Citrus Sinensis ID: 018145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | 2.2.26 [Sep-21-2011] | |||||||
| A9X7L0 | 364 | Anthranilate N-methyltran | N/A | no | 1.0 | 0.989 | 0.813 | 1e-171 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.969 | 0.961 | 0.523 | 1e-108 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.972 | 0.969 | 0.516 | 1e-107 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.947 | 0.944 | 0.527 | 1e-106 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.971 | 0.528 | 1e-106 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.95 | 0.936 | 0.514 | 1e-106 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.918 | 0.529 | 1e-105 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.944 | 0.931 | 0.525 | 1e-105 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.986 | 0.972 | 0.513 | 1e-105 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.95 | 0.952 | 0.502 | 1e-105 |
| >sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/364 (81%), Positives = 324/364 (89%), Gaps = 4/364 (1%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
MGSLSE + E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G
Sbjct: 1 MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60
Query: 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
LSA EIA LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG GERLY L VSKYFV ++
Sbjct: 61 LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120
Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
DGASLG+FMALPLDKVFMESW+G+K AVMEGGIPFNRVHGMHIFEYAS N +F++TYH A
Sbjct: 121 DGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRA 180
Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
MFNHSTIA++RILEHY+GF+NV +LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA
Sbjct: 181 MFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDA 240
Query: 237 PSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296
SY GVEHVGGNMFESVPEGDAILMKWILHCWDD+ CLRILKNCYKA P NGKVIVMNS+
Sbjct: 241 ASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSV 300
Query: 297 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIM 356
VPE PEVSS+ARETSLLDVLLMTRDGGGRERT+KE+TELAI AGFKGINFA CVCNL+IM
Sbjct: 301 VPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIM 360
Query: 357 EFFK 360
EFFK
Sbjct: 361 EFFK 364
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Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others. Ruta graveolens (taxid: 37565) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/357 (52%), Positives = 252/357 (70%), Gaps = 8/357 (2%)
Query: 12 QKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQL 68
K+ +EEEE+ AM+LA VLPM ++AI+L + E+I K+G +S E+AAQL
Sbjct: 7 DNKNSMTKEEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQL 66
Query: 69 QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGH 123
QN AP+MLDR+LRLL S+ VL C++ G ERLY+L PV K+ N+DG S+
Sbjct: 67 PTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAA 126
Query: 124 FMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTI 183
+ + DKV MESW LKDAV+EGGIPFN+ +GM FEY +PRFN+ +++ M NHSTI
Sbjct: 127 LLLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTI 186
Query: 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVE 243
M++ILE Y+GFQ ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY GV+
Sbjct: 187 IMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVD 246
Query: 244 HVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEV 303
HVGG+MF SVP+GDAI MKWI H W D HCL+ LKNC++A+P NGKVI+ ++PE P+
Sbjct: 247 HVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDS 306
Query: 304 SSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+ + + T +DV+++ + GG+ERT+KE+ LA AGF+G C N +IME K
Sbjct: 307 TLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 245/358 (68%), Gaps = 8/358 (2%)
Query: 11 AQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQ 67
A + +EEE++ AMQLA VLPM ++AI+L + E+I K+G +S ++AAQ
Sbjct: 4 ATNTPQINSDEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQ 63
Query: 68 LQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLG 122
L N A +MLDR+LRLL S+ +LEC + G ERLY L PV K+ N+DG S+
Sbjct: 64 LPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMA 123
Query: 123 HFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182
+ DKV MESW L DAV++GGIPFN+ +GM FEY +PRFN+ +++ M NHST
Sbjct: 124 PLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHST 183
Query: 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGV 242
I M++ILE Y GF ++ +VDVGGG G TL+MI SKYP IK +NFDLPHV++DAPSY GV
Sbjct: 184 ITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGV 243
Query: 243 EHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE 302
EHVGG+MF SVP+GDAI MKWI H W D+HC++ LKNCY A+P NGKVI+ ++PE P+
Sbjct: 244 EHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPD 303
Query: 303 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
A + +DV+++ + GG+ERT+KE+ LA AAGFK N A C N +IME K
Sbjct: 304 TGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 243/349 (69%), Gaps = 8/349 (2%)
Query: 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
+EEE++ AMQLA VLPM ++AI+L + E+I KAG +S E+AAQL N +A
Sbjct: 13 DEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQLLTTNAEAH 72
Query: 77 MMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
+MLDR+LRLL S+ +LEC + G +RLY L PV K+ N+DG S+ + DK
Sbjct: 73 VMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDK 132
Query: 132 VFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEH 191
V MESW LKDAV++GGIPFN+ +GM FEY +PRFN+ +++ M NHSTI M++ILE
Sbjct: 133 VLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILET 192
Query: 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251
Y GF ++ +VDVGGG G TL+MI SKYP IK +NFDLPHVV+DAPSY GVEHVGG+MF
Sbjct: 193 YTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVEHVGGDMFV 252
Query: 252 SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 311
SVP+GDAI MKWI H W D HC++ LK CY+A+P NGKVI+ ++PE P+ A +
Sbjct: 253 SVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVILAECVLPEAPDTGLATKNVV 312
Query: 312 LLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+DV+++ + GG+ERT+KE+ LA A+GFK N C N +IME K
Sbjct: 313 HIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCAYNSWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/348 (52%), Positives = 245/348 (70%), Gaps = 8/348 (2%)
Query: 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPM 77
EEE+ AM LA VLPM ++AI+L + E+IAKAG +S E+AAQL N +AP+
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62
Query: 78 MLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
MLDR+LRLL ++ VL+C ++ G ERLY L PV K+ N DG S+ + + DKV
Sbjct: 63 MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122
Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
MESW LKDAV++GGIPFN+ +GM FEY +PRFN+ +++ M NHSTI M++ILE Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182
Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
GF+ ++ +VDVGGG G TL+MI SKYP IK +NF+LPHVV+DAPS++GVEHVGG+MF S
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242
Query: 253 VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312
VP+GDAI MKWI H W DDHC ++LKNCY+A+P NGKVI+ ++PE P+ S A +
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+DV+++ + GG+ERT+KE+ LA AGFK N +IME K
Sbjct: 303 VDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/350 (51%), Positives = 242/350 (69%), Gaps = 8/350 (2%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKA 75
++EEE+ AMQLA VLPM ++AI+L + E IAKAG +S ++AA L +
Sbjct: 16 DDEEEACMFAMQLASASVLPMVLKSAIELNLLESIAKAGPGAYVSPSQLAAALPSSQPDT 75
Query: 76 PMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
P+MLDR+LRLL S+ VL C + + ERLY L PV K+ N DG S+ + + D
Sbjct: 76 PVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFLTKNSDGVSMAPLLLMNQD 135
Query: 131 KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILE 190
K+ MESW LKDAV++GGIPFN+ +GM FEY +PRFN+ +++ M NHSTI M++IL+
Sbjct: 136 KILMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTITMKKILQ 195
Query: 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
Y+GF ++ +VDVGGG G TL+MI SKYP +K +NFDLPHVV+DAPSYAGVEHVGG+MF
Sbjct: 196 TYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGINFDLPHVVEDAPSYAGVEHVGGDMF 255
Query: 251 ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 310
SVP+GDAI MKWI H W D HCL LKNCYKA+P +GKVI+ I+PE P+ +
Sbjct: 256 VSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKVILAECILPEAPDSKLTTKNV 315
Query: 311 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
L+DV+++ + GG+ERT+KE+ AGFK N A C N +++E++K
Sbjct: 316 ILIDVIMLAHNPGGKERTEKEFEAFGKQAGFKSFNKACCAYNTWVIEYYK 365
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/351 (52%), Positives = 238/351 (67%), Gaps = 11/351 (3%)
Query: 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA------GELSAPEIAAQLQAQNVK 74
+EE+ AMQLA VLPM +AAI+L V EI+AK+ +S EIAAQL N
Sbjct: 18 DEEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLPTTNPD 77
Query: 75 APMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLGHFMALPL 129
AP+MLDR+LRLL S+ V+ CS+ ERLY L PV K+ N+DG SL +
Sbjct: 78 APVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQ 137
Query: 130 DKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERIL 189
DKV MESW LKDA+++GGIPFN+ +GM FEY +PRFN+ ++ M +HSTI M++I
Sbjct: 138 DKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIF 197
Query: 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNM 249
E Y GF+ + +VDVGGG G LSMI +KYP IK +NFDLPHV++DAP Y GVEHVGG+M
Sbjct: 198 EMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDM 257
Query: 250 FESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 309
F SVP+GDAI MKWI H W D+HCL+ LKNCY A+P +GKVIV I+P P+ S A +
Sbjct: 258 FVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKG 317
Query: 310 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D +++ + GG+ERT+KE+ LAI AGFKG A C N Y+MEF K
Sbjct: 318 VIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 242/348 (69%), Gaps = 8/348 (2%)
Query: 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPM 77
+EE+ AMQLA VLPM ++A++L + EIIAKAG ++S EIA+QL N AP+
Sbjct: 16 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPV 75
Query: 78 MLDRMLRLLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKV 132
MLDRMLRLL + +L CSV + RLY L V+KY V N+DG S+ + DKV
Sbjct: 76 MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKV 135
Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
MESW LKDAV++GGIPFN+ +GM FEY +PRFN+ +++ M +HSTI M++ILE Y
Sbjct: 136 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
GF+ ++ LVDVGGG G ++ I SKYP IK +NFDLPHV++DAPSY GVEHVGG+MF S
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 253 VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312
+P+ DA+ MKWI H W D+HCL+ LKNCY+A+P NGKVIV I+P P+ S A +
Sbjct: 256 IPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVH 315
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+DV+++ + GG+ERT+KE+ +LA AGF+G N YIMEF K
Sbjct: 316 IDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/368 (51%), Positives = 249/368 (67%), Gaps = 13/368 (3%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
MGS E Q + +EE+ AMQLA VLPM +AAI+L + EI+AKAG
Sbjct: 1 MGSTGETQMTPT-----QVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGV 55
Query: 59 -LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV---SGG--ERLYALNPVSKYF 112
