Citrus Sinensis ID: 018107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MHPTGRVEREEFIGASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSSPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEccccccEEEEccHHHHHHHHccccccccHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHHcHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHcHHcccccccccccccccccccccccccccccccccHHHHHHHccccHHHccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mhptgrvereefigassssasysappqpreglhdagpppfltktydivedcntnhiiswsrgsnsfvvwdpqafsitllpkyfkhnnfSSFVRQLNtygfrkvdpdrwefanEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVgrfgldgevdrLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRrrhidqgpgeidvgdlgqgevdipfvkiepeeygdlaELGLSELDRLAMDMQARLSerqrnpddefvergeehgsknkftiDQRFWEDFLNEDVEEemlagegegdENVRLLVEQLgflssspk
Flexible Loop (DISEMBL)
mhptgrvereefigassssasysAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRkttqssasqqaLDACVEVGRFGLDGEVDRLRRDKQVLMMELVklrhqqqntrEYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMInrkrrrhidqgpgeidvgdlgqgEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARlserqrnpddefvergeehgsknkftidqRFWEDFLNEDVEEEMLagegegdenVRLLVEqlgflssspk
Low Complexity Region (SEG)
MHPTGRVEREEFIGassssasysaPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSSPK
Disordered region (IsUnstruct)
***************************************FLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNI**************LDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLR**************************************************************************VGDLGQGEVDIPFVKIEPEEYGDLAELGL*************************************FTIDQRFWEDFLNED****************RLLVEQL********
Disordered Region (DISOPRED)
***************************************FLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHL***********************************************LVKLRHQQQNTREYLQL**************MMSFLARAMQ***************************************************************************************************************WEDFLN******************RLLVEQLGFLS****
Disordered Region (DISEMBL)
*******************************LHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIR*************LDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSF************EFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSSPK
Disordered Region (DISPRO)
**************************QP*E*LHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRR********************FGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRR*************************************K**P***GDLAELGLSELDRLAMDMQAR*************************TIDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHPTGRVEREEFIGASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGExxxxxxxxxxxxxxxxxxxxxQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQxxxxxxxxxxxxxxxxxxxxxHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSSPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9LUH8	406	Heat stress transcription	yes	no	0.911	0.807	0.572	1e-108
Q6VBB2	372	Heat stress transcription	yes	no	0.902	0.873	0.550	5e-94
Q6F388	357	Heat stress transcription	no	no	0.933	0.941	0.520	2e-93
Q338B0	358	Heat stress transcription	no	no	0.888	0.893	0.527	1e-88
Q8H7Y6	359	Heat stress transcription	no	no	0.936	0.938	0.486	6e-87
O80982	345	Heat stress transcription	no	no	0.588	0.614	0.6	2e-73
P41152	351	Heat shock factor protein	N/A	no	0.852	0.874	0.424	3e-73
Q84MN7	376	Heat stress transcription	no	no	0.6	0.574	0.570	3e-72
P41151	495	Heat stress transcription	no	no	0.622	0.452	0.551	5e-70
Q9LQM7	485	Heat stress transcription	no	no	0.569	0.422	0.583	1e-68

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/360 (57%), Positives = 267/360 (74%), Gaps = 32/360 (8%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           PQP EGLH++GPPPFLTKTYD+VED  TNH++SWS+ +NSF+VWDPQAFS+TLLP++FKH
Sbjct: 48  PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSS--------AS 137
           NNFSSFVRQLNTYGFRKV+PDRWEFANEGFLRGQ+HLLKNIRRRKT+ +S        + 
Sbjct: 108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query: 138 QQALDA-CVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
           QQ+LD  C+EVGR+GLDGE+D LRRDKQVLMMELV+LR QQQ+T+ YL L+E+KL++TE 
Sbjct: 168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query: 197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEI-DVGDLGQG 255
           KQ+ MMSFLARAMQNP F+QQL +QK++RKE E+ I++KR+R IDQG   + D GD    
Sbjct: 228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDESGY 287

Query: 256 EVDI-----PFVKIEPE-EYGDLAELGLSELDRLAMDMQ-------AR---LSERQRNPD 299
             D+       + +  E  YG+++E  +SELD+LAM +Q       AR   L+  + N +
Sbjct: 288 GNDVAASSSALIGMSQEYTYGNMSEFEMSELDKLAMHIQGLGDNSSAREEVLNVEKGNDE 347

Query: 300 DEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGD-ENVRLLVEQLGFLSSS 358
           +E  ++ + +  +N     + FWED LNE    +      EGD ENV +L++QLG+L SS
Sbjct: 348 EEVEDQQQGYHKENNEIYGEGFWEDLLNEGQNFDF-----EGDQENVDVLIQQLGYLGSS 402

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  344 bits (883), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 185/336 (55%), Positives = 234/336 (69%), Gaps = 11/336 (3%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           P+P EGLHDAGPPPFLTKTYD+V+D  T+  +SWS  SNSFVVWDP AF+  LLP++FKH
Sbjct: 39  PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKH 98

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSAS-QQALDAC 144
           NNFSSFVRQLNTYGFRKVDPDRWEFANE FLRGQRHLLKNI+RRK    +AS QQ+L   
Sbjct: 99  NNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPY 158

Query: 145 VEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSF 204
           +EVG FG D E+DRL+RDKQ+LM E+VKLR +QQNT+  L+ ME +L+ TE +QQ MM+F
Sbjct: 159 LEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAF 218

Query: 205 LARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKI 264
           LAR M+NP F++QL  Q + RKE +D I++KRRR IDQGP   DVG     E + P +  
Sbjct: 219 LARVMKNPEFLKQLMSQNEMRKELQDAISKKRRRRIDQGPEVDDVGTSSSIEQESPAL-F 277

Query: 265 EPEEYGDLAELGL-SELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWE 323
           +P+E  +    G+ S+L+  AMD    +      P D  V   E+     +  ++  FWE
Sbjct: 278 DPQESVEFLIDGIPSDLENSAMDAGGLVE-----PQDFDVGASEQQQIGPQGELNDNFWE 332

Query: 324 DFLNED-VEEEMLAGEGEGDENVRLLVEQLGFLSSS 358
           + LNE  V EE      E D NV  L E++G+L+S+
Sbjct: 333 ELLNEGLVGEENDNPVVEDDMNV--LSEKMGYLNSN 366

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/342 (52%), Positives = 233/342 (68%), Gaps = 6/342 (1%)

Query: 17  SSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSI 76
           S+  +   PP+P +GL D GPPPFLTKTYD+V+D  T+ ++SWS  +NSFVVWDP  F  
Sbjct: 16  STGVANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGN 75

Query: 77  TLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSA 136
            LLP+YFKHNNFSSFVRQLNTYGFRKVDPD+WEFANEGFLRGQ+HLLK+I+RRK   SS 
Sbjct: 76  VLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSP 135

Query: 137 SQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
           SQQ+L + +EVG FG +GE+D+L+RDK +LM E+VKLR +QQNT+  LQ MEQKL+ TE 
Sbjct: 136 SQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQ 195

Query: 197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGE 256
           KQQHMM+FL+R M NP F++QL  Q + RKE E+ +++KRRR IDQGP E+D    G   
Sbjct: 196 KQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRIDQGP-ELDSMGTGSSP 254

Query: 257 VDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFT 316
             +  V  EP +  D    G+   D  +  ++A   + Q++      E G+   S  +  
Sbjct: 255 EQVSQVMFEPHDPVDSLFNGVPS-DLESSSVEANGGKAQQDVASSSSEHGKIKPSNGELN 313

Query: 317 IDQRFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSS 358
            D  FWED L+E   +E        D N  LL +++G+L+SS
Sbjct: 314 ED--FWEDLLHEGGLDEDTRNPAIDDMN--LLSQKMGYLNSS 351

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 184/349 (52%), Positives = 243/349 (69%), Gaps = 29/349 (8%)

Query: 24  APPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYF 83
           A P+P EGLH+ GPPPFLTKTYD+VED  T+ ++SWSR  NSFVVWDP  F+  LLP+ F
Sbjct: 27  AAPRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLF 86

Query: 84  KHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSS--ASQQAL 141
           KHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLK I+RRK   ++  + QQ+L
Sbjct: 87  KHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSL 146

Query: 142 DACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHM 201
            +C+EVG FG + E+DRL+RDK +L+ E+VKLR +QQ T+++++ ME +LR  E KQ  M
Sbjct: 147 TSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQM 206

Query: 202 MSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGE-VDIP 260
           M FLARAM+NP F QQLAQQK++RKE ED I++KRRR ID  P   D G+  Q E +D P
Sbjct: 207 MGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRRRPIDNVPF-YDPGETSQTEQLDSP 265

Query: 261 FVKIEPEEYGDLAELGLSELDRLAMDMQ----ARLSERQRNPDDEFVERGEEHGSKNKFT 316
           ++  +     +L+E G+ EL+ LA+++Q     ++ E ++N  +   E G++        
Sbjct: 266 YL-FDSGVLNELSEPGIPELENLAVNIQDLGKGKVDEERQNQTNGQAELGDD-------- 316

Query: 317 IDQRFWEDFLNEDV----EEEMLAGEGEGDENVRLLVEQLGFLSS-SPK 360
               FW + L ED     E+  L G+ +G   +  L +QLG+LSS SPK
Sbjct: 317 ----FWAELLVEDFTGKEEQSELDGKIDG---IDELAQQLGYLSSTSPK 358

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H7Y6|HFA2D_ORYSJ Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2

 Score =  321 bits (822), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 227/345 (65%), Gaps = 8/345 (2%)

Query: 18  SSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSIT 77
           SS      P+P EGLH+ GPPPFLTKT+D+V D  T+ ++SW R  +SFVVWDP  F+  
Sbjct: 16  SSPEEGEAPRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAV 75

Query: 78  LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNI-RRRKTTQSSA 136
            LP++FKHNNFSSFVRQLNTYGFRK+DPDRWEFAN+GFLRGQRHLLK I RRR  +    
Sbjct: 76  FLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPG 135

Query: 137 SQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
           SQQAL  C+EVG+FGLD E+DRL+RDK +L+ E+VKLRH+QQ+T+  ++ ME++L+  E 
Sbjct: 136 SQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQ 195

