNVKALF-RQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al--~~~---------------p~~~ka~~-~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      .++..+--+.||.++++|..|+...+..|  +.+               |.+-+.++ -+|..+..+|+-++|+.+|.+.
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            34566778899999999999999999999  332               33334433 4699999999999999999999


Q ss_pred             HHhCCCCHHHH
Q 018098          325 LKLEPNDGGIK  335 (361)
Q Consensus       325 l~l~P~~~~~~  335 (361)
                      ....|--+.+.
T Consensus       141 f~~~~lf~~vE  151 (242)
T 3kae_A          141 FGKSFLFSPVE  151 (242)
T ss_dssp             HHHCCCHHHHH
T ss_pred             cCCccccchHH
Confidence            99888655554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.43  E-value=0.072  Score=49.68  Aligned_cols=99  Identities=16%  Similarity=-0.011  Sum_probs=79.0

Q ss_pred             HhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--
Q 018098          217 VFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG--  294 (361)
Q Consensus       217 ~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~--  294 (361)
                      .+|..++..|+|.+|++.+.+.++.+....            .......++..-..+|..++++.++...+++|....  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d------------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD------------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS------------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc------------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            679999999999999999999998665420            134667788999999999999999999999887432  


Q ss_pred             --C-Cc--hhhHhHHHHHHH-hcCCHHHHHHHHHHHHHh
Q 018098          295 --D-DN--VKALFRQGQAYM-ALNDVDAAVESFEKALKL  327 (361)
Q Consensus       295 --p-~~--~ka~~~~a~a~~-~l~~~~~A~~~~~~al~l  327 (361)
                        + ..  ......-|.+++ ..++|..|..+|-.+++-
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence              2 22  344455688899 899999999999998754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.35  E-value=0.11  Score=50.21  Aligned_cols=134  Identities=10%  Similarity=-0.058  Sum_probs=90.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc------CCCCccchhH----------------HHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK------EGIDEGKSSS----------------LRKTKSQIFTN  269 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~------~~~~~~~~~~----------------~~~~~~~~~~n  269 (361)
                      ...|...+..+...|+.+.|...|++|+.. +.....      .....+....                .......+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            455777777888899999999999999986 422100      0000000000                01223466777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          270 SSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN-DVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       270 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      .+....+.++.+.|...+.+| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.........+.+
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence            888877888999999999999 443345566666666655555 69999999999999999988876666555444443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.28  E-value=0.11  Score=50.13  Aligned_cols=83  Identities=8%  Similarity=-0.100  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      ...++..+|........+..|..+|.+|+.+.|.+..+|..+|.+....|+.-+|+-+|-+++......+.++.++..+-
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            34577888888888899999999999999999999999999999999999999999999999988777888888887776


Q ss_pred             HHH
Q 018098          343 KKI  345 (361)
Q Consensus       343 ~~~  345 (361)
                      ...
T Consensus       231 ~~~  233 (497)
T 1ya0_A          231 SKA  233 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.043  Score=51.96  Aligned_cols=102  Identities=13%  Similarity=-0.034  Sum_probs=79.5

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+|..+++.|++++|++.|.++..+...               ......++.+...+++..++|..+..+..++-.
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS---------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC---------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            35678999999999999999999998875432               124567788888999999999999999999875


Q ss_pred             cC---CCc---hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          293 DG---DDN---VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       293 ~~---p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      +-   ++.   .+.....|.++...++|.+|...|-.++.-..
T Consensus       197 ~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          197 MIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            42   221   24445567888899999999999988876543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.14  E-value=0.15  Score=44.62  Aligned_cols=66  Identities=20%  Similarity=0.073  Sum_probs=59.4

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      -.++.++.++|+..+...++.+|.+++.-..+-+.++-.|+|+.|.+-++.+.+++|........+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999876554443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.35  E-value=0.22  Score=47.90  Aligned_cols=112  Identities=7%  Similarity=-0.075  Sum_probs=83.4

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-DLKGALLDTEFAM  291 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~Al~~~~~al  291 (361)
                      ..+...+....+.+..+.|...|.+| ...                  +....+|...|..-...+ +.+.|...++.++
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~------------------~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE------------------GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS------------------CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC------------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            45666666666788899999999999 410                  011235555566555555 6999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      +..|+.+..+...+.....+|+.+.|...|+++    +....++..........++
T Consensus       348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            998998887777777778899999999999997    3466777777777666544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.05  Score=55.04  Aligned_cols=59  Identities=19%  Similarity=0.259  Sum_probs=52.3

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      -+...+..+.++|+|+.|+.+-++|+.                  +.|.....|..||.||.++|+|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~------------------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE------------------LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh------------------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            455567788899999999999999999                  78888999999999999999999999776665

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.96  E-value=0.22  Score=43.61  Aligned_cols=62  Identities=10%  Similarity=0.019  Sum_probs=55.5

Q ss_pred             chhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchh
Q 018098          220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK  299 (361)
Q Consensus       220 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~k  299 (361)
                      ..+++.|+.++|++.....++                  .+|.+......+...++-.|+|+.|+..++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR------------------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH------------------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356788999999999999999                  77888888888889999999999999999999999998743

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.07  E-value=3.6  Score=38.14  Aligned_cols=148  Identities=13%  Similarity=0.081  Sum_probs=95.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc---------------cccCCCCccch--------hHHHH-----
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC---------------WEKEGIDEGKS--------SSLRK-----  261 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~---------------~~~~~~~~~~~--------~~~~~-----  261 (361)
                      ..-.+...+|..+.+.|++++-.+.......++...               ...-+...+..        .....     
T Consensus        17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f   96 (394)
T 3txn_A           17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF   96 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999988876555444311               11111111110        00001     


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCC--chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRD----GDD--NVKALFRQGQAYMALNDVDAAVESFEKALKLE---PNDG  332 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~----~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---P~~~  332 (361)
                      ....+-..+|..|+..|+|.+|+..+.+.++-    |..  -...+....+.|..++++..+.+.|.+|....   +.++
T Consensus        97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p  176 (394)
T 3txn_A           97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP  176 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence            11123458899999999999999998888853    221  15677778899999999999999999997664   3456


Q ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 018098          333 GIKKELAVAKKKIH-----ERREQEKKQYR  357 (361)
Q Consensus       333 ~~~~~l~~~~~~~~-----~~~~~~k~~~~  357 (361)
                      .+...+..+...+.     +++.+...+|.
T Consensus       177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e  206 (394)
T 3txn_A          177 KVQGALDLQSGILHAADERDFKTAFSYFYE  206 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence            55555555544443     34555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.69  E-value=0.76  Score=37.55  Aligned_cols=29  Identities=10%  Similarity=0.014  Sum_probs=21.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALR  240 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~  240 (361)
                      ...|+.+|......|+++-|.++|.++-.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            44677777777777777777777777654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=91.31  E-value=0.73  Score=32.56  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=33.9

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      .+..|..+...|...-+.|+|++|+.+|.+|++++....
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~l   45 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQII   45 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            556788899999999999999999999999999876543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.11  E-value=1.5  Score=42.25  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=71.1

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCchhhHh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRD--GDDNVKALF  302 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~  302 (361)
                      .+.++.|.+.|.+....                .+.| +...|+.+-.+|.+.|++++|+..+++..+.  .| +...|.
T Consensus        83 ~~~l~~A~~lf~~M~~~----------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn  144 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVD----------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYG  144 (501)
T ss_dssp             CHHHHHHHHHHHHHHHT----------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred             cchHHHHHHHHHHHHHh----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceeh
Confidence            35667777777775540                0122 3345777778888889999998888887754  34 566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Q 018098          303 RQGQAYMALNDVDAAVESFEKALKL--EPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       303 ~~a~a~~~l~~~~~A~~~~~~al~l--~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      .+-.+|...|+.++|.+.|++..+.  .| |...+..+-.+..+.++.++
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~  193 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADK  193 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHH
Confidence            7777888888999998888887664  34 44455555555555444433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.09  E-value=2.2  Score=39.50  Aligned_cols=87  Identities=15%  Similarity=0.060  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC----------c------------hhhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDD----------N------------VKALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~----------~------------~ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      .+...|......++.+.|+..+.+|+.+..-          +            ..+...++.++..+|++++|+..+.+
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3444444455678999999999999976421          1            23555677888999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          324 ALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       324 al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      ++..+|-+..++..+..+..+..+..++.
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al  225 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDAL  225 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999988877766555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.63  E-value=1.3  Score=42.66  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             HHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 018098          213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR  292 (361)
Q Consensus       213 ~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~  292 (361)
                      ..+..+-..+.+.|++++|++.|++..+.=                +.| +...|+.+-..|.+.|++++|...+++..+
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g----------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFG----------------IQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------CCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            445566677889999999999999876510                122 344677788888999999999999999886


Q ss_pred             c--CCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHh--CCCC
Q 018098          293 D--GDDNVKALFRQGQAYMALNDVDAAVESFEKALKL--EPND  331 (361)
Q Consensus       293 ~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~P~~  331 (361)
                      .  .| +...|..+-.++...|+.++|.+.|++..+.  .|+.
T Consensus       169 ~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          169 SEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             cCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            5  34 5677888888999999999999999987664  4543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=90.04  E-value=0.84  Score=34.59  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.7

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      ..+..|..+...|...-..++|++|+.+|..|++++..+.
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al   52 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV   52 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            3456788888888888899999999999999999876553

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.01  E-value=0.99  Score=31.87  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=35.8

Q ss_pred             hHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          205 LSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       205 ~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      ....+..|..+...|...-+.|+|++|+.+|.+|++++....
T Consensus        12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~al   53 (83)
T 2w2u_A           12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            345667888999999999999999999999999999876543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.93  E-value=0.59  Score=44.95  Aligned_cols=82  Identities=13%  Similarity=0.028  Sum_probs=70.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .-..+..+|.....+..+..|..+|.+|+.                  +.|.....|+-||.+....++.-+|+-+|.++
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~------------------~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs  212 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQ------------------LVPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHH------------------hCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence            445667889999889999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHh
Q 018098          291 MRDGDDNVKALFRQGQAYMA  310 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~  310 (361)
                      |......+.|.-++...+..
T Consensus       213 l~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          213 IAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HSSSBCCHHHHHHHHHHHHH
T ss_pred             HhcCCCChhHHHHHHHHHHH
Confidence            98766677777777666653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.54  E-value=1.1  Score=45.24  Aligned_cols=26  Identities=15%  Similarity=-0.013  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      ..|.++|..+++.++++.|+..|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46677777777777777777776664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.13  E-value=0.94  Score=35.96  Aligned_cols=93  Identities=10%  Similarity=-0.034  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhcCCCc--------hhhHhHHHHHHHhcCCHHHHHHHHHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDL------KGALLDTEFAMRDGDDN--------VKALFRQGQAYMALNDVDAAVESFEKA  324 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~------~~Al~~~~~al~~~p~~--------~ka~~~~a~a~~~l~~~~~A~~~~~~a  324 (361)
                      +.|.+...|.+......+.|+.      ++.++.|++|+..-|-.        +..|.+.|. +..+++.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence            4556666777777777777888      88899999999765543        345555554 46779999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          325 LKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       325 l~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      +.++..-.-++...++.+-+.....++.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            9997777777877777766655554443

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=88.58  E-value=7.2  Score=34.85  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=67.9

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc--CCh-----HHHHHHH
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL--GDL-----KGALLDT  287 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--~~~-----~~Al~~~  287 (361)
                      ....|..++..|+|.+|+..|+..|..+.-+.-.   ++++..+.......+...+-.+-+++  ++.     +.....+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~l  181 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRIC  181 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHH
Confidence            4678999999999999999999999866543221   22233334333333333222222333  221     2322223


Q ss_pred             HHHh-----hcCCCchhhHhHHHH-HHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          288 EFAM-----RDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       288 ~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      +-|.     ++.|..--.-.|.|. ..+..++|..|...-++.+++.|.
T Consensus       182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            3222     445544333344444 467789999999999999999986

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.35  E-value=4.9  Score=37.87  Aligned_cols=105  Identities=7%  Similarity=-0.063  Sum_probs=77.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+.....++..+...|+|.+|.........-....            .-......++..-...|+..++|..|.....++
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~------------~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki  203 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS------------MEMSEKIQFILEQMELSILKGDYSQATVLSRKI  203 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            35566778999999999999999988876421110            013355677788888999999999999999887


Q ss_pred             h----hcCC-Cc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHHh
Q 018098          291 M----RDGD-DN--VKALFRQGQAYMALNDVDAAVESFEKALKL  327 (361)
Q Consensus       291 l----~~~p-~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l  327 (361)
                      .    ...+ ..  ...+...|..+...++|.+|..+|..+++.
T Consensus       204 ~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          204 LKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4    2222 22  345556688889999999999999988764

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=87.93  E-value=1  Score=36.45  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             EEEEEEeCCeeee-EEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEE--eCCCCCCCCCC
Q 018098            6 CFLDISIGVELEG-RIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQ--GGDISAGDGTG   82 (361)
Q Consensus         6 v~~~~~~~~~~~G-~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq--~G~~~~~~~~~   82 (361)
                      -|+.|++..  .| +++.+|..+.||+||+.|+++-              =|.+..+|-..-|--|.  -|++..     
T Consensus        22 r~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~L--------------P~~~~viHarwSGeeVy~~lp~f~~-----   80 (188)
T 3kop_A           22 RYINITLEK--RGVTCKALLLDDVAPRTSKAVWDAL--------------PQSSQVFHGKYARNEIYNLVPAFAP-----   80 (188)
T ss_dssp             CEEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHC--------------CEEEECEECSSSSSEEEEEEECCSS-----
T ss_pred             eEEEEEEec--CCeEEEEEEccccChHHHHHHHHhC--------------CCCcceEEEEEecceEEEECCcccc-----
Confidence            467777632  23 4789999999999999999964              26777777777664333  333220     


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEee---c---C----C--C------CCCCcceEEecCCCC--------CCCCCceE
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMA---N---A----G--P------NTNGSQFFITTTRTS--------HLDGKHVV  136 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~---~---~----~--~------~~~~sqF~I~~~~~~--------~ld~~~~v  136 (361)
                            ...+.||.. .+..+|-|.+-   .   .    |  +      .+....+.|..+.+-        ++.|  .+
T Consensus        81 ------~~~g~EN~T-~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~  151 (188)
T 3kop_A           81 ------KEPGAENTT-VTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NV  151 (188)
T ss_dssp             ------SCCCSCSEE-SSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EE
T ss_pred             ------cCCCcCCCC-CCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cE
Confidence                  112344443 23456766653   1   1    1  0      111235555554432        4444  58