LS +IA+QL +N AP+MLDRMLRLL S+ +L S+ + G ERLY L PV K+
Sbjct: 56 FLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFL 115
Query: 113 VSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNET 172
N++G S+ + DKV +ESW LKDAV+EGGIPFN+ +GM FEY +PRFN+
Sbjct: 116 TKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKV 175
Query: 173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHV 232
++ M +HSTI M++ILE Y+GF+ + +VDVGGG G L+MI SKYP IK +NFDLPHV
Sbjct: 176 FNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHV 235
Query: 233 VQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292
++DAP Y GVEHVGG+MF SVP+GDAI MKWI H W D+HCL+ LKNCY A+P NGKVI+
Sbjct: 236 IEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVIL 295
Query: 293 MNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCN 352
I+P P+ S A + +DV+++ + GG+ERT++E+ LA AGF+G N A N
Sbjct: 296 GECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFN 355
Query: 353 LYIMEFFK 360
Y++EF K
Sbjct: 356 TYVIEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/350 (50%), Positives = 244/350 (69%), Gaps = 8/350 (2%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKA 75
+ E+E++ AMQLA VLPM ++A++L + EI+AKAG +S E+AAQL +N +A
Sbjct: 10 QTEDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEA 69
Query: 76 PMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKYFVSNKDGASLGHFMALPLD 130
P+MLDRMLRLL ++ VL C++ ERLY+L PV K N DG S+ + + D
Sbjct: 70 PVMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADGVSVAPLLLMNQD 129
Query: 131 KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILE 190
KV MESW L DAV++GG+PFN+ +GM FEY +PRFN+ ++ M +HST+ M++ILE
Sbjct: 130 KVLMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTMTMKKILE 189
Query: 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
Y+GF+ + +VDVGGG G T++MI SKYP IK +NFDL HV++DAP+Y GVEHVG +MF
Sbjct: 190 DYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVGRDMF 249
Query: 251 ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 310
SVP+ DAI MKWI H W D+HCL+ LKNCY+A+P NGKV+V I+PE P+ S+A +
Sbjct: 250 VSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNA 309
Query: 311 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D++++ + GG+ERT+KE+ LA AGF G A C ++MEF K
Sbjct: 310 VHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| 342161927 | 364 | RecName: Full=Anthranilate N-methyltrans | 1.0 | 0.989 | 0.813 | 1e-169 | |
| 224128073 | 358 | catechol o-methyltransferase related [Po | 0.952 | 0.958 | 0.606 | 1e-125 | |
| 225453640 | 359 | PREDICTED: quercetin 3-O-methyltransfera | 0.991 | 0.994 | 0.569 | 1e-121 | |
| 224068173 | 359 | catechol o-methyltransferase [Populus tr | 0.952 | 0.955 | 0.582 | 1e-120 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 0.966 | 0.969 | 0.576 | 1e-118 | |
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 0.936 | 0.893 | 0.589 | 1e-118 | |
| 224068181 | 336 | catechol o-methyltransferase [Populus tr | 0.922 | 0.988 | 0.595 | 1e-117 | |
| 147785075 | 382 | hypothetical protein VITISV_028012 [Viti | 0.95 | 0.895 | 0.566 | 1e-116 | |
| 225453636 | 358 | PREDICTED: quercetin 3-O-methyltransfera | 0.95 | 0.955 | 0.566 | 1e-116 | |
| 268528131 | 356 | caffeic acid O-methyltransferase 3 [Goss | 0.941 | 0.952 | 0.550 | 1e-113 |
| >gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/364 (81%), Positives = 324/364 (89%), Gaps = 4/364 (1%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GE 58
MGSLSE + E EE+EEESYS AMQL+M +VLPMATQ+AIQLGVFEIIAKA G
Sbjct: 1 MGSLSESHTQYKHGVEVEEDEEESYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKAPGGR 60
Query: 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG--GERLYALNPVSKYFVSNK 116
LSA EIA LQAQN KAP+MLDRMLRLLVSHRVL+CSVSG GERLY L VSKYFV ++
Sbjct: 61 LSASEIATILQAQNPKAPVMLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFVPDQ 120
Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
DGASLG+FMALPLDKVFMESW+G+K AVMEGGIPFNRVHGMHIFEYAS N +F++TYH A
Sbjct: 121 DGASLGNFMALPLDKVFMESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRA 180
Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
MFNHSTIA++RILEHY+GF+NV +LVDVGGG GVTLSMI SKYP I+A+NFDLPHVVQDA
Sbjct: 181 MFNHSTIALKRILEHYKGFENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDA 240
Query: 237 PSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296
SY GVEHVGGNMFESVPEGDAILMKWILHCWDD+ CLRILKNCYKA P NGKVIVMNS+
Sbjct: 241 ASYPGVEHVGGNMFESVPEGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSV 300
Query: 297 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIM 356
VPE PEVSS+ARETSLLDVLLMTRDGGGRERT+KE+TELAI AGFKGINFA CVCNL+IM
Sbjct: 301 VPETPEVSSSARETSLLDVLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIM 360
Query: 357 EFFK 360
EFFK
Sbjct: 361 EFFK 364
|
Source: Ruta graveolens Species: Ruta graveolens Genus: Ruta Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/346 (60%), Positives = 271/346 (78%), Gaps = 3/346 (0%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
+E ++E++ +AMQLA+ VLPM +AIQLG+FEIIAKAG +LSA ++AAQL +N
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNPD 72
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
APMMLDR+LRLL SH VL CSV G ERLY+L PVSK++V NKDG SLG FMAL D VF+
Sbjct: 73 APMMLDRILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRNKDGVSLGPFMALIQDNVFL 132
Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
+SW LKDAV+EGG+ F+RVHG H FEY +PRFN+ ++ AM+N +T+ +E +LE Y G
Sbjct: 133 QSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEAYTG 192
Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP 254
F+N+++LV++GGG G T+ I SKYPQIK +NFDLPHV++ APS GVEHVGG+MFESVP
Sbjct: 193 FKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFESVP 252
Query: 255 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD 314
+GDAI +KWILH W DDHCL++LKNCYKA+P NGKVIVM S++ + S AAR S LD
Sbjct: 253 KGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAISQLD 312
Query: 315 VLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
VL+MT++ GG+ERT+ E+ LA AGF+GI + + VCN ++MEFFK
Sbjct: 313 VLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/360 (56%), Positives = 275/360 (76%), Gaps = 3/360 (0%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS 60
MGS +E ++ ++ HE+ + E SY AMQL VLPM Q +I+LG+F+IIAK G+ S
Sbjct: 1 MGSSAEEKQSSRLCHEDGDVEPCSY--AMQLVTSSVLPMVMQTSIELGLFDIIAKLGQAS 58
Query: 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGA 119
A EIA++L +N +AP+MLDRML LL +H VL CS + G ER+YAL PVSKYF SN+DG
Sbjct: 59 ASEIASRLPTKNPEAPIMLDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQDGV 118
Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN 179
S G +AL DKVFM+SW LK+A++EGGIPFNRVHG H FEY +PRFN+ ++ AMFN
Sbjct: 119 SFGPLLALIQDKVFMDSWSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFN 178
Query: 180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY 239
H+TI + +ILE Y+GF+++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A ++
Sbjct: 179 HTTIIVNKILESYKGFEHLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAF 238
Query: 240 AGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299
GVEH+GG+MFESVP+GDAI MKWILH W DDHCL++LKNCYKA+P +GKVI++ ++PE
Sbjct: 239 PGVEHIGGDMFESVPKGDAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPE 298
Query: 300 IPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 359
IPE S + D++++T++ GG+ERT+KE+ +LAI AGF GI + V ++ME F
Sbjct: 299 IPEKGSTVKAICQTDLIMLTQNPGGKERTRKEFLDLAIGAGFAGIRYECYVSCYWVMEIF 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/347 (58%), Positives = 266/347 (76%), Gaps = 4/347 (1%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVK 74
+E ++E++ +AMQLA+ VLPM AIQLG+FEIIAKAG +LSA +IAA+L N
Sbjct: 13 DEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPD 72
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
P MLDR+LRLL SH+VL C V G ER Y+L PVS YFV N++G SL FMAL + V +
Sbjct: 73 TPKMLDRILRLLASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIHENVIL 132
Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
+SW LKDAV+EGG+ F+RVHG+H FEY +PRFN+ ++ AM+N +T+ +LE Y G
Sbjct: 133 QSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNMLEKYNG 192
Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP 254
F+N+++LVD+GGG G T+ +TSKYPQIK +NFDLPHV++ AP+Y GVEHVGG+MFESVP
Sbjct: 193 FKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVP 252
Query: 255 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD 314
+GDAI +KWILH W DDHCL++LKNCYKA+P +GKVIVM S++P + S AA+ S LD
Sbjct: 253 KGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAISQLD 312
Query: 315 VL-LMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
VL +M+++ GG+ERT+ E+ LA AAGF+GI F + VCN ++MEFFK
Sbjct: 313 VLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/352 (57%), Positives = 267/352 (75%), Gaps = 4/352 (1%)
Query: 13 KKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQL- 68
+ H +EE +E++ +AMQLA+G LPM+ AAI+LGVFEIIAKAG +LSA EI A++
Sbjct: 8 RLHPIDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIP 67
Query: 69 QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128
QN A + LDR+LRLL SH VL CS++G ERLY+LNPVSKYFV N+DG SLG FMAL
Sbjct: 68 DVQNPDAAITLDRVLRLLASHNVLGCSLNGLERLYSLNPVSKYFVPNQDGISLGPFMALI 127
Query: 129 LDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERI 188
DKVF++SW LKDAV+EGG PFN+ HG H F Y+ + RFN ++ AMF+H+ + + +I
Sbjct: 128 QDKVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMFHHTNLVITKI 187
Query: 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 248
LE Y+GF+ +++L+DVGGG G TL I SKYP +K +NFDLPHVV+ AP+ GVEHV G+
Sbjct: 188 LETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPAIPGVEHVAGD 247
Query: 249 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308
MFESVP+G+AI MKWILH W D+HCLR+LKNCY+A+P +GKVIVM++++P +PE AA+
Sbjct: 248 MFESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAVLPVMPETGKAAK 307
Query: 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
D+++MT GG ERT+ E+ +A AAGF+GI + C CN +IMEFFK
Sbjct: 308 ANFQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIMEFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/348 (58%), Positives = 269/348 (77%), Gaps = 11/348 (3%)
Query: 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLD 80
S+ +AMQL L M+ Q+AI+LGVF+IIA+ G +LS+ IAA++ +N +APMM+D
Sbjct: 30 SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVD 89
Query: 81 RMLRLLVSHRVLECSV---SGG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
R+LRLL SH VL CS +GG +R+Y+L PVSKYFVS+++G SLG M L DKVFM
Sbjct: 90 RILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFM 149
Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
ESW LKDAV+EGGIPFNRVHGMH FEY +PRFN+ ++ AMFNH+TI ++++L Y+G
Sbjct: 150 ESWSQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKG 209
Query: 195 FQ--NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
+ N+ +LVDVGGG GVTL++ITS+Y IK +NFDLPHVV APSY GVEHVGG+MF S
Sbjct: 210 LEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGDMFAS 269
Query: 253 VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312
VP GDAI MKWILH W D+HCL++LKNCYKA+P NGKVIV+ +++P +PE S+A + TS
Sbjct: 270 VPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQ 329
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
LDV++MT++ GG+ER+++E+ LA AGF GI + VCN ++MEFFK
Sbjct: 330 LDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/336 (59%), Positives = 257/336 (76%), Gaps = 4/336 (1%)
Query: 29 MQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRL 85