Query: 197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGE 256
           KQ  MM FLARAMQNP F  QL  Q+D+ K  ED  ++KR R ID  P  ++ G++ QG+
Sbjct: 196 KQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTRSIDIVPF-LNPGEVSQGD 254

Query: 257 VDIPFVKIEPEEYGDLA-ELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKF 315
                +  +P  + +L  E   SEL+ LA+++Q     +Q   D         + + N+ 
Sbjct: 255 QLESTLLFDPRPFAELNDEPAKSELENLALNIQGLGKGKQ---DVNRTRNQPRNQASNET 311

Query: 316 TIDQRFWEDFLNEDVEEE--MLAGEGEGDENVRLLVEQLGFLSSS 358
            +   FWE+ LNE   ++  +   E      V  L ++LG+LS+S
Sbjct: 312 ELTDDFWEELLNEGARDDAGIPGMERRRPRYVDALAQKLGYLSNS 356

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O80982|HSFA2_ARATH Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 168/215 (78%), Gaps = 3/215 (1%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           P+P EGL++ GPPPFLTKTY++VED  T+ ++SWS G NSFVVWD   FS TLLP+YFKH
Sbjct: 31  PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKH 90

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTT--QSSASQQALDA 143
           +NFSSF+RQLNTYGFRK+DPDRWEFANEGFL GQ+HLLKNI+RR+    Q+   Q +  +
Sbjct: 91  SNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMS 150

Query: 144 CVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMS 203
           CVEVG++G DGEV+RL+RD  VL+ E+V+LR QQ +++  +  MEQ+L  TE +QQ MM+
Sbjct: 151 CVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMT 210

Query: 204 FLARAMQNPSFVQQLA-QQKDRRKEFEDMINRKRR 237
           FLA+A+ NP+FVQQ A   K+++  F   + RKRR
Sbjct: 211 FLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKRR 245

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs).

Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/353 (42%), Positives = 205/353 (58%), Gaps = 46/353 (13%)

Query: 28  PREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNN 87
           P EGLHD GPPPFL+KTY++VED +T+ +ISWS   NSF+VWD   FS TLLP++FKH+N
Sbjct: 20  PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSN 79

Query: 88  FSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACVEV 147
           FSSF+RQLNTYGFRKVDPDRWEFANEGFL GQ+HLLK I+RR+    S +QQ   AC+E+
Sbjct: 80  FSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEI 139

Query: 148 GRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLAR 207
           G +G++ E++RL+RDK VLM E+VKLR QQQ+TR  +  M +K+   E KQ  MMSFLA+
Sbjct: 140 GYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAK 199

Query: 208 AMQNPSFVQQLAQQKDRRKEFEDM-INRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEP 266
              NP+F+QQ   ++  RK+ + + + +KRR  +       D                +P
Sbjct: 200 IFSNPTFLQQYLDKQVHRKDKQRIEVGQKRRLTMTPSVTGSD----------------QP 243

Query: 267 EEYGDLAELGLSELDRLAMDMQARL---SERQRNPDDEFVERGEEHGSKNKFTIDQRFWE 323
             Y    +   +EL  + M   A +   S     PD      G +        +    WE
Sbjct: 244 MNYSSSLQESEAELASIEMLFSAAMDNESSSNVRPDSVVTANGTDMEP-----VADDIWE 298

Query: 324 DFLNEDV---------------------EEEMLAGEGEGDENVRLLVEQLGFL 355
           + L+ED+                      E+++    E  E ++ LV+QLGFL
Sbjct: 299 ELLSEDLISGDRAAEEVVVVEQPEFDVEVEDLVVKTPEWGEELQDLVDQLGFL 351

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q84MN7|HFA2A_ORYSJ Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1

 Score =  272 bits (695), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/233 (57%), Positives = 165/233 (70%), Gaps = 17/233 (7%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           P+P EGL +AGPPPFL KTY++V+D  T+ +ISW    NSFVVWD  AF+  LLP+YFKH
Sbjct: 40  PRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKH 99

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSAS-------- 137
           +NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRG++ LLK I+RR+   SS          
Sbjct: 100 SNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSS 159

Query: 138 ----QQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR 193
               QQ   AC+EVG+FG DG V+RL+RDK VL+ E+VKLR +QQ TR  +Q ME+++  
Sbjct: 160 SQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISA 219

Query: 194 TEMKQQHMMSFLARAMQNPSFVQQL-----AQQKDRRKEFEDMINRKRRRHID 241
            E KQQ M  FLARAM+NP F+Q L      Q   R +  ED +++KRRR I+
Sbjct: 220 AEQKQQQMTVFLARAMKNPGFLQMLVDRQAGQHGARNRVLEDALSKKRRRPIE 272

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 135/245 (55%), Positives = 169/245 (68%), Gaps = 21/245 (8%)

Query: 14  GASSSSASYSAPP----QPREGLH-DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVV 68
           G ++   + +APP     P   L+ ++ PPPFL+KTYD+VED  T+ I+SWS  +NSF+V
Sbjct: 22  GGTNIGEAVTAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIV 81

Query: 69  WDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRR 128
           WDP  FS  LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+HLLK I R
Sbjct: 82  WDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISR 141

Query: 129 RKTTQSSASQQ----------------ALDACVEVGRFGLDGEVDRLRRDKQVLMMELVK 172
           RK+ Q   S                  AL +CVEVG+FGL+ EV++L+RDK VLM ELVK
Sbjct: 142 RKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVK 201

Query: 173 LRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMI 232
           LR QQQ T   LQ++ + L+  E +QQ +MSFLA+A+QNP+F+ Q  Q++          
Sbjct: 202 LRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEA 261

Query: 233 NRKRR 237
           N+KRR
Sbjct: 262 NKKRR 266

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/216 (58%), Positives = 155/216 (71%), Gaps = 11/216 (5%)

Query: 14  GASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQA 73
           G  S     S  PQP   L    PPPFL+KTYD+V+D NT+ I+SWS  +NSF+VW P  
Sbjct: 12  GGDSMETKPSPQPQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPE 71

Query: 74  FSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRK--- 130
           F+  LLPK FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+HLL++I RRK   
Sbjct: 72  FARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAH 131

Query: 131 --------TTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTRE 182
                   +  S+    ++ ACVEVG+FGL+ EV+RL+RDK VLM ELV+LR QQQ+T  
Sbjct: 132 GQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDN 191

Query: 183 YLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQL 218
            LQ M Q+L+  E +QQ +MSFLA+A+Q+P F+ Q 
Sbjct: 192 QLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQF 227

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
255552051	359	Heat shock factor protein HSF30, putativ	0.969	0.972	0.677	1e-130
224099843	348	predicted protein [Populus trichocarpa]	0.922	0.954	0.663	1e-123
356574431	366	PREDICTED: heat stress transcription fac	0.972	0.956	0.601	1e-109
224082688	331	predicted protein [Populus trichocarpa]	0.9	0.978	0.609	1e-107
449524643	363	PREDICTED: heat stress transcription fac	0.894	0.887	0.605	1e-107
449433295	363	PREDICTED: heat stress transcription fac	0.894	0.887	0.605	1e-107
356535960	366	PREDICTED: heat stress transcription fac	0.963	0.948	0.565	1e-107
297830994	414	AT-HSFA6B [Arabidopsis lyrata subsp. lyr	0.911	0.792	0.560	1e-106
15228865	406	heat stress transcription factor A-6b [A	0.911	0.807	0.572	1e-106
449458520	374	PREDICTED: heat stress transcription fac	0.947	0.911	0.553	1e-104

>gi|255552051|ref|XP_002517070.1| Heat shock factor protein HSF30, putative [Ricinus communis] gi|223543705|gb|EEF45233.1| Heat shock factor protein HSF30, putative [Ricinus communis]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/366 (67%), Positives = 285/366 (77%), Gaps = 17/366 (4%)

Query: 1   MHPTGRVEREEFIGASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWS 60
           M+  GRV+ E     SSS +S  A PQP  GL+DAGPPPFLTKTYDIVED +TNHI+SWS
Sbjct: 1   MNRVGRVKEEYAGAGSSSYSSGLAVPQPVVGLNDAGPPPFLTKTYDIVEDISTNHIVSWS 60

Query: 61  RGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQR 120
           RG+NSFVVWDPQAFS++LLP+YFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+
Sbjct: 61  RGNNSFVVWDPQAFSLSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQK 120

Query: 121 HLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNT 180
           HLLKNIRRRKT Q   SQQ+LD CVE+GRFGLDGE+DRLRRDKQ+LMMELVKLR QQQNT
Sbjct: 121 HLLKNIRRRKTPQPQNSQQSLDPCVELGRFGLDGEIDRLRRDKQILMMELVKLRQQQQNT 180

Query: 181 REYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHI 240
           +  LQLME +L+RTE KQQ MMSFLARAMQNP+FVQQL QQKD+RK  ED+I +KRRR I
Sbjct: 181 KASLQLMEHRLKRTESKQQQMMSFLARAMQNPNFVQQLVQQKDKRKILEDVITKKRRRPI 240

Query: 241 DQGPG------EIDVGDLGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSER 294
            Q P       EID G LG      PFVKIEPEE+G+L+E  +S+LD LAM MQ  +S  
Sbjct: 241 GQVPSNDQVDEEIDQGRLGVE----PFVKIEPEEFGNLSEFEVSDLDTLAMTMQ-EVSGS 295

Query: 295 QRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEM--LAGEGEGDENVRLLVEQL 352
           Q N  +E +E+G EH  K K  ID+ FWED  N+D  EEM  L G+    E+V +LVEQL
Sbjct: 296 QHNLVEECIEKGYEHAGKGK-DIDEEFWEDLWNDDTGEEMGILGGQA---EDVDVLVEQL 351

Query: 353 GFLSSS 358
           G+L  S
Sbjct: 352 GYLGYS 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099843|ref|XP_002311642.1| predicted protein [Populus trichocarpa] gi|222851462|gb|EEE89009.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/348 (66%), Positives = 276/348 (79%), Gaps = 16/348 (4%)

Query: 21  SYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP 80
           + +A PQP EGL D+ PPPFLTKTYDI+ED +TNHI+SWSRG+NSF++WDPQAFS +LLP
Sbjct: 2   ASTAIPQPMEGLRDSVPPPFLTKTYDIIEDASTNHIVSWSRGNNSFIIWDPQAFSTSLLP 61