Q ss_pred             EeEEEeChHHHHHHhc
Q 018098          137 FGRVIKGMGVVRSIEH  152 (361)
Q Consensus       137 fG~V~~g~~vl~~i~~  152 (361)
                      |++|++|+|-+.++-+
T Consensus       152 F~TIveGle~la~~c~  167 (188)
T 3kop_A          152 FATIVEGLDEMAAACQ  167 (188)
T ss_dssp             EEEEEESHHHHHHHHH
T ss_pred             EEEEecCHHHHHHHHH
Confidence            9999999987766543

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=87.83  E-value=7.3  Score=34.85  Aligned_cols=117  Identities=10%  Similarity=-0.003  Sum_probs=67.5

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC-------ChHHHHH--
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG-------DLKGALL--  285 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-------~~~~Al~--  285 (361)
                      ....|..++..|+|.+|+..|+..|-.+.-+.-.   ++++..+.......+...+-.+-+++.       +....++  
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVD---DAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            4568999999999999999999999866543222   222222333333333222222222221       1111111  


Q ss_pred             HHHHHhhcCCCchhhHhHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 018098          286 DTEFAMRDGDDNVKALFRQGQ-AYMALNDVDAAVESFEKALKLEPNDGGI  334 (361)
Q Consensus       286 ~~~~al~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~P~~~~~  334 (361)
                      .|=.-.++.|..--.-.|.|. ..+..++|..|....++.+++.|..+.+
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a  243 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA  243 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence            111122445444333344444 4677899999999999999999965433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.52  E-value=1.7  Score=43.79  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=9.8

Q ss_pred             HHHhcCCHHHHHHHHHH
Q 018098          307 AYMALNDVDAAVESFEK  323 (361)
Q Consensus       307 a~~~l~~~~~A~~~~~~  323 (361)
                      ++..+|++++|++.|.+
T Consensus       745 ~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          745 AYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            44556666666666544

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.70  E-value=1.8  Score=31.20  Aligned_cols=39  Identities=18%  Similarity=0.081  Sum_probs=33.2

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccc
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW  246 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~  246 (361)
                      .+..|..+...|...-+.|+|++|+.+|..|++++....
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al   49 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL   49 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            445788888899999999999999999999999876543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.05  E-value=2.1  Score=41.06  Aligned_cols=71  Identities=15%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--C---chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          262 TKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGD--D---NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       262 ~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p--~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      ....+++-+-..|+..+.|+.|.....++.-...  .   .+..+|..|.++...++|.+|.++|..|++..|.+.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            4456777888899999999999999999963322  1   167788899999999999999999999999888653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.24  E-value=4.3  Score=43.21  Aligned_cols=105  Identities=12%  Similarity=-0.022  Sum_probs=73.1

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHH---------HHHHHHHHHHHHHHhcCChHHHHH
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRK---------TKSQIFTNSSACKLKLGDLKGALL  285 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~nla~~~~~l~~~~~Al~  285 (361)
                      .+-+|..++..|++++|..+|.+|..-+..   ..... .......+         .....|......+.+.+.++.+++
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~---~~~l~-~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~  920 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYS---HTSQF-AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE  920 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTT---CCCSC-SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcc---cchhh-hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467899999999999999999998542211   11000 00001111         122457777888888899999999


Q ss_pred             HHHHHhhcCCCch-----hhHhHHHHHHHhcCCHHHHHHHHHH
Q 018098          286 DTEFAMRDGDDNV-----KALFRQGQAYMALNDVDAAVESFEK  323 (361)
Q Consensus       286 ~~~~al~~~p~~~-----ka~~~~a~a~~~l~~~~~A~~~~~~  323 (361)
                      .+..||...+.+.     ..|.++-.++..+++|++|...+..
T Consensus       921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9999997654332     2678888999999999999876643

>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}

Probab=83.20  E-value=3.8  Score=38.68  Aligned_cols=31  Identities=13%  Similarity=0.049  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHHhhc-CCCchhhHhHHHHHHHh
Q 018098          280 LKGALLDTEFAMRD-GDDNVKALFRQGQAYMA  310 (361)
Q Consensus       280 ~~~Al~~~~~al~~-~p~~~ka~~~~a~a~~~  310 (361)
                      |++|+.+++++-.. ++...+-+...+.-|..
T Consensus       455 Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~  486 (526)
T 2wb7_A          455 YKAAINDLQKAAQQDDYQMFLNYLNAAKKHEM  486 (526)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCHHHHHHHHHHhhhhhh
Confidence            45555555555422 22333444444433333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.68  E-value=11  Score=30.56  Aligned_cols=48  Identities=19%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  325 (361)
                      ..+++|+++.|.+.+...     ++...|.++|.+....|+++-|..+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            346899999999998765     578899999999999999999999998864

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.39  E-value=1.2  Score=31.83  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcc
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI  244 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~  244 (361)
                      ..|-.+-.++..+.+.|+|++||++..+|..++..
T Consensus        13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            35777788899999999999999999999986643

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.30  E-value=1.8  Score=40.72  Aligned_cols=76  Identities=12%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCC---CchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGD---DNVKALFRQGQAYMALNDVDAAVESFEKALKLEP--NDGGIKKELAV  340 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~l~~  340 (361)
                      ++..+|..|.+.|++++|++.+.++.....   .-...++..-.++...++|..+...++++..+-.  .++..+..+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            567899999999999999999999886533   3467888888899999999999999999976632  34544444433


Q ss_pred             H
Q 018098          341 A  341 (361)
Q Consensus       341 ~  341 (361)
                      .
T Consensus       213 ~  213 (429)
T 4b4t_R          213 Y  213 (429)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.40  E-value=1.6  Score=30.78  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=31.9

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      .+..|..+...|...-..|+|++|+.+|..|++++...
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a   46 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA   46 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            44567788888888889999999999999999977554

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.86  E-value=2.2  Score=30.22  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=29.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      .|..+...|..+-+.|+|++|+.+|..|++++...
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~a   49 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV   49 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46677778888889999999999999999977644

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.45  E-value=15  Score=34.55  Aligned_cols=87  Identities=16%  Similarity=0.064  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhh----cCCCc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMR----DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALK---LEPNDGG  333 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~----~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~---l~P~~~~  333 (361)
                      .+.+...||..|...|+|.+|.........    .++..  ...+......+...+++..|...++++..   -.+..+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            456678899999999999999998888762    22222  55777778899999999999999998742   3455565


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018098          334 IKKELAVAKKKIHERR  349 (361)
Q Consensus       334 ~~~~l~~~~~~~~~~~  349 (361)
                      ....+-.+..++...+
T Consensus       216 lk~~~~~~~~~~~~~e  231 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHK  231 (445)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5555555544444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	5e-61
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-60
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-57
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	7e-56
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	5e-54
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-49
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	4e-49
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-48
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-48
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-48
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	5e-47
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	3e-46
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	2e-45
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	4e-43
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-42
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-38
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-36
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-30
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	2e-30
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	6e-30
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-28
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-26
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-25
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-23
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-21
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-11
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	7e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	4e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  191 bits (487), Expect = 5e-61
 Identities = 100/171 (58%), Positives = 123/171 (71%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R R FLD++I   L GRI++E+YND+ P+T  NF  LCTG  G G  +G PLHYK   FH
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           RVIK FMIQGGD + GDGTGGESIYG  F+DE F +KH+   ++SMAN GPNTNGSQFFI
Sbjct: 63  RVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFI 122

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           TTT   HL+  HVVFG+V+ G  VV  IE++ T   + P+ADV I +CGE+
Sbjct: 123 TTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  190 bits (484), Expect = 2e-60
 Identities = 119/187 (63%), Positives = 141/187 (75%), Gaps = 3/187 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
            + PR F D+ IG E  GRI++E++ D++PKTAENFRALCTGEKGIGP TG PLH+K   
Sbjct: 12  PSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCP 71

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+IK FMIQGGD S  +GTGGESIYG KFEDENF  KH+++G+LSMANAG NTNGSQF
Sbjct: 72  FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQF 131

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDG 180
           FITT  T HLDGKHVVFG+VIKGMGV + +E+V     + P     I +CGE+ EG D G
Sbjct: 132 FITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGDDWG 190

Query: 181 ISNFFND 187
           I  F  D
Sbjct: 191 I--FPKD 195

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  182 bits (462), Expect = 2e-57
 Identities = 104/173 (60%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 1   MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIR 60
           M+R + F DI+IG +  GRI++E+Y+DV+PKTA NFRALCTGE GIG + G PLH+K  +
Sbjct: 1   MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKS-GKPLHFKGSK 59

Query: 61  FHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQF 120
           FHR+I  FMIQGGD + G+GTGGESIYG KF DENF+ KH   G+LSMANAGPNTNGSQF
Sbjct: 60  FHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQF 119

Query: 121 FITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           F+ T +T  LDGKHVVFGRV++G+ VV+++E      +  P+ D  I DCG++
Sbjct: 120 FLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  178 bits (452), Expect = 7e-56
 Identities = 99/171 (57%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
           R + F DISI     GRII E+++D+ P+T ENFRALCTGEK    + G  LHYK   FH
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI--GSRGKNLHYKNSIFH 60

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFI 122
           R+I  FM QGGDI+ G+G+GGESIYG  F DENF +KH++ G+LSMANAGPNTN SQFFI
Sbjct: 61  RIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFI 120

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T      LDGKHVVFG+VI+GM VVR +E      +      V ITDCGE+
Sbjct: 121 TLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL 170

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  173 bits (439), Expect = 5e-54
 Identities = 97/168 (57%), Positives = 116/168 (69%), Gaps = 9/168 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
              F DI+      G I  ++++DV+PKTA NFRALCTGEKG G             FHR
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAG--------SHFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM+QGGD +AG+GTGG+SIYG KF DENF+LKH + G+LSMANAGPNTNGSQFFIT
Sbjct: 54  VIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           T  TS LDGKHVVFG VI GM VV++IE   +G +  P + + I  CG
Sbjct: 114 TVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSRIEIAKCG 160

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  162 bits (410), Expect = 2e-49
 Identities = 102/191 (53%), Positives = 124/191 (64%), Gaps = 16/191 (8%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
            + F D+ IG +  GRI++ ++ +V+PKT ENF AL TGEKG G        YK   FHR
Sbjct: 8   DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG--------YKGSIFHR 59

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD +A DGTGG SIYG  F DENF+LKH   G +SMANAGP+TNGSQFFIT
Sbjct: 60  VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 119

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIPEGADDGISN 183
            T+ + LDGKHVVFG+V+ GM VV SIE   T  +D P+ D TI + G+I       +  
Sbjct: 120 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID------VKT 173

Query: 184 FFNDGDSYPDW 194
            F      PDW
Sbjct: 174 PF--VVEVPDW 182

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  161 bits (407), Expect = 4e-49
 Identities = 97/170 (57%), Positives = 120/170 (70%), Gaps = 3/170 (1%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F D+SIG +  GR+ +E++ DV+PKTAENFR  CTGE       GVP+ YK   FHR
Sbjct: 7   PVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR---KDGVPIGYKGSTFHR 63

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD   GDGTG  SIY   F DENF+L+H   G+LSMAN+GP+TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
            ++   LDGKHVVFG++I G+ V+R IE+V TG N+ P   V I+ CGE+
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  159 bits (403), Expect = 2e-48
 Identities = 90/171 (52%), Positives = 108/171 (63%), Gaps = 8/171 (4%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
            R + D+ IG +  GRI++ ++   +PKTA NF  L    KG G        Y   +FHR
Sbjct: 7   DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG--------YPGSKFHR 58

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FMIQGGD + GDGTGG SIYG KF DENF+LKH   G LSMANAG +TNGSQFFIT
Sbjct: 59  VIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFIT 118

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEIP 174
           T +T  LDG+HVVFG++++GM VVR IE       D P  DV I   G I 
Sbjct: 119 TVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  158 bits (401), Expect = 2e-48
 Identities = 89/170 (52%), Positives = 119/170 (70%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
            + + DI+IG E  GR+++ ++ + +PKT ENF+ L +GE G G        YK   FHR
Sbjct: 6   DKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG--------YKGSIFHR 57

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI+ FMIQGGD +  DGTGG+SIYG +F+DEN ++KH   G +SMANAGPN+NGSQFF+T
Sbjct: 58  VIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHFV-GAVSMANAGPNSNGSQFFVT 116

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T  T  LDG+HVVFG+V++GM VV+ +E+  TG ND P   V I DCG +
Sbjct: 117 TAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 3e-48
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 9/170 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  +LD+    +  GR+++E+  DV+PKTAENFRALCTGEKG          YK   FHR
Sbjct: 3   PLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHR 54

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VI  FM Q GD +  +GTGG+SIYG +F DENF LKH   G+LSMANAGPNTNGSQFFI 
Sbjct: 55  VIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFIC 114

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGEI 173
           T +T  LDGKHVVFG VI+GM VV+ IE   +  +      + ITDCG++
Sbjct: 115 TIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQL 163

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  156 bits (394), Expect = 5e-47
 Identities = 83/173 (47%), Positives = 117/173 (67%), Gaps = 6/173 (3%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  F+DI++G    G+   E++ +++PKT+ENFR  CTGE        +P+ YK   FHR
Sbjct: 17  PVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK---VNNLPVGYKNTIFHR 73

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           VIK FMIQGGD    +G+G  SIYG KF+DENF++KH+++G+LSMAN+GPNTNG QFFIT
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFIT 133

Query: 124 TTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           T +   LDGK+VVFGR+I    + +++ IE+V        P   + + +CGE+
Sbjct: 134 TKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  153 bits (388), Expect = 3e-46
 Identities = 86/178 (48%), Positives = 107/178 (60%), Gaps = 16/178 (8%)

Query: 4   PRCFLDISIGVELE-----GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKV 58
            + F D+            GRI+  +++  +PKTA+NFR LC    G          Y+ 
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRE 53

Query: 59  IRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGS 118
             FHR+I  FMIQGGD + G+GTGG SIYG KF DENF  KH++KG+LSMANAGPNTNGS
Sbjct: 54  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGS 113

Query: 119 QFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGD-NDCPIADVTITDCGEI 173
           QFFITT  TS LDGKHVVFG V   K   VV+ IE + +   +        I +CGE+
Sbjct: 114 QFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (381), Expect = 2e-45
 Identities = 91/169 (53%), Positives = 113/169 (66%), Gaps = 9/169 (5%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P+ ++DI IG +  GRI + + +DV+P TAENFR LCT EKG          +K   FHR
Sbjct: 2   PQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF--------GFKGSSFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +I  FM QGGD +  +GTGG+SIYG KF+DENF LKH   G+LSMAN+GPNTNGSQFF+T
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCGE 172
             +T  LDGKHVVFG V +G+ V+R IE      +  P   V I DCGE
Sbjct: 114 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ-GSKDGKPKQKVIIADCGE 161

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 4e-43
 Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 18/166 (10%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P  +L+ S+G      I++E+Y    PKT +NF  L               +Y   +FHR
Sbjct: 12  PNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHR 55