MQLA+ VLPM AIQLG+FEIIAKAG +LSA +IAA+L N P MLDR+LRL
Sbjct: 1 MQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRL 60
Query: 86 LVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVM 145
L SH+VL C V G ER Y+L PVS YFV N++G SL FMAL + V ++SW LKDAV+
Sbjct: 61 LASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKDAVL 120
Query: 146 EGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVG 205
EGG+ F+RVHG+H FEY +P+FN+ ++ AM+N +T+ +LE Y GF+N+++LVD+G
Sbjct: 121 EGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDIG 180
Query: 206 GGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWIL 265
GG G T+ ITSKYP IK +NFDLPHV++ AP+Y GVEHVGG+MFESVP+GDAI +KWIL
Sbjct: 181 GGLGHTMKAITSKYPHIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWIL 240
Query: 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-TRDGGG 324
H W DDHCL++LKNCYKA+PG+GKVIVM S++P + S AA+ S LDVL+M T++ GG
Sbjct: 241 HNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPGG 300
Query: 325 RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+ERT+ E+ LA AAGF+GI F + VCN ++MEFFK
Sbjct: 301 KERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147785075|emb|CAN75450.1| hypothetical protein VITISV_028012 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/344 (56%), Positives = 262/344 (76%), Gaps = 2/344 (0%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
E+ + E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP+
Sbjct: 16 EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75
Query: 78 MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G +AL DKVFM+S
Sbjct: 76 ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134
Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
W LK+A++EGGIPFNRVHG H FEY +PRFN+ ++ AMFNH+T+ + +ILE Y+GF+
Sbjct: 135 WSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFE 194
Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256
++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+G
Sbjct: 195 HLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKG 254
Query: 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 316
DAI MKWILH W DDHCL++LKNCYKA+P +GKVIV+ ++PEIPE S + D++
Sbjct: 255 DAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVKAICQTDLI 314
Query: 317 LMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
++T++ GG+ERT+KE+ +L I AGF GI + V ++ME FK
Sbjct: 315 MLTQNPGGKERTRKEFLDLTIGAGFAGIRYECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453636|ref|XP_002266899.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 195/344 (56%), Positives = 262/344 (76%), Gaps = 2/344 (0%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
E+ + E S+AMQL VLPM Q +I+LG+F+IIA G+ SA EIA++L +N +AP+
Sbjct: 16 EDGDVEPCSYAMQLVTSSVLPMVMQTSIELGLFDIIANLGQASASEIASRLPTKNQEAPI 75
Query: 78 MLDRMLRLLVSHRVLECS-VSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+LDRML LL +H VL CS + G ER+YAL PVSKYF SN+ G S G +AL DKVFM+S
Sbjct: 76 ILDRMLYLLTTHSVLSCSAIDGDERVYALTPVSKYFASNQ-GVSFGPLLALIQDKVFMDS 134
Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
W LK+A++EGGIPFNRVHG H FEY +PRFN+ ++ AMFNH+T+ + +ILE Y+GF+
Sbjct: 135 WSQLKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTVIVNKILESYKGFE 194
Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256
++ R+VDVGGG G TLS+ITSKYP I+A+NFDLPHV++ A +Y GV+H+GG+MF SVP+G
Sbjct: 195 HLTRVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAYPGVKHIGGDMFVSVPKG 254
Query: 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 316
DAI MKWILH W DDHCL++LKNCYKA+P +GKVIV+ ++PEIPE S + D++
Sbjct: 255 DAIFMKWILHDWSDDHCLKLLKNCYKALPEHGKVIVVEGVLPEIPEKGSTVKAICQTDLI 314
Query: 317 LMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
++T++ GG+ERT+KE+ +L I AGF GI + V ++ME FK
Sbjct: 315 MLTQNPGGKERTRKEFLDLTIGAGFAGIRYECYVSCYWVMEIFK 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/347 (55%), Positives = 259/347 (74%), Gaps = 8/347 (2%)
Query: 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMM 78
EES+S+A+Q+ VLPM+ AA+QL +F I+AK G +LSA EIAAQL N +A M
Sbjct: 10 EESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQLATNNSEAASM 69
Query: 79 LDRMLRLLVSHRVLECSVSGGER-----LYALNPVSKYFVSNKDGASLGHFMALPLDKVF 133
LDR+L LL SH ++ CSV E+ LY+L PVSK+FV N+DG SLG MAL DKVF
Sbjct: 70 LDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRNEDGVSLGPLMALLQDKVF 129
Query: 134 MESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
++SW LKDA++EGG+PF+RVHG + FEY +PRFN+ ++ AM NH+++ ++ IL +Y+
Sbjct: 130 IDSWSQLKDAIIEGGVPFDRVHGSNTFEYPGKDPRFNQIFNTAMINHTSLVLKEILHNYK 189
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
GFQ + LVDVGGG G+TL++ITSKYP IK +NFDLPHV+Q AP+Y GV+HVG +MFESV
Sbjct: 190 GFQQLSSLVDVGGGLGITLNLITSKYPSIKGINFDLPHVIQHAPAYPGVQHVGRDMFESV 249
Query: 254 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313
P+G AI MKWILH W DHCL++LKNCY A+P +GKVIV+ ++VP++PE ++ R + +
Sbjct: 250 PKGAAIFMKWILHDWSGDHCLKLLKNCYNAIPKDGKVIVVEAVVPDVPEANAYLRSITQV 309
Query: 314 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
D++++ +D GG+ERTK E+ LA AGF GI + C+ +IMEFFK
Sbjct: 310 DMVMLAQDPGGKERTKSEFEALATKAGFSGIRYECFACSYWIMEFFK 356
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 360 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.925 | 0.917 | 0.519 | 3e-94 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.927 | 0.927 | 0.467 | 8.2e-83 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.927 | 0.907 | 0.445 | 6.8e-79 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.922 | 0.871 | 0.448 | 5.7e-75 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.902 | 0.853 | 0.451 | 2.8e-73 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.925 | 0.946 | 0.437 | 8.6e-72 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.916 | 0.884 | 0.431 | 8.9e-70 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.916 | 0.884 | 0.428 | 1e-68 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.922 | 0.878 | 0.421 | 1.3e-68 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.916 | 0.884 | 0.431 | 2.1e-68 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 176/339 (51%), Positives = 242/339 (71%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAP-EIAAQLQAQNVKAPMMLDRMLRLL 86
AMQLA VLPMA ++A++L + EI+AK G +P EIA++L +N +AP+MLDR+LRLL
Sbjct: 23 AMQLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLL 82
Query: 87 VSHRVLECS---VSGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLK 141
S+ VL CS +SG ER+Y L PV KY N+DG S+ + DKV MESW LK
Sbjct: 83 TSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLK 142
Query: 142 DAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201
DA+++GGIPFN+ +GM FEY +PRFN+ ++ M NHSTI M++ILE Y+GF+ + L
Sbjct: 143 DAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSL 202
Query: 202 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILM 261
VDVGGG G TL MI SKYP +K +NFDLPHV++DAPS+ G+EHVGG+MF SVP+GDAI M
Sbjct: 203 VDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFM 262
Query: 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 321
KWI H W D+HC++ LKNCY+++P +GKVI+ I+PE P+ S + ++ +D +++ +
Sbjct: 263 KWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIMLAHN 322
Query: 322 GGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
GG+ERT+KE+ LA A+GFKGI + ++E K
Sbjct: 323 PGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 160/342 (46%), Positives = 225/342 (65%)
Query: 27 HAMQLAMGVVLPMATQAAIQLGVFE-IIAKAGELSAP-EIAAQLQAQ-NVKAPMMLDRML 83
+A+QL +LPM + AI+LG+ E ++A G+L P E+AA+L + N A M+DRML
Sbjct: 19 YALQLVSSSILPMTLKNAIELGLLETLVAAGGKLLTPAEVAAKLPSTANPAAADMVDRML 78
Query: 84 RLLVSHRVLECSVSGGE-----RLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWL 138
RLL S+ V+ C++ G+ R Y PV K+ N+DG S+ + DKV MESW
Sbjct: 79 RLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWY 138
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198
LKDAV++GGIPFN+ +GM FEY +PRFN ++E M NHS I +++LE Y+GF+ +
Sbjct: 139 YLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGL 198
Query: 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDA 258
+VDVGGG G T+ IT+ YP IK +NFDLPHV+ +A + GV HVGG+MF+ VP GDA
Sbjct: 199 GTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGDA 258
Query: 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 318
ILMKWILH W D+HC +LKNCY A+P +GKV+++ I+P PE + A+ +D++++
Sbjct: 259 ILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFHVDMIML 318
Query: 319 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+ GGRER ++E+ LA AGFK I N + +EF K
Sbjct: 319 AHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 156/350 (44%), Positives = 224/350 (64%)
Query: 27 HAMQLAMGVVLPMATQAAIQLGVFEII---------AKAGELSAPEIAAQLQAQ-NVKAP 76
+A+QLA +LPM + AI+LG+ E + KA L+ E+A +L ++ N A
Sbjct: 19 YALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKANPAAA 78
Query: 77 MMLDRMLRLLVSHRVLECSVSGG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDK 131
M+DRMLRLL S+ V+ C + G R YA PV K+ N+DG S+ + DK
Sbjct: 79 DMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDK 138
Query: 132 VFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEH 191
V MESW LKDAV++GGIPFN+ +GM FEY + RFN ++E M NHS I +++L+
Sbjct: 139 VLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDL 198
Query: 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE 251
Y GF +VDVGGG G T++ + S++P I+ +N+DLPHV+ +AP + GVEHVGG+MF
Sbjct: 199 YTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHVGGDMFA 258
Query: 252 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 310
SVP G DAILMKWILH W D+HC R+LKNCY A+P +GKV+V+ ++PE + ++ +
Sbjct: 259 SVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGV 318
Query: 311 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D++++ + GG+ER ++E+ ELA AAGF G N + +EF K
Sbjct: 319 FHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 157/350 (44%), Positives = 222/350 (63%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQL--QAQNVKAPMMLDRM 82
A + V PM +AA++LGV + IA A LS EIA L + N +AP++LDRM
Sbjct: 33 AESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRM 92
Query: 83 LRLLVSHRVLEC----SVSGG-----ERLYALNPVSKYFVSNKDGA-SLGHFMALPLDKV 132
LRLLVSH +L+C S G ER+YA P+ KYF+ + DG+ SL + L +V
Sbjct: 93 LRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQV 152
Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
+++W LKD ++EG F+ H M +FEY S + +F++ +H AM ST+ M+++LE Y
Sbjct: 153 ILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEY 212
Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES 252
GF++V LVDVGGG G L +ITSKYP IK VNFDL V+ AP Y GV+HV G+MF
Sbjct: 213 RGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIE 272
Query: 253 VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312
VP+GDAI MKWILH W D+ C++ILKNC+K++P GKVI++ I P P+ + + T L
Sbjct: 273 VPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVL 332
Query: 313 -LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 360
+D+L++T+ GG+ER+ ++ LA A+GF C+ Y ++EF K
Sbjct: 333 GMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEII-CLSYSYSVIEFHK 381
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 155/343 (45%), Positives = 217/343 (63%)
Query: 35 VVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQ--NVKAPMMLDRMLRLLVSH 89
V PM +AA +LGV + IA AG LS EIA L + N +AP++LDRML LLVSH
Sbjct: 40 VAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKPTNPEAPVLLDRMLSLLVSH 99
Query: 90 RVLECSV--SG--G-----ERLYALNPVSKYFVSNKDGA-SLGHFMALPLDKVFMESWLG 139