Query: 81  KYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQA 140
           +YFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRG++HLLK+IRRRK  Q+  SQ  
Sbjct: 62  RYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKHLLKSIRRRKAPQTLTSQ-- 119

Query: 141 LDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQH 200
             ACVEVG FGLDGEV+RLRRDKQVLM+ELVKLR QQQ T+  +QL+E+KL+RTE KQQ 
Sbjct: 120 --ACVEVGTFGLDGEVNRLRRDKQVLMVELVKLRQQQQTTKACIQLIERKLKRTENKQQQ 177

Query: 201 MMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIP 260
           MMSFLARAMQNP+FVQQLAQQK+ RKE E+ I++KRRR IDQG    +V + G GE    
Sbjct: 178 MMSFLARAMQNPNFVQQLAQQKEMRKELEEAISKKRRRPIDQGRSNFEVAEFGHGEGVGT 237

Query: 261 FVKIEPEEYGDLAEL-GLSELD-----RLAMDMQARLSERQR-NPDDEFVERGEEHGSKN 313
           FVKIE +E+GDL+E   LSE D       AM+MQ  LSE Q  N  +E +E+GEEHG+K 
Sbjct: 238 FVKIEHQEFGDLSEFDDLSEFDVPEFHNPAMNMQG-LSENQLINLVEERIEKGEEHGNKG 296

Query: 314 KFTIDQRFWEDFLNEDVEEE---MLAGEGEGDENVRLLVEQLGFLSSS 358
              ID+ FWED LNED+ +E   +L  EGE +E+V +LVEQLG+L SS
Sbjct: 297 N-EIDEGFWEDLLNEDIIDEEIAVLGSEGEDEEDVSVLVEQLGYLGSS 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574431|ref|XP_003555351.1| PREDICTED: heat stress transcription factor A-6b-like [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/376 (60%), Positives = 276/376 (73%), Gaps = 26/376 (6%)

Query: 1   MHPTGRVEREEFIGASSSSASYSAP------PQPREGLHDAGPPPFLTKTYDIVEDCNTN 54
           M P G+V +EEF+G SSS      P      PQP EGLH+ GPPPFLTKTYDIV+D +TN
Sbjct: 1   MDPHGQV-KEEFLGESSSFCGGYDPQPILVVPQPIEGLHETGPPPFLTKTYDIVDDPSTN 59

Query: 55  HIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEG 114
           HI+SWS G+NSFVVWDPQAFSITLLPK+FKHNNFSSFVRQLNTYGFRKVDPD+WEFANE 
Sbjct: 60  HIVSWSTGNNSFVVWDPQAFSITLLPKFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEL 119

Query: 115 FLRGQRHLLKNIRRRKTT-QSSASQQ--ALDACVEVGRFGLDGEVDRLRRDKQVLMMELV 171
           FLRGQ+ LLKNIRRRK   QS A QQ   ++ CVEVG FGLDGEVDRLRRD+QVLM+ELV
Sbjct: 120 FLRGQKILLKNIRRRKANHQSHAMQQQGVVEPCVEVGPFGLDGEVDRLRRDRQVLMVELV 179

Query: 172 KLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDR-RKEFED 230
           KLR QQQ+T+ +LQ ME +L++TE KQQ MM+FLARAMQNP+FVQQLAQQK+  RKE E+
Sbjct: 180 KLRQQQQSTKSHLQEMEGRLKKTEQKQQQMMNFLARAMQNPNFVQQLAQQKEYWRKELEE 239

Query: 231 MINRKRRRHIDQGPGE-IDVGD----LGQGEVDIPFVKIEPEEY-GDLAELGLSELDRLA 284
             ++KRRR IDQGP   ++VG     LG  E    FVK+EP+EY   + E  + +L  L 
Sbjct: 240 AFSKKRRRPIDQGPSNVVEVGGDDELLGCAEECSNFVKLEPQEYTAKVLEFEVPDLP-LV 298

Query: 285 MDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDEN 344
           +++     E Q+   +E   R E   S++K  ID+ FW+D LNE +E+  + G     E+
Sbjct: 299 LNLDEENIESQKRILEEDNIRLE---SRDK-DIDEVFWQDLLNEGIEDHGVLGV----ED 350

Query: 345 VRLLVEQLGFLSSSPK 360
           V +L  QLG+L+SSPK
Sbjct: 351 VDVLANQLGYLASSPK 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082688|ref|XP_002306796.1| predicted protein [Populus trichocarpa] gi|222856245|gb|EEE93792.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/341 (60%), Positives = 250/341 (73%), Gaps = 17/341 (4%)

Query: 25  PPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFK 84
           PPQPREGLHD GPPPFLTKT+D+V+D  TNHI+SW+RG +SFV WDP +FS  LLP+YFK
Sbjct: 3   PPQPREGLHDTGPPPFLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSFSTNLLPRYFK 62

Query: 85  HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKT-TQSSASQQALDA 143
           HNNFSSFVRQLNTYGFRK+DPDRWEFANEGFL GQ+HLL+NI+RRK  +Q    QQA DA
Sbjct: 63  HNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLSGQKHLLRNIKRRKAPSQPLTQQQAPDA 122

Query: 144 CVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMS 203
           CVEVGRFGLDGE+DRLRRDKQVLMMELVKLR QQQN R Y+Q M+Q+L+  E KQQ MM 
Sbjct: 123 CVEVGRFGLDGEIDRLRRDKQVLMMELVKLRQQQQNARSYIQAMDQRLQAIEQKQQQMMQ 182

Query: 204 FLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPF-- 261
           FLARAMQNP+F+QQL QQK++RKE E+ + +KRRR IDQG      G  G     I    
Sbjct: 183 FLARAMQNPAFLQQLVQQKEKRKELEEAMTKKRRRPIDQGSSRGGGGRRGGESSHIGGSA 242

Query: 262 --VKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQ 319
             +K EP E GDL E  +SEL+ LA++MQ     R R   ++ VE  E   SK++  +D+
Sbjct: 243 NPIKAEPLESGDL-EFEVSELEALALEMQG--YGRARREQEDGVEELETPESKDR-ELDE 298

Query: 320 RFWEDFLNEDVEEEMLAGEGEGDENVRLLVEQLGFLSSSPK 360
            FWE+ LNE          G  +++V  L E+LG+L SSPK
Sbjct: 299 GFWEELLNESA--------GGDEDDVNTLAERLGYLGSSPK 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524643|ref|XP_004169331.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/335 (60%), Positives = 246/335 (73%), Gaps = 13/335 (3%)

Query: 1   MHPTGRVEREEFIGASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWS 60
           M+  GR  +EE   +SSS  + +A PQP EGLH+AGPPPFLTKTY+I+ED  TNHI+SWS
Sbjct: 1   MNRPGRRVKEEIPASSSSGTTTAASPQPMEGLHEAGPPPFLTKTYEIIEDIGTNHIVSWS 60

Query: 61  RGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQR 120
           RG+NSFVVWDPQ+FS+TLLPKYFKH+NFSSFVRQLNTYGFRKVDPD+WEFA+EGFLRGQ+
Sbjct: 61  RGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDKWEFAHEGFLRGQK 120

Query: 121 HLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNT 180
           HLLK IRRRK +Q +AS QA D+CVEVGRFGLDGEVDRL+RDKQVLM E+VKLR QQQNT
Sbjct: 121 HLLKLIRRRKASQPNASHQAPDSCVEVGRFGLDGEVDRLQRDKQVLMAEVVKLRQQQQNT 180

Query: 181 REYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHI 240
           + YLQ ME++L++TE KQQ MM+FLARA+QNP F+QQL  QKD+ KE E+ INRKRRRHI
Sbjct: 181 KTYLQTMERRLKKTETKQQLMMNFLARAIQNPDFIQQLIHQKDKHKELEETINRKRRRHI 240

Query: 241 DQG-PGEIDVGDLGQGEVDI-PFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNP 298
           DQG P   D  +       + PF+  + E   DL  +G  E     M            P
Sbjct: 241 DQGQPDFEDEEEKEDDYDHLPPFINDDIEMDVDLLPIGDEE---HLMKYHV--------P 289

Query: 299 DDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEE 333
             E ++   E    N   +++ FWE+ LNE  EE+
Sbjct: 290 KKEIMDENCERNVDNIEDLNEGFWENLLNEANEED 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433295|ref|XP_004134433.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/335 (60%), Positives = 247/335 (73%), Gaps = 13/335 (3%)

Query: 1   MHPTGRVEREEFIGASSSSASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWS 60
           M+  GR  +EE   + SS  + +A PQP EGLH+AGPPPFLTKTY+I+ED  TNHI+SWS
Sbjct: 1   MNRPGRRVKEEIPASGSSGTTTAASPQPMEGLHEAGPPPFLTKTYEIIEDIGTNHIVSWS 60

Query: 61  RGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQR 120
           RG+NSFVVWDPQ+FS+TLLPKYFKH+NFSSFVRQLNTYGFRKVDPD+WEFA+EGFLRGQ+
Sbjct: 61  RGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDKWEFAHEGFLRGQK 120

Query: 121 HLLKNIRRRKTTQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNT 180
           HLLK IRRRK +Q +AS QA D+CVEVGRFGLDGEVDRL+RDKQVLM E+VKLR QQQNT
Sbjct: 121 HLLKLIRRRKASQPNASHQAPDSCVEVGRFGLDGEVDRLQRDKQVLMAEVVKLRQQQQNT 180

Query: 181 REYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHI 240
           + YLQ ME++L++TE KQQ MM+FLARA+QNP F+QQL  QKD+ KE E+ INRKRRRHI
Sbjct: 181 KTYLQTMERRLKKTETKQQLMMNFLARAIQNPDFIQQLIHQKDKHKELEETINRKRRRHI 240

Query: 241 DQG-PGEIDVGDLGQGEVDI-PFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNP 298
           DQG P   D  +       + PFV  + E   DL  +G  E       M+  +      P
Sbjct: 241 DQGQPDFEDEEEKEDDYDHLPPFVNDDIEMDVDLLPIGDEE-----HLMKYHV------P 289

Query: 299 DDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEE 333
             E ++   E    N   +++ FWE+ LNE  EE+
Sbjct: 290 KKEIMDENCERNVDNIEDLNEGFWENLLNEANEED 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535960|ref|XP_003536509.1| PREDICTED: heat stress transcription factor A-6b-like [Glycine max]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/375 (56%), Positives = 272/375 (72%), Gaps = 28/375 (7%)

