Citrus Sinensis ID: 018123

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEccccEEEEccccccccccEEEEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEEcccEEEcccccccccccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEccccccEEccccccEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccEEEEEEEEcEEEEccccccccEEccccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEEcccEEEEcccccccccEEEEEEEEEEEcccccccccEccEEEEEEEEEccccccccccccccccEEEEEEEEccccEEEccccccccccccccccEEEEEEccEEEEEEEccccccEEEEEEEEEEEEEccccccccccccccccEEcccccccEEEEEEcccccccccccccEEEEEEEEccEccccccEEEEEEEEEEEEEEccccEEEEEEEEcEEEccccccHHEEccccccccccccccccccccEEEEEEEEEEEccccEEEEEEEEcccccccccccccccccEccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
mgaqksihagkakidvNVDFTHKLCAslmlppprntssplsLVIGSLcikhpnlfggsekldvswdkglydsnvlvayrrprpewlsqQCFVIqhslspevgvhglpidnfsrsgsggvnlsrlslgldisepisskwsnttslkfehvrpvnddwrsitrdldgfpvtcsgsnhdsMVVLKQEsryakandrsfsrFSMQIEQGIPVLSKWLIFNRFkfvaskgvklgpaflltsltggsivgdmapyQAFAIGglgsvrgygegavgsgrsclvanteltfplnntlegavfmdcgtdlgsgrlvpgnpalrqgkpgsgaglgyglryrspfgslqLDCAINAFQQKTLYfgitnlas
Flexible Loop (DISEMBL)
mgaqksihagkakidvNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISepisskwsnttslkfehvrpvnddwRSITRDLdgfpvtcsgsnhdSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS
Low Complexity Region (SEG)
MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS
Disordered region (IsUnstruct)
***********AKIDVNVDFTHKLCASLMLP*******PLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSR***GGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVL*************FSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLV**************AGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITN***
Disordered Region (DISOPRED)
**AQ***HAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNL**
Disordered Region (DISEMBL)
*********GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS
Disordered Region (DISPRO)
**********KAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9C5J8	732	Outer envelope protein 80	no	no	0.863	0.424	0.423	3e-66
A2X208	665	Outer envelope protein 80	N/A	no	0.866	0.469	0.407	6e-62
Q6H7M7	665	Outer envelope protein 80	no	no	0.866	0.469	0.407	4e-57
Q43715	809	Protein TOC75, chloroplas	N/A	no	0.586	0.260	0.318	9e-18
Q84Q83	817	Protein TOC75, chloroplas	no	no	0.569	0.250	0.305	2e-16
Q9STE8	818	Protein TOC75-3, chloropl	no	no	0.588	0.259	0.290	6e-16
Q5IZC8	396	Protein TOC75-4, chloropl	no	no	0.816	0.742	0.278	1e-14

>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1

 Score =  252 bits (644), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/326 (42%), Positives = 194/326 (59%), Gaps = 15/326 (4%)

Query: 36  TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
           TS PLS +IGS    H NLFG ++KL+VS ++G  DS   + Y  P   W+      + +
Sbjct: 412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDP---WIEGDDKRTSR 468

Query: 90  CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
             ++Q+S +P   VHG   DN S      + + R++ G++ S P   KW+ T  L F+H 
Sbjct: 469 SIMVQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHA 522

Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
              ++    I +D    P+T SG  HD  ++ K ES Y  + D+  + F+  +EQG+PVL
Sbjct: 523 GARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVL 582

Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
            +WL FNR    A KG+ +GPA  L SL+GG +VG  +P++AF IGG  SVRGY EGAVG
Sbjct: 583 PEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVG 642

Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
           SGRS +V + EL+FP+   +EG +F D GTD+GSG  VPG+PA  + KPGSG G G G+R
Sbjct: 643 SGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVR 702

Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
             SP G L+L+ A N       +FG+
Sbjct: 703 VDSPLGPLRLEYAFNDQHAGRFHFGV 728

Plays an essential role during early stages of plastid development.
Arabidopsis thaliana (taxid: 3702)

>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 191/326 (58%), Gaps = 14/326 (4%)

Query: 36  TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
           T+ PLS +IGS    H N+FG ++KL++S ++G  DS   + Y  P   W+      + +
Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSR 400

Query: 90  CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
             ++Q+S +P   +HG           G + + R++ G++ S P   KWS T  L F+H 
Sbjct: 401 TIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHA 455

Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
              +D    I RD     +T SG+ +D  ++ K ES Y  + DRS + F   IEQG+P+L
Sbjct: 456 GARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPIL 515

Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
            +WL FNR      +G ++GPA LL S +GG + G+ +P++AFAIGG  SVRGY EGAVG
Sbjct: 516 PEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVG 575

Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
           SGRS  V + E++  +   LEG VF D G+DL SG  VPG+PA  +GKPGSG G G G+R
Sbjct: 576 SGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGIR 635

Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
             SP G L+L+ A N  Q +  +FG+
Sbjct: 636 VDSPLGPLRLEYAFNDKQARRFHFGV 661

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/326 (40%), Positives = 191/326 (58%), Gaps = 14/326 (4%)

Query: 36  TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWL------SQQ 89
           T+ PLS +IGS    H N+FG ++KL++S ++G  DS   + Y  P   W+      + +
Sbjct: 344 TNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDP---WIDGDNKRTSR 400

Query: 90  CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHV 149
             ++Q+S +P   +HG           G + + R++ G++ S P   KWS T  L F+H 
Sbjct: 401 TIMVQNSRTPGTLIHG-----GDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGLIFQHA 455

Query: 150 RPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVL 209
              +D    I RD     +T SG+ +D  ++ K ES Y  + DRS + F   IEQG+P+L
Sbjct: 456 GARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQGLPIL 515

Query: 210 SKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVG 269
            +WL FNR      +G ++GPA LL S +GG + G+ +P++AFAIGG  SVRGY EGAVG
Sbjct: 516 PEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVG 575

Query: 270 SGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
           SGRS  V + E++  +   LEG VF D G+DL SG  VPG+PA  +GKPGSG G G G+R
Sbjct: 576 SGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGVR 635

Query: 330 YRSPFGSLQLDCAINAFQQKTLYFGI 355
             SP G L+L+ A N  Q +  +FG+
Sbjct: 636 VDSPLGPLRLEYAFNDKQARRFHFGV 661

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 112/245 (45%), Gaps = 34/245 (13%)

Query: 102 GVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR 161
           GV     +NFSR        S+ + GL + E I+   SN      + V P      +   
Sbjct: 555 GVKANITENFSRQ-------SKFTYGLVMEEIITRDESNHICSNGQRVLP------NGAI 601

Query: 162 DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSF------SRFSMQIEQGIPVLSKWLIF 215
             DG P T SG+  D M  L  ++   + N R        SR   Q++QG+ V S +  F
Sbjct: 602 SADGPPTTLSGTGIDRMAFL--QANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSNFPFF 659

Query: 216 NRFKFVASKGVKL-----------GPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYG 264
           NR +   +K ++L            P  +L    GG  VGD+  Y AF +GG  SVRGY 
Sbjct: 660 NRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGG-CVGDLPSYDAFTLGGPYSVRGYN 718

Query: 265 EGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGL 324
            G +G+ R+ L    E+  P+  T   A F + GTDLGS + V GNP +   + G G+  
Sbjct: 719 MGEIGAARNILELAAEIRIPIKGTHVYA-FAEHGTDLGSSKDVKGNPTVVYRRMGQGSSY 777

Query: 325 GYGLR 329
           G G++
Sbjct: 778 GAGMK 782

Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane. The narrowest inner diameter of this channel is approximately 14 Angstroms.

Pisum sativum (taxid: 3888)

>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 31/236 (13%)

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR-----------DLDGFPVT 169
           + R+    +I+E  + +   T  L  E +    D+  SI              +DG P T
Sbjct: 559 VDRVGFKANITESFTRQSKFTYGLVVEEIT-TRDETNSICTHGSRAMPSGGLSMDGPPTT 617

Query: 170 CSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNRFKFVAS 223
            SG+  D M  L  ++   + N    +      R   Q++QG+ + SK   FNR +   +
Sbjct: 618 LSGTGIDRMAFL--QANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLT 675

Query: 224 KGVKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRS 273
           K V L           PA L+        VGD+  Y AF +GG  SVRGYG G +G+ R+
Sbjct: 676 KFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRN 735

Query: 274 CLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
            L   +EL  P+ NT     F++ GTDLGS + V GNP     + G G+  G G++
Sbjct: 736 VLEVASELRIPVRNTYVYG-FVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVK 790

Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 32/244 (13%)

Query: 102 GVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITR 161
           GV     +NF+R        S+ + GL + E  +   S+  +   + + P      S   
Sbjct: 564 GVKANITENFTRQ-------SKFTYGLVMEEITTRDESSHIAANGQRLLP------SGGI 610

Query: 162 DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIF 215
             DG P T SG+  D M  L  ++   + N +  +      R   Q++QG+ + SK+  F
Sbjct: 611 SADGPPTTLSGTGVDRMAFL--QANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFF 668

Query: 216 NRFKFVASKGVKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGE 265
           NR +   +K ++L           P  L+     G  VGD+  Y AF +GG  SVRGY  
Sbjct: 669 NRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNM 728

Query: 266 GAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLG 325
           G +G+ R+      E+  P+ NT   A F++ G DLGS + V GNP     + G G+  G
Sbjct: 729 GELGAARNIAEVGAEIRIPVKNTHVYA-FVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYG 787

Query: 326 YGLR 329
            G++
Sbjct: 788 AGVK 791

Essential protein. Mediates the insertion of proteins targeted to the outer membrane of chloroplasts (By similarity). Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 54/348 (15%)

Query: 14  IDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSN 73
           +D ++DF  ++  +  L  P +  S  SL +GS+ I+  N+F  + KLD    K  Y   
Sbjct: 44  LDPSLDF-FEVTGNCNLGRPNSEGSNQSL-MGSVTIR--NIF--NPKLDDLLSKIEY-VR 96

Query: 74  VLVAYRRPRPEWLSQQCFVIQHSLSPEV----GVHGLPIDNFSRSGSGGVNLSRLSLGLD 129
            L A ++PR     +  F     LSP      G   L    F         + R  L   
Sbjct: 97  FLEAVKKPRNRTF-KTSFFNSRKLSPVFTGGPGYEDLVPPMF---------VGRDCLKAT 146

Query: 130 ISEPISSKWSNTTSLKFEHVRPVNDDWRSITRD-----------LDGFPVTCSGSNHDSM 178
           I+E ++ +   T  + FE +    D+ R I+ +           ++G P T SG+  D +
Sbjct: 147 ITENLTRQRELTYGVMFEEI-ITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHI 205

Query: 179 VVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNRFK-----FVASKGVK 227
             L  ++   + N +  +      +   Q++QG+ + + + +FNR +     F+  K V+
Sbjct: 206 ATL--QANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVE 263

Query: 228 LG------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEL 281
            G      P  +L    GG I GD+  Y  FA+GG  SVRGY  G +G+ ++ L    E+
Sbjct: 264 EGSDKPQPPVLVLHGRYGGCI-GDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEI 322

Query: 282 TFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
             P+ NT   A F + G DLGS + V GNP     K G G+  G G++
Sbjct: 323 RIPVKNTHVYA-FAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVK 369

Mediates the insertion of proteins targeted to the outer membrane of chloroplasts. Required for the import of protein precursors into chloroplasts. Forms the voltage-dependent preprotein translocation channels (hydrophilic beta barrel) of the TOC complex in the chloroplastic outer membrane (By similarity). Required for etioplast formation and/or etioplast-chloroplast transition during deetiolation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
388495508	360	unknown [Lotus japonicus]	1.0	1.0	0.825	1e-179
356550060	360	PREDICTED: outer envelope protein of 80	1.0	1.0	0.827	1e-178
356543648	360	PREDICTED: outer envelope protein of 80	1.0	1.0	0.825	1e-177
42565501	362	Outer membrane OMP85 family protein [Ara	1.0	0.994	0.841	1e-176
224059204	359	predicted protein [Populus trichocarpa]	0.994	0.997	0.812	1e-174
224106696	359	predicted protein [Populus trichocarpa]	0.994	0.997	0.846	1e-173
297818880	365	hypothetical protein ARALYDRAFT_484837 [	1.0	0.986	0.826	1e-173
225462436	360	PREDICTED: outer envelope protein of 80	1.0	1.0	0.802	1e-171
357453267	360	Outer envelope protein of 80 kDa [Medica	1.0	1.0	0.791	1e-170
7635461	435	putative protein [Arabidopsis thaliana]	0.997	0.825	0.747	1e-167