+L+C + +G G ER+YA PV KYF+ + DG SL L +VF ++W
Sbjct: 100 SILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTN 159
Query: 140 LKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 199
LKD ++EG FN HGM IFEY + + F E ++ AM ST+ M+++L+ Y GF++V
Sbjct: 160 LKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVN 219
Query: 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAI 259
LVDVGGG G L ++TSKYP IK VNFDL V+ AP Y GVEHV G+MF VP+GDA+
Sbjct: 220 TLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAV 279
Query: 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLLM 318
MKWILH W D+ C++ILKNC+K++P GK+I++ + P+ P+ + T +D+L++
Sbjct: 280 FMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLSSNTVFAMDLLML 339
Query: 319 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IMEFFK 360
T+ GG+ER+ ++ LA A+GF C+ Y ++EF K
Sbjct: 340 TQCSGGKERSLSQFENLAFASGFLRCEII-CLAYSYSVIEFHK 381
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 151/345 (43%), Positives = 216/345 (62%)
Query: 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKA--PMMLDRML 83
S+AM L+ VLPM + AI LG+F+I+A++G SA +I + L + K +++R+L
Sbjct: 8 SYAMILSSSSVLPMVLKTAIDLGLFDILAESGPSSASQIFSLLSNETKKHHDSSLVNRIL 67
Query: 84 RLLVSHRVLECSVSG--GE--RLYALNPVSKYFVSNKDGA-SLGHFMALPLDKVFMESWL 138
R L S+ +L CSVS GE +Y L PV+KYF N++G SL + L DKV + W
Sbjct: 68 RFLASYSILTCSVSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTDMWY 127
Query: 139 GLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198
LKD+V+EGG+PFN HG E + RF E + +M + + +E L++Y GF V
Sbjct: 128 NLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGFDGV 187
Query: 199 ERLVDVGGGFGVTLSMITSKYPQI-KAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGD 257
+ LVDVGGG G LS I SK+ I KA+NFDLP V+ + G+EHV G+MF + P+G+
Sbjct: 188 KSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGDMFTNTPKGE 247
Query: 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL 317
AI MKW+LH WDDDHC++IL NCY+++P NGKVIV++ ++PE P + R ++ +
Sbjct: 248 AIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFELFM 307
Query: 318 MTRDGGGRERTKKEYTELAIAAGFKGIN--FASCVCNLYIMEFFK 360
M + G+ERTKKE+ LA AGF + F S +C ++EF K
Sbjct: 308 MNMNPSGKERTKKEFEILARLAGFSNVQVPFTS-LC-FSVLEFHK 350
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 150/348 (43%), Positives = 225/348 (64%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-----LSAPEIAAQLQA--QNVKAPMMLD 80
A++LA PM +AA++LGVF+ + A LS EIA++L +N +AP++LD
Sbjct: 29 AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNPEAPVLLD 88
Query: 81 RMLRLLVSHRVLEC--SVSG-GERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
RMLRLL S+ +++C ++SG GER+Y P+ ++F+ + +D SL + + D VF+
Sbjct: 89 RMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148
Query: 136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
+W LKD V+EGG F R HG M +F+Y + RF++ +++ F TIA+ ++ LE YE
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYE 205
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
GF+ V+ LVDVGGG G TL ++TSKYP IK +NFDL + APSY GVEHV G+MF V
Sbjct: 206 GFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265
Query: 254 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL- 312
P GDA+++K ILH W D+ C++ILKNC+K++P NGKV+V+ + P+ E +
Sbjct: 266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D+L+ T+ GG+ER++ E+ LA A+GF F + +I+EF K
Sbjct: 326 MDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 149/348 (42%), Positives = 222/348 (63%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGE----LSAPEIAAQLQA--QNVKAPMMLD 80
A++LA PM +A+++LGVF+ + A+A LS EIA++L +N AP++LD
Sbjct: 29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNPGAPVLLD 88
Query: 81 RMLRLLVSHRVLEC---SVSGGERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
RMLRLL S+ +++C SV GER+Y P+ ++F+ N +D SL + + D VF+
Sbjct: 89 RMLRLLASYSMVKCEKVSVGKGERVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFLN 148
Query: 136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
+W LKD V+EGG F R HG M +F+Y + RF++ +++ F TIA+ ++ LE Y+
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
GF+ V LVDVGGG G TL ++TSKYP IK +NFDL + APSY GVEHV G+MF V
Sbjct: 206 GFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265
Query: 254 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL- 312
P GDA+++K ILH W D+ C++ILKNC+K++P NGKV+V+ + P+ E +
Sbjct: 266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D+L+ T+ GG+ER++ E+ LA A+ F F + +I+EF K
Sbjct: 326 MDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFCK 373
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| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 148/351 (42%), Positives = 211/351 (60%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQAQ--NVKAPMMLDR 81
A +LA PM +AA++LGV + I G LS EIA +L + N++AP +LDR
Sbjct: 29 ARRLANAAASPMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLEAPALLDR 88
Query: 82 MLRLLVSHRVLECSV---SGG-----ERLYALNPVSKYFVSNKDGASLGHFMAL---PLD 130
MLR LVSH VL+C G ER+YA PV KY ++ D S G F +L L
Sbjct: 89 MLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVS-GSFASLFMLDLS 147
Query: 131 KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILE 190
VF+++W L+D ++EG F+ HGM +FEY + RF + ++ AM ST+ E++L+
Sbjct: 148 DVFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLK 207
Query: 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF 250
YEGF++V+ LVDVGGG G TL +ITSKYP + +NFDL V+ +A SY GV HV G+MF
Sbjct: 208 FYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVNHVAGDMF 267
Query: 251 ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP-EIPEVSSAARE 309
+P+GDAI MKWILH W D+ C+ ILKNC+K++ NGK+I++ + P E +
Sbjct: 268 IKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICSNI 327
Query: 310 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D+ ++T+ GG+ER E+ LA A+GF V ++E +K
Sbjct: 328 VFGMDMTMLTQCSGGKERDLYEFENLAYASGFSRCAIVCAVYPFSVIEIYK 378
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| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 150/348 (43%), Positives = 224/348 (64%)
Query: 28 AMQLAMGVVLPMATQAAIQLGVFEII-AKAGE----LSAPEIAAQLQA--QNVKAPMMLD 80
A++LA PM +AA++LGVF+ + A+A LS EIA++L +N +AP++LD
Sbjct: 29 AVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPTTPRNPEAPVLLD 88
Query: 81 RMLRLLVSHRVLECS-VS-G-GERLYALNPVSKYFVSN--KDGASLGHFMALPLDKVFME 135
RMLRLL S+ V++C VS G GER+Y P+ ++F+ + +D SL + + D VF+
Sbjct: 89 RMLRLLASYSVVKCGKVSEGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFLN 148
Query: 136 SWLGLKDAVMEGGIPFNRVHG-MHIFEYASGNPRFNETYHEAMFNHSTIAM-ERILEHYE 193
+W LKD V+EGG F R HG M +F+Y + RF++ +++ F TIA+ ++ LE Y+
Sbjct: 149 TWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF---TIAVVKKALEVYQ 205
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
GF+ V LVDVGGG G TL ++ SKYP IK +NFDL + APSY GVEHV G+MF V
Sbjct: 206 GFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265
Query: 254 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL- 312
P GDA+++K ILH W D+ C++ILKNC+K++P +GKV+V+ + P+ E +
Sbjct: 266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDEAENGDINANIAFD 325
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+D+L+ T+ GG+ER++ E+ LA A+GF F + +I+EF K
Sbjct: 326 MDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5208 | 0.925 | 0.9708 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5272 | 0.9472 | 0.9445 | N/A | no |
| Q9FQY8 | COMT1_CAPAN | 2, ., 1, ., 1, ., 6, 8 | 0.5028 | 0.95 | 0.9526 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.5135 | 0.9861 | 0.9726 | N/A | no |
| Q6T1F6 | BMT_AMMMJ | 2, ., 1, ., 1, ., 6, 9 | 0.5072 | 0.9472 | 0.9632 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.5201 | 0.9444 | 0.9289 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.4428 | 0.9277 | 0.9076 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5027 | 0.9861 | 0.9726 | N/A | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.8131 | 1.0 | 0.9890 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.5299 | 0.9444 | 0.9189 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5208 | 0.925 | 0.9708 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.5142 | 0.95 | 0.9369 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.4945 | 0.9861 | 0.9779 | yes | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.5145 | 0.8361 | 0.9616 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5167 | 0.9722 | 0.9695 | N/A | no |
| O04385 | IEMT_CLABR | 2, ., 1, ., 1, ., 1, 4, 6 | 0.5214 | 0.9444 | 0.9239 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.5238 | 0.9694 | 0.9614 | N/A | no |
| Q43239 | COMT1_ZINEL | 2, ., 1, ., 1, ., 6, 8 | 0.5057 | 0.9472 | 0.9632 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.5287 | 0.9444 | 0.9714 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.5258 | 0.9444 | 0.9315 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | COMT4 | SubName- Full=Putative uncharacterized protein; (358 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 360 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-107 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 4e-15 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-12 | |
| PRK00137 | 147 | PRK00137, rplI, 50S ribosomal protein L9; Reviewed | 5e-04 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-107
Identities = 115/239 (48%), Positives = 147/239 (61%), Gaps = 4/239 (1%)
Query: 99 GERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMH 158
G Y L P SK V +D SL + + D +ESW LKDAV EGG PF R GM
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMP 62
Query: 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK 218
FEY +P FN ++ AM HS + M++ILE F + LVDVGGG G + I
Sbjct: 63 FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRA 122
Query: 219 YPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILK 278
YP IK + FDLPHV+ DAPS VE VGG+ FESVPE DAIL+KW+LH W D+ C++ILK
Sbjct: 123 YPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILK 182
Query: 279 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRDGGGRERTKKEYTELA 336
CY+A+P GKVIV+ ++PE P+ E LLD+ L+ GG+ERT+KE+ +L
Sbjct: 183 RCYEALPPGGKVIVVEMVLPEDPD-DDLETEVLLLDLNMLVLN--GGKERTEKEWRKLL 238
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-15
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 39 MATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87
M + AI+LG+ +IIAK G+ LS E+A++L N +AP+MLDR+LRLL
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
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This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 2e-12
Identities = 49/274 (17%), Positives = 108/274 (39%), Gaps = 38/274 (13%)
Query: 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101
+AAI+L +F +A P+ A L A P R+ LL + R + +
Sbjct: 8 KAAIELDLFSHMA-----EGPKDLATLAADTGSVP---PRLEMLLETLRQMRVINLEDGK 59
Query: 102 LYALNPVSKYFVSNKD---GASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRV--HG 156
++L + Y S + + ++GL + G F +
Sbjct: 60 -WSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQ-AVRGQKNFKGQVPYP 116
Query: 157 MHIFEYASGNPRFNETYHEA---MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLS 213
E + + E H + + ++ V++++DVGGG G +
Sbjct: 117 PVTRE----DNLYFEEIHRSNAKFAIQLLLEEAKL-------DGVKKMIDVGGGIGDISA 165
Query: 214 MITSKYPQIKAVNFDLPH---VVQDAPSYAG----VEHVGGNMF-ESVPEGDAILMKWIL 265
+ +P++ + +LP +V + + G + + +++ ES PE DA+L IL
Sbjct: 166 AMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 225