Query: 1   MHPTGRVEREEFIGASSSSASYSAP------PQPREGLHDAGPPPFLTKTYDIVEDCNTN 54
           M+P G V +EEF+G SSS      P      PQP EGLH+ GPPPFLTKTYDIV+D +TN
Sbjct: 1   MNPHGLV-KEEFLGESSSFCGGYDPQPIMVVPQPIEGLHETGPPPFLTKTYDIVDDPSTN 59

Query: 55  HIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEG 114
           HI+SWS G+NSFVVWDPQAFS+TLLPK+FKHNNFSSFVRQLNTYGF+KVDPD+WEFANE 
Sbjct: 60  HIVSWSTGNNSFVVWDPQAFSVTLLPKFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEM 119

Query: 115 FLRGQRHLLKNIRRRKTTQSSASQQAL-----DACVEVGRFGLDGEVDRLRRDKQVLMME 169
           FLRGQR LLKNIRRRK     + Q A+     +  VEVG+F LDGE+DRLRRD+QVLM+E
Sbjct: 120 FLRGQRILLKNIRRRKANHHQSHQHAMQQGVEEPFVEVGQFELDGEIDRLRRDRQVLMVE 179

Query: 170 LVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFE 229
           LVKLR QQQ+T+ +LQ ME +++ TE KQ+ MM+FLARAMQNP+FVQQLAQQK+ RKE E
Sbjct: 180 LVKLRQQQQSTKSHLQEMEGRIKMTEQKQKQMMNFLARAMQNPNFVQQLAQQKEWRKELE 239

Query: 230 DMINRKRRRHIDQGPGEIDVGD-----LGQGEVDIPFVKIEPEEY---GDLAELGLSELD 281
           ++ + K+RR IDQGP  ++V D     LG  E    FVK+EP+EY     + E  + +LD
Sbjct: 240 EVFSNKKRRPIDQGPNVVEVADDDDELLGCAEECSDFVKLEPQEYYSDDKVLEFEVPDLD 299

Query: 282 RLAMDMQARLSERQRNPDDEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEG 341
            LA+++     E Q+   +E  E  +   S+ ++ ID+ FW+D LNE +E++ + G    
Sbjct: 300 -LALNLDEENIESQKRIMEE--EHVQLENSRERY-IDEVFWQDLLNEGIEDQGVLGV--- 352

Query: 342 DENVRLLVEQLGFLS 356
            E+V +L +QLG+L+
Sbjct: 353 -EDVDVLAKQLGYLA 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830994|ref|XP_002883379.1| AT-HSFA6B [Arabidopsis lyrata subsp. lyrata] gi|297329219|gb|EFH59638.1| AT-HSFA6B [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/366 (56%), Positives = 260/366 (71%), Gaps = 38/366 (10%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           PQP EGLH++GPPPFLTKTYD+VED  TNH++SWS+ +NSF+VWDPQAFSITLLP++FKH
Sbjct: 50  PQPIEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSITLLPRFFKH 109

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQAL---- 141
           NNFSSFVRQLNTYGFRKV+PDRWEFANEGFLRGQ+HLLKNIRRRKT+ +S   Q      
Sbjct: 110 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQLQQPQSSE 169

Query: 142 -----DACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
                + C+EVGR+GLDGE+D LRRDKQVLMMELV+LR QQQ+T+ YL L+E+KL++TE 
Sbjct: 170 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 229

Query: 197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGP-GEIDVGDL--G 253
           KQQ MM FLARAMQNP F+QQL +QK++RKE E+ I++KR+R IDQG    ++VGD    
Sbjct: 230 KQQQMMGFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVVNVGDYDDA 289

Query: 254 QGEVD----------IPFVKIEPEEYGDLAELGLSELDRLAMDMQARLSERQRNPDDEFV 303
            G V+            F+ +  E YG+++E  +S+LD+LAM +Q          +   V
Sbjct: 290 SGYVNDAAASTSASASAFLDMSQETYGNMSEFEMSDLDKLAMHIQGLGDHSSTREEVLNV 349

Query: 304 ERGEE----------HGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGD-ENVRLLVEQL 352
           E+G +          +  +NK    + FWED LNE    +      EGD ENV +L+EQL
Sbjct: 350 EKGNDEEEEEDQQQGYQKENKEIYGEGFWEDLLNEGQNFDF-----EGDQENVDVLIEQL 404

Query: 353 GFLSSS 358
           G+L SS
Sbjct: 405 GYLGSS 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228865|ref|NP_188922.1| heat stress transcription factor A-6b [Arabidopsis thaliana] gi|75311595|sp|Q9LUH8.1|HFA6B_ARATH RecName: Full=Heat stress transcription factor A-6b; Short=AtHsfA6b; AltName: Full=AtHsf-07 gi|9279701|dbj|BAB01258.1| heat shock transcription factor-like protein [Arabidopsis thaliana] gi|15028343|gb|AAK76648.1| putative heat shock protein [Arabidopsis thaliana] gi|19310749|gb|AAL85105.1| putative heat shock protein [Arabidopsis thaliana] gi|332643160|gb|AEE76681.1| heat stress transcription factor A-6b [Arabidopsis thaliana]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/360 (57%), Positives = 267/360 (74%), Gaps = 32/360 (8%)

Query: 26  PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
           PQP EGLH++GPPPFLTKTYD+VED  TNH++SWS+ +NSF+VWDPQAFS+TLLP++FKH
Sbjct: 48  PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query: 86  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSS--------AS 137
           NNFSSFVRQLNTYGFRKV+PDRWEFANEGFLRGQ+HLLKNIRRRKT+ +S        + 
Sbjct: 108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query: 138 QQALDA-CVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
           QQ+LD  C+EVGR+GLDGE+D LRRDKQVLMMELV+LR QQQ+T+ YL L+E+KL++TE 
Sbjct: 168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query: 197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEI-DVGDLGQG 255
           KQ+ MMSFLARAMQNP F+QQL +QK++RKE E+ I++KR+R IDQG   + D GD    
Sbjct: 228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDESGY 287

Query: 256 EVDI-----PFVKIEPE-EYGDLAELGLSELDRLAMDMQ-------AR---LSERQRNPD 299
             D+       + +  E  YG+++E  +SELD+LAM +Q       AR   L+  + N +
Sbjct: 288 GNDVAASSSALIGMSQEYTYGNMSEFEMSELDKLAMHIQGLGDNSSAREEVLNVEKGNDE 347

Query: 300 DEFVERGEEHGSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGD-ENVRLLVEQLGFLSSS 358
           +E  ++ + +  +N     + FWED LNE    +      EGD ENV +L++QLG+L SS
Sbjct: 348 EEVEDQQQGYHKENNEIYGEGFWEDLLNEGQNFDF-----EGDQENVDVLIQQLGYLGSS 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458520|ref|XP_004146995.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus] gi|449491566|ref|XP_004158938.1| PREDICTED: heat stress transcription factor A-6b-like [Cucumis sativus]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/372 (55%), Positives = 264/372 (70%), Gaps = 31/372 (8%)

Query: 9   REEFIGASSSS-----ASYSAPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGS 63
           +EEF G+SSS      ++   PP P EGLHDAGPPPFLTKT++IV+D NT+H+ISWS   
Sbjct: 12  KEEFPGSSSSDVDGERSAVLTPPVPMEGLHDAGPPPFLTKTFEIVDDFNTDHVISWSFSG 71

Query: 64  NSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLL 123
            SF+VWDP  FS  LLP++FKHNNFSSFVRQLNTYGFRK+DPDRWEFANEGF+RGQ+HLL
Sbjct: 72  TSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFIRGQKHLL 131

Query: 124 KNIRRRKTT-----QSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQ 178
           KNI+RR+TT     Q+  SQ A  ACVEVG+FG+D E+DRL+RDKQVLMMELVKLR +QQ
Sbjct: 132 KNIKRRRTTSYHHHQTLQSQGASGACVEVGQFGVDAEMDRLKRDKQVLMMELVKLRQEQQ 191

Query: 179 NTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRR 238
           NTR YLQ MEQ+LR TE+KQ+ MM+FLARAM+NPSF+QQL QQK++RKE E+ I +KRRR
Sbjct: 192 NTRAYLQAMEQRLRGTEIKQKQMMNFLARAMKNPSFIQQLIQQKEKRKELEEAITKKRRR 251

Query: 239 HIDQGPGEIDVGD------LGQGEVDIPFVKIEPEEYGDLAELGLSELDRLAMDMQARLS 292
            I+Q  G+   G       LG+G   I    +E +EYG     G++EL+ LA++MQ    
Sbjct: 252 PIEQA-GQHKCGGGSGRRFLGEGSNTIKIEPLENDEYG----FGITELEALALEMQGLGK 306

Query: 293 ERQRNPDDEFVERGEEH-----GSKNKFTIDQRFWEDFLNEDVEEEMLAGEGEGDENVRL 347
            R  + ++E  E  E++            +D+ FWE+  +E +EE         DE+V +
Sbjct: 307 TRYEDGEEEEEEDEEDNDNLLPSEDEDKVLDEGFWEELFSERLEEAR-----NEDEHVNV 361

Query: 348 LVEQLGFLSSSP 359
           L ++LG+L SSP
Sbjct: 362 LADRLGYLGSSP 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.780	0.692	0.617	3.3e-95
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.702	0.733	0.530	7.6e-72
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.558	0.738	0.6	4.7e-70
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.708	0.530	0.512	2.3e-66
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.675	0.519	0.509	9.8e-66
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.558	0.712	0.581	5.4e-65
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.591	0.439	0.575	3.7e-64
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.6	0.436	0.587	1.6e-63
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.511	0.652	0.551	2e-56
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.516	0.497	0.529	2e-51

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 186/301 (61%), Positives = 237/301 (78%)