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFI 122
           +IK FMIQGGD + G G GG SIYG +FEDE + +LK    G+L+MANAGP+TNGSQFF+
Sbjct: 56  IIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFV 114

Query: 123 TTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTIT 168
           T   T  LDGKH +FGRV +G+G+V  +  V T   D P+ DV I 
Sbjct: 115 TLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-42
 Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 17/171 (9%)

Query: 14  VELE---GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMI 70
           V L    G + +E++ D+ PKT ENF  LC              +Y    FHR I+ F+I
Sbjct: 3   VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVI 51

Query: 71  QGGDISAGDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSH 129
           QGGD + G GTGGES +G  F+DE    L H  +G+LSMAN+GPN+N SQFFIT    ++
Sbjct: 52  QGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGEIPEGADD 179
           LD KH +FGRV+ G  V+ ++E+V +    D P  ++ I       +  ++
Sbjct: 111 LDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPYEE 161

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  132 bits (332), Expect = 4e-38
 Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 9/159 (5%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTG----VPLHYKVIRFHRVIKGFMIQGG 73
           G I + ++ +  PKT  NF  L  G K               Y    FHRVI+GFMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 74  DISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGK 133
           D + G G GG        ++ + EL+ ++  +L+MANAGP TNGSQFFIT  +T HL+ +
Sbjct: 73  DPT-GTGRGGPGYK--FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 134 HVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           H +FG VI  +   VV +I    T  ND P   V I   
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 1e-36
 Identities = 72/155 (46%), Positives = 92/155 (59%), Gaps = 14/155 (9%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I +E++ +  PKT ENF ALC              +Y    FHR IKGFM+Q GD   
Sbjct: 10  GDIKIEVFCERTPKTCENFLALCA-----------SNYYNGCIFHRNIKGFMVQTGD-PT 57

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG SI+G KFEDE +  LKH  +G++SMAN GPNTNGSQFFIT  +  HLD K+ V
Sbjct: 58  GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117

Query: 137 FGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
           FG+VI G+  +  +E +   +    P+ DV I D 
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI 152

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  112 bits (280), Expect = 1e-30
 Identities = 70/154 (45%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I + ++     KT +NF                  +Y    FHRVIK FM+Q GD  +
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGD-PS 58

Query: 78  GDGTGGESIYGLKFEDENFELKHERKG-MLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           GDGTGGESI+G +FEDE F+  +  K  M+SMAN GPNTNGSQFFITT     LD KH V
Sbjct: 59  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDC 170
           FG+V +G  +V  IE V T   D P+ D+ I + 
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  111 bits (279), Expect = 2e-30
 Identities = 74/155 (47%), Positives = 84/155 (54%), Gaps = 13/155 (8%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G   VE+Y    PKT  NF  LC               Y    FHRVI  F+IQGGD   
Sbjct: 26  GDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGD-PT 73

Query: 78  GDGTGGESIYGLKFEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVV 136
           G G GG+SIYG  FEDE N ELKH   G+LSM+N GPNTN SQFFIT     HLDGKH +
Sbjct: 74  GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 133

Query: 137 FGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG 171
           F RV K M  + +I  V T   + PI D+ I    
Sbjct: 134 FARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 6e-30
 Identities = 68/168 (40%), Positives = 85/168 (50%), Gaps = 12/168 (7%)

Query: 4   PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHR 63
           P+   D +I     G I  +++    PKT ENF                  +Y    FHR
Sbjct: 5   PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRN-----------GYYNGHTFHR 53

Query: 64  VIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFIT 123
           +IKGFMIQ GD +     G     G   ++ +  L+H+R   LSMANAG NTNGSQFFIT
Sbjct: 54  IIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFIT 113

Query: 124 TTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDC 170
              T  LD KH VFGRV KGM VV+ I +V      D P  DV+I + 
Sbjct: 114 VVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 2/169 (1%)

Query: 188 GDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE 247
           GDS+PD+P D D    ++   +   + +K  GN  +K Q+++MA++KY K LRY  +   
Sbjct: 3   GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS 60

Query: 248 KEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQA 307
           +   ++   + L+        N  ACKLK+ D +GA+     A+     N KAL+R+ Q 
Sbjct: 61  RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG 120

Query: 308 YMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           +  L + D A+   +KA ++ P D  I+ EL   K+KI  ++++EK  Y
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (247), Expect = 7e-26
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 29/182 (15%)

Query: 3   RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFH 62
            P   L  S G      I +E+     P + +NF                   Y    FH
Sbjct: 4   DPHVLLTTSAG-----NIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFH 47

Query: 63  RVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMA-NAGPNTNGSQFF 121
           RVI GFMIQGG  +        +      ++E        +G ++MA  A  ++  SQFF
Sbjct: 48  RVIPGFMIQGGGFTEQMQQKKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFF 104

Query: 122 ITTTRTSHLD-----GKHVVFGRVIKGMGVVRSIEHVMTGD----NDCPIADVTITDCGE 172
           I     + LD       + VFG+V+KGM V   I  V T D     + P   V I     
Sbjct: 105 INVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164

Query: 173 IP 174
           +P
Sbjct: 165 LP 166

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 99.2 bits (246), Expect = 1e-25
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 18  GRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISA 77
           G I+++ ++D  P+T +NF   C               Y    FHRVI GFMIQ      
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYCR-----------EGFYNNTIFHRVINGFMIQ--GGGF 55

Query: 78  GDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITT--------TRTSH 129
             G   ++       + N  LK+ R  +       P++  +QFFI          +  S 
Sbjct: 56  EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 130 LDGKHVVFGRVIKGMGVVRSIEHVMTGDN----DCPIADVTITDC 170
               + VF  V+ GM  V  I+ V TG +    D P  DV I   
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 91.6 bits (226), Expect = 9e-23
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW M+          +K  G  ++K   Y  A+ +Y K + +      + G+ E +S + 
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSW---LEMEYGLSEKESKAS 59

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
                  F N + C LKL +   A+   + A+     N K L+R+G+A + +N+ ++A  
Sbjct: 60  ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 119

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            FEK L++ P +   + ++ + +KK  E  E++++ Y  MF+
Sbjct: 120 DFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 1e-21
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 9/162 (5%)

Query: 206 SWWMN------AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSL 259
           SW MN          +K  G  ++K+  YK AL +Y+K + +      +      ++   
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKA 57

Query: 260 RKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVE 319
           +  +     N + C LKL     A+     A+    +N K L R+G+A++A+ND + A  
Sbjct: 58  QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA 117

Query: 320 SFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
            F+K L+L PN+   K +LAV +++I  +  +EKK Y  MF+
Sbjct: 118 DFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 159

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 75.0 bits (183), Expect = 6e-17
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFT 268
           + +   IK  GNE +KK +   A+ KY++AL +     E +  D+      +  +     
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--DQILLDKKKNIEISCNL 71

Query: 269 NSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLE 328
           N + C  K  D   A+      ++   +NVKAL++ G A M    ++ A E+  KA  L 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 329 PNDGGIKKELAVAKKKIHERRE 350
           PN+  I+    +   K+ E R+
Sbjct: 132 PNNLDIRNSYELCVNKLKEARK 153

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALR---------------YLDICWEKEGIDEGKSSSLRKTK 263
              +Y++    +A+  YR+A+                  +     E  D   ++      
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 264 SQIFTNSSA-CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFE 322
                N+ A  K + G+++ A+     A+    +   A             +  A+  ++
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 323 KALKLEPNDGGIKKELAVAKKKI 345
           +A+++ P        +    K++
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 9e-08
 Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 1/164 (0%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDI-CWEKE 249
             +      ++                       +     A+        +         
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 250 GIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
                K+ +L       + N      +      A+     A+    ++          Y 
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248

Query: 310 ALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK 353
               +D A++++ +A++L+P+       LA A K+     E E 
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 25/87 (28%)

Query: 275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
            + GD + A        R   DN   L      +     +D +      A+K  P     
Sbjct: 10  YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69

Query: 335 KKELAVAKKKIHERREQEKKQYRKMFQ 361
              L    K+  + +E  +     +  
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALRL 96

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 18/91 (19%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
            +  Y+  D++ A R   +  R                       + +    S+   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR------------------QEPDNTGVLLLLSSIHFQCR 47

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYM 309
            L  +   +  A++      +A    G  Y 
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%)

Query: 193 DWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGID 252
                 D     L       DS+    N   ++ + + A+R YRKAL             
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE------------ 333

Query: 253 EGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALN 312
                 +    +   +N ++   + G L+ AL+  + A+R       A    G     + 
Sbjct: 334 ------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 313 D 313
           D
Sbjct: 388 D 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRK 358
                       D +AA     +  + EP++ G+   L+    +   R ++       
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTL 58

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 23/154 (14%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
             +K  GN  +  + Y  A   Y +A+                        +  +TN + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRAL 46

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND- 331
           C LK+   + AL D   A+     +VKA F  GQ  + +   D A+ + ++A  L     
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 332 ----GGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
                 I   L +AKKK     E+ +        
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELH 140

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 26/140 (18%)

Query: 216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKL 275
           K  GN+ YKK+D+  AL+ Y KA                    L  T     TN +A   
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKA------------------KELDPTNMTYITNQAAVYF 49

Query: 276 KLGDLKGALLDTEFAMRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLE 328
           + GD        E A+  G +N        KA  R G +Y        A+  + K+L   
Sbjct: 50  EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

Query: 329 PNDGGIKKELAVAKKKIHER 348
                + K+   A+K + E+
Sbjct: 110 RTP-DVLKKCQQAEKILKEQ 128

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 3e-09
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSS 271
           V+ +K  GN+     +   AL+ Y +A++                +     +        
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG-- 60

Query: 272 ACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
                              +    D  K   R+  A   LN  + A  ++E+ LK E N+
Sbjct: 61  ----------------CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104

Query: 332 GGIKKELAVAKKK 344
             +K+ L   + +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 213 DSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSA 272
           + +K   N+++K +DY+ A++ Y +A+                           + N S 
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSL 52

Query: 273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG 332
             L+      AL D   A+      +K  +R+  + MAL    AA+  +E  +K++P+D 
Sbjct: 53  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112

Query: 333 GIKKELAVAKKKIHERREQE 352
             K +     K + ++  + 
Sbjct: 113 DAKMKYQECNKIVKQKAFER 132

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 13/126 (10%)

Query: 220 NEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD 279
           NE    +D     +K++                   S S +   +     +         
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA-----------GSVSKSTQFEYAWCLVRT--RYNDDIR 53

Query: 280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA 339
               LL+        ++    +F        L + + A++     L+ EP +   K+   
Sbjct: 54  KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

Query: 340 VAKKKI 345
           +  K +
Sbjct: 114 LIDKAM 119

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G  +   ++   A + + +++                     K    I     A     G
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL 338
           +    +      ++      + L+     Y    +   A E    A  ++      K + 
Sbjct: 103 NQ--LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

Query: 339 AVAK 342
           A+  
Sbjct: 161 AMEC 164

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 21/116 (18%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
           G     K+D+K AL  +                            S+I  N       L 
Sbjct: 12  GVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILK 50

Query: 279 DLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGI 334
           ++  A      ++        A F++G  Y      D A++  ++AL     +  I
Sbjct: 51  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 106

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 27/176 (15%)

Query: 184 FFNDGDSY---PDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALR 240
            FN G  Y    +           ++   +   +    G  +Y+ + Y +A++  ++AL 
Sbjct: 39  CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 98

Query: 241 YLDICWEKEGIDEGKSSSLRKTKSQ-IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVK 299
            L      + ID        K  +  +  N +    K  + K A      A     +   
Sbjct: 99  QLR---GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-- 153

Query: 300 ALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ 355
                       + +D A+E   K    EP        + +   ++    E++  Q
Sbjct: 154 ----------RHSKIDKAMECVWKQKLYEP--------VVIPVGRLFRPNERQVAQ 191

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 16/162 (9%), Positives = 40/162 (24%), Gaps = 8/162 (4%)

Query: 200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEG----- 254
           +  +  S W      +     +       ++      K L  +   +  +  D+      
Sbjct: 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232

Query: 255 KSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDV 314
           +    R         S      L     +  + +    +    +  +    +A   L   
Sbjct: 233 RWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 292

Query: 315 DAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
              ++ F     ++P       +L     K        K +Y
Sbjct: 293 KETLQYFSTLKAVDPMRAAYLDDLR---SKFLLENSVLKMEY 331

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 17/144 (11%)

Query: 219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG 278
                   +Y  A    R+A+           +   ++       +      +     L 
Sbjct: 16  AQRQLVAGEYDEAAANCRRAMEI------SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 69

Query: 279 DLKGALLDTEFAMR-----------DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKL 327
               AL   + A+            +G   + A++ +  A   L     A+  F+K +++
Sbjct: 70  SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129

Query: 328 EPNDGGIKKELAVAKKKIHERREQ 351
                G         +   +R  Q
Sbjct: 130 IEERKGETPGKERMMEVAIDRIAQ 153

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 13/160 (8%), Positives = 35/160 (21%), Gaps = 27/160 (16%)

Query: 198 LDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSS 257
            +                   G    K+      ++    +  Y+               
Sbjct: 113 FNVDLPCRVKSSQ-------LGIISNKQTHTSAIVKPQSSSCSYIC-------------- 151

Query: 258 SLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA 317
                      +             A      A +    N +   +      +  D    
Sbjct: 152 ------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205

Query: 318 VESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYR 357
           +  + +++ ++         L  A  K  E R++ K ++ 
Sbjct: 206 IFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWG 245

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 21/175 (12%), Positives = 45/175 (25%), Gaps = 20/175 (11%)

Query: 191 YPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICW---- 246
            P +   +                 K           +      +  A+R          
Sbjct: 117 TPAYAHLVTPAEEGAGGAGL--GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174

Query: 247 --------------EKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMR 292
                         +K       + S+R     ++    A        + A+     A+ 
Sbjct: 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234

Query: 293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE 347
                +++ +  G + + L     AVE F +AL ++    G + E     + I  
Sbjct: 235 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 289

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 297 NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
           +    F +G   +   D+  AV  FE A++ +P      + L   + +  E+        
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISAL 76

Query: 357 RKMFQ 361
           R+  +
Sbjct: 77  RRCLE 81

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 6/156 (3%)

Query: 207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQI 266
                 + +           +       Y +                    +        
Sbjct: 194 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253

Query: 267 FTNSSACKLKLGDLKGA------LLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVES 320
           + N +  ++ LG+ + A      L +   ++R   D  + L    Q Y        A   
Sbjct: 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 313

Query: 321 FEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQY 356
              ALKL    G I   +   +    + R+  +   
Sbjct: 314 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 290 AMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
            +R+   + +    + Q  +   + D A    + AL+  P  
Sbjct: 4   DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 45