Query: 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299
+ ++ + K + A+ G++++++ ++ +
Sbjct: 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259
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Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 5e-04
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 17/73 (23%)
Query: 9 KLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-------LSA 61
+L ++ E E + E + A LA ++ I AKAGE ++
Sbjct: 46 QLEARRAELEAKAAEELAEAEALA----------EKLEGLTVTIKAKAGEDGKLFGSVTT 95
Query: 62 PEIAAQLQAQNVK 74
+IA L+ Q ++
Sbjct: 96 KDIAEALKKQGIE 108
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Length = 147 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.8 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.79 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.77 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.75 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.72 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.67 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.67 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.66 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.65 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.64 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.64 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.63 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.63 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.57 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.55 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.54 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.54 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.54 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.53 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.5 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.5 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.48 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.46 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.46 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.45 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.42 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.42 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.42 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.4 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.38 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.38 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.37 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.36 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.36 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.36 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.3 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.3 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.29 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.28 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.27 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.27 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.26 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.25 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.25 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.24 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.21 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.19 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.18 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.18 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.18 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.17 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.13 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.1 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.1 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.09 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.09 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.09 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.08 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.07 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.07 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.06 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.06 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.04 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.02 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.01 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.0 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.0 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.99 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.99 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.98 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.97 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.94 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.93 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.92 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.91 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.9 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.9 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.84 | |
| PLN02366 | 308 | spermidine synthase | 98.84 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.84 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.8 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.78 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.77 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.76 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.76 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.76 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.76 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.75 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.72 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.71 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.69 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.66 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.66 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.65 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.6 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.57 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.56 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.55 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.55 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.53 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.48 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.46 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.44 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.39 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.36 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.34 | |
| PLN02823 | 336 | spermine synthase | 98.33 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.33 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.33 | |
| PLN02476 | 278 | O-methyltransferase | 98.32 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.32 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.3 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.28 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.28 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.28 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.26 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.23 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.22 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.22 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.18 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.18 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.18 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.16 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.13 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.12 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.1 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.09 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.08 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.08 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.08 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.07 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.04 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.98 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.92 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.9 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.72 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.7 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.69 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.69 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.69 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.68 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.67 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.66 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.66 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.64 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.62 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.59 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.59 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.58 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.57 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.42 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.4 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.39 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.36 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.35 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.34 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.34 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.28 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.24 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.24 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 97.21 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.2 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.16 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.14 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.12 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.1 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.09 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.08 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.06 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.06 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.05 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.02 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 97.01 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.97 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.88 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.85 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.83 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.82 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.82 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.81 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.81 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.79 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.74 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.69 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.67 