Query:    26 PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
             PQP EGLH++GPPPFLTKTYD+VED  TNH++SWS+ +NSF+VWDPQAFS+TLLP++FKH
Sbjct:    48 PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query:    86 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSS--------AS 137
             NNFSSFVRQLNTYGFRKV+PDRWEFANEGFLRGQ+HLLKNIRRRKT+ +S        + 
Sbjct:   108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query:   138 QQALDA-CVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEM 196
             QQ+LD  C+EVGR+GLDGE+D LRRDKQVLMMELV+LR QQQ+T+ YL L+E+KL++TE 
Sbjct:   168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query:   197 KQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEI-DVGD-LGQ 254
             KQ+ MMSFLARAMQNP F+QQL +QK++RKE E+ I++KR+R IDQG   + D GD  G 
Sbjct:   228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDESGY 287

Query:   255 GEVDIP-----FVKIEPE-EYGDLAELGLSELDRLAMDMQARLSERQRNPDDEF-VERGE 307
             G  D+       + +  E  YG+++E  +SELD+LAM +Q  L +     ++   VE+G 
Sbjct:   288 GN-DVAASSSALIGMSQEYTYGNMSEFEMSELDKLAMHIQG-LGDNSSAREEVLNVEKGN 345

Query:   308 E 308
             +
Sbjct:   346 D 346

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
 Identities = 139/262 (53%), Positives = 181/262 (69%)

Query:     6 RVEREE----FIGXXXXXXX--XXXPPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISW 59
             +VE EE    F G             P+P EGL++ GPPPFLTKTY++VED  T+ ++SW
Sbjct:     5 KVEMEEETVTFTGSVAASSSVGSSSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSW 64

Query:    60 SRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ 119
             S G NSFVVWD   FS TLLP+YFKH+NFSSF+RQLNTYGFRK+DPDRWEFANEGFL GQ
Sbjct:    65 SNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQ 124

Query:   120 RHLLKNIRRRKTTQ-SSASQQALD-ACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQ 177
             +HLLKNI+RR+     + +QQ    +CVEVG++G DGEV+RL+RD  VL+ E+V+LR QQ
Sbjct:   125 KHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQ 184

Query:   178 QNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLA-QQKDRRKEFEDMINRKR 236
              +++  +  MEQ+L  TE +QQ MM+FLA+A+ NP+FVQQ A   K+++  F   + RKR
Sbjct:   185 HSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKR 244

Query:   237 RRHIDQGPGEIDVGDLGQGEVD 258
             R       G ++   L   E D
Sbjct:   245 RLTSTPSLGTMEENLLHDQEFD 266

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
 Identities = 129/215 (60%), Positives = 163/215 (75%)

Query:    25 PPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFK 84
             PPQP EGLH+  PPPFLTKT+++V+D NT+HI+SW+RG  SFVVWD  +FS  LLP++FK
Sbjct:    15 PPQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFK 74

Query:    85 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDAC 144
             H+NFSSF+RQLNTYGFRK++ +RWEFANE FL GQR LLKNI+RR     S+S    DAC
Sbjct:    75 HSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPSH-DAC 133

Query:   145 VEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSF 204
              E            LRR+KQVLMME+V LR QQQ T+ Y++ MEQ++  TE KQ+ MMSF
Sbjct:   134 NE------------LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSF 181

Query:   205 LARAMQNPSFVQQLAQQKDRR-KEFEDMINRKRRR 238
             LARAMQ+PSF+ QL +Q+D++ KE ED  + KR+R
Sbjct:   182 LARAMQSPSFLHQLLKQRDKKIKELEDNESAKRKR 216

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 139/271 (51%), Positives = 180/271 (66%)

Query:    38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
             PPFL+KTYD+V+D  TN ++SWS G+NSFVVW    FS  LLPKYFKHNNFSSFVRQLNT
Sbjct:    26 PPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNT 85

Query:    98 YGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQ-------ALDACVEVGRF 150
             YGFRKVDPDRWEFANEGFLRG++ LLK+I RRK +    +QQ       ++ ACVEVG+F
Sbjct:    86 YGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKF 145

Query:   151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQ 210
             G++ EV+RL+RDK VLM ELV+LR QQQ T   LQ + QK++  E +QQ MMSFLA+A+Q
Sbjct:   146 GIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQ 205

Query:   211 NPSFVQQLAQQK--DRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEE 268
             +P F+ QL QQ   D  ++     N+KRR  +D+     D  ++  G ++   V+ +P  
Sbjct:   206 SPGFLNQLVQQNNNDGNRQIPGS-NKKRRLPVDEQENRGD--NVANG-LNRQIVRYQPS- 260

Query:   269 YGDLAELGLSELDRLAMDMQARLSERQRNPD 299
               + A+  L +   L      R      NPD
Sbjct:   261 INEAAQNMLRQF--LNTSTSPRYESVSNNPD 289

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 129/253 (50%), Positives = 173/253 (68%)

Query:    38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
             PPFL+KTYD+V+D  T+ ++SWS G+NSFVVW+   F+   LPKYFKHNNFSSFVRQLNT
Sbjct:    22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNT 81

Query:    98 YGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQ------ALDACVEVGRFG 151
             YGFRKVDPDRWEFANEGFLRGQ+ +LK+I RRK  Q    QQ      ++ ACVEVG+FG
Sbjct:    82 YGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFG 141

Query:   152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQN 211
             L+ EV+RL+RDK VLM ELV+LR QQQ T  +LQ + QK+   E +QQ MMSFLA+A+Q+
Sbjct:   142 LEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQS 201

Query:   212 PSFVQQLAQQKDRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGD 271
             P F+ Q +QQ +   +     N+KRR  ++    +++ G  G   +    V+ +     D
Sbjct:   202 PGFLNQFSQQSNEANQHISESNKKRRLPVED---QMNSGSHGVNGLSRQIVRYQ-SSMND 257

Query:   272 LAELGLSELDRLA 284
                  L ++ +++
Sbjct:   258 ATNTMLQQIQQMS 270

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 118/203 (58%), Positives = 152/203 (74%)

Query:    25 PPQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFK 84
             PP P EGL +AGP PFLTKT+++V D NTNHI+SW+RG  SFVVWDP +FS T+LP YFK
Sbjct:    14 PPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFK 73

Query:    85 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDAC 144
             HNNFSSFVRQLNTYGFRK++ +RWEF NEGFL GQR LLK+I+RR ++ S  S     + 
Sbjct:    74 HNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQ 133

Query:   145 VEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSF 204
              E    G+  E+ +LR ++ VLMME+  LR ++Q  R Y+Q MEQ++   E KQ+HMMSF
Sbjct:   134 PEAHDPGV--ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSF 191

Query:   205 LARAMQNPSFVQQLAQQKDRRKE 227
             L RA++NPS +QQ+ +QK  R+E
Sbjct:   192 LRRAVENPSLLQQIFEQKRDREE 214

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 130/226 (57%), Positives = 165/226 (73%)

Query:    26 PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
             PQP   L    PPPFL+KTYD+V+D NT+ I+SWS  +NSF+VW P  F+  LLPK FKH
Sbjct:    24 PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKH 83

Query:    86 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRK-----------TTQS 134
             NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+HLL++I RRK           +  S
Sbjct:    84 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHS 143

Query:   135 SASQQALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRT 194
             +    ++ ACVEVG+FGL+ EV+RL+RDK VLM ELV+LR QQQ+T   LQ M Q+L+  
Sbjct:   144 NGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGM 203

Query:   195 EMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMIN--RKRRR 238
             E +QQ +MSFLA+A+Q+P F+ Q  QQ++++ E    I+   K+RR
Sbjct:   204 ENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRR 249

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 137/233 (58%), Positives = 168/233 (72%)

Query:    26 PQPREGLH-DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFK 84
             P P   L+ ++ PPPFL+KTYD+VED  T+ I+SWS  +NSF+VWDP  FS  LLPKYFK
Sbjct:    38 PHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFK 97

Query:    85 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQ---SSAS---- 137
             HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQ+HLLK I RRK+ Q   SS+S    
Sbjct:    98 HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQS 157

Query:   138 QQ---------ALDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLME 188
             QQ         AL +CVEVG+FGL+ EV++L+RDK VLM ELVKLR QQQ T   LQ++ 
Sbjct:   158 QQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLV 217

Query:   189 QKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHID 241
             + L+  E +QQ +MSFLA+A+QNP+F+ Q  Q++          N+KRR   D
Sbjct:   218 KHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLRED 270

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 108/196 (55%), Positives = 149/196 (76%)

Query:    26 PQPREGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKH 85
             P P EGL +  P  FLTKTY+IVED +TN+I+SWSR +NSF+VW+P+ F++  LP+ FKH
Sbjct:     6 PIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKH 65

Query:    86 NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSSASQQALDACV 145
             NNFSSFVRQLNTYGF+K+D +RWEFANE FL+G+RHLLKNI+RRKT+  + +Q       
Sbjct:    66 NNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQS------ 119

Query:   146 EVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFL 205
                   L+GE+  LRRD+  L +ELV+LR +Q++ + YL LME+KL+ TE+KQ+ MM+FL
Sbjct:   120 ------LEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKLKVTEVKQEMMMNFL 173

Query:   206 ARAMQNPSFVQQLAQQ 221
              + ++ PSF+Q L ++
Sbjct:   174 LKKIKKPSFLQSLRKR 189

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 100/189 (52%), Positives = 130/189 (68%)

Query:    39 PFLTKTYDIVEDCNTNHIISWSRGS-NSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
             PFL K YD+V+D  T+ IISWS  + NSFV+ D   FS+ LLPKYFKH+NFSSF+RQLN 
Sbjct:    19 PFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNI 78

Query:    98 YGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKTTQSS--ASQQALDACVEVGRFGLDGE 155
             YGFRKVD DRWEFAN+GF+RGQ+ LLKN+ RRK  QSS  +  ++        + GL  E
Sbjct:    79 YGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQEKSGLWKE 138

Query:   156 VDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFV 215
             VD L+ DKQVL  EL+K+R  Q+ T   +  +E +++  E  QQ M+SFL   M+NPS +
Sbjct:   139 VDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKNPSLL 198

Query:   216 QQLAQQKDR 224
              QL Q K++
Sbjct:   199 VQLLQPKEK 207

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6VBB2	HFA2B_ORYSJ	No assigned EC number	0.5505	0.9027	0.8736	yes	no
Q9LUH8	HFA6B_ARATH	No assigned EC number	0.5722	0.9111	0.8078	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	1e-53
smart00415	105	smart00415, HSF, heat shock factor	2e-50
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	2e-28