>gi|388495508|gb|AFK35820.1| unknown [Lotus japonicus]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 297/360 (82%), Positives = 333/360 (92%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAGKAKIDVNVDFTHKLCASLM P  R+  +PL LVIGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMFPTLRSYENPLRLVIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSN+LVAYRRPRPEWL+QQ FV+QHSLSPE+ VHG+PI+NFSRSGSGGVN
Sbjct: 61  LDVSWDKGLYDSNILVAYRRPRPEWLAQQSFVLQHSLSPEIAVHGIPINNFSRSGSGGVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LS+LS+GLD+ EP+S+KWS+TT +KFEHVRP+NDD R+I+RD DGFP+TCSGS HDSMVV
Sbjct: 121 LSKLSVGLDLKEPMSTKWSSTTGIKFEHVRPLNDDGRAISRDYDGFPLTCSGSTHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQESR+AKANDRSF  F++QIEQGIPVLSKW++FNRFKFVASKGVKLGPAFLLT LTGG
Sbjct: 181 LKQESRFAKANDRSFFHFNLQIEQGIPVLSKWILFNRFKFVASKGVKLGPAFLLTRLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAF++GGLGSVRGYGEGAVGSGRSCLVAN+ELT PL   LEGA+F+DCGTD
Sbjct: 241 SIVGDMAPYQAFSVGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAIFLDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           L +G LVPGNPALRQGKPGSG GLGYGLR++S FG  Q+D A+NAFQQKTLYFG++NLAS
Sbjct: 301 LRTGHLVPGNPALRQGKPGSGVGLGYGLRFKSQFGHFQVDYAVNAFQQKTLYFGLSNLAS 360

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550060|ref|XP_003543408.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/360 (82%), Positives = 333/360 (92%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAGKAKIDVNVDFTHKLCASLMLP  R+T SP SLVIGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPTLRSTGSPFSLVIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSNVLVAYRRPRPEWL+QQ FV+QHSLSPE+GVHG+P++NFSRSGSGG+N
Sbjct: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLAQQSFVLQHSLSPEIGVHGIPVNNFSRSGSGGIN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSRLS+G+D+ EP SSKWS+TTS+KFEHVRP+NDD R+I RD DGFP+T SG+ HDSMVV
Sbjct: 121 LSRLSVGMDLKEPASSKWSSTTSIKFEHVRPLNDDGRAICRDYDGFPLTSSGNPHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQES++AKAND SF  F++QIEQGIPVLSKW+IFNRFKFVASKG+KLGPAFLLT LTGG
Sbjct: 181 LKQESQFAKANDNSFFHFNLQIEQGIPVLSKWIIFNRFKFVASKGIKLGPAFLLTRLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAF+IGGLGSVRGYGEGAVGSGRSCLVAN+ELT PLN  LEGA+F+DCGTD
Sbjct: 241 SIVGDMAPYQAFSIGGLGSVRGYGEGAVGSGRSCLVANSELTLPLNKMLEGAIFLDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           L SG LVPGNPALRQ KPGSG GLGYGLR++S FG  Q+D A+NA+QQ+TLYFG++NLAS
Sbjct: 301 LRSGHLVPGNPALRQSKPGSGIGLGYGLRFKSQFGHFQVDYAVNAYQQRTLYFGLSNLAS 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543648|ref|XP_003540272.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/360 (82%), Positives = 332/360 (92%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAGKAKIDVNVDFTHKLCASLMLP  R+T SP SLVIGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPTLRSTGSPFSLVIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSNV VAYRRPRPEWL+QQ FV+QHSLSPE+G+HG+P++NFSRSGSGG+N
Sbjct: 61  LDVSWDKGLYDSNVFVAYRRPRPEWLAQQSFVLQHSLSPEIGIHGIPVNNFSRSGSGGIN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSRLS+G+D+ EP SSKWS+TTS+KFEHVRP+NDD R+I RD DGFP+T SG+ HDSMVV
Sbjct: 121 LSRLSVGMDLKEPASSKWSSTTSIKFEHVRPLNDDGRAICRDYDGFPLTSSGNPHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQES++AKAND SF  F++QIEQGIPVLSKW+IFNRFKFVASKG+KLGPAFLLT LTGG
Sbjct: 181 LKQESQFAKANDNSFFHFNLQIEQGIPVLSKWIIFNRFKFVASKGIKLGPAFLLTRLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAF+IGG+GSVRGYGEGAVGSGRSCLVAN+ELT PLN  LEGA+F+D GTD
Sbjct: 241 SIVGDMAPYQAFSIGGVGSVRGYGEGAVGSGRSCLVANSELTLPLNKMLEGAIFLDFGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           L SG LVPGNPALRQGKPGSG GLGYGLR++S FG  Q+D AINAFQQ+TLYFG++NLAS
Sbjct: 301 LRSGHLVPGNPALRQGKPGSGIGLGYGLRFKSQFGHFQVDYAINAFQQRTLYFGLSNLAS 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565501|ref|NP_190002.2| Outer membrane OMP85 family protein [Arabidopsis thaliana] gi|56121918|gb|AAV74240.1| At3g44160 [Arabidopsis thaliana] gi|60543353|gb|AAX22274.1| At3g44160 [Arabidopsis thaliana] gi|332644349|gb|AEE77870.1| Outer membrane OMP85 family protein [Arabidopsis thaliana]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/360 (84%), Positives = 329/360 (91%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAG+AKIDVNVDFTHKLC SLM P  R+TSSPLSLVIGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSNVLVA+RRPRPEW  QQCF IQHSLSPE+GVHG P+DNFSRSGSGGVN
Sbjct: 61  LDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LS+L+LGLD+SEP SSKWS+TTS+KFEHVRP+NDD R+ITRDLDGFP+TCSG+ HDSMVV
Sbjct: 121 LSKLALGLDLSEPASSKWSSTTSIKFEHVRPINDDGRAITRDLDGFPITCSGNTHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQESR+AKA D+  S FSMQIEQGIPV+SKWLIFNRFKFVASKGV+ GPAFLL SLTGG
Sbjct: 181 LKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEL  PLN   EG +F+DCGTD
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELALPLNKMTEGTIFLDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           LGS RLVPGNP++RQGKPG G G GYGLR++SP G LQ+D AINAF QKTLYFG+TNLAS
Sbjct: 301 LGSSRLVPGNPSMRQGKPGFGYGFGYGLRFKSPLGHLQVDYAINAFNQKTLYFGVTNLAS 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059204|ref|XP_002299766.1| predicted protein [Populus trichocarpa] gi|222847024|gb|EEE84571.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 291/358 (81%), Positives = 327/358 (91%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKS+HAGKAKID NVDFTHKLCA+L LP  R+T SPLSL+IGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSVHAGKAKIDANVDFTHKLCAALRLPSLRSTGSPLSLIIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSNV++A+RRPRPEWLSQ+CFVIQHS SPE+GVHG PIDNFSRSGSGGVN
Sbjct: 61  LDVSWDKGLYDSNVIIAFRRPRPEWLSQKCFVIQHSFSPEIGVHGTPIDNFSRSGSGGVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSR+S+GLD +EP +S WS+TTS+KFEHV+ VND WRSITRD+DGFP+T SGS HD+MVV
Sbjct: 121 LSRISVGLDRNEPATSDWSSTTSIKFEHVQIVNDSWRSITRDIDGFPLTRSGSPHDNMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQES+YAKANDRSF +F MQIEQGIP+LSKWLIFN+FKF+A+KGVKLGPAFLL SL GG
Sbjct: 181 LKQESQYAKANDRSFYQFRMQIEQGIPILSKWLIFNKFKFIATKGVKLGPAFLLASLAGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVAN+ELTFPLN  L+GA F+DCGTD
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANSELTFPLNKMLDGAFFLDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNL 358
           L S  LVPGNPA+RQGKPGSG GLGYGLR++SP G   ++ AIN FQQ+T+YFGI+NL
Sbjct: 301 LRSACLVPGNPAMRQGKPGSGVGLGYGLRFKSPIGHFMVNHAINDFQQRTVYFGISNL 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106696|ref|XP_002314252.1| predicted protein [Populus trichocarpa] gi|222850660|gb|EEE88207.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/358 (84%), Positives = 329/358 (91%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAGKAKIDVNVDFTHKLCASLMLP  RNT SPLSL+IGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPSLRNTGSPLSLIIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGL DSNV + YRRPRPEWL Q+CFVIQHS SPE+GVHG PIDNFSRSGSG VN
Sbjct: 61  LDVSWDKGLSDSNVSITYRRPRPEWLCQKCFVIQHSFSPEIGVHGTPIDNFSRSGSGDVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSRLS+GLD +EP SS WS++TS+KFEHV+ VNDD RSITRD+DGFPVTCSGS HDSM+V
Sbjct: 121 LSRLSVGLDRNEPASSDWSSSTSIKFEHVQLVNDDGRSITRDIDGFPVTCSGSPHDSMLV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQES+ AKAND SFSRFSMQIEQGIP+LSKWLIFN+FKF A+KGVKLGPAFLL SLTGG
Sbjct: 181 LKQESQCAKANDHSFSRFSMQIEQGIPILSKWLIFNKFKFTATKGVKLGPAFLLASLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLV N+ELTFPL+  LEGA F+DCGTD
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVGNSELTFPLSKMLEGAFFVDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNL 358
           LGSGRLVPGNPA+RQGKPGSG GLGYGLR++SP G  Q+D AIN+FQQKT+YFGI+NL
Sbjct: 301 LGSGRLVPGNPAMRQGKPGSGVGLGYGLRFKSPAGHFQVDYAINSFQQKTVYFGISNL 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818880|ref|XP_002877323.1| hypothetical protein ARALYDRAFT_484837 [Arabidopsis lyrata subsp. lyrata] gi|297323161|gb|EFH53582.1| hypothetical protein ARALYDRAFT_484837 [Arabidopsis lyrata subsp. lyrata]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/363 (82%), Positives = 328/363 (90%), Gaps = 3/363 (0%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGS---LCIKHPNLFGG 57
           MGAQKSIHAG+AKIDVNVDFTHKLC SLM P  R+TSSPLSLVIG    LCIKHPNLFGG
Sbjct: 1   MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGRQVFLCIKHPNLFGG 60

Query: 58  SEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSG 117
           SEKLDVSWDKGLYDSNVLVA+RRPRPEW  QQCF IQHSLSPE+GVHG P+DNFSRSGSG
Sbjct: 61  SEKLDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSG 120

Query: 118 GVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDS 177
           GVNLS+L++GLD+SEP SSKWS+TTS+KFEHVRP+NDD R+ITRDLDGFP+TCSG+ HDS
Sbjct: 121 GVNLSKLAVGLDLSEPASSKWSSTTSVKFEHVRPINDDGRAITRDLDGFPITCSGNTHDS 180

Query: 178 MVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSL 237
           MVVLKQESR+AKA D+  S FSMQIEQGIPV+SKWLIFNRFKFVASKGV+ GPAFLL SL
Sbjct: 181 MVVLKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASL 240

Query: 238 TGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDC 297
           TGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEL  PLN   EG +F+DC
Sbjct: 241 TGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELAVPLNKMTEGTIFLDC 300

Query: 298 GTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITN 357
           GTDLGS RLVPGNP++RQGKPG G G GYGLR++SP G LQ+D A+NAF QKTLYFG+TN
Sbjct: 301 GTDLGSSRLVPGNPSMRQGKPGYGYGFGYGLRFKSPLGHLQVDYAMNAFNQKTLYFGVTN 360

Query: 358 LAS 360
           LAS
Sbjct: 361 LAS 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462436|ref|XP_002264436.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera] gi|296084049|emb|CBI24437.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/360 (80%), Positives = 326/360 (90%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGA+KSIHAGKA IDVNVDFTHKLC +LML P R++  PLS VIGSLCIKHPNLFG SEK
Sbjct: 1   MGARKSIHAGKATIDVNVDFTHKLCTALMLQPFRDSGGPLSQVIGSLCIKHPNLFGRSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGL+DSN+L+AYRRPRPEWL+QQ F+IQHSLSPE+GVHG   DNFSRS SGGVN
Sbjct: 61  LDVSWDKGLFDSNILIAYRRPRPEWLAQQSFIIQHSLSPEIGVHGFTTDNFSRSVSGGVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSR S+G+D+++P SS WSNTTS++FEHVRP++DD RS++RD DGFPVTCSG+ HDSMVV
Sbjct: 121 LSRFSVGMDLNDPASSNWSNTTSIRFEHVRPISDDGRSVSRDRDGFPVTCSGTFHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQES++AKAND SF++ +MQIEQGIPVLSKWLIFNRFKFVASKGV+LGPAFLL+SLTGG
Sbjct: 181 LKQESQFAKANDHSFTQLNMQIEQGIPVLSKWLIFNRFKFVASKGVRLGPAFLLSSLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSG SCLVAN+ELTFPLN  LEGAVF+D GTD
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGTSCLVANSELTFPLNKILEGAVFLDFGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           LGSGR VPGNPALRQGKPGSG GLGY LR +S  G  Q+D AINAFQ++T+YFGI+NLAS
Sbjct: 301 LGSGRHVPGNPALRQGKPGSGVGLGYSLRMKSRLGHFQVDYAINAFQERTVYFGISNLAS 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453267|ref|XP_003596910.1| Outer envelope protein of 80 kDa [Medicago truncatula] gi|355485958|gb|AES67161.1| Outer envelope protein of 80 kDa [Medicago truncatula]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/360 (79%), Positives = 322/360 (89%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
           MGAQKSIHAGKAKIDVNVDFTHKLC  LML   R+  +PLSLVIGSLCIKHPNLFGGSEK
Sbjct: 1   MGAQKSIHAGKAKIDVNVDFTHKLCTYLMLNTFRSDDNPLSLVIGSLCIKHPNLFGGSEK 60