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMFQ 361
           Q +  ++   +  A+E   +A+K  P D  ++              E+  +Q  +  +
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIK 58

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 283 ALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPND 331
              D        +   +  F  G+ Y++L D+D+A   F+ A+    ++
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.92
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.66
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.52
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.48
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.36
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.27
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.04
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.01
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.98
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.93
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.87
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.7
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.56
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.19
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.18
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.65
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.56
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.52
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.26
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.88
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	89.57
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	86.42
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.91

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=1.2e-47  Score=321.31  Aligned_cols=171  Identities=61%  Similarity=1.083  Sum_probs=160.8

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      |+||+|||||+|+++++|+|+||||.+.||.||+||++||++..+.. ..++.++|+|+.||||+++++||+|++..+++
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~-~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~   79 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIG-KSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG   79 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBC-TTSSBSCCTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhcccccc-ccCcccccCCcceeEEEecceEEcCCccCCCC
Confidence            99999999999999999999999999999999999999999876543 24566799999999999999999999998899


Q ss_pred             CCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCc
Q 018098           81 TGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDC  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~  160 (361)
                      +++.++++..+++|.....|+.+|+|||++.+|++++|||||++.+.|+||++|+|||+|++|||+|++|+..++.. +.
T Consensus        80 ~~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~  158 (172)
T d2igva1          80 TGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GK  158 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-SC
T ss_pred             CCCcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCC-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987654 89


Q ss_pred             cccceEecccccc
Q 018098          161 PIADVTITDCGEI  173 (361)
Q Consensus       161 P~~~v~I~~~~~l  173 (361)
                      |..+|.|.+|+++
T Consensus       159 P~~~i~I~~cG~l  171 (172)
T d2igva1         159 PVKDCMIADCGQL  171 (172)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CCCCeEEEecccc
Confidence            9999999999987

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-46  Score=316.49  Aligned_cols=180  Identities=65%  Similarity=1.087  Sum_probs=167.3

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      +||+|||||+|+++++|+|+||||.+.||+||+||++||+++.+.....++..+|+|+.||||++++++|+|++....++
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~   92 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGT   92 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCC
Confidence            48999999999999999999999999999999999999998866655555667999999999999999999998888888


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++...++..+++++....|+.+|+|+|++.++++++|||||++++.|+||++|+|||+|++|||+|++|+.++++. +.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~-~~P  171 (195)
T d1ihga2          93 GGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP  171 (195)
T ss_dssp             CCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred             CCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCC-CCc
Confidence            8888899999999999999999999999999999999999999999999999999999999999999999998875 899


Q ss_pred             ccceEeccccccCCCCCCCCC
Q 018098          162 IADVTITDCGEIPEGADDGIS  182 (361)
Q Consensus       162 ~~~v~I~~~~~l~~~~~~~l~  182 (361)
                      ..+|+|.+|++++.+.++++.
T Consensus       172 ~~~i~I~~cG~l~~~~~~~~~  192 (195)
T d1ihga2         172 AKLCVIAECGELKEGDDWGIF  192 (195)
T ss_dssp             SSCEEEEEEEEECTTCCCCCS
T ss_pred             CCCeEEEECcccCCCCcCCCC
Confidence            999999999999988777654

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=305.00  Aligned_cols=161  Identities=57%  Similarity=0.951  Sum_probs=150.5

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+++++|+|+|+||.+.||+||+||++||+..++        .+|+|+.||||+|+++||+|++....+.+
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~   72 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHNGTG   72 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccc--------cccCCcEEEEEEEeeeEEeeeccCCCCCC
Confidence            8999999999999999999999999999999999999976532        18999999999999999999999888888


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.+.++..++++....+|+.+|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||+|++|+...+. ++.|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~-~~~P~  151 (161)
T d2r99a1          73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPK  151 (161)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCS
T ss_pred             CccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCC-CCcCC
Confidence            88999988888999999999999999999999999999999999999999999999999999999999887654 58999


Q ss_pred             cceEeccccc
Q 018098          163 ADVTITDCGE  172 (361)
Q Consensus       163 ~~v~I~~~~~  172 (361)
                      .+|.|.+|+.
T Consensus       152 ~~i~I~~CGe  161 (161)
T d2r99a1         152 QKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCEEEEeCCC
Confidence            9999999974

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=306.20  Aligned_cols=163  Identities=58%  Similarity=0.948  Sum_probs=154.0

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+|+++|+|+||||.+.||.||+||++||+++++.        +|+|+.||||++++++|+|++....++
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~g~~~~~~~~   72 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------GYKGSTFHRVIPSFMCQAGDFTNHNGT   72 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCc--------ccCCcEEEEecccceEecCCccCCCCC
Confidence            499999999999999999999999999999999999999876332        799999999999999999999888888


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++.+.++..++++.+.+.|+.+|+||||+.++++++|||||++.+.|+||++|+|||+|++|||+|++|++++++. ++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~-~~P  151 (164)
T d2z6wa1          73 GGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKS-GRT  151 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTT-SCC
T ss_pred             CCccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCC-CCC
Confidence            8899999999999888999999999999999999999999999999999999999999999999999999998875 889


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|+|.+|+++
T Consensus       152 ~~~i~I~~cG~l  163 (164)
T d2z6wa1         152 SKKIVITDCGQL  163 (164)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeCeec
Confidence            999999999987

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2.3e-45  Score=308.37  Aligned_cols=172  Identities=58%  Similarity=0.987  Sum_probs=162.6

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .|++|||||+|+++++|+|+||||.+.||.||+||+.||+++.+.+...++.++|+|+.||||+++++||+|++..++++
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            37899999999999999999999999999999999999999877766667778999999999999999999999888888


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++.+.++..+.++....+|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||+|++|+.++++.++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|.|.+|+++
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999876

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.4e-45  Score=306.85  Aligned_cols=169  Identities=59%  Similarity=0.958  Sum_probs=156.5

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|||||+|+++++|+|+||||++.||+||+||+.||++.....  .++..+|+|+.||||+++++||+|++..++++
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~--~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~   79 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGS--RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGS   79 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECT--TSSEECCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccc--cCccCccCcccceEEEeCceEEecCccCCCCC
Confidence            5899999999999999999999999999999999999998753321  24445999999999999999999999988888


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      ++..+++..++++.+.+.|+.+|+|+|++.+|++++|||||++.+.|+||++|+|||+|++|||+|++|++.+++. +.|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~-g~P  158 (170)
T d1qnga_          80 GGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYV  158 (170)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT-CCC
T ss_pred             CCcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCC-cCC
Confidence            8888999999999999999999999999999999999999999999999999999999999999999999988776 789


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|+|.+|+++
T Consensus       159 ~~~i~I~~CG~l  170 (170)
T d1qnga_         159 KRSVVITDCGEL  170 (170)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             ccCEEEEeeEcC
Confidence            999999999875

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=1.4e-44  Score=299.37  Aligned_cols=160  Identities=61%  Similarity=0.996  Sum_probs=150.2

Q ss_pred             eEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCC
Q 018098            5 RCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGE   84 (361)
Q Consensus         5 ~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~   84 (361)
                      .|||||+|+|+++|+|+||||.+.||.||+||++||+++.++        +|+|+.||||+|+++||+|++..+++.++.
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF--------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC--------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            599999999999999999999999999999999999987432        599999999999999999999988888888


Q ss_pred             ccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccc
Q 018098           85 SIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIAD  164 (361)
Q Consensus        85 ~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~  164 (361)
                      ++++..|.+|+..++|+.+|+|+|++.+||+++|||||++.+.|+||++|+|||+|++|+|+|++|+...+. +++|..+
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~-~~~P~~~  153 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSG-SGKPRSR  153 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSC
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCC-CCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999886654 5899999


Q ss_pred             eEecccccc
Q 018098          165 VTITDCGEI  173 (361)
Q Consensus       165 v~I~~~~~l  173 (361)
                      |.|.+|++.
T Consensus       154 i~I~~cgv~  162 (162)
T d2cfea1         154 IEIAKCGVC  162 (162)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeEcC
Confidence            999999874

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=303.97  Aligned_cols=169  Identities=57%  Similarity=0.967  Sum_probs=153.3

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      +||+|||||+|+++++|+|+|+||.+.||+||+||++||+.+-..   .++...|+++.||||++++++|+|++..+.+.
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~---~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK---DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEE---TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccc---cCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            499999999999999999999999999999999999999976110   01112399999999999999999999877777


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      .....++.+++++.+...|+.+|+|+|++.+|++++|||||++++.|+||++|+|||+|++||++|++|++++++.++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            77777788888888888999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccceEecccccc
Q 018098          162 IADVTITDCGEI  173 (361)
Q Consensus       162 ~~~v~I~~~~~l  173 (361)
                      ..+|+|.+||.+
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999864

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=5.6e-44  Score=302.49  Aligned_cols=168  Identities=49%  Similarity=0.923  Sum_probs=155.7

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      ||+|||||+|+|+++|+|+||||.|.||+||+||++||+++.+..   .+...|+|+.||||++++++|||++....+.+
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~---~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~   92 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN---NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG   92 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS---SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccC---CcccccCCCeeeeeecceeeecCCccccCCcc
Confidence            899999999999999999999999999999999999999874332   23346999999999999999999998888888


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeC--hHHHHHHhccCCCC-CC
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKG--MGVVRSIEHVMTGD-ND  159 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g--~~vl~~i~~~~~~~-~~  159 (361)
                      ..+++|..++++.....|+++|+++|++.+|++++|||||++++.|+||++|+|||+|++|  ||++++|+.++++. .+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~  172 (186)
T d1z81a1          93 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  172 (186)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             cccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCC
Confidence            8889999999999999999999999999999999999999999999999999999999999  99999999998875 57


Q ss_pred             ccccceEecccccc
Q 018098          160 CPIADVTITDCGEI  173 (361)
Q Consensus       160 ~P~~~v~I~~~~~l  173 (361)
                      .|..+|+|.+|+++
T Consensus       173 ~P~~~i~I~~CGel  186 (186)
T d1z81a1         173 KPKIPINVVECGEL  186 (186)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             ccCCCEEEEeCCcC
Confidence            89999999999874

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=1e-43  Score=299.86  Aligned_cols=163  Identities=60%  Similarity=0.946  Sum_probs=155.0

Q ss_pred             CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC
Q 018098            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      ++|||||+|+|+++|+|+||||.+.||+||+||++||+++++        .+|+|+.||||++++++|+|++...+++++
T Consensus         8 ~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~--------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   79 (182)
T d2rmca_           8 DKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG--------YGYKGSIFHRVIKDFMIQGGDFTARDGTGG   79 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCCSSSSSSCC
T ss_pred             CeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCC--------ccccCceeeeeecCceEEcCCCCCCCCCCC
Confidence            479999999999999999999999999999999999987632        279999999999999999999988888999


Q ss_pred             CccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcccc
Q 018098           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .++++..+++++..+.|+.+|+|+|++.++++++|||||++.+.++||++|+|||+|++||++|++|+.++++.++.|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~  159 (182)
T d2rmca_          80 MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLT  159 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSS
T ss_pred             CCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEeccccccC
Q 018098          164 DVTITDCGEIP  174 (361)
Q Consensus       164 ~v~I~~~~~l~  174 (361)
                      +|+|.+|+++.
T Consensus       160 ~v~I~~~g~l~  170 (182)
T d2rmca_         160 DCTIVNSGKID  170 (182)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEeeEEe
Confidence            99999999985

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.5e-44  Score=303.77  Aligned_cols=165  Identities=54%  Similarity=0.876  Sum_probs=155.9

Q ss_pred             CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC
Q 018098            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      .+|||||+|+|+++|+|+||||.+.||+||+||++||+++++        .+|+|+.||||+|+|+||||++..++++++
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~--------~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~   78 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKG--------EGYPGSKFHRVIADFMIQGGDFTRGDGTGG   78 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhccc--------CCcCCceEEEEEecceEEcCCCCCCCCCCC
Confidence            379999999999999999999999999999999999986532        289999999999999999999998899999


Q ss_pred             CccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcccc
Q 018098           84 ESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIA  163 (361)
Q Consensus        84 ~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~  163 (361)
                      .+.++..+.++.....|+.+|+++|++.++++++|||||++.+.|+||++|+|||+|++||+++++|+++.++.++.|..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~  158 (182)
T d1h0pa_          79 RSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQ  158 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESS
T ss_pred             CCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             ceEeccccccCCC
Q 018098          164 DVTITDCGEIPEG  176 (361)
Q Consensus       164 ~v~I~~~~~l~~~  176 (361)
                      +|.|.+|+++...
T Consensus       159 ~v~I~~cG~l~~~  171 (182)
T d1h0pa_         159 DVIIAASGHIAVD  171 (182)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEECCeEeCC
Confidence            9999999988643

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2e-43  Score=293.94  Aligned_cols=162  Identities=53%  Similarity=0.928  Sum_probs=149.1

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      .++|||||+|+++++|+|+||||.+.||.||+||++||+++.+.        +|+|+.|||++|++++|+|++...++++
T Consensus         5 t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~--------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~   76 (166)
T d1xo7a_           5 TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF--------GYKGSIFHRVIRNFMIQGGDFTNFDGTG   76 (166)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC--------CSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc--------cccCcEEEEEcCCCEEEeCCCCCCCCCC
Confidence            57899999999999999999999999999999999999987322        3999999999999999999999888888


Q ss_pred             CCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           83 GESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        83 ~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      +.+.++..++++.. ..|+.+|+|+|++.+||+++|||||++++.|+||++|+|||+|++||++|++|++++++.++.|.
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~  155 (166)
T d1xo7a_          77 GKSIYGTRFDDENL-KIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPK  155 (166)
T ss_dssp             CCBTTBSCBCCCCC-CSCCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBS
T ss_pred             CCCCCCcccccccc-cccccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCC
Confidence            88877777777665 45667899999999999999999999999999999999999999999999999999998889999


Q ss_pred             cceEecccccc
Q 018098          163 ADVTITDCGEI  173 (361)
Q Consensus       163 ~~v~I~~~~~l  173 (361)
                      .+|.|.+|+++
T Consensus       156 ~~i~I~~cgvl  166 (166)
T d1xo7a_         156 KAVKINDCGVL  166 (166)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeeEeC
Confidence            99999999975

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-41  Score=280.58  Aligned_cols=152  Identities=50%  Similarity=0.837  Sum_probs=143.1

Q ss_pred             CCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCC
Q 018098            3 RPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTG   82 (361)
Q Consensus         3 ~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~   82 (361)
                      +|+|+|+++     +|+|+||||.+.||+||+||++||+.+           ||+|+.||||+++|+|||||+. +.+++
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG-----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHT-----------SSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            789999998     699999999999999999999999987           9999999999999999999986 67888