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.6 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.56 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.46 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.4 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 96.37 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.37 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.34 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.33 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.3 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.29 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.28 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.27 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 96.25 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.24 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.24 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 96.16 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.13 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.13 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 96.13 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.12 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.12 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.07 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.04 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 96.0 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.98 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.96 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.95 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.93 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 95.91 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 95.84 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.83 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.81 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.81 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 95.76 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.76 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.76 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.7 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.67 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 95.66 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.66 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 95.65 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.62 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.6 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.58 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.46 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 95.35 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.3 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.27 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.25 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 95.25 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.23 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 95.22 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.21 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.19 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 95.11 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 95.08 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.03 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 95.01 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.95 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 94.88 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.83 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 94.78 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 94.74 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.67 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 94.65 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 94.64 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.63 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 94.6 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.58 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.58 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 94.5 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 94.46 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 94.45 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.26 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 94.24 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 94.24 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.23 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 94.22 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 94.09 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 94.02 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 93.95 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.85 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.82 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 93.72 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 93.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.51 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 93.48 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 93.25 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 93.13 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 93.06 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.05 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 93.05 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.84 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 92.78 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 92.78 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.78 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 92.71 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.58 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.56 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 92.53 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 92.52 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 92.49 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 92.46 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 92.3 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 92.29 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 92.28 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 92.17 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.07 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 91.98 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 91.95 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.82 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 91.8 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.78 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 91.53 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.42 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 91.4 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.27 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 91.12 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 91.09 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 90.65 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 90.61 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 90.51 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 90.31 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 89.8 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.59 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.43 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 89.4 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 89.36 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 89.33 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 89.16 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 89.14 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 88.97 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.51 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 88.08 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.05 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 88.01 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 87.49 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 86.94 | |
| PRK05638 | 442 | threonine synthase; Validated | 86.71 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 86.44 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 86.42 | |
| TIGR02787 | 251 | codY_Gpos GTP-sensing transcriptional pleiotropic | 86.39 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 86.23 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 86.16 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.03 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 85.72 | |
| PF08221 | 62 | HTH_9: RNA polymerase III subunit RPC82 helix-turn | 85.62 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 85.54 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 85.08 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 85.01 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 84.2 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 84.13 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 84.11 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 83.94 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 83.93 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 83.86 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 83.64 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 83.42 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 83.4 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 83.38 | |
| PRK10906 | 252 | DNA-binding transcriptional repressor GlpR; Provis | 83.33 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 82.98 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 82.98 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 82.86 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 82.51 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 82.26 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 81.69 | |
| PRK11886 | 319 | bifunctional biotin--[acetyl-CoA-carboxylase] synt | 81.66 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 81.63 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 81.61 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 81.45 | |
| smart00531 | 147 | TFIIE Transcription initiation factor IIE. | 81.38 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 81.29 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 81.08 | |
| COG1675 | 176 | TFA1 Transcription initiation factor IIE, alpha su | 81.07 | |
| PF05732 | 165 | RepL: Firmicute plasmid replication protein (RepL) | 81.06 | |
| PF02295 | 66 | z-alpha: Adenosine deaminase z-alpha domain; Inter | 80.95 | |
| PRK10434 | 256 | srlR DNA-bindng transcriptional repressor SrlR; Pr | 80.9 | |
| PRK10411 | 240 | DNA-binding transcriptional activator FucR; Provis | 80.14 | |
| COG3413 | 215 | Predicted DNA binding protein [General function pr | 80.11 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=320.70 Aligned_cols=337 Identities=46% Similarity=0.799 Sum_probs=298.3
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCc-CCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~-~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
+....-.++++++++..++++++|++||+||.|++.++ +.+||..+.. ++|.++..++|+||.|+++++++....+.