Query: 61  LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
           LDVSWDKGLYDSN+L+AYRRPR E  + Q FV+QHSLSPE+G+HG+P++NFSRSGSGGVN
Sbjct: 61  LDVSWDKGLYDSNILIAYRRPREECFAHQSFVVQHSLSPEIGIHGIPVNNFSRSGSGGVN 120

Query: 121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
           LSRLS+G+D+ EP SSKWS+TTS+KFEHVRP+NDD R+I+ D DGF +TCSGS HDSMVV
Sbjct: 121 LSRLSVGMDLKEPASSKWSSTTSIKFEHVRPLNDDGRNISMDRDGFALTCSGSPHDSMVV 180

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           LKQESR+ KAND SF  F++QIEQGIPVLSKW+IFNRFKFVA+KG+KLGP  LLT LTGG
Sbjct: 181 LKQESRHTKANDHSFFHFNLQIEQGIPVLSKWIIFNRFKFVATKGIKLGPTLLLTRLTGG 240

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
           SIVGDMAPYQAF+IGGLGSVRGYGEGAVGSGRSCLVAN+ELT PL   LEGA+FMDCGTD
Sbjct: 241 SIVGDMAPYQAFSIGGLGSVRGYGEGAVGSGRSCLVANSELTLPLTKMLEGAIFMDCGTD 300

Query: 301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
           L +G LVPGNPALR GKPGSG GLGYGLR++S FG  Q+D AINAF+Q+TLYFG++NLAS
Sbjct: 301 LRTGYLVPGNPALRHGKPGSGVGLGYGLRFKSQFGHFQVDYAINAFKQRTLYFGLSNLAS 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7635461|emb|CAB88424.1| putative protein [Arabidopsis thaliana]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/400 (74%), Positives = 324/400 (81%), Gaps = 41/400 (10%)

Query: 1   MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIG--------------- 45
           MGAQKSIHAG+AKIDVNVDFTHKLC SLM P  R+TSSPLSLVIG               
Sbjct: 1   MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGRQVSRLNATAYRNIV 60

Query: 46  --------------------------SLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYR 79
                                     SLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVA+R
Sbjct: 61  GVHIICRTKFSYLSFRFKCSFGSVCCSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAFR 120

Query: 80  RPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWS 139
           RPRPEW  QQCF IQHSLSPE+GVHG P+DNFSRSGSGGVNLS+L+LGLD+SEP SSKWS
Sbjct: 121 RPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGVNLSKLALGLDLSEPASSKWS 180

Query: 140 NTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFS 199
           +TTS+KFEHVRP+NDD R+ITRDLDGFP+TCSG+ HDSMVVLKQESR+AKA D+  S FS
Sbjct: 181 STTSIKFEHVRPINDDGRAITRDLDGFPITCSGNTHDSMVVLKQESRFAKATDQGLSHFS 240

Query: 200 MQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGS 259
           MQIEQGIPV+SKWLIFNRFKFVASKGV+ GPAFLL SLTGGSIVGDMAPYQAFAIGGLGS
Sbjct: 241 MQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASLTGGSIVGDMAPYQAFAIGGLGS 300

Query: 260 VRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPG 319
           VRGYGEGAVGSGRSCLVANTEL  PLN   EG +F+DCGTDLGS RLVPGNP++RQGKPG
Sbjct: 301 VRGYGEGAVGSGRSCLVANTELALPLNKMTEGTIFLDCGTDLGSSRLVPGNPSMRQGKPG 360

Query: 320 SGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLA 359
            G G GYGLR++SP G LQ+D AINAF QKTLYF I   A
Sbjct: 361 FGYGFGYGLRFKSPLGHLQVDYAINAFNQKTLYFDIFVFA 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2081423	362	AT3G44160 "AT3G44160" [Arabido	1.0	0.994	0.841	8.5e-168
TAIR|locus:2183164	732	OEP80 "outer envelope protein	0.872	0.428	0.427	1.6e-63
TAIR|locus:2102767	818	TOC75-III "translocon at the o	0.45	0.198	0.338	7.6e-15
TAIR|locus:2122328	396	TOC75-IV "translocon at the ou	0.452	0.411	0.315	1.5e-13
TAIR|locus:2007606	399	TOC75-I "translocon outer memb	0.236	0.213	0.359	2.5e-06

TAIR|locus:2081423 AT3G44160 "AT3G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 1632 (579.6 bits), Expect = 8.5e-168, P = 8.5e-168
 Identities = 303/360 (84%), Positives = 329/360 (91%)

Query:     1 MGAQKSIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEK 60
             MGAQKSIHAG+AKIDVNVDFTHKLC SLM P  R+TSSPLSLVIGSLCIKHPNLFGGSEK
Sbjct:     1 MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGSLCIKHPNLFGGSEK 60

Query:    61 LDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVN 120
             LDVSWDKGLYDSNVLVA+RRPRPEW  QQCF IQHSLSPE+GVHG P+DNFSRSGSGGVN
Sbjct:    61 LDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGVN 120

Query:   121 LSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSGSNHDSMVV 180
             LS+L+LGLD+SEP SSKWS+TTS+KFEHVRP+NDD R+ITRDLDGFP+TCSG+ HDSMVV
Sbjct:   121 LSKLALGLDLSEPASSKWSSTTSIKFEHVRPINDDGRAITRDLDGFPITCSGNTHDSMVV 180

Query:   181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
             LKQESR+AKA D+  S FSMQIEQGIPV+SKWLIFNRFKFVASKGV+ GPAFLL SLTGG
Sbjct:   181 LKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASLTGG 240

Query:   241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTD 300
             SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTEL  PLN   EG +F+DCGTD
Sbjct:   241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELALPLNKMTEGTIFLDCGTD 300

Query:   301 LGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGITNLAS 360
             LGS RLVPGNP++RQGKPG G G GYGLR++SP G LQ+D AINAF QKTLYFG+TNLAS
Sbjct:   301 LGSSRLVPGNPSMRQGKPGFGYGFGYGLRFKSPLGHLQVDYAINAFNQKTLYFGVTNLAS 360

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019867 "outer membrane" evidence=IEA

TAIR|locus:2183164 OEP80 "outer envelope protein of 80 kDa" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 138/323 (42%), Positives = 193/323 (59%)

Query:    36 TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEW---LSQQCFV 92
             TS PLS +IGS    H NLFG ++KL+VS ++G  DS   + Y  P  E     + +  +
Sbjct:   412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIM 471

Query:    93 IQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPV 152
             +Q+S +P   VHG   DN S      + + R++ G++ S P   KW+ T  L F+H    
Sbjct:   472 VQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGAR 525

Query:   153 NDDWRSITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKW 212
             ++    I +D    P+T SG  HD  ++ K ES Y  + D+  + F+  +EQG+PVL +W
Sbjct:   526 DEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEW 585

Query:   213 LIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGR 272
             L FNR    A KG+ +GPA  L SL+GG +VG  +P++AF IGG  SVRGY EGAVGSGR
Sbjct:   586 LCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGR 645

Query:   273 SCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRS 332
             S +V + EL+FP+   +EG +F D GTD+GSG  VPG+PA  + KPGSG G G G+R  S
Sbjct:   646 SYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDS 705

Query:   333 PFGSLQLDCAINAFQQKTLYFGI 355
             P G L+L+ A N       +FG+
Sbjct:   706 PLGPLRLEYAFNDQHAGRFHFGV 728

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0019867 "outer membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2102767 TOC75-III "translocon at the outer envelope membrane of chloroplasts 75-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
 Identities = 62/183 (33%), Positives = 91/183 (49%)

Query:   164 DGFPVTCSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNR 217
             DG P T SG+  D M  L  ++   + N +  +      R   Q++QG+ + SK+  FNR
Sbjct:   613 DGPPTTLSGTGVDRMAFL--QANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFFNR 670

Query:   218 F-----KFVASKGVKLG------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEG 266
                   KF+  + V+ G      P  +L    GG  VGD+  Y AF +GG  SVRGY  G
Sbjct:   671 HQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGC-VGDLPSYDAFVLGGPYSVRGYNMG 729

Query:   267 AVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGY 326
              +G+ R+      E+  P+ NT   A F++ G DLGS + V GNP     + G G+  G 
Sbjct:   730 ELGAARNIAEVGAEIRIPVKNTHVYA-FVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYGA 788

Query:   327 GLR 329
             G++
Sbjct:   789 GVK 791

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0010006 "Toc complex" evidence=ISS

GO:0009658 "chloroplast organization" evidence=ISS;RCA;IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=IDA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0048598 "embryonic morphogenesis" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0048481 "ovule development" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2122328 TOC75-IV "translocon at the outer envelope membrane of chloroplasts 75-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 58/184 (31%), Positives = 92/184 (50%)

Query:   163 LDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFN 216
             ++G P T SG+  D +  L  ++   + N +  +      +   Q++QG+ + + + +FN
Sbjct:   190 INGPPTTLSGTGIDHIATL--QANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFN 247

Query:   217 RFK-----FVASKGVKLG------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGE 265
             R +     F+  K V+ G      P  +L    GG I GD+  Y  FA+GG  SVRGY  
Sbjct:   248 RHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCI-GDLPSYDVFALGGPNSVRGYSM 306

Query:   266 GAVGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLG 325
             G +G+ ++ L    E+  P+ NT   A F + G DLGS + V GNP     K G G+  G
Sbjct:   307 GELGAAKNILELGAEIRIPVKNTHVYA-FAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYG 365

Query:   326 YGLR 329
              G++
Sbjct:   366 LGVK 369

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IDA

GO:0009662 "etioplast organization" evidence=IMP

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2007606 TOC75-I "translocon outer membrane complex 75-I" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 32/89 (35%), Positives = 49/89 (55%)

Query:   243 VGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSC--LVANTELTFPLNNTLEGAVFMDCGTD 300
             +GD+  Y AF++GG   VR Y +G +G+ R+   L    EL   + NT +G  F + G D
Sbjct:   311 LGDLPGYDAFSLGGPNYVR-YTKGELGAARNIVELKVGAELRVNVKNT-QGYAFAEHGND 368

Query:   301 LGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
             LGS + + GNP     + G G+  G G++
Sbjct:   369 LGSSKDMKGNPTAAFRREGHGSSYGVGMK 397

GO:0009507 "chloroplast" evidence=ISM

GO:0019867 "outer membrane" evidence=IEA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G44160	chloroplast outer membrane protein-related; chloroplast outer membrane protein-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- N-terminal protein myristoylation; LOCATED IN- outer membrane; CONTAINS InterPro DOMAIN/s- Bacterial surface antigen (D15) (InterPro-IPR000184); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G48620.1); Has 532 Blast hits to 532 proteins in 164 species- Archae - 0; Bacteria - 318; Metazoa - 2; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 132 (source- NCBI BLink). (362 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G44890	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (281 aa)				•					0.534
	AT1G47340	F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (459 aa)				•					0.530
	PLE	PLE (PLEIADE); microtubule binding; Mutant has defective roots. Essential for giant cell ontoge [...] (707 aa)				•					0.508
	AT3G16740	F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (391 aa)				•					0.457
	AT5G51610	ribosomal protein L11 family protein; ribosomal protein L11 family protein; FUNCTIONS IN- struc [...] (182 aa)				•					0.456
	AT3G26050	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (533 aa)				•					0.430

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	360
TIGR00992	718	TIGR00992, 3a0901s03IAP75, chloroplast envelope pr	4e-31
pfam01103	317	pfam01103, Bac_surface_Ag, Surface antigen	2e-26
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-19
COG4775	766	COG4775, COG4775, Outer membrane protein/protectiv	6e-15
COG0729	594	COG0729, COG0729, Outer membrane protein [Cell env	3e-11
TIGR03303	741	TIGR03303, OM_YaeT, outer membrane protein assembl	1e-08
COG2831	554	COG2831, FhaC, Hemolysin activation/secretion prot	6e-04

>gnl|CDD|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family

 Score =  123 bits (311), Expect = 4e-31
 Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 25/242 (10%)

Query: 123 RLSLGLDISEPISSK------WSNTTSLKFEHVRPVNDDWR----SITRDLDGFPVTCSG 172
           R  +  +I+E  + +               +  R +N + +    S     DG P T SG
Sbjct: 462 RAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPISADGPPTTLSG 521

Query: 173 SNHDSMVVLK----QESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRF-----KFVAS 223
           +  D M  L+    +++          SR   Q++QG+ V S +  FNR      KF+  
Sbjct: 522 TGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYTKFIQL 581

Query: 224 KGVKLG-----PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVAN 278
             V+LG     P  L+     G  VGD+  Y AF +GG  SVRGY  G +G+ R+   A 
Sbjct: 582 NWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIFEAT 641

Query: 279 TELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQ 338
            E+  P+  T     F++ G+DLGS + V GNP +   +PG G+  G G++         
Sbjct: 642 AEIRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYA 700

Query: 339 LD 340
           +D
Sbjct: 701 VD 702

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 718

>gnl|CDD|216300 pfam01103, Bac_surface_Ag, Surface antigen

 Score =  107 bits (268), Expect = 2e-26
 Identities = 83/332 (25%), Positives = 125/332 (37%), Gaps = 48/332 (14%)