Q ss_pred             CCccCCCCCCCCc-cccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCcc
Q 018098           83 GESIYGLKFEDEN-FELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCP  161 (361)
Q Consensus        83 ~~~~~~~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P  161 (361)
                      +.++++..+++|. ..+.|+++|+|+|++.+||+++|||||++++.++||++|+|||+|++|++++++|++++++.++.|
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  153 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCB
T ss_pred             CccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCC
Confidence            8889999999885 468899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEecccc
Q 018098          162 IADVTITDCG  171 (361)
Q Consensus       162 ~~~v~I~~~~  171 (361)
                      ..+|+|..+.
T Consensus       154 ~~~I~I~~a~  163 (166)
T d1xwna1         154 VDDVKIIKAY  163 (166)
T ss_dssp             SSCCCEEEEE
T ss_pred             CCCeEEEEee
Confidence            9999998764

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-41  Score=277.68  Aligned_cols=156  Identities=47%  Similarity=0.742  Sum_probs=140.7

Q ss_pred             CCCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCC
Q 018098            1 MARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDG   80 (361)
Q Consensus         1 ~~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~   80 (361)
                      ||   |.|+++     +|+|+||||.+.||+||+||++||+++           ||+|+.||||+++++|||||+.. .+
T Consensus         1 ms---V~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~Gd~~~-~~   60 (159)
T d2ok3a1           1 MS---VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN-----------YYNGCIFHRNIKGFMVQTGDPTG-TG   60 (159)
T ss_dssp             CE---EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTS-SS
T ss_pred             CE---EEEEeC-----CeEEEEEEcCCCChHHHHHHHHHHhhh-----------cccceeEecccCCeEEEeCCccc-cC
Confidence            66   666665     899999999999999999999999998           99999999999999999999874 45


Q ss_pred             CCCCccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCC-
Q 018098           81 TGGESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDN-  158 (361)
Q Consensus        81 ~~~~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~-  158 (361)
                      .++...++..+++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||+++++|++++++.. 
T Consensus        61 ~~~~~~~~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~  140 (159)
T d2ok3a1          61 RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKT  140 (159)
T ss_dssp             SCCCCTTSSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTT
T ss_pred             CCCcccCCCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCC
Confidence            5566677888887754 68899999999999999999999999999999999999999999999999999999998764 


Q ss_pred             CccccceEeccccccCCC
Q 018098          159 DCPIADVTITDCGEIPEG  176 (361)
Q Consensus       159 ~~P~~~v~I~~~~~l~~~  176 (361)
                      +.|..+|+|.+|.++..|
T Consensus       141 ~~P~~~i~I~~v~i~~~P  158 (159)
T d2ok3a1         141 YRPLNDVHIKDITIHANP  158 (159)
T ss_dssp             CCBSSCCBEEEEEEECCS
T ss_pred             CCcCCCcEEEEEEEEeCC
Confidence            679999999999988655

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1.1e-41  Score=284.34  Aligned_cols=162  Identities=53%  Similarity=0.893  Sum_probs=120.3

Q ss_pred             CeEEEEEE-----eCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCC
Q 018098            4 PRCFLDIS-----IGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAG   78 (361)
Q Consensus         4 ~~v~~~~~-----~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~   78 (361)
                      |+|||||+     ++.|++|+|+||||.+.||+||+||++||+++.+.        .|+++.||||+|++++|+|++..+
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~--------~y~~~~f~ri~~~~~iq~G~~~~~   73 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE--------GYRESTFHRIIPNFMIQGGDFTRG   73 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTT--------SSTTCBCCEEETTTEEEECC----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccc--------cccCceeeEEEEEEeeEcCCccCC
Confidence            58999998     77789999999999999999999999999976322        499999999999999999999888


Q ss_pred             CCCCCCccCCCCCCCCccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEE--eChHHHHHHhccCCC
Q 018098           79 DGTGGESIYGLKFEDENFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTG  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~--~g~~vl~~i~~~~~~  156 (361)
                      +++++.+.++..+.++...+.|+++|+|||++.+|++++|||||++++.|+||++|+|||+|+  +|++++++|+.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~  153 (171)
T d2c3ba1          74 NGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSS  153 (171)
T ss_dssp             ------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCC
Confidence            888888888888888888899999999999999999999999999999999999999999999  499999999999988


Q ss_pred             CC-CccccceEecccccc
Q 018098          157 DN-DCPIADVTITDCGEI  173 (361)
Q Consensus       157 ~~-~~P~~~v~I~~~~~l  173 (361)
                      .. ..|..++.|.+|+.+
T Consensus       154 ~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         154 SGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             TSCCCSSSCCEEEEEEEC
T ss_pred             CCCcCCCCCEEEEeCccC
Confidence            74 468999999999864

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.4e-40  Score=269.67  Aligned_cols=145  Identities=50%  Similarity=0.742  Sum_probs=136.0

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||.+.||+||+||++||+++           ||+|+.||||+++++|||||+. +.+.++.+.+|..++++
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~   75 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSING-----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDE   75 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhCC-----------ccccceeeeeeecceeeccCCC-CCCcCCcccCCCccccc
Confidence            34899999999999999999999999987           9999999999999999999986 56778888999999998


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccccceEecccc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPIADVTITDCG  171 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~~~v~I~~~~  171 (361)
                      .. .+.|.++|+++|++.+||+++|||||++++.|+||++|+|||+|++||+++++|++++++.++.|..+|+|.++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~  153 (155)
T d2fu0a1          76 FFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK  153 (155)
T ss_dssp             CBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEE
T ss_pred             cccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEE
Confidence            77 578889999999999999999999999999999999999999999999999999999999999999999998874

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-40  Score=274.61  Aligned_cols=151  Identities=44%  Similarity=0.719  Sum_probs=139.8

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |+.|+|+||||.+.||+||+||++||+++           ||+|+.||||+|+++||||++. ..|+++.+.++.++++|
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E   74 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKH-----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDE   74 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcC-----------CcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCc
Confidence            44899999999999999999999999987           9999999999999999999976 57888888899999988


Q ss_pred             cc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCC-CCccccceEeccccc
Q 018098           95 NF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGE  172 (361)
Q Consensus        95 ~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~-~~~P~~~v~I~~~~~  172 (361)
                      .. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++. ++.|..+|+|.++.+
T Consensus        75 ~~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~I  154 (178)
T d1zkca1          75 FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV  154 (178)
T ss_dssp             CCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEE
T ss_pred             cccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEE
Confidence            54 6899999999999999999999999999999999999999999999999999999998864 579999999999999


Q ss_pred             cCCCC
Q 018098          173 IPEGA  177 (361)
Q Consensus       173 l~~~~  177 (361)
                      +..++
T Consensus       155 l~~pf  159 (178)
T d1zkca1         155 FVDPY  159 (178)
T ss_dssp             EECTT
T ss_pred             EcCCc
Confidence            86553

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.5e-39  Score=269.56  Aligned_cols=151  Identities=48%  Similarity=0.711  Sum_probs=136.9

Q ss_pred             CeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCC
Q 018098            4 PRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGG   83 (361)
Q Consensus         4 ~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~   83 (361)
                      ..|.|+++     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||++++++|||++. +.+.++
T Consensus        17 ~~V~l~T~-----~G~i~IeL~~d~aP~tv~nF~~L~~~g-----------~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~   79 (169)
T d2b71a1          17 GYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG-----------FYDNTIFHRVIPNFVIQGGDPT-GTGKGG   79 (169)
T ss_dssp             CEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred             cEEEEEeC-----ceeEEEEEeCCCCcHHHHHHHHHhhCC-----------ccceeeeccccceeeEeccccc-cccCCC
Confidence            34555554     899999999999999999999999987           9999999999999999999976 455667


Q ss_pred             CccCCCCCCCCcc-ccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCCCCccc
Q 018098           84 ESIYGLKFEDENF-ELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGDNDCPI  162 (361)
Q Consensus        84 ~~~~~~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~~~~P~  162 (361)
                      .++.+..+++|.. .++|.++|+|+|++.+|++++|||||++++.|+||++|+|||+|++|||+|++|++++++.++.|.
T Consensus        80 ~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~  159 (169)
T d2b71a1          80 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI  159 (169)
T ss_dssp             CBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBS
T ss_pred             ccccccccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCC
Confidence            7777888888754 688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEecccc
Q 018098          163 ADVTITDCG  171 (361)
Q Consensus       163 ~~v~I~~~~  171 (361)
                      .+|+|.++.
T Consensus       160 ~~i~I~~~~  168 (169)
T d2b71a1         160 FDLKILRTS  168 (169)
T ss_dssp             SCCEEEEEE
T ss_pred             CCeEEEEcc
Confidence            999998764

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-39  Score=268.51  Aligned_cols=154  Identities=32%  Similarity=0.495  Sum_probs=136.2

Q ss_pred             CCCeEEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCC
Q 018098            2 ARPRCFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGT   81 (361)
Q Consensus         2 ~~~~v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~   81 (361)
                      .||+|+|+++     .|+|+||||.+.||+||+||++||+++           ||+|+.||||+++|++|+|+.....+.
T Consensus         3 g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~-----------~Y~g~~fhRv~~~~~iq~G~~~~~~~~   66 (166)
T d1v9ta_           3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG-----------FYNNTTFHRVIPGFMIQGGGFTEQMQQ   66 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBEEEEETTTEEEESSBCTTCCB
T ss_pred             CCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCC-----------ccccceeeEEEEEeecccCCcCCcccc
Confidence            4899999998     799999999999999999999999987           999999999999999999998755444


Q ss_pred             CCCccCCCCCCCCccccCCCCceEEEeecC-CCCCCCcceEEecCCCCCCCC-----CceEEeEEEeChHHHHHHhccCC
Q 018098           82 GGESIYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRTSHLDG-----KHVVFGRVIKGMGVVRSIEHVMT  155 (361)
Q Consensus        82 ~~~~~~~~~~~~e~~~~~~~~~g~l~~~~~-~~~~~~sqF~I~~~~~~~ld~-----~~~vfG~V~~g~~vl~~i~~~~~  155 (361)
                      +   .++.++++|.....|+.+|+|+|++. ++++++|||||++.+.|+||+     +|+|||+|++|||++++|+++++
T Consensus        67 ~---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~  143 (166)
T d1v9ta_          67 K---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT  143 (166)
T ss_dssp             C---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCE
T ss_pred             c---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcc
Confidence            3   35778899987767778899999885 499999999999999988886     48999999999999999999987


Q ss_pred             CCC----CccccceEeccccccC
Q 018098          156 GDN----DCPIADVTITDCGEIP  174 (361)
Q Consensus       156 ~~~----~~P~~~v~I~~~~~l~  174 (361)
                      +..    +.|..+|+|.+|++++
T Consensus       144 ~~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         144 HDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EEETTEEEEESSCCBEEEEEECC
T ss_pred             cCCCCCCCccCCCeEEEEEEEcC
Confidence            653    3799999999998873

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-37  Score=256.17  Aligned_cols=154  Identities=44%  Similarity=0.707  Sum_probs=132.0

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCC----CCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGP----NTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLK   90 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~----~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~   90 (361)
                      |+.|+|+||||.+.||+||+||++||+++++++.    ...+..||+|+.|||+++++++|||++. +.+.+++   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~-~~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-SSSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEccccc-CCCCCCc---ccc
Confidence            3489999999999999999999999998876543    1334458999999999999999999976 3333333   233


Q ss_pred             CCCC-ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEE--eChHHHHHHhccCCCCCCccccceEe
Q 018098           91 FEDE-NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVI--KGMGVVRSIEHVMTGDNDCPIADVTI  167 (361)
Q Consensus        91 ~~~e-~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~--~g~~vl~~i~~~~~~~~~~P~~~v~I  167 (361)
                      +++| ...++|+++|+|+|++.+||+++|||||++++.|+||++|+|||+|+  +||++|++|++++++.++.|..+|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4555 44688999999999999999999999999999999999999999999  49999999999999999999999999


Q ss_pred             ccccc
Q 018098          168 TDCGE  172 (361)
Q Consensus       168 ~~~~~  172 (361)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88753

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=257.73  Aligned_cols=146  Identities=47%  Similarity=0.666  Sum_probs=128.0

Q ss_pred             eeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCccCCCCCCCC
Q 018098           15 ELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDE   94 (361)
Q Consensus        15 ~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e   94 (361)
                      |++|+|+||||.+.||+||+||++||+.+           ||+|+.|||+++++++|+|++......+... ....++++
T Consensus        16 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g-----------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~-~~~~~~~~   83 (164)
T d2a2na1          16 TSMGDIHTKLFPVECPKTVENFCVHSRNG-----------YYNGHTFHRIIKGFMIQTGDPTGTGMGGESI-WGGEFEDE   83 (164)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT-----------TTTTCBCCEEETTTEEEECCTTSSSSCCCCT-TSSCBCCC
T ss_pred             eceeEEEEEEcCCCChHHHHHHHHHHhCC-----------CcccceeeEEeeeeeEeecccccccCCCcee-eecccccc
Confidence            45899999999999999999999999987           9999999999999999999987544333333 33344444


Q ss_pred             -ccccCCCCceEEEeecCCCCCCCcceEEecCCCCCCCCCceEEeEEEeChHHHHHHhccCCCC-CCccccceEeccccc
Q 018098           95 -NFELKHERKGMLSMANAGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVMTGD-NDCPIADVTITDCGE  172 (361)
Q Consensus        95 -~~~~~~~~~g~l~~~~~~~~~~~sqF~I~~~~~~~ld~~~~vfG~V~~g~~vl~~i~~~~~~~-~~~P~~~v~I~~~~~  172 (361)
                       ...++|+++|+++|++.++++++|||||++++.|+||++|+|||+|++||++|++|++++++. ++.|..+|+|.++.+
T Consensus        84 ~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          84 FHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             CCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence             457889999999999999999999999999999999999999999999999999999999975 479999999988753

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-37  Score=252.87  Aligned_cols=149  Identities=32%  Similarity=0.516  Sum_probs=126.5

Q ss_pred             EEEEEEeCCeeeeEEEEEEcCCCCCcchHhHHhhhccCCCCCCCCCCCceeeeeEEEEeecCcEEEeCCCCCCCCCCCCc
Q 018098            6 CFLDISIGVELEGRIIVEIYNDVIPKTAENFRALCTGEKGIGPNTGVPLHYKVIRFHRVIKGFMIQGGDISAGDGTGGES   85 (361)
Q Consensus         6 v~~~~~~~~~~~G~i~ieL~~~~~P~~~~nf~~l~~~~~~~~~~~~~~~~y~~~~~~rv~~~~~iq~G~~~~~~~~~~~~   85 (361)
                      |.|+++     .|+|+||||.+.||+||+||++||+.+           ||+|+.||||+++|++|+|++....+.+   
T Consensus         2 V~l~T~-----~G~i~ieL~~~~aP~t~~nF~~l~~~g-----------~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---   62 (164)
T d1lopa_           2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG-----------FYNNTIFHRVINGFMIQGGGFEPGMKQK---   62 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT-----------TTTTEECCEEETTTEEEESSEETTTEEC---
T ss_pred             EEEEeC-----CeEEEEEEcCCCCHHHHHHHHHHHHcc-----------CcCCceeeEEcCCceeeeeccccCCcCC---
Confidence            556555     899999999999999999999999987           9999999999999999999986544332   