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~ 80 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGG 80 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecc
Confidence 34556678999999999999999999999999999543 8888888774 45568899999999999999999864332
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhh
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFN 179 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 179 (360)
. .|++++.++.++...+..++..++...+.+..++.|.++.++++.+..++...+|...++|...+......+++.|..
T Consensus 81 ~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~ 159 (342)
T KOG3178|consen 81 E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSF 159 (342)
T ss_pred e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 3 899999999998777666888888887788899999999999999988999999977899988888778899999999
Q ss_pred cchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-CCcEEEecCCCCCCCCCcE
Q 018145 180 HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-AGVEHVGGNMFESVPEGDA 258 (360)
Q Consensus 180 ~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~~~~~~D~ 258 (360)
.+......+++.+.+++.....+|+|+|.|..+..++..||+++++.+|+|.+++.+... ++|+.+.+|++++.|++|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 988888888888887888899999999999999999999999999999999999999888 8999999999999999999
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC-CCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE-IPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
|++.++||||+|+++.++|++++++|+|||++++.|.+.++ .............+++.|+..+.+|+.|+.+|+..++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 99999999999999999999999999999999999998875 32222223345567888888777899999999999999
Q ss_pred HcCCceeeEEecCCceeEEEEeC
Q 018145 338 AAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++||.+..+...+...++|+++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999987
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=294.63 Aligned_cols=289 Identities=19% Similarity=0.338 Sum_probs=212.3
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCC
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~ 116 (360)
...+|++|++|||||.|.+ ||.|+++||+++|+ +++.+++||++|+++|+|++ ++++|++|+.++.++.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~-gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~----~~~~y~~t~~~~~~l~~~ 73 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----EDGKWSLTEFADYMFSPT 73 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc-CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEe----cCCcEecchhHHhhccCC
Confidence 4689999999999999987 69999999999999 99999999999999999996 568999999999888766
Q ss_pred CCCC---hHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHh-hcchhhHHHHHhhc
Q 018145 117 DGAS---LGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMF-NHSTIAMERILEHY 192 (360)
Q Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~i~~~~ 192 (360)
+..+ +..+..+. .......|.++.++++++ ++|...++ +....++ ...|...|. .......+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~-~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 74 PKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQ-KNFKGQVP-----YPPVTRE-DNLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred ccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCC-cccccccC-----CCCCCHH-HHHhHHHHHHhcchhHHHHHHHHc
Confidence 5321 11222221 111224578899998843 34432221 1111112 223444443 33333445566666
Q ss_pred ccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 193 ~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
+ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +||+++.+|+++ ++|.+|+|+++++
T Consensus 146 ~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 146 K-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred C-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 6 777899999999999999999999999999999999888877542 579999999997 6676799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCCCccCCHHHHHHHHHHcCCc
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+|+|+++.+.++|++++++|||||+|+|.|.+.++.. .+... ...+..+... ..-...++.++|.++|+++||+
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~ 300 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFD---YLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 300 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-Cchhh---HHHHHHHHcccccccccCCCHHHHHHHHHHcCCC
Confidence 9999988889999999999999999999998876532 22111 1122111000 0011234579999999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
.++++
T Consensus 301 ~v~~~ 305 (306)
T TIGR02716 301 DVTMV 305 (306)
T ss_pred eeEec
Confidence 88765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=285.14 Aligned_cols=238 Identities=29% Similarity=0.623 Sum_probs=206.4
Q ss_pred CCCceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHH
Q 018145 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAM 177 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 177 (360)
+++++|++|+.|+.|+.+++..++..++.+...+.++..|.+|.+++++|.+++...+|.++|+++.++++....|+.+|
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 36789999999999999988667777777766788999999999999999999998899889999999999999999999
Q ss_pred hhcchhhH-HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCC
Q 018145 178 FNHSTIAM-ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 178 ~~~~~~~~-~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~ 256 (360)
...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 98888777 67777777 88889999999999999999999999999999999999998888889999999999988889
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCC--cEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGN--GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkpg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|+..+ +|+.||.+||++
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ 238 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEA 238 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHH
Confidence 9999999999999999999999999999999 9999999999876555433222357899999887 699999999999
Q ss_pred HHH
Q 018145 335 LAI 337 (360)
Q Consensus 335 ll~ 337 (360)
||+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=150.17 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=119.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||||.++..+++..+..+++++|+ +.|++.++++ ..|+|+.+|+.+ |+|+. |+|.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34689999999999999999999999999999999 8999999875 228999999999 99976 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH-Hhhhc----C------------CCccC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL-LMTRD----G------------GGRER 327 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~------------~~~~~ 327 (360)
|++++ +..+.|++++|+|||||++++.|...+..+... .....+.+. .+... . .-..+
T Consensus 129 lrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 99998 457899999999999999999999887643221 111111111 11111 0 11234
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCce
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNL 353 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~ 353 (360)
+.+++.++++++||+.+.......+.
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeee
Confidence 78899999999999998865555443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=157.08 Aligned_cols=156 Identities=23% Similarity=0.379 Sum_probs=81.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
..++.+|||+|||||.++..+++.. |+.+++++|+ +.|++.++++ .+|+++.+|+.+ ++++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999885 6789999999 9999998753 479999999999 88865 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh----hcCC-----------CccCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT----RDGG-----------GRERT 328 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~~~t 328 (360)
.+|++++ ..+.|++++|+|||||+++|+|...|..+. ....+...+...... .... ....+
T Consensus 125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~--~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPL--LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHH--HHHHHHH--------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCch--hhceeeeeecccccccccccccccccccccccccccccc
Confidence 9999985 467899999999999999999998875311 101111111100000 0000 12237
Q ss_pred HHHHHHHHHHcCCceeeEEecCCcee
Q 018145 329 KKEYTELAIAAGFKGINFASCVCNLY 354 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
.+++.++++++||+.++..+...+..
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~ 226 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIV 226 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 78999999999999999887765543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=149.74 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=115.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCC-CCCCC--cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~~--D~i~ 260 (360)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|+++ .+++++.+|+.+ ++++. |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 6789999999 8899887532 378999999988 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH---hhhcCC-----------Ccc
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL---MTRDGG-----------GRE 326 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~~ 326 (360)
++.++|++++ ..++|++++++|||||++++.|...++....... ......... ...... ...