Query: 53  NLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFS 112
           NL G  + L VS     Y+ +  +++  P              SL      + L  + + 
Sbjct: 1   NLLGRGQSLSVSLSYSQYEQSFSLSFTDPYF-------LGDGLSLG-----YSLFYNTYD 48

Query: 113 RSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRSITRDLDGFPVTCSG 172
                  +   +   L +  PIS  WS +  L +   +  ++D     R+        S 
Sbjct: 49  EDEYDSYDTKSVGFSLSLGYPISENWSLSLGLSYSRDKIRDEDGSDNIRN------YASQ 102

Query: 173 SNHDSMVVLKQESRYAKANDRSF----SRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKL 228
           +    +  L     Y   ++  F          +E   P+L   + F +    AS    L
Sbjct: 103 TGKSLLSSLSFGLSYDTRDNGLFPTRGYYLRFNLEFAGPILGGDVKFLKLTGDASWYYPL 162

Query: 229 GPAF---LLTSLTGGSIVG-----DMAPYQAFAIGGLGSVRGYGEGAVGS---------G 271
           G      L   +  G ++G      + P + F  GG  SVRGYG G++G          G
Sbjct: 163 GEDHDFVLAARVGLGYLLGYGAKDKLPPSERFFAGGSNSVRGYGYGSIGPRDEDGDALGG 222

Query: 272 RSCLVANTELTFPL--NNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLR 329
           RS   A+ EL +PL     L GA+F+D G    SG   PG     + K    A +G GLR
Sbjct: 223 RSYFTASAELRYPLPFIPNLRGALFVDAGNVWNSGGDTPGGSDGVRSK-NIRASVGVGLR 281

Query: 330 YRSPFGSLQLDCAI------NAFQQKTLYFGI 355
           + SPFG L+ D AI          +   YFGI
Sbjct: 282 WDSPFGPLRFDYAIPLKKPDGDRTEFRFYFGI 313

This entry includes the following surface antigens; D15 antigen from H.influenzae, OMA87 from P.multocida, OMP85 from N.meningitidis and N.gonorrhoeae. The family also includes a number of eukaryotic proteins that are members of the UPF0140 family. There also appears to be a relationship to pfam03865 (personal obs: C Yeats). In eukaryotes, it appears that these proteins are not surface antigens; S. cerevisiae YNL026W (SAM50) is an essential component of the Sorting and Assembly Machinery (SAM) of the mitochondrial outer membrane. The protein was localised to the mitochondria. Length = 317

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 87.6 bits (217), Expect = 7e-19
 Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 19/194 (9%)

Query: 164 DGFPVTCSGSNHDSMVVLKQESRYAKANDRSFS------RFSMQIEQGIPVLSKWLIFNR 217
           DG P T SG+  D M  L  ++   + N +  +      R   Q++QG+ + SK+  FNR
Sbjct: 591 DGPPTTLSGTGIDRMAFL--QANITRDNTKFVNGAVVGDRHIFQVDQGLGIGSKFPFFNR 648

Query: 218 FKFVASKGVKLG----------PAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGA 267
            +   +K ++L           P  L+     G  VGD+  Y AF +GG  SVRGY  G 
Sbjct: 649 HQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGE 708

Query: 268 VGSGRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYG 327
           +G+ R+ L    EL  P+ NT   A F + GTDLGS + V GNP     + G G+  G G
Sbjct: 709 LGAARNILEVAAELRIPVRNTHVYA-FAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVG 767

Query: 328 LRYRSPFGSLQLDC 341
           ++         +D 
Sbjct: 768 VKLGLVRAEYAVDH 781

Length = 796

>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 27/152 (17%)

Query: 215 FNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMA------PYQAFAIGGLGSVRGYGEGAV 268
           + + +   SK   L       SL G    G          Y+ F +GG  SVRG+  G +
Sbjct: 598 YYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYGTKLLPIYERFYLGGSNSVRGFESGGL 657

Query: 269 GS---------GRSCLVANTELTFPLN----NTLEGAVFMDCGTDLGSGRLVPGNPALRQ 315
           G          G S  VA+ EL FPL     + + GA+F D G+   +G     +P+  +
Sbjct: 658 GPKDGYTDALGGTSYFVASAELRFPLPKVIGSGVRGALFFDAGSVWNTGT----DPSTVR 713

Query: 316 GKPGSGAGL----GYGLRYRSPFGSLQLDCAI 343
              GSG+ L    G GLR+ SP G L+ D A 
Sbjct: 714 NFYGSGSELRASAGVGLRWASPLGPLRFDYAF 745

Length = 766

>gnl|CDD|223801 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 28/142 (19%)

Query: 232 FLLTSLTGGSIVG----DMAPYQAFAIGGLGSVRGYGEGAVG---------SGRSCLVAN 278
            L      G+I+     D+ P   F  GG  SVRGYG  ++G          GRS +  +
Sbjct: 459 RLAGRGELGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGS 518

Query: 279 TELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQG-KPGSGAGLGYGLRYRSPFGSL 337
            E  + + +    AVF+D      +G        L    K     G G G+R+ SP G +
Sbjct: 519 LEYQYLVTDPWGLAVFVD------AGSAGNNFTRLFSDLK----KGAGIGVRWDSPVGPI 568

Query: 338 QLDCA--INAFQQK--TLYFGI 355
           + D A  +     K    Y GI
Sbjct: 569 RFDIAVPLEDKDDKKFQFYIGI 590

Length = 594

>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 67/271 (24%), Positives = 95/271 (35%), Gaps = 72/271 (26%)

Query: 105 GLPIDNFSRSGSGGVNLS--RLSLGLDISEPIS-------SKWSNTTSLKFEHVRPVNDD 155
           G PI  + R  S G      ++    D     S        K+   +SL +         
Sbjct: 490 GYPITEYLR-VSLGYGYEQNKIKDDSDSDSSASYFIKEQGGKF-IDSSLSY--------- 538

Query: 156 WRSITRD-LDGFPVTCSGSNHDSMVVLKQESRYA-KANDRSFSRFSMQIEQGIPVLSKWL 213
               + D LD       GS      + +    +A    D  + + +   E  IP      
Sbjct: 539 --GWSYDTLDSGYFPTKGS------IQRLSQEFAGPGGDLKYYKLTYDSEYYIP------ 584

Query: 214 IFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAP-YQAFAIGGLGSVRGYGEGAVG--- 269
           +     +V S   +LG         G    G   P Y+ F  GG+GSVRG+    +G   
Sbjct: 585 LSKEDDWVLSLRGRLG--------YGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRD 636

Query: 270 --------SGRSCLVANTELTFPL-----NNTLEGAVFMDCG----TDLGSGRLVPGNPA 312
                    G +   AN EL FPL     +N L G+VF D G    TD         + +
Sbjct: 637 INDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWGTDQKKEGDYSDDSS 696

Query: 313 LRQGKPGSGAGLGYGLRYRSPFGSLQLDCAI 343
           LR       A +G GLR+ SP G L+   A 
Sbjct: 697 LR-------ASVGVGLRWISPMGPLRFSYAK 720

Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat [Protein fate, Protein and peptide secretion and trafficking]. Length = 741

>gnl|CDD|225387 COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 248 PYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELT--FPLNNTLEGAVFMDCGTDLGSGR 305
             + F+IGG  SVRG+  G+  SG      + EL    P    L+  VF+D G       
Sbjct: 442 SSEKFSIGGRYSVRGFDGGS-LSGDRGWYLSNELRWPLPPGGALQPYVFVDYGK------ 494

Query: 306 LVPGNPALRQGKPGSGAGLGYGLRYR 331
               N +       + AG G GLR  
Sbjct: 495 --VYNNSAEYLSGETLAGAGLGLRGN 518

Length = 554

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
TIGR00992	718	3a0901s03IAP75 chloroplast envelope protein transl	100.0
COG4775	766	Outer membrane protein/protective antigen OMA87 [C	100.0
PRK11067	803	outer membrane protein assembly factor YaeT; Provi	100.0
PLN03138	796	Protein TOC75; Provisional	100.0
TIGR03303	741	OM_YaeT outer membrane protein assembly complex, Y	100.0
COG0729	594	Outer membrane protein [Cell envelope biogenesis,	100.0
PF01103	323	Bac_surface_Ag: Surface antigen; InterPro: IPR0001	100.0
KOG2602	457	consensus Predicted cell surface protein homologou	99.93
COG2831	554	FhaC Hemolysin activation/secretion protein [Intra	99.82
PF03865	404	ShlB: Haemolysin secretion/activation protein ShlB	99.66

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family

Probab=100.00  E-value=7e-43  Score=353.82  Aligned_cols=330  Identities=22%  Similarity=0.268  Sum_probs=243.2

Q ss_pred             CCCeEEEEEEEEEccce--------EEEeCCc---ccCCCCccceEEEEEEeeecccccCceEEEEEEec-----ceEEe
Q 018123           10 GKAKIDVNVDFTHKLCA--------SLMLPPP---RNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKG-----LYDSN   73 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~--------~~~~g~g---y~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g-----~~~~~   73 (360)
                      +++.++|.|+|+|++++        ++.+|+|   |++   ..++.+.++|+++|++|.|++++++++.+     +..+.
T Consensus       335 ~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss---~~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~  411 (718)
T TIGR00992       335 NEGEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLA---SSQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLL  411 (718)
T ss_pred             CCCeEEEEEEEEECCCCceeeeccccccccCCCccccc---ccceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceE
Confidence            56889999999999998        7788888   777   88999999999999999999999999998     77889


Q ss_pred             EEEEeecCCCCCC--C-CceeEEEEeeeccccccCccccc-cccCCCCCceeeeEEEeEEEeeeecCcceeeEEE-----
Q 018123           74 VLVAYRRPRPEWL--S-QQCFVIQHSLSPEVGVHGLPIDN-FSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSL-----  144 (360)
Q Consensus        74 ~~~~y~~P~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  144 (360)
                      +.++|++||+...  . ...+.+++...++..   ..+.. ........+...++.+++.+++++++.|..+.++     
T Consensus       412 ~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~---~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~  488 (718)
T TIGR00992       412 FKVEYTHPYLDGVDNPRNRTYTASCFNSRKLS---PVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEI  488 (718)
T ss_pred             EEEEEecCccCCCCCCccceEEEEEEEecccc---ccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEE
Confidence            9999999997432  1 224556654333211   00000 0001112345677788888888887665444333     


Q ss_pred             -EEEEEEEecCCCC-------------eee------eccCCCceEeeCCCCccceeeeeeeEE------e--ecCCc-ee
Q 018123          145 -KFEHVRPVNDDWR-------------SIT------RDLDGFPVTCSGSNHDSMVVLKQESRY------A--KANDR-SF  195 (360)
Q Consensus       145 -~~~~~~~~~~~g~-------------~~~------~~~~~~~~~~~~D~rD~~~~P~~g~~~------~--~~~d~-~f  195 (360)
                       .++..++.+..+.             ...      .....+.++++||+||++++|++|...      +  .+++. .|
T Consensus       489 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt~G~~~~~~~e~~~~~g~~~~~f  568 (718)
T TIGR00992       489 FTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFF  568 (718)
T ss_pred             eeeeeeeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCCcccEEEEEEEeccCcCCCCceE
Confidence             3433322222111             100      112345678999999999999998533      2  25565 69


Q ss_pred             eEEEEEEEEeEeCccCceEeEEEEEEEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEE
Q 018123          196 SRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCL  275 (360)
Q Consensus       196 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~  275 (360)
                      .|+.+++++|+|+......       .   .+-.+++|++++++|.+.+++|++++|++||.++||||.+++++||+.++
T Consensus       569 ~r~~~~~~~y~pl~~~~~~-------~---~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~SVRGY~~~~lGpGr~~~  638 (718)
T TIGR00992       569 NRHQLTYTKFIQLNWVELG-------A---GKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIF  638 (718)
T ss_pred             EEEEEEEEEEEeccccccc-------c---ccCCCcEEEEEEEeeeEcCCCCchhceecCCCCcccCccCCcccccceee
Confidence            9999999999999643100       0   00123467888988887789999999999999999999999999999999


Q ss_pred             EEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCCCeeEEEEe
Q 018123          276 VANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQQKTLYFGI  355 (360)
Q Consensus       276 ~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~~~~~~f~i  355 (360)
                      .+++|||+|+.+.+ +++|+|+|++|+...++++.+.+..+++.+++|+|+|+||.||+|||||||   -++..+|||+|
T Consensus       639 ~~s~E~r~Pi~~~~-g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~sPiGPiRlD~---~~~~~rf~F~i  714 (718)
T TIGR00992       639 EATAEIRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYAVDH---NEGTGAIFFRF  714 (718)
T ss_pred             EEEEEEEEEecCcc-EEEEEecccccCcccccCCCccccccCCCCccceeEEEEEecCcccEEEEe---cCCCcEEEEec
Confidence            99999999999888 999999999998764433223333345666799999999999999999999   23568999999


Q ss_pred             eecc
Q 018123          356 TNLA  359 (360)
Q Consensus       356 G~~~  359 (360)
                      |++|
T Consensus       715 G~~F  718 (718)
T TIGR00992       715 GERF  718 (718)
T ss_pred             cccC
Confidence            9976