Q ss_pred             cCCCCCCCCccccCCCCceEEEeecC-CCCCCCcceEEecCCC--------CCCCCCceEEeEEEeChHHHHHHhccCCC
Q 018098           86 IYGLKFEDENFELKHERKGMLSMANA-GPNTNGSQFFITTTRT--------SHLDGKHVVFGRVIKGMGVVRSIEHVMTG  156 (361)
Q Consensus        86 ~~~~~~~~e~~~~~~~~~g~l~~~~~-~~~~~~sqF~I~~~~~--------~~ld~~~~vfG~V~~g~~vl~~i~~~~~~  156 (361)
                      .++.++++|.....++.+|.|+|++. +|++++|||||++.+.        |++|++|+|||+|++|+++|++|+.++++
T Consensus        63 ~~~~~~~~e~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~  142 (164)
T d1lopa_          63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATG  142 (164)
T ss_dssp             CCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             ccCCCccccccccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcC
Confidence            34777888866555667788888875 5999999999999765        78999999999999999999999999886


Q ss_pred             CC----CccccceEecccccc
Q 018098          157 DN----DCPIADVTITDCGEI  173 (361)
Q Consensus       157 ~~----~~P~~~v~I~~~~~l  173 (361)
                      ..    +.|..+|+|.++.+.
T Consensus       143 ~~~~~~~~P~~~v~I~~v~I~  163 (164)
T d1lopa_         143 RSGMHQDVPKEDVIIESVTVS  163 (164)
T ss_dssp             EETTEEEEESSCCEEEEEEEC
T ss_pred             CCCCcCCCcCCCeEEEEEEEe
Confidence            54    379999999887543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=5.8e-25  Score=182.56  Aligned_cols=158  Identities=25%  Similarity=0.399  Sum_probs=145.4

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      |.++..++++.+..+++.|+.+|+.|+|.+|+.+|++|+.+++..   .....+......+....+|.|+|.||.++++|
T Consensus         4 ~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME---YGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC---CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---hccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            678899999999999999999999999999999999999977543   22233344567788889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|+++|.++|.++++++++|.++..+|+|++|+.+|+++++++|+|+.+...+..+...+.++.+++++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018098          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       161 ~  161 (168)
T d1kt1a1         161 K  161 (168)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-24  Score=180.23  Aligned_cols=158  Identities=28%  Similarity=0.412  Sum_probs=145.2

Q ss_pred             CcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCCh
Q 018098          201 TPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDL  280 (361)
Q Consensus       201 ~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  280 (361)
                      |.++.+++++.+..+++.|+.+|+.|+|++|+..|++||++++..   .....+......+....+|.|+|.||+++|+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE---SSFSNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc---cccchHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            567889999999999999999999999999999999999976533   22334444567778888999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018098          281 KGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQYRKMF  360 (361)
Q Consensus       281 ~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  360 (361)
                      ++|+.+|++||.++|+++++++++|.+|..+|++++|+.+|+++++++|+|+.+...+..+..++.+..+++++.|++||
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  158 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  158 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018098          361 Q  361 (361)
Q Consensus       361 ~  361 (361)
                      +
T Consensus       159 ~  159 (170)
T d1p5qa1         159 E  159 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.1e-25  Score=181.77  Aligned_cols=168  Identities=32%  Similarity=0.535  Sum_probs=150.1

Q ss_pred             CCCCCCCCCCCCCCCCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHH
Q 018098          186 NDGDSYPDWPADLDQTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQ  265 (361)
Q Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (361)
                      ++||.|+++|++......+.+..+..+..++..|+.++..|+|.+|+..|++||.+.+.....  ........++|....
T Consensus         1 ~~gd~~~d~p~d~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~   78 (169)
T d1ihga1           1 GSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA--AEDADGAKLQPVALS   78 (169)
T ss_dssp             SSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH--SCHHHHGGGHHHHHH
T ss_pred             CCCCCCCCCchhhHHCHhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--hhhHHHHHhChhhHH
Confidence            369999999999988888899999999999999999999999999999999999876532111  112223346888999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      ++.|+|.||.++|+|++|+.+|++||+++|+++++|+++|.+|..+|++++|+.+|+++++++|+|+.+...+..+...+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 018098          346 HERREQEKKQ  355 (361)
Q Consensus       346 ~~~~~~~k~~  355 (361)
                      +..++++|+.
T Consensus       159 ~~~~~~~k~~  168 (169)
T d1ihga1         159 KAQKDKEKAA  168 (169)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhc
Confidence            9888887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.90  E-value=1e-22  Score=166.20  Aligned_cols=148  Identities=26%  Similarity=0.263  Sum_probs=130.5

Q ss_pred             CCcCchHHHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC
Q 018098          200 QTPNELSWWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD  279 (361)
Q Consensus       200 ~~~~~~~~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  279 (361)
                      .|..+.++++..|..+++.|+.+|+.|+|.+|+..|++|++++......  ..........+....+++|+|.||+++++
T Consensus         5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh--hhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            3678889999999999999999999999999999999999976543211  12222334566677899999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          280 LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       280 ~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      |++|+.+|++||+++|.++++|+++|.++..+|++++|+.+|+++++++|+|..+...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.4e-21  Score=149.06  Aligned_cols=115  Identities=27%  Similarity=0.306  Sum_probs=110.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+++.|+.+++.|+|++|+..|+++|.                  .+|.+..+|.++|.||.++|++++|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK------------------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------cCCcchhhhhcccccccccccccccchhhhhH
Confidence            466789999999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..+..++.
T Consensus        64 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          64 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.5e-20  Score=150.57  Aligned_cols=123  Identities=24%  Similarity=0.364  Sum_probs=116.1

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ..++.|+.++..|+.+++.|+|++|+.+|++++.                  ++|.+..+|.++|.|++.+|++++|+..
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~   66 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE------------------LNPSNAIYYGNRSLAYLRTECYGYALGD   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc------------------cchhhhhhhhhhHHHHHhccccchHHHH
Confidence            3456799999999999999999999999999999                  8999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      |.++|+++|+++++|+++|.++..+|++++|+.+|+++++++|++..++..+..+...+++
T Consensus        67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          67 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998888665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.1e-19  Score=153.50  Aligned_cols=104  Identities=25%  Similarity=0.366  Sum_probs=99.7

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|+.+++.|+.+++.|+|++|+..|++||.                  ++|.++.+|+|+|.||.++|+|++|+.+|++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~------------------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT------------------RNPLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            367899999999999999999999999999                  88899999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      |.++|+++++|+++|.+|..+|++++|+.+|++|++++|++.
T Consensus        65 l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999999999999998644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.2e-18  Score=133.06  Aligned_cols=118  Identities=30%  Similarity=0.376  Sum_probs=105.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .|..++++|+.++..|+|++|+.+|+++|+                  ++|.+..++.|+|.||.++|+|++|+.+|++|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~------------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKE------------------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            578899999999999999999999999999                  88888999999999999999999999999999


Q ss_pred             hhcCCCch-------hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNV-------KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      |.++|.+.       ++|+++|.++..++++++|+.+|++++.++| ++.+...+..+...+++
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l~~~~k~lke  127 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Confidence            99999874       5777888889999999999999999999987 46677777776665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=124.46  Aligned_cols=114  Identities=14%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             HHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhh
Q 018098          216 KVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL---GDLKGALLDTEFAMR  292 (361)
Q Consensus       216 ~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~~Al~~~~~al~  292 (361)
                      .++.+.+...++|++|.+.|++++.                  ++|.+..+++|+|.|+++.   +++++|+..+++++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~------------------~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA------------------AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------------HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh------------------hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            3567888999999999999999999                  8999999999999999874   456689999999999


Q ss_pred             cCCCc--hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          293 DGDDN--VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       293 ~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      .+|.+  +.+++++|.+|..+|++++|+.+|+++++++|++..++..+..+..++++
T Consensus        65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99876  45999999999999999999999999999999999999999888777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.4e-16  Score=136.04  Aligned_cols=119  Identities=16%  Similarity=0.089  Sum_probs=110.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+..+|..+++.|+|++|+..|+++|+                  ++|.++.+|+++|.+|.++|++++|+..|+++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~------------------l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALA------------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhc------------------cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHH
Confidence            688999999999999999999999999999                  88889999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHE  347 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  347 (361)
                      ++++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+......
T Consensus        98 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999998877766666555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=6.6e-16  Score=123.95  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=105.9

Q ss_pred             hcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhc----------CChHHHHHHH
Q 018098          218 FGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKL----------GDLKGALLDT  287 (361)
Q Consensus       218 ~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----------~~~~~Al~~~  287 (361)
                      .+..+-+.+.|++|+..|++|+.                  ++|.++.+++++|.++..+          +.+++|+..|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~------------------~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~   64 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK------------------SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKF   64 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh------------------hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            45667788999999999999999                  9999999999999999865          4568999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALND-----------VDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ++||+++|+++.+|+++|.+|..+|+           |++|+.+|+++++++|++..++..|+.+....+.+.+..|
T Consensus        65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988764           7999999999999999999999999999888877766544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-15  Score=126.48  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+++.|..++..|+|++|++.|.++..                     .++.+|+|+|.||..+|++++|+.+|++|
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~---------------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kA   62 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQD---------------------PHSRICFNIGCMYTILKNMTEAEKAFTRS   62 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence            466788999999999999999999986432                     12357899999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----------------GIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+++|+++.+|+++|.++..+|++++|+.+|++|+...|.+.                .++..++.+...+++..++..
T Consensus        63 l~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          63 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999877542                456677887777777766554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.60  E-value=1.5e-15  Score=123.34  Aligned_cols=116  Identities=13%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|+.++..|+|++|+..|++||++.+......      .....+....+|.|+|.||.++|+|++|+.+|+++
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~------~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhh------hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            455556669999999999999999999999765432211      11245567789999999999999999999999999


Q ss_pred             hhcCCC-----------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          291 MRDGDD-----------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       291 l~~~p~-----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      |++.|.           ...+++++|.+|..+|++++|+.+|++|+++.|...
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            987543           256899999999999999999999999999987543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=3.3e-15  Score=114.26  Aligned_cols=96  Identities=9%  Similarity=0.008  Sum_probs=90.8

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      .......|..+++.|+|++|+..|+++++                  .+|....+|.++|.++.+++++++|+.++++++
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   77 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQ------------------KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR   77 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcc------------------cccccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence            34467789999999999999999999999                  888899999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKAL  325 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al  325 (361)
                      +++|++..+++.+|.+|..+|++++|++.|++.+
T Consensus        78 ~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          78 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=130.02  Aligned_cols=122  Identities=11%  Similarity=0.059  Sum_probs=82.0

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD-LKGALLDTE  288 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~Al~~~~  288 (361)
                      +-++++..+|..+.+.+.+++|+..|++||+                  ++|.+..+|+++|.++..+++ +++|+.+++
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~------------------lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~  102 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE------------------LNAANYTVWHFRRVLLKSLQKDLHEEMNYIT  102 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------------------HCCCChHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            3467777788888888888888888888888                  566666666666666666543 666666666


Q ss_pred             HHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERR  349 (361)
Q Consensus       289 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  349 (361)
                      ++|+++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..++.+...+++.+
T Consensus       103 ~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~  163 (315)
T d2h6fa1         103 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD  163 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhH
Confidence            6666666666666666666666666666666666666666666666666666655554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-14  Score=128.42  Aligned_cols=106  Identities=18%  Similarity=0.207  Sum_probs=97.4

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+...|++++|+..|++++.                  .+|....+|.++|.++.++|++++|+..|++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALS------------------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccc------------------cccccccchhhhhhcccccccchhHHHHHHHHH
Confidence            45677889999999999999999999998                  778888999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIK  335 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~  335 (361)
                      +++|+++.+|+.+|.+|..+|++++|+..|++|++++|++..+.
T Consensus       234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            99999999999999999999999999999999999999876643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.5e-14  Score=116.49  Aligned_cols=102  Identities=12%  Similarity=0.075  Sum_probs=94.7

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+.++|..++..|+|++|++.|++|++                  ++|..+.+|+++|.||.++|+|++|+.+|++|+
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~------------------ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSIN------------------RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHH------------------HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45689999999999999999999999999                  899999999999999999999999999999999


Q ss_pred             hcCCCc----------------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 018098          292 RDGDDN----------------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND  331 (361)
Q Consensus       292 ~~~p~~----------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~  331 (361)
                      ...+.+                .++++++|.++..+|++++|++.|++|+++.|..
T Consensus        98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            876543                4678999999999999999999999999999874

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.2e-14  Score=127.63  Aligned_cols=134  Identities=13%  Similarity=0.135  Sum_probs=97.9

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc----------cCCCCcc------chhHHHHHHHHHHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE----------KEGIDEG------KSSSLRKTKSQIFTNSSACKL  275 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~----------~~~~~~~------~~~~~~~~~~~~~~nla~~~~  275 (361)
                      +..+..+|..+++.|++++|+..|++++++.+....          ......+      ......|....++..++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            455566666666666666666666666653221000          0000000      001144566678888999999


Q ss_pred             hcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          276 KLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       276 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      ++|++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.+..++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999988887654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.9e-14  Score=128.22  Aligned_cols=118  Identities=9%  Similarity=-0.010  Sum_probs=109.9

Q ss_pred             HhhhHHHHHhcchhHHhh-hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQ-DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      +..+.++..+|.++...+ ++++|+..|+++++                  .+|.+..+|.++|.++.++|++++|+.++
T Consensus        74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~------------------~~p~~~~a~~~~~~~~~~l~~~~eAl~~~  135 (315)
T d2h6fa1          74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE------------------EQPKNYQVWHHRRVLVEWLRDPSQELEFI  135 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH------------------HHHhhhhHHHHHhHHHHhhccHHHHHHHH
Confidence            345788999999999876 59999999999999                  89999999999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      .++++++|++..+|+++|.++..++++++|+.+|+++++++|.+..++..++.+...
T Consensus       136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888877544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2.3e-13  Score=118.39  Aligned_cols=118  Identities=16%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             hhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhh
Q 018098          221 EHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       221 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka  300 (361)
                      .+....+++.|+..+++++....              ..++..+.+++++|.+|..+|+|++|+.+|+++|.++|+++.+
T Consensus         8 ~~~~~~~~e~al~~~~e~l~~~~--------------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a   73 (259)
T d1xnfa_           8 PLQPTLQQEVILARMEQILASRA--------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   73 (259)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhh--------------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Confidence            33445678889999999886211              1356788899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018098          301 LFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQE  352 (361)
Q Consensus       301 ~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  352 (361)
                      |+++|.++..+|++++|+.+|+++++++|++..++..++.+...+++.+++.
T Consensus        74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999988887766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=119.31  Aligned_cols=140  Identities=18%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc-----------cCCCCcc-----chhHHHHHHHHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE-----------KEGIDEG-----KSSSLRKTKSQIFTNSSACK  274 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~nla~~~  274 (361)
                      .+..+..+|..+...|+|++|+..|++++........           ......+     ....++|....++.++|.++
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  281 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL  281 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999883211000           0000000     00012233334444444444