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  171 bits (436), Expect = 1e-53
 Identities = 59/96 (61%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 39  PFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTY 98
           PFL K Y+I+ED + + IISWS   NSF++WDP+ F+  +LPKYFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 99  GFRKVDPDR--WEFANEGFLRGQRHLLKNIRRRKTT 132
           GF KV  DR  WEFA+  F RGQ+ LL  I+RRK+ 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKSE 96

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  163 bits (415), Expect = 2e-50
 Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 11/105 (10%)

Query: 36  GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQL 95
            PPPFLTK Y +VED +T+ IISWS    SFV+WDP+ F+  LLP+YFKHNNFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 96  NTYGFRKVDP-----------DRWEFANEGFLRGQRHLLKNIRRR 129
           N YGFRKVDP           D+WEFAN  F+RGQ  LL+NI+R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 47/104 (45%), Positives = 62/104 (59%), Gaps = 10/104 (9%)

Query: 37  PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLN 96
           P  F+ K Y I+E+     +I WS    SFV+ DP+ F+  +LP+YFKH NF+SFVRQLN
Sbjct: 10  PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69

Query: 97  TYGFRKV----------DPDRWEFANEGFLRGQRHLLKNIRRRK 130
            YGF KV          + + WEF N+ F  G   LLK I+R+K
Sbjct: 70  KYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKK 113

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.97
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	97.38
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.62
smart00413	87	ETS erythroblast transformation specific domain. v	93.15
KOG3806	177	consensus Predicted transcription factor [Transcri	87.92
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.58
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.55
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.24
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	80.34

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=7e-47  Score=365.71  Aligned_cols=187  Identities=50%  Similarity=0.877  Sum_probs=172.1

Q ss_pred             CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC--CCCceEecC
Q 018107           36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD--PDRWEFANE  113 (360)
Q Consensus        36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~  113 (360)
                      .+++|+.|||.||+||+++++|+|+++|+||||||+..|++.+||+||||+||+|||||||+||||||+  +++|||+|+
T Consensus        11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~   90 (304)
T KOG0627|consen   11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP   90 (304)
T ss_pred             CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence            789999999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             CccccchhcccccccccCCCCccc----hhc------ccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107          114 GFLRGQRHLLKNIRRRKTTQSSAS----QQA------LDACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQQQNTREY  183 (360)
Q Consensus       114 ~F~Rg~~~LL~~IkRr~~~~~~~~----qq~------~~~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~  183 (360)
                      +|+||+++||++|+||++.+....    ...      ...++...+..+..++.+|+++++.||.|+++||++++.++.+
T Consensus        91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~  170 (304)
T KOG0627|consen   91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT  170 (304)
T ss_pred             hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999999999999854321    111      1123445566899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhH
Q 018107          184 LQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQK  222 (360)
Q Consensus       184 l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~  222 (360)
                      ++.+.+++..++.+|++|+.|+++++++|.|+.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999998764

>smart00415 HSF heat shock factor

Probab=100.00  E-value=4.6e-35  Score=244.46  Aligned_cols=94  Identities=69%  Similarity=1.258  Sum_probs=90.7

Q ss_pred             CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCC----------
Q 018107           36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDP----------  105 (360)
Q Consensus        36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~----------  105 (360)
                      ++|+|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3799999999999999999999999999999999999999999999999999999999999999999865          


Q ss_pred             -CCceEecCCccccchhcccccccc
Q 018107          106 -DRWEFANEGFLRGQRHLLKNIRRR  129 (360)
Q Consensus       106 -d~~eF~h~~F~Rg~~~LL~~IkRr  129 (360)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             679999999999999999999996

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=4e-35  Score=243.12  Aligned_cols=93  Identities=55%  Similarity=1.015  Sum_probs=81.5

Q ss_pred             chHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCCC---------Cce
Q 018107           39 PFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPD---------RWE  109 (360)
Q Consensus        39 ~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---------~~e  109 (360)
                      .||.|||+||+||+++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            49999999999999999999999999999999999999999999999999999999999999999643         399


Q ss_pred             EecCCccccchhcccccccccC
Q 018107          110 FANEGFLRGQRHLLKNIRRRKT  131 (360)
Q Consensus       110 F~h~~F~Rg~~~LL~~IkRr~~  131 (360)
                      |+|++|+||++++|..|+|+++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999975

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.97  E-value=6.7e-33  Score=266.87  Aligned_cols=142  Identities=38%  Similarity=0.698  Sum_probs=114.4

Q ss_pred             CCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC-C---------
Q 018107           36 GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD-P---------  105 (360)
Q Consensus        36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-~---------  105 (360)
                      .++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+||||||. .         
T Consensus         9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~   88 (282)
T COG5169           9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE   88 (282)
T ss_pred             chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence            357899999999999999999999999999999999999999999999999999999999999999996 1         


Q ss_pred             CCceEecCCccccchhcccccccccCCCCcc--chhccc-------ccccccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107          106 DRWEFANEGFLRGQRHLLKNIRRRKTTQSSA--SQQALD-------ACVEVGRFGLDGEVDRLRRDKQVLMMELVKLRHQ  176 (360)
Q Consensus       106 d~~eF~h~~F~Rg~~~LL~~IkRr~~~~~~~--~qq~~~-------~~~e~g~~~L~~ei~~LKrd~~~L~~Ev~kLRQq  176 (360)
                      +.|+|.|++|++|..++|++|+|++.+....  ...+..       .+.-.....+..++.+|...++.++..+..|+.-
T Consensus        89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~  168 (282)
T COG5169          89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEY  168 (282)
T ss_pred             hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccch
Confidence            2499999999999999999999977764321  100000       0111112245667788888888888888777654


Q ss_pred             H
Q 018107          177 Q  177 (360)
Q Consensus       177 q  177 (360)
                      +
T Consensus       169 ~  169 (282)
T COG5169         169 N  169 (282)
T ss_pred             h
Confidence            3

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=97.38  E-value=0.00084  Score=58.15  Aligned_cols=79  Identities=16%  Similarity=0.329  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCChHHHHHHHhHHhhHHHHHhhhccccCCCCCC
Q 018107          164 QVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQNPSFVQQLAQQKDRRKEFEDMINRKRRRHIDQG  243 (360)
Q Consensus       164 ~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~qnp~Fl~qLvqq~~~~k~l~~~~~kKRr~~i~~~  243 (360)
                      ...+.||..+++.++.+...+++|.+++...++.+++|..+-|+++++   |...+.+-+.+++|.+++.++++..+-.+
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~iip~   78 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQIIPS   78 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT----------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCcCCC
Confidence            356789999999999999999999999999999999999999999997   78888888778999999988777666555


Q ss_pred             CC
Q 018107          244 PG  245 (360)
Q Consensus       244 ~~  245 (360)
                      +.
T Consensus        79 ~~   80 (121)
T PF03310_consen   79 PE   80 (121)
T ss_dssp             --
T ss_pred             CC
Confidence            54

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.62  E-value=0.0055  Score=50.05  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=49.5

Q ss_pred             HHHHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----cccCCCCceE
Q 018107           42 TKTYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWEF  110 (360)
Q Consensus        42 ~KL~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF  110 (360)
                      .=|.++|.|+++.++|+|+. .+.-|.|.||+++++.--- +.-..-+|.++-|-|..|.=    .||...+..|
T Consensus         6 ~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y   80 (85)
T PF00178_consen    6 QFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY   80 (85)
T ss_dssp             HHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred             HHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence            33678899999999999999 9999999999999864311 22234578999999887642    3444444444

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=93.15  E-value=0.08  Score=43.66  Aligned_cols=56  Identities=23%  Similarity=0.369  Sum_probs=42.6

Q ss_pred             HHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107           44 TYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG   99 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG   99 (360)
                      |.++|.||++.++|+|.. ++.-|.+.|+++.++.--. +-=..-||..+-|-|..|-
T Consensus         8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            678999999999999998 6788999999988764322 1112346888888887763

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=87.92  E-value=0.84  Score=42.23  Aligned_cols=62  Identities=19%  Similarity=0.351  Sum_probs=44.1

Q ss_pred             CCchHHHHHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhccc
Q 018107           37 PPPFLTKTYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTY   98 (360)
Q Consensus        37 ~p~Fl~KL~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~Y   98 (360)
                      .-.-..=|.++|.|+++.++|+|.. +|--|.+.||++-++.---+ -=.+=||.-.-|-|..|
T Consensus        68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            3344445667889999999999998 68789999999988754322 11234666666776655

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.58  E-value=12  Score=35.64  Aligned_cols=60  Identities=20%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 018107          151 GLDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRRTEMKQQHMMSFLARAMQ  210 (360)
Q Consensus       151 ~L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~~E~kQqQmm~FLak~~q  210 (360)
                      .+..++..|+++.+.|...+.++.......+..+..+++++..++...++|..+|.+.+.
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777777777888888888888888888888887776664

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.55  E-value=5.6  Score=32.35  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 018107          152 LDGEVDRLRRDKQVLMMELVK-------LRHQQQNTREYLQLMEQKLRR  193 (360)
Q Consensus       152 L~~ei~~LKrd~~~L~~Ev~k-------LRQqqq~~~~~l~~me~RL~~  193 (360)
                      |.-||+.||.+|..|..|+..       |+++.+..+.+.+.-++||++
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888888888888888776       444444444455555555544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.24  E-value=9.7  Score=30.26  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107          152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKLRR  193 (360)
Q Consensus       152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL~~  193 (360)
                      |..+++.||.++..|..|...|+++.+..+....+-..||++
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666665555555555555444444444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=80.34  E-value=7.4  Score=28.26  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018107          152 LDGEVDRLRRDKQVLMMELVKLRHQQQNTREYLQLMEQKL  191 (360)
Q Consensus       152 L~~ei~~LKrd~~~L~~Ev~kLRQqqq~~~~~l~~me~RL  191 (360)
                      ++.+.+.||+....|..+..+|.++.+..++++..+..++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555555555555555555555555555555555544

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	360
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		1e-22
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		5e-16
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		3e-13
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		7e-13
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		9e-13
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		2e-12
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-12
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		6e-12