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.7e-42  Score=347.58  Aligned_cols=321  Identities=21%  Similarity=0.306  Sum_probs=241.0

Q ss_pred             CeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCcee
Q 018123           12 AKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCF   91 (360)
Q Consensus        12 ~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~   91 (360)
                      ++|||+|+|+|++++++++|+||++   .+|+.+.++++++|++|.|+.++++++.|+..+.+.++|++|++.  .+ .+
T Consensus       406 ~~vdvvv~VkE~~Tgsi~~G~Gy~s---~~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l~ft~P~f~--~~-~~  479 (766)
T COG4775         406 DQVDVVVDVKERSTGSINFGLGYGS---DSGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSLSFTDPYFL--DD-RV  479 (766)
T ss_pred             CeEEEEEEEEecCceeEEecccccC---CCceEEEEEEEEeecCccccEEEEEEEeccceEEEEEEEeccccc--CC-Cc
Confidence            3999999999999999999999999   999999999999999999999999999999999999999999873  22 24


Q ss_pred             EEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCC------Cee------
Q 018123           92 VIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDW------RSI------  159 (360)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~------  159 (360)
                      .+.....+...  +  .+. .......++..+.++++.+.+++++++++.+++.+++..+.....      ...      
T Consensus       480 slg~~~f~~~~--~--~~~-~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (766)
T COG4775         480 SLGFNLFSNRY--D--TFD-ADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQG  554 (766)
T ss_pred             eeEEEeEeeee--c--ccc-cccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcccccccccccccc
Confidence            44443332210  0  000 011112456677888888888999888888888887765542111      000      


Q ss_pred             -eeccCCCceEeeCCCCccceeeeeeeE------Ee-ecCCceeeEEEEEEEEeEeCccCc-eEeEEEEEEEeeceecCc
Q 018123          160 -TRDLDGFPVTCSGSNHDSMVVLKQESR------YA-KANDRSFSRFSMQIEQGIPVLSKW-LIFNRFKFVASKGVKLGP  230 (360)
Q Consensus       160 -~~~~~~~~~~~~~D~rD~~~~P~~g~~------~~-~~~d~~f~~~~~~~~~~~pl~~~~-~~~~~~~~~~~~~~~~g~  230 (360)
                       .....++.++++||+||++++||+|+.      ++ +|+|..|+|++++.++|+|+.... ++.  +..      .+  
T Consensus       555 ~~~~~~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e~~~~Ggd~~~~K~~~~~~~Y~~l~~~~~~l~--~~~------~~--  624 (766)
T COG4775         555 GKSDLSSLSLGWTYDTRDNALFPTKGSYLSLTQEVAGLGGDIKYYKLELDGSKYYPLTDYIFTLS--LRG------EV--  624 (766)
T ss_pred             CcceeEEEEEeEEEcCCCCcCCCCCCeEEeeeeEEeccCCcceEEEEEEEEEEEEEcccccEEEE--EEE------EE--
Confidence             012346778999999999999999863      33 489999999999999999997764 221  111      11  


Q ss_pred             eeEEEeeecceecCCCCcccccccCCCCccccccCCcccc---------cceEEEEEEEEEEecCC----ceeEEEEEEe
Q 018123          231 AFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGS---------GRSCLVANTELTFPLNN----TLEGAVFMDC  297 (360)
Q Consensus       231 ~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~p---------G~~~~~~~~e~r~~~~~----~~~~~~F~D~  297 (360)
                         ......|.  ..+|++|+|++||.++||||+.+.++|         |+.++.+++|++||++.    ++++++|+|+
T Consensus       625 ---g~~~~~g~--~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~~~r~~lF~D~  699 (766)
T COG4775         625 ---GYGKGYGT--KLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGSGVRGALFFDA  699 (766)
T ss_pred             ---EEeeccCC--cccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCcceEEEEEEEc
Confidence               11111222  148999999999999999999999998         99999999999999984    3789999999


Q ss_pred             eecCCCCCCCCC-CCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123          298 GTDLGSGRLVPG-NPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQ-----QKTLYFGITNLA  359 (360)
Q Consensus       298 G~~~~~~~~~~~-~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~  359 (360)
                      |.+|+...+ +. ...+......++.|+|+||+|.+|+|||++|||+|+.+     ..+|||+||..|
T Consensus       700 G~v~~~~~~-~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPlr~d~a~pi~~~~~D~~q~F~F~iG~~F  766 (766)
T COG4775         700 GSVWNTGTD-PSTVRNFYGSGSELRASAGVGLRWASPLGPLRFDYAFPIKKKEGDDTQRFQFGLGTRF  766 (766)
T ss_pred             ccccccCcc-cccccCCcCcCcceeEEeeeeEEEecCCCcEEEEeecccccCCCCcceeEEEEccccC
Confidence            999986411 10 00111111124589999999999999999999999862     369999999875

>PRK11067 outer membrane protein assembly factor YaeT; Provisional

Probab=100.00  E-value=9.4e-41  Score=347.33  Aligned_cols=319  Identities=19%  Similarity=0.189  Sum_probs=235.6

Q ss_pred             CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCc
Q 018123           10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQ   89 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~   89 (360)
                      .++.|+|+|.|+|++++.+++|+||++   .+++.+.++++++|++|.|++++++++.+...+.+.++|++||+.. ...
T Consensus       408 ~~~~v~l~v~v~e~~~~~~~~g~gy~s---~~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~~l~~~~P~~~~-~~~  483 (803)
T PRK11067        408 SPDQVDVVYKVKERNTGSFNFGVGYGT---ESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV-DGV  483 (803)
T ss_pred             CCCeEEEEEEEEEccCCcEEEEeeecC---cCCEEEEEEEEecccCCcCcEEEEEEEeccceEEEEEEEeCCcCcC-CCc
Confidence            456899999999999999999999999   8899999999999999999999999999988889999999999732 111


Q ss_pred             eeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCC------------C
Q 018123           90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDW------------R  157 (360)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~  157 (360)
                      .+..++.+....      ..   ......++..+..+++.+++++.+.+.+.+++.+++.++.+...            .
T Consensus       484 ~~~~~~~~~~~~------~~---~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (803)
T PRK11067        484 SLGGRIFYNDFE------AD---DADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGE  554 (803)
T ss_pred             eEEEEEEEEecc------cc---ccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcchhHHHHHHHcCC
Confidence            233333332211      00   00112334456677777788888888888888888765543111            0


Q ss_pred             e------e--eeccCCCceEeeCCCCccceeeeeeeEE------e-ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEE
Q 018123          158 S------I--TRDLDGFPVTCSGSNHDSMVVLKQESRY------A-KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVA  222 (360)
Q Consensus       158 ~------~--~~~~~~~~~~~~~D~rD~~~~P~~g~~~------~-~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~  222 (360)
                      .      .  .....++.+++++|++|++++|++|...      + ++++.+|.|+.+++++|+|+..+..+        
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~~gs~~~f~k~~~~~~~y~~l~~~~~~--------  626 (803)
T PRK11067        555 NPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKW--------  626 (803)
T ss_pred             ccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEeecccceEEEEEEEEEEEEEecCCCcE--------
Confidence            0      0  0012245678889999999999998632      2 37899999999999999999753211        


Q ss_pred             eeceecCceeEEEeeeccee----cCCCCcccccccCCCCccccccCCcccc----------------------------
Q 018123          223 SKGVKLGPAFLLTSLTGGSI----VGDMAPYQAFAIGGLGSVRGYGEGAVGS----------------------------  270 (360)
Q Consensus       223 ~~~~~~g~~~l~~~~~~g~~----~~~~p~~~~f~lGG~~~vRGy~~~~~~p----------------------------  270 (360)
                               ++++++.+|.+    ..++|++++|++||.++||||+++++||                            
T Consensus       627 ---------~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~~~~~~~~~~~iG  697 (803)
T PRK11067        627 ---------VLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDGAKDLCKSDDAVG  697 (803)
T ss_pred             ---------EEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCCcCCccccccccccccccccccccCCCCCCCC
Confidence                     11233333322    1369999999999999999999876654                            


Q ss_pred             cceEEEEEEEEEEecC-------CceeEEEEEEeeecCCCCCCCC------CCCccccCCCCCeeeEEEEEEEEcCceEE
Q 018123          271 GRSCLVANTELTFPLN-------NTLEGAVFMDCGTDLGSGRLVP------GNPALRQGKPGSGAGLGYGLRYRSPFGSL  337 (360)
Q Consensus       271 G~~~~~~~~e~r~~~~-------~~~~~~~F~D~G~~~~~~~~~~------~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl  337 (360)
                      |+.++++++|+++|++       ++|++++|+|+|+||+...+..      ..+++. +...+++|+|+|+||.||+|||
T Consensus       698 G~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~s~G~G~r~~sPiGPi  776 (803)
T PRK11067        698 GNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYS-DPSNIRMSAGIALQWMSPLGPL  776 (803)
T ss_pred             CeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccccccccCcC-CCCcEEEEEeEEEEEeCCCCCe
Confidence            7899999999999963       4799999999999998631100      000100 1123459999999999999999


Q ss_pred             EEEEEEecCC-----CeeEEEEeeecc
Q 018123          338 QLDCAINAFQ-----QKTLYFGITNLA  359 (360)
Q Consensus       338 ~~~~a~~~~~-----~~~~~f~iG~~~  359 (360)
                      |||||+|+++     .++|||+||+.|
T Consensus       777 rld~a~pl~~~~~d~~~~~~fsiG~~f  803 (803)
T PRK11067        777 VFSYAQPFKKYDGDKAEQFQFNIGKTW  803 (803)
T ss_pred             EEEEEEeCCCCCCCceeEEEEeccccC
Confidence            9999999973     489999999875

>PLN03138 Protein TOC75; Provisional

Probab=100.00  E-value=6.3e-40  Score=324.83  Aligned_cols=331  Identities=23%  Similarity=0.319  Sum_probs=250.0

Q ss_pred             CCCCeEEEEEEEEE--ccceEEEeCCcccC-CC-----CccceEEEEEEeeecccccCceEEEEEEe-----cceEEeEE
Q 018123            9 AGKAKIDVNVDFTH--KLCASLMLPPPRNT-SS-----PLSLVIGSLCIKHPNLFGGSEKLDVSWDK-----GLYDSNVL   75 (360)
Q Consensus         9 ~~~~~v~l~v~v~E--~~~~~~~~g~gy~~-~~-----~~~g~~~~~~~~~~N~~G~G~~l~~~~~~-----g~~~~~~~   75 (360)
                      .++++|+|+|+|+|  ++++.+.++.+++. ++     ...+..+.++|+++||+|+|+++.++++.     ++....+.
T Consensus       412 ~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~  491 (796)
T PLN03138        412 KNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFK  491 (796)
T ss_pred             CCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeecccCCccceEEE
Confidence            35789999999999  77778888777643 11     24567899999999999999999999998     45678999


Q ss_pred             EEeecCCCCCCC---CceeEEEEeeecccc-cc-CccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEE
Q 018123           76 VAYRRPRPEWLS---QQCFVIQHSLSPEVG-VH-GLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVR  150 (360)
Q Consensus        76 ~~y~~P~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (360)
                      ++|++||+.+..   .+.+.+++.-+++.. .+ +.+    ..+....+...++..++.++++++..+..++++.++...
T Consensus       492 lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~----~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~  567 (796)
T PLN03138        492 LEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGP----GVDEVPPIWVDRAGFKANITENFTRQSKFTYGLVVEEIT  567 (796)
T ss_pred             EEeecccccCCCCcccccEEEEEEecCcCCceeeCCC----CcccCCcceEeecccceEeecccCCCCceEEEEEEEEEE
Confidence            999999995421   124666654444321 00 111    000011223567778888888888776668899999887


Q ss_pred             EecCCCCeee-----------------e--------ccCCCceEeeCCCCccceeeeeeeEEeecCCceeeEEEEEEEEe
Q 018123          151 PVNDDWRSIT-----------------R--------DLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQG  205 (360)
Q Consensus       151 ~~~~~g~~~~-----------------~--------~~~~~~~~~~~D~rD~~~~P~~g~~~~~~~d~~f~~~~~~~~~~  205 (360)
                      ..|..+....                 .        +...+.+.+++|++|++..|++|.           ++.+.+++.
T Consensus       568 ~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~~~~pt~G~-----------~~~~~~EQ~  636 (796)
T PLN03138        568 TRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAVVGD-----------RHIFQVDQG  636 (796)
T ss_pred             eecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCCCCCCCccc-----------eEEEEeeee
Confidence            7765553210                 0        112344577899999999999863           234445555


Q ss_pred             EeCccCceEeEEEEEEEeeceec----------CceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEE
Q 018123          206 IPVLSKWLIFNRFKFVASKGVKL----------GPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCL  275 (360)
Q Consensus       206 ~pl~~~~~~~~~~~~~~~~~~~~----------g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~  275 (360)
                      +|++..+++++|+++.++.++++          .+++|++++++|++.+++|++|.|.|||.+|||||.+++++.|++++
T Consensus       637 lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l  716 (796)
T PLN03138        637 LGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNIL  716 (796)
T ss_pred             ccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCCcHHhcccCCCCcccCcccCcccccceeE
Confidence            66666666666666666555554          35789999999999999999999999999999999999999899999