Q ss_pred             HhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 018098          275 LKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       275 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      ..++++.+|+..+++++...|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.+...+++.++
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            4444444444444444444444445555555555555555555555555555555555555555555554444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=6.3e-12  Score=95.54  Aligned_cols=89  Identities=20%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      .++++|.++++.|++++|+..++++++.+|+++.+|+.+|.++..++++++|+.+|+++++++|++..++..++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 018098          346 HERREQEKK  354 (361)
Q Consensus       346 ~~~~~~~k~  354 (361)
                      ++..++.+.
T Consensus        98 g~~~~A~~~  106 (112)
T d1hxia_          98 HNANAALAS  106 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            988877543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-12  Score=96.65  Aligned_cols=90  Identities=21%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++.++++|+.+++.|+|.+|+..|++|+++.+....           ..+....++.|+|.|+.++|++++|+.+++++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-----------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            3667899999999999999999999999985432100           11234678999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhc
Q 018098          291 MRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l  311 (361)
                      |+++|+++.++++++.....+
T Consensus        73 L~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          73 LELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999987765543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.7e-12  Score=115.18  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=96.0

Q ss_pred             HHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 018098          215 IKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDG  294 (361)
Q Consensus       215 ~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~  294 (361)
                      .++.|..+++.|+|++|+..|+++++                  .+|.+..+|.++|.++..+|++++|+..++++++++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   83 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQ------------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK   83 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence            46789999999999999999999999                  788889999999999999999999999999999999


Q ss_pred             CCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 018098          295 DDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGG  333 (361)
Q Consensus       295 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~  333 (361)
                      |++..+++.+|.++..+|++++|+..+++++.++|.+..
T Consensus        84 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             cccccccccccccccccccccccccchhhHHHhccchHH
Confidence            999999999999999999999999999999999997543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=7e-12  Score=104.56  Aligned_cols=89  Identities=11%  Similarity=0.028  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          265 QIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       265 ~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      ..+.+.|.++++.|+|++|+..|++||.++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+...
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 018098          345 IHERREQEK  353 (361)
Q Consensus       345 ~~~~~~~~k  353 (361)
                      +++.+++.+
T Consensus        85 l~~~~~A~~   93 (201)
T d2c2la1          85 MESYDEAIA   93 (201)
T ss_dssp             TTCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            988877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=94.52  Aligned_cols=88  Identities=20%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 018098          267 FTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIH  346 (361)
Q Consensus       267 ~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  346 (361)
                      +.+.|..+++.|+|++|+..|+++|+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 018098          347 ERREQEKK  354 (361)
Q Consensus       347 ~~~~~~k~  354 (361)
                      +.+++.+.
T Consensus        86 ~~~~A~~~   93 (117)
T d1elwa_          86 RFEEAKRT   93 (117)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            88776544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.6e-12  Score=91.85  Aligned_cols=81  Identities=21%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc-------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDN-------VKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKEL  338 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l  338 (361)
                      -++++|.++.+.|+|.+|+.++++|+++.|.+       +.+++++|.++..+|++++|+..|+++++++|+++.++.++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            46799999999999999999999999886543       67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 018098          339 AVAKKKIH  346 (361)
Q Consensus       339 ~~~~~~~~  346 (361)
                      +.++..+.
T Consensus        87 ~~~~~~l~   94 (95)
T d1tjca_          87 KYFEYIMA   94 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            88877664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=5e-11  Score=98.30  Aligned_cols=126  Identities=14%  Similarity=0.091  Sum_probs=104.9

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhcccccc----CCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEK----EGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLD  286 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~  286 (361)
                      ..+.+...|+.+...|++++|+..|.+|+.+...-...    ..+.......+.+....++.+++.++.++|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            46788999999999999999999999999976522111    11222334567888999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHH
Q 018098          287 TEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKA-------LKLEPNDGGIKKE  337 (361)
Q Consensus       287 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a-------l~l~P~~~~~~~~  337 (361)
                      |++++.++|.+..+|..++.++..+|++.+|+..|+++       +-++|. +.....
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l  146 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRAL  146 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHH
Confidence            99999999999999999999999999999999999998       446775 333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.9e-11  Score=98.67  Aligned_cols=91  Identities=13%  Similarity=0.045  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 018098          263 KSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAK  342 (361)
Q Consensus       263 ~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  342 (361)
                      .+..+...|.+|++.|+|++|+..|+++|+++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018098          343 KKIHERREQEK  353 (361)
Q Consensus       343 ~~~~~~~~~~k  353 (361)
                      ..+++.+++.+
T Consensus        89 ~~~g~~~eA~~   99 (159)
T d1a17a_          89 MALGKFRAALR   99 (159)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99888877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-11  Score=94.93  Aligned_cols=85  Identities=19%  Similarity=0.144  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      +..+-++|.+++..|+|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|+++++++|.+...+..++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34577999999999999999999999999999999999999999999999999999999999999998776666666555


Q ss_pred             HHHHH
Q 018098          344 KIHER  348 (361)
Q Consensus       344 ~~~~~  348 (361)
                      .+...
T Consensus        84 ~lg~~   88 (128)
T d1elra_          84 RIGNS   88 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.7e-10  Score=110.41  Aligned_cols=114  Identities=8%  Similarity=-0.089  Sum_probs=83.6

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+..+|..+.+.+++.+|+..|.+++.                  .++  ..++.++|.++..+++|++|+.+|.+|+
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~------------------~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS------------------YIC--QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             -----------------------CCHHHH------------------HHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhC------------------CCH--HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            45566778888888888888888888776                  444  3588999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKI  345 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  345 (361)
                      .++|++..+|+++|.++...|++.+|+.+|.+|+.++|..+.++.+|..+....
T Consensus       180 ~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998876554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=1.1e-10  Score=95.12  Aligned_cols=91  Identities=13%  Similarity=0.088  Sum_probs=83.3

Q ss_pred             hhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018098          210 NAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEF  289 (361)
Q Consensus       210 ~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~  289 (361)
                      ..+..+.++|..+++.|+|++|+..|++||+                  ++|.+..+|+++|.+|..+|+|++|+.++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~------------------~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALE------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhh------------------hhhhhhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence            3567788899999999999999999999999                  8888999999999999999999999999999


Q ss_pred             HhhcCCCchhhHhHHHHHHHhcCCHHHHH
Q 018098          290 AMRDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       290 al~~~p~~~ka~~~~a~a~~~l~~~~~A~  318 (361)
                      |++++|++..++..++.+...+..+.++.
T Consensus       137 al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         137 AQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888777666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.04  E-value=3.7e-10  Score=91.91  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=80.8

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.++|..+++.|+|.+|+..|++++.                  ++|.+..+|+++|.|+..+|+|++|+.+|.++
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~------------------l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG------------------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh------------------cccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456677899999999999999999999999                  88999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcCCHHH
Q 018098          291 MRDGDDNVKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~~~~~  316 (361)
                      +.++|++..++..++.+...++++.+
T Consensus       125 l~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         125 LEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999988877766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=9.9e-10  Score=97.26  Aligned_cols=133  Identities=17%  Similarity=0.098  Sum_probs=104.5

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTE  288 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~  288 (361)
                      .+.++.+...|+.+...++|++|++.|.+|+++....            ...+....+|.++|.||.+++++++|+.++.
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~------------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~  101 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE  101 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            3467789999999999999999999999999854321            0134567889999999999999999999999


Q ss_pred             HHhhcCCCc------hhhHhHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q 018098          289 FAMRDGDDN------VKALFRQGQAYMA-LNDVDAAVESFEKALKLEPND------GGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       289 ~al~~~p~~------~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      +++.+.+..      ..++.++|.++.. ++++++|+..|++++++.+.+      ..++..++.+...++++.++..
T Consensus       102 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence            999886655      6788888988854 699999999999999885532      2346666777766666655543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.2e-10  Score=90.75  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=81.8

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAM  291 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al  291 (361)
                      +..+.++|..+++.|+|++|+..++++|+                  ++|.++.+++++|.||..+|+|++|+.+|++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~------------------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  123 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE------------------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL  123 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh------------------ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            45677899999999999999999999999                  889999999999999999999999999999999


Q ss_pred             hcCCCchhhHhHHHHHHHhcCCHHHHH
Q 018098          292 RDGDDNVKALFRQGQAYMALNDVDAAV  318 (361)
Q Consensus       292 ~~~p~~~ka~~~~a~a~~~l~~~~~A~  318 (361)
                      +++|++..+...++.+...++++.+..
T Consensus       124 ~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         124 QLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988777666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.98  E-value=3.8e-10  Score=90.38  Aligned_cols=84  Identities=15%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+.++|..+++.|+|++|+..|+++|+                  ++|.+..+|+++|.|+..+|+|++|+.++.++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~------------------~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLK------------------IDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhcccc------------------ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            355678899999999999999999999999                  89999999999999999999999999999999


Q ss_pred             hhcCCCchhhHhHHHHHHHhcC
Q 018098          291 MRDGDDNVKALFRQGQAYMALN  312 (361)
Q Consensus       291 l~~~p~~~ka~~~~a~a~~~l~  312 (361)
                      ++++|++..+...++.+...++
T Consensus       128 l~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         128 ASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999988888766554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=3.6e-09  Score=95.22  Aligned_cols=119  Identities=9%  Similarity=0.005  Sum_probs=107.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD--LKGALLDTEF  289 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~Al~~~~~  289 (361)
                      ...+...+..+...+++.+|+..|+++++                  .+|.+..+|.++|.++..+++  +++|+..+++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~------------------~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  134 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLR------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCAR  134 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHH------------------hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHH
Confidence            34566778888899999999999999999                  888999999999999988875  8999999999


Q ss_pred             HhhcCCCchhhH-hHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          290 AMRDGDDNVKAL-FRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       290 al~~~p~~~ka~-~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      ++.++|.+..++ +.+|.++...+.+++|+..++++++++|.+..++..++.+...+++.
T Consensus       135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            999999998886 56789999999999999999999999999999999999998776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1e-08  Score=90.45  Aligned_cols=110  Identities=11%  Similarity=-0.044  Sum_probs=92.1

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEF  289 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Al~~~~~  289 (361)
                      .+..+.+.|+.+.+.|++++|+++|++++++....            ........++.++|.+|.. ++++++|+..+++
T Consensus        76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  143 (290)
T d1qqea_          76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR------------GQFRRGANFKFELGEILENDLHDYAKAIDCYEL  143 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc------------ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999955321            0122346778999988855 7999999999999


Q ss_pred             HhhcCCC------chhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 018098          290 AMRDGDD------NVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG  332 (361)
Q Consensus       290 al~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~  332 (361)
                      |+.+.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+.
T Consensus       144 A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            9977433      256789999999999999999999999999998765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.6e-09  Score=83.22  Aligned_cols=85  Identities=9%  Similarity=-0.005  Sum_probs=71.6

Q ss_pred             hhHHHHHhcchhHH---hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          211 AVDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       211 ~a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      .+..+.+.|..+++   .+++++|+..|++++..-                ..+....+|+++|.||.++|+|++|+.++
T Consensus        32 ~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----------------~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~   95 (122)
T d1nzna_          32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----------------SKEEQRDYVFYLAVGNYRLKEYEKALKYV   95 (122)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----------------CCchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            46788899999986   567788999999999711                13445679999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHhc
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMAL  311 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~l  311 (361)
                      +++|+++|++..|...++.+...+
T Consensus        96 ~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          96 RGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999998888776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=2.4e-09  Score=84.80  Aligned_cols=91  Identities=18%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             HhhhHHHHHhcchhHH----------hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcC
Q 018098          209 MNAVDSIKVFGNEHYK----------KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLG  278 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~----------~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  278 (361)
                      +..+..+..+|..++.          .+.+++|+..|++|++                  ++|.+..+|+|+|.+|..+|
T Consensus        28 P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~------------------l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          28 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL------------------IDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------------------hcchhhHHHhhHHHHHHHcc
Confidence            3457888889988874          4566899999999999                  89999999999999998876


Q ss_pred             C-----------hHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHH
Q 018098          279 D-----------LKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAA  317 (361)
Q Consensus       279 ~-----------~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A  317 (361)
                      +           |++|+.++++||+++|++..++..++.+....+.+.++
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4           79999999999999999999998888887665555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=7.4e-08  Score=86.30  Aligned_cols=104  Identities=12%  Similarity=-0.003  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCC
Q 018098          227 DYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGD----------LKGALLDTEFAMRDGDD  296 (361)
Q Consensus       227 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~Al~~~~~al~~~p~  296 (361)
                      ..++|++.|+++|.                  .+|.+..+|++++.++..++.          +.+|+..++++++.+|+
T Consensus        44 ~~~~al~~~~~~l~------------------~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk  105 (334)
T d1dcea1          44 LDESVLELTSQILG------------------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK  105 (334)
T ss_dssp             CSHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            35899999999999                  888888888888887666544          78999999999999999


Q ss_pred             chhhHhHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHH
Q 018098          297 NVKALFRQGQAYMALND--VDAAVESFEKALKLEPNDGGIKK-ELAVAKKKIHER  348 (361)
Q Consensus       297 ~~ka~~~~a~a~~~l~~--~~~A~~~~~~al~l~P~~~~~~~-~l~~~~~~~~~~  348 (361)
                      +..+|+.+|.++..+++  +++|+..++++++++|.+...+. .++.+....+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence            99999999999988875  89999999999999999887765 444554444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=4.8e-08  Score=73.82  Aligned_cols=84  Identities=13%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCch-hhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 018098          264 SQIFTNSSACKLKL---GDLKGALLDTEFAMRDGDDNV-KALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELA  339 (361)
Q Consensus       264 ~~~~~nla~~~~~l---~~~~~Al~~~~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~  339 (361)
                      ....++.|.|..+-   .+.++|+..++.+++.+|... .++|.+|.+|+.+|+|++|..+++++++++|+|..++....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            35678888888865   456799999999999999764 79999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q 018098          340 VAKKKIHE  347 (361)
Q Consensus       340 ~~~~~~~~  347 (361)
                      .+..++..
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88777754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-08  Score=97.07  Aligned_cols=112  Identities=12%  Similarity=0.021  Sum_probs=68.3