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 14/114 (12%)
Query: 35  AGP---PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSF 91
           AGP   P FLTK + +V D +T+ +I WS   NSF V+D   F+  +LPKYFKHNN +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 92  VRQLNTYGFRK---------VDPDR--WEFANEGFLRGQRHLLKNIRRRKTTQS 134
           VRQLN YGFRK         V P+R   EF +  FLRGQ  LL+NI+R+ T+ S
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)
Query: 35  AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQ 94
           +G P FL K + +V+D +TN +I W++   SFV+ +   F+  LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61
Query: 95  LNTYGFRKV----------DPDRWEFANEGFLRGQRHLLKNIRRR 129
           LN YGF K+          D D  EF++  F R    LL  I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 29  REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNF 88
           R  +     P F+ K + +V D +    I WS    S VV + + F   +LPKYFKH+NF
Sbjct: 4   RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNF 63
Query: 89  SSFVRQLNTYGFRKV-----------DPDRWEFANE 113
           +SFVRQLN YG+ KV           +  RWEF NE
Sbjct: 64  ASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 38  PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
           P F+ K + +V D +    I WS    S VV + + F   +LPKYFKH+NF+SFVRQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 98  YGFRKV-----------DPDRWEFANE 113
           YG+ KV           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 38  PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
           P F+ K + +V D +    I WS    S VV + + F   +LPKYFKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 98  YGFRKV-----------DPDRWEFANE 113
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38  PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
           P F+ K +  V D +    I WS    S VV + + F   +LPKYFKH+NF+SFVRQLN 
Sbjct: 3   PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 98  YGFRKV-----------DPDRWEFANE 113
           YG+ KV           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38  PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
           P F+ K + +V D +    I WS    S VV + + F   +L KYFKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 98  YGFRKV-----------DPDRWEFANE 113
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 38  PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNT 97
           P F+ K + +V D +    I WS    S VV + + F   +L KYFKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 98  YGFRKV-----------DPDRWEFANE 113
           YG+ KV           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
2ldu_A	125	Heat shock factor protein 1; structural genomics,	1e-54
1hks_A	106	Heat-shock transcription factor; transcription reg	2e-54
3hts_B	102	Heat shock transcription factor; transcription reg	2e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  174 bits (444), Expect = 1e-54
 Identities = 58/121 (47%), Positives = 73/121 (60%), Gaps = 14/121 (11%)

Query: 28  PREGLHDAGP---PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFK 84
                H AGP   P FLTK + +V D +T+ +I WS   NSF V+D   F+  +LPKYFK
Sbjct: 5   HHHHSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFK 64

Query: 85  HNNFSSFVRQLNTYGFRKV-----------DPDRWEFANEGFLRGQRHLLKNIRRRKTTQ 133
           HNN +SFVRQLN YGFRKV           + D  EF +  FLRGQ  LL+NI+R+ T+ 
Sbjct: 65  HNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

Query: 134 S 134
           S
Sbjct: 125 S 125

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  173 bits (440), Expect = 2e-54
 Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 35  AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQ 94
           +G P FL K + +V+D +TN +I W++   SFV+ +   F+  LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 95  LNTYGFRKV----------DPDRWEFANEGFLRGQRHLLKNIRRR 129
           LN YGF K+          D D  EF++  F R    LL  I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  147 bits (373), Expect = 2e-44
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 36  GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQL 95
             P F+ K + +V D +    I WS    S VV + + F   +LPKYFKH+NF+SFVRQL
Sbjct: 11  ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 70

Query: 96  NTYGFRKV-----------DPDRWEFANEGF 115
           N YG+ KV           +  RWEF NE  
Sbjct: 71  NMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 64/390 (16%), Positives = 107/390 (27%), Gaps = 110/390 (28%)

Query: 46  DIVEDCNTNHIISWSRG--SNS---FVVWDPQAFS------ITLLPKYFKHNNFSSFVR- 93
             V++ +   +    +   S      ++    A S       TLL K  +      FV  
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEE 85

Query: 94  --QLNTYGF-------RKVDP-----------DRWEFANEGFL-----RGQ-----RHLL 123
             ++N Y F        +  P           DR    N+ F      R Q     R  L
Sbjct: 86  VLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 124 KNIRRR------------KT--TQSSASQQALDACVEVGRFGLDGEVDRLRRDKQVLMME 169
             +R              KT           +   ++   F L+  +      + VL M 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEM- 201

Query: 170 LVKLRHQ-----------QQNTREYLQLMEQKLRRTEMKQQHMMSFLA-RAMQNPSFVQQ 217
           L KL +Q             N +  +  ++ +LRR    + +    L    +QN      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 218 LAQQ-K----DRRKEFEDMINRKRRRHIDQGPGEIDVGDLGQGEVDIPFVKIEPEEYGDL 272
                K     R K+  D ++     HI        +  L   EV    +K       DL
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMT-LTPDEVKSLLLKYLDCRPQDL 318

Query: 273 AE-------LGLSELDRLAMDMQARLSE-RQRNPD------DEFVERGEEHGSKN---KF 315
                      LS +     D  A     +  N D      +  +   E    +    + 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 316 TI---D--------QRFWEDFLNEDVEEEM 334
           ++               W D +  DV   +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	89.23
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	89.1
1awc_A	110	Protein (GA binding protein alpha); complex (trans	88.74
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	88.73
4avp_A	106	ETS translocation variant 1; transcription, transc	88.26
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	87.51
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	86.51
2dao_A	118	Transcription factor ETV6; ETS domain, structural	80.81
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	80.05

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=3e-40  Score=275.56  Aligned_cols=95  Identities=43%  Similarity=0.825  Sum_probs=91.5

Q ss_pred             CCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC----------
Q 018107           35 AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD----------  104 (360)
Q Consensus        35 ~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----------  104 (360)
                      +++|+||.|||+||+||+++++|+|+++|++|+|+|+.+|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCCceEecCCccccchhcccccccc
Q 018107          105 PDRWEFANEGFLRGQRHLLKNIRRR  129 (360)
Q Consensus       105 ~d~~eF~h~~F~Rg~~~LL~~IkRr  129 (360)
                      ++.|+|+|++|+||+++||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            5789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=277.70  Aligned_cols=99  Identities=54%  Similarity=0.888  Sum_probs=94.3

Q ss_pred             CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC---------
Q 018107           34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD---------  104 (360)
Q Consensus        34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~---------  104 (360)
                      ...+|+||.|||+||+||++++||+|+++|++|+|+|+.+|+++|||+||||+||+||+||||+|||+||.         
T Consensus        14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~   93 (125)
T 2ldu_A           14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVK   93 (125)
T ss_dssp             SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSS
T ss_pred             CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999983         


Q ss_pred             --CCCceEecCCccccchhcccccccccCC
Q 018107          105 --PDRWEFANEGFLRGQRHLLKNIRRRKTT  132 (360)
Q Consensus       105 --~d~~eF~h~~F~Rg~~~LL~~IkRr~~~  132 (360)
                        ++.|+|+|++|+||+++||.+|+||++.
T Consensus        94 ~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           94 PERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             CSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             CCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence              4689999999999999999999999875

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=1.7e-33  Score=233.85  Aligned_cols=81  Identities=47%  Similarity=0.869  Sum_probs=77.1

Q ss_pred             CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC---------
Q 018107           34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD---------  104 (360)
Q Consensus        34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~---------  104 (360)
                      ...+|+||.|||.||+||++++||+|+++|++|||+|+..|+++|||+||||+||+||+||||+|||||+.         
T Consensus         9 ~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~   88 (102)
T 3hts_B            9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLS   88 (102)
T ss_dssp             -CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------
T ss_pred             CCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999996         


Q ss_pred             --CCCceEecCC
Q 018107          105 --PDRWEFANEG  114 (360)
Q Consensus       105 --~d~~eF~h~~  114 (360)
                        +++|||+|++
T Consensus        89 ~~~~~wEF~n~~  100 (102)
T 3hts_B           89 NNDSRWEFENER  100 (102)
T ss_dssp             CCSCCEEEEECC
T ss_pred             CCcCCeEecCCC
Confidence              7899999986

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=89.23  E-value=0.049  Score=47.58  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=60.7

Q ss_pred             CCCCCCCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCcc----cc
Q 018107           29 REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGFR----KV  103 (360)
Q Consensus        29 ~e~~~~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGFr----Kv  103 (360)
                      +.+....++.....=|.++|.|++..++|+|...+--|.+.|+++.++..-.+ -=..-||...-|-|..|-=+    ||
T Consensus        31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv  110 (146)
T 1gvj_A           31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT  110 (146)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred             ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence            33333556777777888999999999999999998899999999888754321 11345788888988887433    55


Q ss_pred             CCCCceEec
Q 018107          104 DPDRWEFAN  112 (360)
Q Consensus       104 ~~d~~eF~h  112 (360)
                      ...+..|..
T Consensus       111 ~GkrlvY~F  119 (146)
T 1gvj_A          111 AGKRYVYRF  119 (146)
T ss_dssp             TTSSSEEEE
T ss_pred             CCCeEEEEe
Confidence            555656543

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=89.10  E-value=0.094  Score=42.56  Aligned_cols=74  Identities=15%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             CchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC---c-cccCCCCceEe
Q 018107           38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG---F-RKVDPDRWEFA  111 (360)
Q Consensus        38 p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG---F-rKv~~d~~eF~  111 (360)
                      .....=|.++|.||++.++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-   . +||...+..|.
T Consensus         5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            3444557889999999999999988779999999988875433 1114557888999998874   2 35555565554

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=88.74  E-value=0.19  Score=41.98  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=49.0

Q ss_pred             HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCc----cccCCCCceEe
Q 018107           44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA  111 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~  111 (360)
                      |.++|.||++.++|+|...+.-|.+.||+..++.--.+ -=..-||...-|-|..|.=    +||...+..|.
T Consensus         7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~   79 (110)
T 1awc_A            7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence            57889999999999999988899999998888754332 1133468888888888743    23444445553

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=88.73  E-value=0.22  Score=40.73  Aligned_cols=63  Identities=17%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107           37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG   99 (360)
Q Consensus        37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG   99 (360)
                      ......=|.++|+|+++.++|+|...+--|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            33444556778899999999999988889999999888874332 1113457888888887774

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=88.26  E-value=0.2  Score=41.54  Aligned_cols=75  Identities=20%  Similarity=0.381  Sum_probs=54.7