Q ss_pred             EEEEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC-CCeeEEEE
Q 018123          276 VANTELTFPLNNTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF-QQKTLYFG  354 (360)
Q Consensus       276 ~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~-~~~~~~f~  354 (360)
                      .+++|||+|| .++.+++|+|+|+.|....++++++....++++.-.|+|+|+|    +||||+|||+..+ .+++|||+
T Consensus       717 ~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~syG~Gvr----lGpiR~dYa~~~~~G~~r~hfg  791 (796)
T PLN03138        717 EVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVGVK----LGLVRAEYAVDHNAGTGAIFFR  791 (796)
T ss_pred             EEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCcccceeeE----ecceeEEEeecCCCCCceEEEe
Confidence            9999999999 5678999999999999987777776655667887899999999    8999999999853 68999999


Q ss_pred             eeecc
Q 018123          355 ITNLA  359 (360)
Q Consensus       355 iG~~~  359 (360)
                      ||..|
T Consensus       792 ~GerF  796 (796)
T PLN03138        792 FGERF  796 (796)
T ss_pred             ccccC
Confidence            99875

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein

Probab=100.00  E-value=7.9e-38  Score=323.46  Aligned_cols=315  Identities=21%  Similarity=0.265  Sum_probs=239.8

Q ss_pred             CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCc
Q 018123           10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQ   89 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~   89 (360)
                      .++.++|+|+|+|++++.+.++++|++   ..++.+.++++++|++|.|+++++.++++...+.+.++|++|++.+. ..
T Consensus       382 ~~~~~~v~i~v~e~~~~~~~~~~g~~~---~~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~-~~  457 (741)
T TIGR03303       382 SPDQVDLNVKVKEQPTGSISFGVGYGS---SSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDD-GV  457 (741)
T ss_pred             CCCEEEEEEEEEEccccEEEEeeeecC---CCceEEEEEEEEecccccccEEEEEEEeccceEEEEEEEECCCCcCC-Ce
Confidence            467899999999999999999999998   88999999999999999999999999999888899999999997422 21


Q ss_pred             eeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEecCCCCe-----------
Q 018123           90 CFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWRS-----------  158 (360)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------  158 (360)
                      .+.+++.+...+      ....   ....++..+..+.+.+++++.+++.+.+++.+++.++.+..+..           
T Consensus       458 ~~~~~~~~~~~~------~~~~---~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (741)
T TIGR03303       458 SLGFSIFYSETD------RNYK---NFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDSSASYFIKEQG  528 (741)
T ss_pred             EEEEEEEEEEcc------cccc---cccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcchhHHHHHHHhC
Confidence            333443333221      0000   01123445566677777788888888888888876665321110           


Q ss_pred             eeeccCCCceEeeCCCCccceeeeeeeEE------e-ecCCceeeEEEEEEEEeEeCccC--ceEeEEEEEEEeeceecC
Q 018123          159 ITRDLDGFPVTCSGSNHDSMVVLKQESRY------A-KANDRSFSRFSMQIEQGIPVLSK--WLIFNRFKFVASKGVKLG  229 (360)
Q Consensus       159 ~~~~~~~~~~~~~~D~rD~~~~P~~g~~~------~-~~~d~~f~~~~~~~~~~~pl~~~--~~~~~~~~~~~~~~~~~g  229 (360)
                      ......++.+++++|+||++++|++|...      + .+++.+|.|+.+++++|+|+...  +++               
T Consensus       529 ~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~~~~g~~~~f~k~~~~~~~y~~l~~~~~~~l---------------  593 (741)
T TIGR03303       529 GKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVL---------------  593 (741)
T ss_pred             CceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEEeeecCCceEEEEEEEEEEEEEcCCCCcEEE---------------
Confidence            01123467788999999999999998532      2 36789999999999999999863  433               


Q ss_pred             ceeEEEeeecceec----CCCCcccccccCCCCccccccCCcccc-----------cceEEEEEEEEEEecC-----Cce
Q 018123          230 PAFLLTSLTGGSIV----GDMAPYQAFAIGGLGSVRGYGEGAVGS-----------GRSCLVANTELTFPLN-----NTL  289 (360)
Q Consensus       230 ~~~l~~~~~~g~~~----~~~p~~~~f~lGG~~~vRGy~~~~~~p-----------G~~~~~~~~e~r~~~~-----~~~  289 (360)
                          ++++.+|.+.    .++|++++|++||..+||||++++++|           |+.++.+++|||+|++     .++
T Consensus       594 ----~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~~~~~  669 (741)
T TIGR03303       594 ----SLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPEDNGL  669 (741)
T ss_pred             ----EEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCccCcE
Confidence                3344454432    269999999999999999999998875           9999999999999995     359


Q ss_pred             eEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123          290 EGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAFQ-----QKTLYFGITNLA  359 (360)
Q Consensus       290 ~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~  359 (360)
                      ++++|+|+|+||....+..  .. ......++.|+|+|+||.+|+|||++|||+|+.+     .++|||+||.+|
T Consensus       670 ~~~~F~D~G~v~~~~~~~~--~~-~~~~~~~~~s~G~Glr~~tp~gpi~ld~a~~l~~~~~d~~~~~~f~~G~~F  741 (741)
T TIGR03303       670 RGSVFFDAGNVWGTDQKKE--GD-YSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF  741 (741)
T ss_pred             EEEEEEEeeecccCCcccc--cc-cCCCCcEEEEEEEEEEEECCcCcEEEEEEEeCCCCCCCceEEEEEeCcccC
Confidence            9999999999998742100  00 0011234499999999999999999999999962     589999999876

Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-36  Score=296.53  Aligned_cols=303  Identities=20%  Similarity=0.192  Sum_probs=226.3

Q ss_pred             CeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceEEeEEEEeecCCCCCCCCcee
Q 018123           12 AKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCF   91 (360)
Q Consensus        12 ~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~   91 (360)
                      ..++|.|.|.|++...+.+|+||++   +.|..+.+.|.++|+|++||+++++.++++..+.+...|..|++.+.....+
T Consensus       264 ~~~pv~v~~~~rk~~~~~lG~gyst---~~G~~~~~~w~~~~~~~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~~~~~~  340 (594)
T COG0729         264 GLLPVKVSVSERKENTFELGVGYST---DVGAGLEAGWEKRNLFGRGHSLRIESEISAPLQTLEATYKAPLLFNPLGQYN  340 (594)
T ss_pred             ceeceEEEecccccceEEeeeEEec---cccccceEEeeeecccCcceeEeeeeeeccchhcCceEEEeecccCCcccee
Confidence            3489999999999999999999999   9999999999999999999999999999988888999999999854322233


Q ss_pred             EEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEE--EecCCCCeeeeccCCCceE
Q 018123           92 VIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVR--PVNDDWRSITRDLDGFPVT  169 (360)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~  169 (360)
                      ..+..+..++.        ++.+ ...   ....+.+...+.....|...+++++...+  ..+..+... +...++.++
T Consensus       341 ~~~~~~~~~~~--------~~t~-~~~---~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~g~~~~  407 (594)
T COG0729         341 PVSAGFDRLDL--------YDTE-SDA---YTESLSASRGWDASLGWQRSLALRFSYDNFRQGDISGKTS-LLTPGVEFS  407 (594)
T ss_pred             ccccccccchh--------hccc-ccc---ccceeeeeehhccccCceeEEEEEEEccccccccccCCce-EEecceEEE
Confidence            34433332211        1100 000   11223343334444566666777765543  333334332 456789999


Q ss_pred             eeCCCCccceeeeeeeEEe---------ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEEeeceecCceeEEEeeecc
Q 018123          170 CSGSNHDSMVVLKQESRYA---------KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG  240 (360)
Q Consensus       170 ~~~D~rD~~~~P~~g~~~~---------~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g  240 (360)
                      +.+|+ |+..+|+.|.+..         .+++. +.+.......|+++....                  +.++.|+++|
T Consensus       408 ~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~-~~~~~~~~~~~~~~~~~~------------------~~~~~R~~~G  467 (594)
T COG0729         408 YTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV-DFRLVQARSGYLRTGGAD------------------HRLAGRGELG  467 (594)
T ss_pred             EEEcc-CCCCCCCccceeeeeeeeccccccCch-HHhhhhccceeeecCccc------------------eEEEEecccc
Confidence            99999 9999999986432         14555 444444445555543322                  1234566666


Q ss_pred             eec----CCCCcccccccCCCCccccccCCcccc---------cceEEEEEEEEEEecCCceeEEEEEEeeecCCCCCCC
Q 018123          241 SIV----GDMAPYQAFAIGGLGSVRGYGEGAVGS---------GRSCLVANTELTFPLNNTLEGAVFMDCGTDLGSGRLV  307 (360)
Q Consensus       241 ~~~----~~~p~~~~f~lGG~~~vRGy~~~~~~p---------G~~~~~~~~e~r~~~~~~~~~~~F~D~G~~~~~~~~~  307 (360)
                      .+.    .++|++.||++||..+||||.+++|+|         |..++..++|+||++.++|++++|+|+|.+|++... 
T Consensus       468 ~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~Ey~~~~t~~~~~a~FvD~G~a~n~~~~-  546 (594)
T COG0729         468 AILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSLEYQYLVTDPWGLAVFVDAGSAGNNFTR-  546 (594)
T ss_pred             eEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeEEEEEeccCcEEEEEEEEccccccCCch-
Confidence            553    379999999999999999999999985         899999999999999999999999999999998642 


Q ss_pred             CCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC----CCeeEEEEeeecc
Q 018123          308 PGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF----QQKTLYFGITNLA  359 (360)
Q Consensus       308 ~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~----~~~~~~f~iG~~~  359 (360)
                       ...+++       .++|+||||.||+|||++|+|+|++    ++.+||++||+.+
T Consensus       547 -~~~d~k-------~G~Gigvr~~SPvGPIr~DiA~pl~~~~~~~~~~Yi~iG~~f  594 (594)
T COG0729         547 -LFSDLK-------KGAGIGVRWDSPVGPIRFDIAVPLEDKDDKKFQFYIGIGQEF  594 (594)
T ss_pred             -hhhhhh-------ccceeeEeecCCcCCeEEEeeccccccCCCCeeEEEEecccC
Confidence             123466       9999999999999999999999998    6799999999875

>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []

Probab=100.00  E-value=5.8e-33  Score=259.04  Aligned_cols=276  Identities=23%  Similarity=0.339  Sum_probs=199.6

Q ss_pred             cccccCceEEEEEEecceEEeEEEEeecCCCCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEee
Q 018123           53 NLFGGSEKLDVSWDKGLYDSNVLVAYRRPRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISE  132 (360)
Q Consensus        53 N~~G~G~~l~~~~~~g~~~~~~~~~y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (360)
                      |++|+|++++++++++...+.+.++|++|++..  . .+.+...+..+... ....        ..++..+..+.+.+.+
T Consensus         1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~--~-~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~   68 (323)
T PF01103_consen    1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFG--D-RLSLGFSLYYSSSD-SDEF--------SSYDEQTFGFSLSLGY   68 (323)
T ss_pred             CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCC--C-CEEEEEEEEEEEcc-cccc--------ccceeeecccccccee
Confidence            899999999999999988899999999998732  1 24444433322100 0001        1123344555666666


Q ss_pred             eecCcceeeEEEEEEEEEEecCCCCe------------eeeccCCCceEeeCCCCccceeeeeeeEEe---------ecC
Q 018123          133 PISSKWSNTTSLKFEHVRPVNDDWRS------------ITRDLDGFPVTCSGSNHDSMVVLKQESRYA---------KAN  191 (360)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~D~rD~~~~P~~g~~~~---------~~~  191 (360)
                      ++.+.+.+++++.+.+.++.......            ......++.+++++|++|+.++|++|....         .++
T Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~  148 (323)
T PF01103_consen   69 RISPNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGS  148 (323)
T ss_pred             EcccceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCC
Confidence            77788888899888876654332211            011345678899999999999999986432         267


Q ss_pred             CceeeEEEEEEEEeEeCcc--CceEeEEEEEEEeeceecCceeEEEeeecceec-----CCCCcccccccCCCCcccccc
Q 018123          192 DRSFSRFSMQIEQGIPVLS--KWLIFNRFKFVASKGVKLGPAFLLTSLTGGSIV-----GDMAPYQAFAIGGLGSVRGYG  264 (360)
Q Consensus       192 d~~f~~~~~~~~~~~pl~~--~~~~~~~~~~~~~~~~~~g~~~l~~~~~~g~~~-----~~~p~~~~f~lGG~~~vRGy~  264 (360)
                      +.+|.|+++++++|+|+.+  ++++.                   +++.++.+.     +++|..|+|++||..+||||.
T Consensus       149 ~~~f~k~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~  209 (323)
T PF01103_consen  149 DSNFYKFELSARYYYPLGNNHKFVLA-------------------LRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYR  209 (323)
T ss_pred             cceEEEEEEEEEEEEECccCCceEEE-------------------EeeeeeEeeecccccccchhhhhccCCCCcccccc
Confidence            8899999999999999974  44432                   233333321     249999999999999999999