Q ss_pred             HhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhH
Q 018098          224 KKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFR  303 (361)
Q Consensus       224 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~  303 (361)
                      ..+.|+.|+..|.+++.                  +++....++.++|.++.+.+++++|+..+.+++.++|.  .++++
T Consensus        98 a~~~Y~~ai~~l~~~~~------------------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~  157 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFN------------------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVH  157 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------------------------CCHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHC------------------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHH
Confidence            45566666666666665                  67788889999999999999999999999999988864  68999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018098          304 QGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEKKQ  355 (361)
Q Consensus       304 ~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  355 (361)
                      +|.++..++++++|+.+|++|++++|++...+..++.+....++..++-...
T Consensus       158 LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y  209 (497)
T d1ya0a1         158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY  209 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999988877776655433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.5e-07  Score=83.17  Aligned_cols=127  Identities=15%  Similarity=-0.001  Sum_probs=98.2

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .++...-.|..++..|++++|+..|+++++..+..             ..+....++.++|.+|..+|++++|+..+.++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~-------------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQQT   77 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC-------------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            46666778999999999999999999999844321             23345678999999999999999999999999


Q ss_pred             hhcCCCc------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHHH
Q 018098          291 MRDGDDN------VKALFRQGQAYMALNDVDAAVESFEKALKLEPND--------GGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       291 l~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~--------~~~~~~l~~~~~~~~~~~~  350 (361)
                      +.+.+..      ..+++.++.++...+++..|...+.+++.+.+..        ..+...++.+.....+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_          78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence            9875433      5688899999999999999999999999865321        2244455555555444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.56  E-value=6.5e-08  Score=77.09  Aligned_cols=90  Identities=18%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             HHHHHHH--HHHHHhcCChHHHHHHHHHHhhcCCCc------------hhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 018098          264 SQIFTNS--SACKLKLGDLKGALLDTEFAMRDGDDN------------VKALFRQGQAYMALNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       264 ~~~~~nl--a~~~~~l~~~~~Al~~~~~al~~~p~~------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P  329 (361)
                      ..++.++  |..++..|+|++|+..|++||++.|..            +.+|.++|.+|..+|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3445554  778889999999999999999988865            35789999999999999999999999998865


Q ss_pred             CC-----------HHHHHHHHHHHHHHHHHHHHHH
Q 018098          330 ND-----------GGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       330 ~~-----------~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      ..           ..++..++.+...+.+.+++..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~  121 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  121 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHH
Confidence            31           2256677888777777665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.55  E-value=1.1e-08  Score=89.10  Aligned_cols=114  Identities=9%  Similarity=-0.060  Sum_probs=86.9

Q ss_pred             cchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCch
Q 018098          219 GNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNV  298 (361)
Q Consensus       219 G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~  298 (361)
                      +..+++.|++++|+..|+++++                  .+|.+..++.+++.+++..|++++|+..++++++++|++.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~------------------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIK------------------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH------------------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            3457789999999999999999                  8899999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEKALKL-EPNDGGIKKELAVAKKKIHERRE  350 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~P~~~~~~~~l~~~~~~~~~~~~  350 (361)
                      .++..++.++...+..+++...+.+...+ +|.+.......+.+.....+.++
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~  117 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ  117 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHH
Confidence            99888888888777777766555443333 23333333333333333333333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.3e-07  Score=83.58  Aligned_cols=106  Identities=19%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             hhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018098          211 AVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFA  290 (361)
Q Consensus       211 ~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~a  290 (361)
                      .+..+...|..+...+++++|...|.+++.....              ..+.....+.++|.++..+|++++|+..++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  277 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  277 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT--------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc--------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456677888899999999999999998873221              12334556789999999999999999999999


Q ss_pred             h------hcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 018098          291 M------RDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPN  330 (361)
Q Consensus       291 l------~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~  330 (361)
                      +      ...|....++..+|.+|..+|++++|+..|++|+++.+.
T Consensus       278 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         278 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            8      445667899999999999999999999999999998653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=9.9e-07  Score=71.82  Aligned_cols=95  Identities=14%  Similarity=0.036  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----------------------hhhHhHHHHHHHhcCCHHH
Q 018098          259 LRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDN----------------------VKALFRQGQAYMALNDVDA  316 (361)
Q Consensus       259 ~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~----------------------~ka~~~~a~a~~~l~~~~~  316 (361)
                      ++-.....+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            555667788999999999999999999999999987643                      3678999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018098          317 AVESFEKALKLEPNDGGIKKELAVAKKKIHERREQEK  353 (361)
Q Consensus       317 A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  353 (361)
                      |+.+++++++++|.+..++..+..+...+++..++.+
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999999999999999999888877766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.40  E-value=6.6e-07  Score=77.61  Aligned_cols=76  Identities=20%  Similarity=0.074  Sum_probs=69.1

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 018098          273 CKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKKIHER  348 (361)
Q Consensus       273 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  348 (361)
                      -.++.|++++|+..++++++.+|.+..++..+|.++...|++++|++.|+++++++|++..+...++.+.......
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            4567899999999999999999999999999999999999999999999999999999999988888776554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=3.6e-06  Score=74.25  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             HHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhh
Q 018098          214 SIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK-LGDLKGALLDTEFAMR  292 (361)
Q Consensus       214 ~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~Al~~~~~al~  292 (361)
                      .+...++...+.++++.|.+.|.+++.                  ..|.....|...|..... .++.+.|...+++++.
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~------------------~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~  197 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKARE------------------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK  197 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHT------------------STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH------------------hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345556666677777777777777776                  344444556666665433 4778888888888888


Q ss_pred             cCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHH
Q 018098          293 DGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDG----GIKKELAVAKKKI  345 (361)
Q Consensus       293 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~----~~~~~l~~~~~~~  345 (361)
                      ..|+++..|...+......|++++|...|++|++..|.++    .++..........
T Consensus       198 ~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         198 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            8888888888888888888888888888888888776543    3555555554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=2.7e-06  Score=63.97  Aligned_cols=79  Identities=10%  Similarity=0.048  Sum_probs=63.1

Q ss_pred             hHHHHHhcchhHH---hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHH-HHHHHHHHHHHHHhcCChHHHHHHH
Q 018098          212 VDSIKVFGNEHYK---KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKT-KSQIFTNSSACKLKLGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~Al~~~  287 (361)
                      +...++.|..+.+   ..+.++|+..++++++                  .+|. ...++++||.+|.++|+|++|+.++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~------------------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~   96 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK------------------EAESRRRECLYYLTIGCYKLGEYSMAKRYV   96 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH------------------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh------------------cCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3455666666664   3567789999998887                  4443 4579999999999999999999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHH
Q 018098          288 EFAMRDGDDNVKALFRQGQAY  308 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~  308 (361)
                      +++|+++|+|..|...+-.+-
T Consensus        97 ~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          97 DTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHHHHHHHHH
Confidence            999999999998876665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=7.3e-06  Score=72.18  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          266 IFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAY-MALNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       266 ~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~-~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      +|..++....+.++++.|+..+.++++..|.+...+...|... ...|+.+.|...|+++++.+|.+..++..+......
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            4555666666666666666666666666666666666655543 334566666666666666666666666666665555


Q ss_pred             HHHH
Q 018098          345 IHER  348 (361)
Q Consensus       345 ~~~~  348 (361)
                      .++.
T Consensus       216 ~g~~  219 (308)
T d2onda1         216 LNED  219 (308)
T ss_dssp             TCCH
T ss_pred             cCCh
Confidence            5443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.88  E-value=6.3e-05  Score=64.05  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             hHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHH
Q 018098          212 VDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDT  287 (361)
Q Consensus       212 a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~  287 (361)
                      +.++..+|..++++++|.+|+.+|++|.+                  .  .+..++.+||.+|..    ..++..|+.++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~------------------~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~   61 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD------------------L--KENSGCFNLGVLYYQGQGVEKNLKKAASFY   61 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------C--CCHHHHHHHHHHHHcCCCcchhHHHHHHhh
Confidence            56789999999999999999999999976                  2  355688999999998    67899999999


Q ss_pred             HHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 018098          288 EFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEP  329 (361)
Q Consensus       288 ~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P  329 (361)
                      ..+...+  ++.+.+.+|..+..    ..+.+.|...++++.+..+
T Consensus        62 ~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          62 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9988766  67888888887765    4688999999999988754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.65  E-value=0.0002  Score=54.50  Aligned_cols=82  Identities=18%  Similarity=0.082  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCchhh
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGALLDTEFAMRDGDDNVKA  300 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~Al~~~~~al~~~p~~~ka  300 (361)
                      ..++++|+.+|+++.+                    ..+..+++++|.+|..    ..++.+|+.+++++.+..  ++.+
T Consensus        36 ~~~~~~a~~~~~~aa~--------------------~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a   93 (133)
T d1klxa_          36 QINKQKLFQYLSKACE--------------------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDG   93 (133)
T ss_dssp             TSCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             ccCHHHHHHHHhhhhc--------------------ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchH
Confidence            3456677777776654                    2345567778877765    456788888888887754  6777


Q ss_pred             HhHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 018098          301 LFRQGQAYMA----LNDVDAAVESFEKALKLE  328 (361)
Q Consensus       301 ~~~~a~a~~~----l~~~~~A~~~~~~al~l~  328 (361)
                      .+++|.+|..    ..++++|+.+|++|.++.
T Consensus        94 ~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          94 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            8888887776    457888888888887765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.56  E-value=0.00022  Score=54.24  Aligned_cols=94  Identities=20%  Similarity=0.068  Sum_probs=75.2

Q ss_pred             hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHH
Q 018098          225 KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQ  304 (361)
Q Consensus       225 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  304 (361)
                      .+++++|+.+|+++.+                  .  .+..++.+++.  ....++++|+.+++++.+.+  ++.+++.+
T Consensus         6 ~kd~~~A~~~~~kaa~------------------~--g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~~a~~~L   61 (133)
T d1klxa_           6 KKDLKKAIQYYVKACE------------------L--NEMFGCLSLVS--NSQINKQKLFQYLSKACELN--SGNGCRFL   61 (133)
T ss_dssp             HHHHHHHHHHHHHHHH------------------T--TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH------------------C--CChhhhhhhcc--ccccCHHHHHHHHhhhhccc--chhhhhhH
Confidence            4699999999999987                  2  12334556653  44678999999999998864  88999999


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 018098          305 GQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVAKKK  344 (361)
Q Consensus       305 a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  344 (361)
                      |..|..    ..++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        62 g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          62 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999886    56899999999999886  477788888887655

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=0.00021  Score=60.71  Aligned_cols=106  Identities=25%  Similarity=0.187  Sum_probs=79.4

Q ss_pred             hHHHHHhcchhHH----hhhHHHHHHHHHHHHhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHHh----cCChHHH
Q 018098          212 VDSIKVFGNEHYK----KQDYKMALRKYRKALRYLDICWEKEGIDEGKSSSLRKTKSQIFTNSSACKLK----LGDLKGA  283 (361)
Q Consensus       212 a~~~~~~G~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A  283 (361)
                      ...+..+|..+..    ..+...+...++++.+                    ..+..+++++|.+|..    .+++++|
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--------------------~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACD--------------------LKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccc--------------------ccccccccchhhhcccCcccccchhhh
Confidence            3344555555554    3455566666666544                    3456789999999987    6799999


Q ss_pred             HHHHHHHhhcCCCchhhHhHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 018098          284 LLDTEFAMRDGDDNVKALFRQGQAYMA----LNDVDAAVESFEKALKLEPNDGGIKKELAVA  341 (361)
Q Consensus       284 l~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~  341 (361)
                      +.++.++.+.+  ++.+++++|.+|..    ..++++|+.+|++|.++.  +..+...|.++
T Consensus       202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l  259 (265)
T d1ouva_         202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQL  259 (265)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTC
T ss_pred             hhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence            99999999985  78999999999986    448999999999999886  45555555544

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.26  E-value=0.12  Score=34.37  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             HhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccc
Q 018098          209 MNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDIC  245 (361)
Q Consensus       209 ~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~  245 (361)
                      +..|-.+-..+..+.+.|+|++||+++++|+.++..+
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3457777788899999999999999999999977544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.88  E-value=0.22  Score=34.45  Aligned_cols=40  Identities=18%  Similarity=0.089  Sum_probs=34.0

Q ss_pred             HHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccc
Q 018098          208 WMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWE  247 (361)
Q Consensus       208 ~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~  247 (361)
                      .+..|..+...|..+-+.|+|++|+.+|.+|++++..+..
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~   50 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK   50 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence            4456888899999999999999999999999998765543

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.57  E-value=0.22  Score=33.01  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             HHHhhhHHHHHhcchhHHhhhHHHHHHHHHHHHhhhccccccC
Q 018098          207 WWMNAVDSIKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKE  249 (361)
Q Consensus       207 ~~~~~a~~~~~~G~~~~~~g~y~~A~~~y~~al~~~~~~~~~~  249 (361)
                      ..++.|..+...|..+=+.|+|++|+.+|.+|++++......+
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e   48 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYE   48 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            3455688888899999999999999999999999876654433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.42  E-value=1.7  Score=37.30  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCchhhHhHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 018098          264 SQIFTNSSACKLKLGDLKGALLDTEFAMRDGDDNVKALFRQGQAYMALNDVDAAVESFEKALKLEPNDGGIKKELAVAKK  343 (361)
Q Consensus       264 ~~~~~nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  343 (361)
                      ...|.....+++...+...| ..+...+.++|+..   --.-..|...|.+++.+..++.++.+++.+..+...+..+..
T Consensus        69 ~~~~k~~~~~l~~~~e~~la-~i~~~~~~~~~d~l---~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya  144 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLA-QMCGLHIVVHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH-HHTTTTTTTCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHH-HHHHHHhhcCHHHH---HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            34555566666665555443 22333334444332   335566778899999999999998888888888877777765


Q ss_pred             HHHH
Q 018098          344 KIHE  347 (361)
Q Consensus       344 ~~~~  347 (361)
                      +...
T Consensus       145 k~~~  148 (336)
T d1b89a_         145 KFKP  148 (336)
T ss_dssp             TTCH
T ss_pred             HhCh
Confidence            5443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.91  E-value=5.5  Score=26.04  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             hhHhHHHHHHHhcCCHHHHHHHHHH-------HHHhCCCCHHHHHH
Q 018098          299 KALFRQGQAYMALNDVDAAVESFEK-------ALKLEPNDGGIKKE  337 (361)
Q Consensus       299 ka~~~~a~a~~~l~~~~~A~~~~~~-------al~l~P~~~~~~~~  337 (361)
                      ..+-|+|..+...|+|++||++.++       |+++ +.++.+...
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~S   53 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLS   53 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            3445566666666666666655544       4455 445544443