Q ss_pred             CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhccc---Cc-cccCCCCceEe
Q 018107           37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTY---GF-RKVDPDRWEFA  111 (360)
Q Consensus        37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~  111 (360)
                      ......=|.++|+|+++.++|+|...+..|.+.|++..++.--. +-=..-||..+-|-|..|   |. +||...+..|.
T Consensus        11 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk   90 (106)
T 4avp_A           11 SLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK   90 (106)
T ss_dssp             CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred             cEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence            34555557788999999999999998889999999888864322 111355799999998887   33 46665665554

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=87.51  E-value=0.21  Score=44.66  Aligned_cols=78  Identities=19%  Similarity=0.333  Sum_probs=57.2

Q ss_pred             CCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccC-ccCCCChhhHHhhhcccCcc----ccCCCCc
Q 018107           34 DAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPK-YFKHNNFSSFVRQLNTYGFR----KVDPDRW  108 (360)
Q Consensus        34 ~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YGFr----Kv~~d~~  108 (360)
                      ..++.....=|.++|.|+...++|+|...+--|.+.|+++.++..-.+ -=..-||...-|-|..|-=+    ||...+.
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  140 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  140 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence            445666667788899999999999999998899999999888754331 11344688888988887543    4554555


Q ss_pred             eEe
Q 018107          109 EFA  111 (360)
Q Consensus       109 eF~  111 (360)
                      .|.
T Consensus       141 vY~  143 (171)
T 2nny_A          141 VYR  143 (171)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=86.51  E-value=0.41  Score=39.37  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----cccCCCCceEe
Q 018107           37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKVDPDRWEFA  111 (360)
Q Consensus        37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~  111 (360)
                      ......=|.++|+|+++.++|+|...+.-|.+.||++.++.--. +-=..-||.-+-|-|..|-=    +||...+..|.
T Consensus         7 ~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk   86 (102)
T 2ypr_A            7 QIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR   86 (102)
T ss_dssp             SCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred             cEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            33444556788999999999999988889999999888864322 11135678889998888732    45555555553

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.81  E-value=1.2  Score=37.53  Aligned_cols=76  Identities=22%  Similarity=0.369  Sum_probs=54.4

Q ss_pred             CCCchHHHHHHhccCCCCCCeEEEcCC-CCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhccc---Cc-cccCCCCce
Q 018107           36 GPPPFLTKTYDIVEDCNTNHIISWSRG-SNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTY---GF-RKVDPDRWE  109 (360)
Q Consensus        36 ~~p~Fl~KL~~mv~dp~~~~iIsWs~~-G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y---GF-rKv~~d~~e  109 (360)
                      +....-.=|.++|.||.+.++|+|... +.-|.+.||+..++..-. +-=..-||...-|-|..|   |. +||...+..
T Consensus         7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v   86 (118)
T 2dao_A            7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL   86 (118)
T ss_dssp             CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred             cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence            345555667889999999999999874 458999999888875433 212345789999999888   33 456555655


Q ss_pred             Ee
Q 018107          110 FA  111 (360)
Q Consensus       110 F~  111 (360)
                      |.
T Consensus        87 Y~   88 (118)
T 2dao_A           87 FR   88 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=80.05  E-value=0.84  Score=37.58  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             hHHHHHHhccCCC-CCCeEEEcCC-CCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC---c-cccCCCCceEe
Q 018107           40 FLTKTYDIVEDCN-TNHIISWSRG-SNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG---F-RKVDPDRWEFA  111 (360)
Q Consensus        40 Fl~KL~~mv~dp~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG---F-rKv~~d~~eF~  111 (360)
                      ...=|.++|.||+ ..++|+|... .--|.+.||+..++.--. +-=..-||..+-|-|..|-   . +||...+..|.
T Consensus         7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            3344677889987 5689999975 458999999888864322 1114568999999988873   2 34554555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	3e-42
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	2e-36

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  141 bits (356), Expect = 3e-42
 Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 35  AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQ 94
           +G P FL K + +V+D +TN +I W++   SFV+ +   F+  LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 95  LNTYGFRKV----------DPDRWEFANEGFLRGQRHLLKNIRRR 129
           LN YGF K+          D D  EF++  F R    LL  I+R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  125 bits (315), Expect = 2e-36
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 36  GPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQL 95
             P F+ K + +V D +    I WS    S VV + + F   +LPKYFKH+NF+SFVRQL
Sbjct: 1   ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 96  NTYGFRKV-----------DPDRWEFANE 113
           N YG+ KV           +  RWEF NE
Sbjct: 61  NMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	92.8
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	92.65
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	91.45
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	91.25
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	89.72
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	86.49
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	83.79

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=5.2e-37  Score=253.71  Aligned_cols=95  Identities=43%  Similarity=0.825  Sum_probs=90.5

Q ss_pred             CCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC----------
Q 018107           35 AGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD----------  104 (360)
Q Consensus        35 ~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----------  104 (360)
                      +++|+||.|||+||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999973          


Q ss_pred             CCCceEecCCccccchhcccccccc
Q 018107          105 PDRWEFANEGFLRGQRHLLKNIRRR  129 (360)
Q Consensus       105 ~d~~eF~h~~F~Rg~~~LL~~IkRr  129 (360)
                      ++.|+|+|++|+||+++||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            4568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=4.7e-31  Score=213.53  Aligned_cols=78  Identities=49%  Similarity=0.901  Sum_probs=73.9

Q ss_pred             CCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccC-----------C
Q 018107           37 PPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVD-----------P  105 (360)
Q Consensus        37 ~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-----------~  105 (360)
                      .|+||.|||.||+||++++||+|+++|++|+|+|+..|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999984           4


Q ss_pred             CCceEecCC
Q 018107          106 DRWEFANEG  114 (360)
Q Consensus       106 d~~eF~h~~  114 (360)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            579999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=92.80  E-value=0.017  Score=46.55  Aligned_cols=75  Identities=15%  Similarity=0.315  Sum_probs=54.1

Q ss_pred             CCchHHHHHHhcc----CCCCCCe--EEEcCCCCeEEEeCCcchhhhhccCccCCCChhhHHhhhcccCccccCCC---C
Q 018107           37 PPPFLTKTYDIVE----DCNTNHI--ISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPD---R  107 (360)
Q Consensus        37 ~p~Fl~KL~~mv~----dp~~~~i--IsWs~~G~sFiI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---~  107 (360)
                      ...|+.|||.+|.    +|.+...  |.|.+++. |.| +...|+..+==      +-.|.-.-|..|||.++.++   .
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lLgi------K~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVMGI------KLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHHTC------CHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHHCC------ChhhhcCcccccCceeeecCCCcc
Confidence            3679999999995    4433222  78999997 777 88889974421      23566777888999988643   3


Q ss_pred             ceEecCCccccc
Q 018107          108 WEFANEGFLRGQ  119 (360)
Q Consensus       108 ~eF~h~~F~Rg~  119 (360)
                      |.+.++.|.|.-
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            567889998764

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.0041  Score=52.07  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccCc----ccc
Q 018107           29 REGLHDAGPPPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYGF----RKV  103 (360)
Q Consensus        29 ~e~~~~~~~p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv  103 (360)
                      ..|....+...--.=|.+||.|+++.++|+|...+-.|.+.|+++.++.--. +-=..-||..+-|-|..|-=    +||
T Consensus        31 ~~~~~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv  110 (142)
T d1gvja_          31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT  110 (142)
T ss_dssp             HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred             ccCCCCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEec
Confidence            4444455556566667889999999999999988888999999998874321 11123578888888877632    344


Q ss_pred             CCCCceE
Q 018107          104 DPDRWEF  110 (360)
Q Consensus       104 ~~d~~eF  110 (360)
                      ...+..|
T Consensus       111 ~g~rl~Y  117 (142)
T d1gvja_         111 AGKRYVY  117 (142)
T ss_dssp             TTSSSEE
T ss_pred             CCcEEEE
Confidence            4455555

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.031  Score=43.89  Aligned_cols=62  Identities=18%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             CchHHHHHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107           38 PPFLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG   99 (360)
Q Consensus        38 p~Fl~KL~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG   99 (360)
                      ..-..=|.+||.|+++.++|+|...+--|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         6 ~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            3334456778999999999999887778999999988864322 1112237888888887763

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.041  Score=43.96  Aligned_cols=56  Identities=20%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107           44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG   99 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG   99 (360)
                      |.++|.||++.++|+|...+.-|.+.|+++.++.--. +-=..-||...-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            5778899999999999998889999999988864322 1123457888889998873

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.034  Score=42.69  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=41.9

Q ss_pred             HHHhccCCCCCCeEEEcC-CCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC
Q 018107           44 TYDIVEDCNTNHIISWSR-GSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG   99 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG   99 (360)
                      |.++|+|+++.++|+|.. ++.-|.+.|+++.++.--. +.=..-||..+-|-|..|-
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY   64 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYY   64 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence            456788999999999998 6788999999988874321 1112347888888887763

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=0.065  Score=45.14  Aligned_cols=68  Identities=16%  Similarity=0.359  Sum_probs=51.0

Q ss_pred             HHHhccCCCCCCeEEEcCCCCeEEEeCCcchhhhhcc-CccCCCChhhHHhhhcccC----ccccCCCCceEe
Q 018107           44 TYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLP-KYFKHNNFSSFVRQLNTYG----FRKVDPDRWEFA  111 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG----FrKv~~d~~eF~  111 (360)
                      |.++|.||++.++|+|...+.-|.+.|+++.++..-. +.=..-||..+-|-|..|-    .+||...+..|.
T Consensus        10 L~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_          10 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            4678899999999999998889999999999875322 1113457888889888773    345566677775

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.79  E-value=0.089  Score=40.41  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=37.4

Q ss_pred             HHHhccCCCCCCeEEEcCCCC-eEEEe--CCcchhhhhcc-C-ccCCCChhhHHhhhccc
Q 018107           44 TYDIVEDCNTNHIISWSRGSN-SFVVW--DPQAFSITLLP-K-YFKHNNFSSFVRQLNTY   98 (360)
Q Consensus        44 L~~mv~dp~~~~iIsWs~~G~-sFiI~--d~~~F~~~vLP-~-yFkh~nfsSFvRQLN~Y   98 (360)
                      |.++|.||++.++|+|...+. .|-+.  ++++.++.--- + .=..=||..+-|-|..|
T Consensus         8 L~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            567889999999999987664 46655  46667653220 1 11234888888988876