Q ss_pred             CCcccc---------cceEEEEEEEEEEecC-----CceeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEE
Q 018123          265 EGAVGS---------GRSCLVANTELTFPLN-----NTLEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRY  330 (360)
Q Consensus       265 ~~~~~p---------G~~~~~~~~e~r~~~~-----~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~  330 (360)
                      .++++|         |+.++.+++|+|+|++     ..+++++|+|+|+||+..............++.++.|+|+||||
T Consensus       210 ~~~~~~~~~~~~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~  289 (323)
T PF01103_consen  210 YRSIGPRDGDGDSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVGLRY  289 (323)
T ss_pred             CCccccccccCcccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEEEEE
Confidence            999985         5999999999999994     46999999999999988653221110000012345999999999


Q ss_pred             EcCceEEEEEEEEecCC-----CeeEEEEeeecc
Q 018123          331 RSPFGSLQLDCAINAFQ-----QKTLYFGITNLA  359 (360)
Q Consensus       331 ~tp~Gpl~~~~a~~~~~-----~~~~~f~iG~~~  359 (360)
                      .+|+|||++|||+++++     ..+|||+||+.|
T Consensus       290 ~~~~g~lr~d~a~~l~~~~~~~~~~f~f~~g~~F  323 (323)
T PF01103_consen  290 DTPIGPLRFDYAYPLNKPPGDDRNRFYFSIGQTF  323 (323)
T ss_pred             ecCcEEEEEEEEEEccCCCCCcceEEEEEEeCCC
Confidence            99999999999999852     349999999876

D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane

>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]

Probab=99.93  E-value=2.2e-26  Score=210.87  Aligned_cols=315  Identities=18%  Similarity=0.208  Sum_probs=214.1

Q ss_pred             ccCCCCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEec-ceEEeEEEEeecCCCC
Q 018123            6 SIHAGKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKG-LYDSNVLVAYRRPRPE   84 (360)
Q Consensus         6 ~~~~~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g-~~~~~~~~~y~~P~~~   84 (360)
                      +-++.++..+|++.|.|.+.  +....|  |+.+.....+.+++..+|++|+|+.|+.++.++ .....+.+++..|.+.
T Consensus        99 g~~~~p~~~~Vt~~v~E~kr--~tg~~G--T~~gn~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~  174 (457)
T KOG2602|consen   99 GSDALPGGLVVTFLVTEPKR--LTGSTG--TDVGNREGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFH  174 (457)
T ss_pred             CCCCCCCceeEEEEeeecch--heeecc--ccccCCCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccC
Confidence            45667788899999999887  333333  321233346888999999999999999999999 5668899999999986


Q ss_pred             CCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCc--ceeeEEEEEEEEE---------Eec
Q 018123           85 WLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSK--WSNTTSLKFEHVR---------PVN  153 (360)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~  153 (360)
                      +.. +++.....+...+.   .+++.++        .....+.+.+....-..  ..+.+..-|+...         ++.
T Consensus       175 ~~~-~~~~~~~~~~~~d~---~~~ss~d--------~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~  242 (457)
T KOG2602|consen  175 GLK-TPFSSFSIFRTQDW---MKWSSLD--------ETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRR  242 (457)
T ss_pred             CCC-cchhhhhhhhhhcc---ccccccc--------ccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHH
Confidence            543 22332222221211   1222221        12223333332221100  0111111121111         122


Q ss_pred             CCCCeeeeccCCCceEeeCCCCccceeeeeee------EEe-ecCCceeeEEEEEEEEeEeCccCceEeEEEEEEEeece
Q 018123          154 DDWRSITRDLDGFPVTCSGSNHDSMVVLKQES------RYA-KANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGV  226 (360)
Q Consensus       154 ~~g~~~~~~~~~~~~~~~~D~rD~~~~P~~g~------~~~-~~~d~~f~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~  226 (360)
                      +.|..   ...++.+++.+|+||..+.||+|.      |++ ..++..|.|.+++.+...|+....++            
T Consensus       243 qaG~~---L~s~L~~tfv~D~Rd~~~~ptrG~~~k~~~e~~g~~~~~sf~k~e~~lq~avpl~~~~~~------------  307 (457)
T KOG2602|consen  243 QAGHS---LKSSLSYTFVFDKRDSSIIPTRGILLKSTSELAGLFGDVSFLKSELDLQKAVPLGFDATL------------  307 (457)
T ss_pred             HhhHH---HHHhhcceEEEeccCCcccccccceeEeehhhcCcccchhhhhhhhhheeccccccceee------------
Confidence            23322   246788999999999999999985      344 36789999999999999998765332            


Q ss_pred             ecCceeEEEeeecceec--C--CCCcccccccCCCCccccccCCcccc--------cceEEEEEEEEEEecCC------c
Q 018123          227 KLGPAFLLTSLTGGSIV--G--DMAPYQAFAIGGLGSVRGYGEGAVGS--------GRSCLVANTELTFPLNN------T  288 (360)
Q Consensus       227 ~~g~~~l~~~~~~g~~~--~--~~p~~~~f~lGG~~~vRGy~~~~~~p--------G~~~~~~~~e~r~~~~~------~  288 (360)
                             .+++.+|.+.  +  .+++.|||++||+.+||||....|||        |+.++.+.+.+-+|++.      .
T Consensus       308 -------s~~~~~G~l~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~  380 (457)
T KOG2602|consen  308 -------SFSFSGGVLKPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSG  380 (457)
T ss_pred             -------EeeEeeeeeecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCcccccccc
Confidence                   2344555443  2  57788999999999999999999986        99999999999998873      5


Q ss_pred             eeEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcC-ceEEEEEEEEecCC------CeeEEEEeeecc
Q 018123          289 LEGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSP-FGSLQLDCAINAFQ------QKTLYFGITNLA  359 (360)
Q Consensus       289 ~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp-~Gpl~~~~a~~~~~------~~~~~f~iG~~~  359 (360)
                      +++++|+.+|++.+...+.+. .......+..+.|+|+|+.+.+| +..+++.|..|+..      ..+|+|++|..|
T Consensus       381 fr~h~F~naG~l~~l~s~~~~-~~~~kl~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~F  457 (457)
T KOG2602|consen  381 FRGHVFANAGNLANLSSEAPK-NTIPKLLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGIDF  457 (457)
T ss_pred             eeeEEEeccccccccCccccc-chhhhhhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEecccccC
Confidence            899999999999887642221 11222234456999999999999 89999999999852      478999998764

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]

Probab=99.82  E-value=9.4e-18  Score=165.50  Aligned_cols=311  Identities=20%  Similarity=0.218  Sum_probs=196.5

Q ss_pred             CCCeEEEEEEEEEccceEEEeCCcccCCCCccceEEEEEEeeecccccCceEEEEEEecceE---EeEEEEeecCCCCCC
Q 018123           10 GKAKIDVNVDFTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYD---SNVLVAYRRPRPEWL   86 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~~~---~~~~~~y~~P~~~~~   86 (360)
                      +++.-+|+|++++++..++.+++.-.........++.+++...|++|.|+++++++..+...   .++.++|+.|+-.+ 
T Consensus       207 ~~G~S~l~i~~~~~~~~~~~~~~DN~G~~~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~-  285 (554)
T COG2831         207 EPGESDLVIKVQQGKPWRVSASADNYGSKSTGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW-  285 (554)
T ss_pred             CCCccEEEEEeeeCCCeEEEEEecCCCCcCccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc-
Confidence            55778999999997777777766333323355688999999999999999999999885332   48999999998632 


Q ss_pred             CCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecC--cceeeEEEEEEEEEEecC---CC-Ceee
Q 018123           87 SQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISS--KWSNTTSLKFEHVRPVND---DW-RSIT  160 (360)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~g-~~~~  160 (360)
                         .+.+..++......-..+...+      ++..++...++.+++++.+  ...+++++.+.+.+..+.   .. ....
T Consensus       286 ---~~~~~~s~~~y~~~~~~~~~~~------~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~  356 (554)
T COG2831         286 ---TFSLGASYSEYRQVLEGPFDVL------DYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQR  356 (554)
T ss_pred             ---eeEEEeeeeeeEeecccCCceE------EEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccc
Confidence               1334433332110000111111      1112234444555555433  334455555554332111   11 0001


Q ss_pred             eccCCCceEee------CCCCccceeeeeeeE-----Ee----ec-CCceeeEEEEEEEEeEeCcc-CceEeEEEEEEEe
Q 018123          161 RDLDGFPVTCS------GSNHDSMVVLKQESR-----YA----KA-NDRSFSRFSMQIEQGIPVLS-KWLIFNRFKFVAS  223 (360)
Q Consensus       161 ~~~~~~~~~~~------~D~rD~~~~P~~g~~-----~~----~~-~d~~f~~~~~~~~~~~pl~~-~~~~~~~~~~~~~  223 (360)
                      +....+.+.++      ..+.|.-+.-.+|..     ..    .+ .+..|.++.+++++.+|+.. .+.+         
T Consensus       357 r~~~~~~~gl~~~~~~~~~~~~~~l~~~~G~~~lGa~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~---------  427 (554)
T COG2831         357 RRLTAVELGLSGRRYLGGGTLDASLGYRRGLGALGASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLY---------  427 (554)
T ss_pred             cccccEEecceEEEEeccceecccchhhhCchhhcCCCCchhhcCCCCcceEEEEEeeEEEeecccccEEE---------
Confidence            11111222111      122222222222221     10    01 35789999999999999976 4432         


Q ss_pred             eceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEecCCc--eeEEEEEEeeecC
Q 018123          224 KGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNT--LEGAVFMDCGTDL  301 (360)
Q Consensus       224 ~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~~~~--~~~~~F~D~G~~~  301 (360)
                                ..++.+......+++.|+|.+||..+||||+.+.+. ||..+.++.|+++++...  +...+|+|+|.||
T Consensus       428 ----------~~~~~~Q~s~~~L~s~e~fsiGg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~  496 (554)
T COG2831         428 ----------ATQFNAQYSGDPLLSSEKFSIGGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVY  496 (554)
T ss_pred             ----------EEEEEEEEcCCCCCcHHHeecCCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEe
Confidence                      123333333457999999999999999999999999 999999999999999987  9999999999999


Q ss_pred             CCCCCCCCCCccccCCCCCeeeEEEEEEEEcCc-eEEEEEEEEecCC-------CeeEEEEeeec
Q 018123          302 GSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPF-GSLQLDCAINAFQ-------QKTLYFGITNL  358 (360)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~-Gpl~~~~a~~~~~-------~~~~~f~iG~~  358 (360)
                      .......        ....+.|+|+|+||.-.. .-.++++|+|+.+       ...++|++...
T Consensus       497 ~~~~~~~--------~~~~l~g~~~Glr~~~~~~f~~~l~~g~pl~~p~~~~~~~~~~~~~~~~~  553 (554)
T COG2831         497 NNSAEYL--------SGETLAGAGLGLRGNLKDGFSYDLDLGRPLSKPAGFDNRRTVVGFSFSYS  553 (554)
T ss_pred             ccccccC--------CCCeeEEEEEeEEeeecCcceeEEEecccccCccccCCCCceeEEEEEEE
Confidence            8832111        122348999999999877 7889999999862       46777777643

>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate

Probab=99.66  E-value=7.7e-14  Score=133.97  Aligned_cols=300  Identities=22%  Similarity=0.241  Sum_probs=134.3

Q ss_pred             CCCeEEEEEEEEEccceEEEeCC-cccCCCCccceEEEEEEeeecccccCceEEEEEEecc------eEEeEEEEeecCC
Q 018123           10 GKAKIDVNVDFTHKLCASLMLPP-PRNTSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGL------YDSNVLVAYRRPR   82 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~~~~~g~-gy~~~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~------~~~~~~~~y~~P~   82 (360)
                      +++.-+|+|++++.+..++.+++ .+++ .......+.+.+...|++|.++.+++++....      ..+.+.+.|..|+
T Consensus        48 ~~G~S~i~i~~~~~~~~~~~~~~DN~Gs-~~TG~~q~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~  126 (404)
T PF03865_consen   48 EPGTSDIVIENQPSKPWSGSLSLDNSGS-KSTGRYQGGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPY  126 (404)
T ss_dssp             STTEEEEEEEEEE-SS-EEEEEEEE-SS-S-SS-EEEEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEecccCCEEEEEEEecCCc-cccceEEEEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeee
Confidence            34778899999887666655543 1111 22456789999999999999999999986642      2456789999998


Q ss_pred             CCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeeecCcceeeEEEEEEEEEEec---CCC-Ce
Q 018123           83 PEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVN---DDW-RS  158 (360)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-~~  158 (360)
                      -.|    .+.+..+++............++    ...++..+.+.+.+....+....+++.+.+++.+..+   +.. ..
T Consensus       127 G~~----~ls~~~s~s~y~~~~~~~~~~~~----~~G~s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v  198 (404)
T PF03865_consen  127 GYW----TLSLFASYSDYRYHQGLSYSTYD----LSGDSRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEV  198 (404)
T ss_dssp             TTE----EEEEEEEEEEEE---SSSS---------EEEEEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---
T ss_pred             ece----EEEEEEEEeEEEEeeccccceEE----eeeeEEEEEEEeeEEEEECCCceEEEEEEEEEEEcccccccceeee
Confidence            632    13333333221100000011110    0113344555554443334343344444444433222   111 11


Q ss_pred             eeeccCCCceEeeCCC-Cccceee-eeeeEEee---------------cCCceeeEEEEEEEEeEeCcc-CceEeEEEEE
Q 018123          159 ITRDLDGFPVTCSGSN-HDSMVVL-KQESRYAK---------------ANDRSFSRFSMQIEQGIPVLS-KWLIFNRFKF  220 (360)
Q Consensus       159 ~~~~~~~~~~~~~~D~-rD~~~~P-~~g~~~~~---------------~~d~~f~~~~~~~~~~~pl~~-~~~~~~~~~~  220 (360)
                      ...+...+.+.+++.. ...-.+- .-+++.+.               +.+.+|.|..+.+..+.|+.- ...+    . 
T Consensus       199 ~~~~lt~~~lgl~~~~~~~~g~~~~~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~----~-  273 (404)
T PF03865_consen  199 QSRRLTSLELGLNHSRYLGGGVLSANLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPF----S-  273 (404)
T ss_dssp             EEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE-------------------EEEEEE---EEEEEEEEETTEEE----E-
T ss_pred             ccceeeEEEeccceEEEecCcEEEEeEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeecCccE----E-
Confidence            1223334444444321 1111100 00111110               124567777776666655421 1111    1 


Q ss_pred             EEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEecCC---ceeEEEEEEe
Q 018123          221 VASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNN---TLEGAVFMDC  297 (360)
Q Consensus       221 ~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~~~---~~~~~~F~D~  297 (360)
                                  +..++.+.....+++..|+|.+||..+||||+.+++. |+..+.++.|+.+++.-   .+...+|+|+
T Consensus       274 ------------~~~~~~gQys~d~L~ssEq~siGG~~sVRGF~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~  340 (404)
T PF03865_consen  274 ------------YNSSLSGQYSNDNLYSSEQFSIGGRYSVRGFDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDY  340 (404)
T ss_dssp             ------------EEEEEEEEE-SS-SSSSEE--S------TT----S---SS-SS--EESEEEEEEE--SS-EEEEEEEE
T ss_pred             ------------EEEEEEEEECCCCCChhheeccCCCceEcccCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEE
Confidence                        1122333333468999999999999999999999999 99999999999987642   4677899999


Q ss_pred             eecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEE--EEec
Q 018123          298 GTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDC--AINA  345 (360)
Q Consensus       298 G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~--a~~~  345 (360)
                      |.|+.....    ...+     ...++++|+++......+.+++  ++++
T Consensus       341 G~v~~~~~~----~~~~-----~~~g~~~Gl~~~~~~~~~dl~vs~g~~l  381 (404)
T PF03865_consen  341 GRVRGNKNN----QGWR-----SLAGLSAGLRLRYKQAQLDLEVSRGWPL  381 (404)
T ss_dssp             EEEEESSSS-----EEE-----EEEEEEEEEEEESSSEEE----------
T ss_pred             EEEecCCCC----CCCc-----eEEEEEEEEEEEEcceeeeecccccccc
Confidence            999975421    1111     1256667777666666666655  5666

HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554

 Score = 62.5 bits (151), Expect = 6e-11
 Identities = 44/323 (13%), Positives = 90/323 (27%), Gaps = 48/323 (14%)

Query: 45  GSLCIKHPNLFGGSEKLDVSWDKGLYDS-------NVLVAYRRPRPEWLSQQCFVIQHSL 97
            +  +   +L G ++ L +      Y         N  + Y  P              + 
Sbjct: 232 YNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDL-QTGYSTY 290

Query: 98  SPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFEHVRPVNDDWR 157
              +        +   S S G+  +R          +     +  S+            R
Sbjct: 291 RNLLKTRYGQYQSAGNSRSFGLKATR---------LLYRDTRSQFSVYGGL------KLR 335

Query: 158 SITRDLDGFPVTCSGSNHDSMVVLKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLI--- 214
                L G  +     +      +    +Y+     +     +   +G+ V +       
Sbjct: 336 QNKNYLAGTRLD---VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYD 392

Query: 215 -------FNRFKFVASKGVKLGPA----FLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGY 263
                   +RF    +    +  A       + L        +       +G   +VRGY
Sbjct: 393 ERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVRGY 452

Query: 264 GEGAVGSGRSCLVANTELTFPLNNTLEGAVFMDC---GTDLGSGRLVPGNPALRQGKPGS 320
                 SG S +  +  LT P+  +L G         G D+G+ +    +      +   
Sbjct: 453 NLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDA-----RTIR 507

Query: 321 GAGLGYGLRYRSPFGSLQLDCAI 343
            AGL  G+R+  P+  +    + 
Sbjct: 508 MAGLAAGVRFDLPYARMSFTYSK 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 39/280 (13%), Positives = 76/280 (27%), Gaps = 90/280 (32%)

Query: 14  IDVNVDFTHK----LCASLM------LPPPRNTSSPLSL-VIGSLCIKHPNLFG-----G 57
              ++  T      L    +      LP    T++P  L +I          +       
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 58  SEKL----DVSWD-------KGLYDS------NVLVAYRRPRPE------W--------- 85
            +KL    + S +       + ++D       +  +      P       W         
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVM 405

Query: 86  -----LSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSR-------LSLGLDISEP 133
                L +   V +      + +  + ++           L R       +    D  + 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 134 ISSKWSN-------------TTSLKFEHVRPVNDDWRSITRDL--DGFPVTCSGSNHDSM 178
           I                       +    R V  D+R + + +  D      SGS  +++
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 179 VVLKQESRYAKANDRSFSR-------FSMQIEQGIPVLSK 211
             LK    Y   ND  + R       F  +IE+ + + SK
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 41/363 (11%), Positives = 86/363 (23%), Gaps = 156/363 (42%)

Query: 20  FTHKLCASLMLPPPRNTSSPLSLVIGSLCIKHPNL----FGGSEKLDVSW---------- 65
            + +    +++     +      +  +L  K   +         +++  +          
Sbjct: 46  LSKEEIDHIIMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 66  ----DKGLY---------DSNVLVAYRRPRPE-------WLSQQCFVIQHSLSPE--VGV 103
                  +Y         D+ V   Y   R +        L +        L P   V +
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--------LRPAKNVLI 155

Query: 104 HGLPIDNFSRSGSG--------------------GV----------------NLSRLSLG 127
            G+        GSG                     +                 L +L   
Sbjct: 156 DGVL-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 128 LDISEPISSKWSNTTSLKFEHVRP----------------VNDD-WRS------------ 158
           +D +    S  S+   L+   ++                 V  +   +            
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 159 --ITRD------LDGFPVTCSGSNHDSMVVLKQESR--YAKANDRSFSRFSMQIEQGIP- 207
              TR       L     T    +H SM +   E +    K  D        ++    P 
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 208 VLSKWLI----------FNRFKFVASKGVKLGPAFLLTSLTGGSIVGDMAP------YQA 251
            LS  +I          ++ +K V    +      + +SL        + P      +  
Sbjct: 329 RLS--IIAESIRDGLATWDNWKHVNCDKLT---TIIESSLN------VLEPAEYRKMFDR 377

Query: 252 FAI 254
            ++
Sbjct: 378 LSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 60/205 (29%)

Query: 181 LKQESRYAKANDRSFSRFSMQIEQGIPVLSKWLIFNRFKFVASKGVKLGPAFLLTSLTGG 240
           +K E R      R +     ++     V +K+ + +R +       KL  A  L  L   
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYL----KLRQA--LLELRPA 150

Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPLNNTLEGAVF-MD--- 296
             V          I G+           GSG++ +  +  L++ +   ++  +F ++   
Sbjct: 151 KNV---------LIDGVL----------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 297 CGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQ------------------ 338
           C +      L      L Q  P   +   +    +    S+Q                  
Sbjct: 192 CNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 339 LD-----CAINAF--QQKTLYFGIT 356
           L       A NAF    K L   +T
Sbjct: 250 LLNVQNAKAWNAFNLSCKIL---LT 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
2qdz_A	554	TPSB transporter FHAC; beta barrel, potra domain,	100.0

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A

Probab=100.00  E-value=1.3e-31  Score=266.95  Aligned_cols=312  Identities=13%  Similarity=0.074  Sum_probs=213.7

Q ss_pred             CCCeEEEEEEEEEccceEEEeCCcccC--CCCccceEEEEEEeeecccccCceEEEEEEecc-------eEEeEEEEeec
Q 018123           10 GKAKIDVNVDFTHKLCASLMLPPPRNT--SSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGL-------YDSNVLVAYRR   80 (360)
Q Consensus        10 ~~~~v~l~v~v~E~~~~~~~~g~gy~~--~~~~~g~~~~~~~~~~N~~G~G~~l~~~~~~g~-------~~~~~~~~y~~   80 (360)
                      +++.++|+|+|+|+++..+.++++..+  .....+..+.+.++++|++|.|++++++++.+.       ..+.+.++|+.
T Consensus       195 ~~g~~~l~v~v~e~~~~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~  274 (554)
T 2qdz_A          195 EYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV  274 (554)
T ss_dssp             STTEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred             CCCeeEEEEEEeeCCcEEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence            468999999999988877777665422  222456899999999999999999999999985       67899999999


Q ss_pred             CCCCCCCCceeEEEEeeeccccccCccccccccCCCCCceeeeEEEeEEEeeee--cCcceeeEEEEEEEEEEec-CCCC
Q 018123           81 PRPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPI--SSKWSNTTSLKFEHVRPVN-DDWR  157 (360)
Q Consensus        81 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~g~  157 (360)
                      |+..+    .+.+++.+.....    .+....  ....+...+..+++.+++++  ...+.+++++.+.+.+..+ ..+.
T Consensus       275 P~~~~----~~~~~~~~~~~~~----~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (554)
T 2qdz_A          275 PLGRT----RLDLQTGYSTYRN----LLKTRY--GQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGT  344 (554)
T ss_dssp             EETTE----EEEEEEEEEEEEC----CCSSSS--CCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTT
T ss_pred             EEecC----eEEEEEEEeEEEE----EccCCc--ceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCc
Confidence            98631    3444444432210    000000  01122233344555555554  4456566666655544322 1111


Q ss_pred             ---eeeeccCCCceEeeCCCCcc--ceeeeeeeEEe-------------ecCCceeeEEEEEEEEeEeC---ccCceEeE
Q 018123          158 ---SITRDLDGFPVTCSGSNHDS--MVVLKQESRYA-------------KANDRSFSRFSMQIEQGIPV---LSKWLIFN  216 (360)
Q Consensus       158 ---~~~~~~~~~~~~~~~D~rD~--~~~P~~g~~~~-------------~~~d~~f~~~~~~~~~~~pl---~~~~~~~~  216 (360)
                         ........+.+++++|++|.  .+.|+-++..+             .+++.+|.|+.+++++++|+   ...+.+  
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~--  422 (554)
T 2qdz_A          345 RLDVSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQW--  422 (554)
T ss_dssp             SCCCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEE--
T ss_pred             CccccCceEEEEEEEEEEEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEE--
Confidence               11223456778888888876  55553322211             13578999999999999996   332221  


Q ss_pred             EEEEEEeeceecCceeEEEeeecceecCCCCcccccccCCCCccccccCCcccccceEEEEEEEEEEec-----C--Cce
Q 018123          217 RFKFVASKGVKLGPAFLLTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELTFPL-----N--NTL  289 (360)
Q Consensus       217 ~~~~~~~~~~~~g~~~l~~~~~~g~~~~~~p~~~~f~lGG~~~vRGy~~~~~~pG~~~~~~~~e~r~~~-----~--~~~  289 (360)
                                       .+++.++...+++|++|+|++||..+||||++++++||+..+.+++|+|+|+     .  ..+
T Consensus       423 -----------------~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~  485 (554)
T 2qdz_A          423 -----------------ASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASV  485 (554)
T ss_dssp             -----------------EEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSC
T ss_pred             -----------------EEEEEeEecCCCCCcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceE
Confidence                             1233333334579999999999999999999999998999999999999996     3  478


Q ss_pred             eEEEEEEeeecCCCCCCCCCCCccccCCCCCeeeEEEEEEEEcCceEEEEEEEEecC-------CCeeE-EEEeeecc
Q 018123          290 EGAVFMDCGTDLGSGRLVPGNPALRQGKPGSGAGLGYGLRYRSPFGSLQLDCAINAF-------QQKTL-YFGITNLA  359 (360)
Q Consensus       290 ~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~s~G~Gl~~~tp~Gpl~~~~a~~~~-------~~~~~-~f~iG~~~  359 (360)
                      .+.+|+|+|+||+...+.  ...+       +.|+|+|+||.+|++|+++++|+|+.       +..+| ||+||..|
T Consensus       486 ~~~~F~D~G~v~~~~~~~--~~~~-------~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~F  554 (554)
T 2qdz_A          486 APFVGADVGALKSNHPDA--RTIR-------MAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF  554 (554)
T ss_dssp             EEEEEEEEEEEECSSSSC--CEEE-------EEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred             EEEEEEEEEEEecCCCCC--CCCE-------EEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCceEEEEEEEEEC
Confidence            999999999999765311  1223       38999999999999999999999984       24789 99999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00