T Consensus 151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999874 4679999999999999999999876542110000 000000000 000000 234
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCcee
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCNLY 354 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 354 (360)
++.+++.++++++||+.++......+..
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 6899999999999999999888765544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-19 Score=154.77 Aligned_cols=149 Identities=13% Similarity=0.205 Sum_probs=114.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.|+++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 7899999999 8899887643 368999999988 6666699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh-----------------hcCCCccC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-----------------RDGGGRER 327 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 327 (360)
+|++++++...+|++++++|||||++++.|++.+.+.... . ....+.+.. ....-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999988888999999999999999999998775532211 1 011111000 00012346
Q ss_pred CHHHHHHHHHHcCCceeeEEec
Q 018145 328 TKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+.+++.++++++||+.+++...
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHH
Confidence 8999999999999998776543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.33 Aligned_cols=155 Identities=18% Similarity=0.303 Sum_probs=119.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..+++.+. +.++.+|||||||+|..+..+++.+ ..+++++|+ +.+++.++++ ++++++.+|+.+ +++.. |
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 45666665 6788999999999999999988765 678999998 7888777643 579999999987 66654 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..+++|++.++...+|++++++|||||+|++.++....... ... ..... .. .......+.+++.++|+
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~---~~~~~-~~--~~~~~~~~~~~~~~~l~ 191 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDE---EFKAY-IK--KRKYTLIPIQEYGDLIK 191 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHH---HHHHH-HH--hcCCCCCCHHHHHHHHH
Confidence 999999998888767889999999999999999999987644211 111 11111 11 11233568999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+.+++.+..
T Consensus 192 ~aGF~~v~~~d~~ 204 (263)
T PTZ00098 192 SCNFQNVVAKDIS 204 (263)
T ss_pred HCCCCeeeEEeCc
Confidence 9999999988764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=143.19 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=122.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..++ .+++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.++++ ++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4445555 5667899999999999999999886 6789999999 8888776542 578999999987 55543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hhhHHHhh---------------
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDVLLMT--------------- 319 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~--------------- 319 (360)
|+|++..++|++++. .++|+++.+.|+|||++++.+...++.. ....... .+...+..
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998754 5799999999999999999987654321 1110000 00000000
Q ss_pred hcCCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 320 RDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 320 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
.......++.+++.++|+++||+.+++.... +...++..+|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001234578999999999999999998887 5566777776
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=137.05 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcch-hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC------CeEEEecc-hhHHHhCCCC--
Q 018145 170 NETYHEAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ------IKAVNFDL-PHVVQDAPSY-- 239 (360)
Q Consensus 170 ~~~~~~~m~~~~~-~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~-- 239 (360)
....++.|+--.. ..-+-.+..+. ..+..++||++||||..+..+++..++ .+++++|+ |+++..++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 3445555543222 22223344444 455699999999999999999999877 78999999 9999887653
Q ss_pred -------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhh
Q 018145 240 -------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 309 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~ 309 (360)
.++.++++|+.+ |+|+. |.|++.+-+.+++ ++.+.|++++|+|||||++.+.|+---+. +...++
T Consensus 152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~---~~l~~f 226 (296)
T KOG1540|consen 152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVEN---EPLKWF 226 (296)
T ss_pred hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccccc---HHHHHH
Confidence 359999999999 99976 9999999999999 45789999999999999999999754331 111222
Q ss_pred hhhhhHHH-----------------hhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 310 TSLLDVLL-----------------MTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 310 ~~~~~~~~-----------------~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+.+.. +..+ =-+.++.+++..+.+++||+.+.
T Consensus 227 y~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 21111111 1111 11345789999999999999887
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=147.23 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhh--CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~v 264 (360)
.++.+|||||||+|..+..+++. .|+.+++++|. +.+++.|+++ .+++++.+|+.+ +.+..|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999998884 68999999999 8999988653 379999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh-------------hhcCCCccCCHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-------------TRDGGGRERTKKE 331 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~t~~e 331 (360)
+|++++++...++++++++|||||.|++.|.+.......... ....+.++... ....--...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999776543221100 00111111000 0000112248899
Q ss_pred HHHHHHHcCCceeeEE
Q 018145 332 YTELAIAAGFKGINFA 347 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~ 347 (360)
..++|+++||+.++..
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=143.55 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=110.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCC--CcEEEec
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPE--GDAILMK 262 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~--~D~i~~~ 262 (360)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+..+. .|+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 45666666 56779999999999999999999999999999999 899998875 4689999998763232 3999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhh---hhhhHH-HhhhcCCCccCCHHHHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET---SLLDVL-LMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
.++||+++. .+++++++++|||||++++..+.....+......... .+.... ......+....+.+++.++|++
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999998754 6799999999999999998753211110000000000 010000 0000112234689999999999
Q ss_pred cCCceee
Q 018145 339 AGFKGIN 345 (360)
Q Consensus 339 aGf~~~~ 345 (360)
+||++..
T Consensus 175 aGf~v~~ 181 (255)
T PRK14103 175 AGCKVDA 181 (255)
T ss_pred CCCeEEE
Confidence 9998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=145.50 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=110.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 678999998 7888766542 479999999988 66654 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-Cc-hhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VS-SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+||+++ ..+++++++++|||||+|++.+........ .. ........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 999985 468999999999999999999876532211 10 00011111111111111 11234889999999999999
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.+++.+..
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=131.47 Aligned_cols=173 Identities=14% Similarity=0.190 Sum_probs=127.4
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCC--CcEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPE--GDAI 259 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~--~D~i 259 (360)
.+..++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+++ +.++|..+|+.+-.|+ .|++
T Consensus 18 Pa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 18 PARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred cHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 4567888888 78889999999999999999999999999999998 9999998765 8899999999885553 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc---CCCccCCHHHHHHHH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD---GGGRERTKKEYTELA 336 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll 336 (360)
+.+-+||+++|. .++|.++...|.|||.|.+.-+-.-..+.-..........-+...... ......+...|-++|
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 999999999865 689999999999999999876543222211110000000001111000 123455889999999
Q ss_pred HHcCCceeeEE------ecCCceeEEEEeC
Q 018145 337 IAAGFKGINFA------SCVCNLYIMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~------~~~~~~~vi~~~k 360 (360)
...+-+ +++. ++++...|+|++|
T Consensus 175 a~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 175 APLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred Ccccce-eeeeeeeccccCCCccchhhhee
Confidence 998744 4443 4457778888876
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.2e-16 Score=140.03 Aligned_cols=140 Identities=24% Similarity=0.372 Sum_probs=110.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
.+..+|||||||+|.++..+++.++..+++++|. +.+++.++++ .+++++.+|+.+ +++.+ |+|+++.++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3467999999999999999999988889999998 8888887654 578999999987 66543 999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++. ..+|++++++|||||+++++++..+.. +... ...+..+ ..++.+++.++|+++||+.+++..
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 865 468999999999999999987654321 1110 0111111 135789999999999999999887
Q ss_pred cC
Q 018145 349 CV 350 (360)
Q Consensus 349 ~~ 350 (360)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 65
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-15 Score=131.54 Aligned_cols=168 Identities=15% Similarity=0.229 Sum_probs=119.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 3444444 44568999999999999999999998 789999998 7777766543 468999999987 44433
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh----hhHHHhhhcCC-------
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL----LDVLLMTRDGG------- 323 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------- 323 (360)
|+|++++++|++++ ...+|+++.++|+|||++++.+...+.... ........ ......... +
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLIS-KNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHc-CCcHHHHH
Confidence 99999999999874 568899999999999999999987654211 00000000 000000000 1
Q ss_pred -----CccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 324 -----GRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 324 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
...++.++|.++|+++||+.+++.... +-..++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998876 4456777665
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=147.51 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=116.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-- 256 (360)
+.+++.+. .+++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++. .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45666665 5677899999999999999988876 779999999 7888877542 478999999988 56643
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..+++|+++. .++|++++++|||||++++.++......... . ...... ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~~~---~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEYIK---QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHHHH---hcCCCCCCHHHHHHHH
Confidence 999999999998854 6899999999999999999998764321111 1 111111 1244577899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+++.+....
T Consensus 403 ~~aGF~~i~~~d~~ 416 (475)
T PLN02336 403 KDAGFDDVIAEDRT 416 (475)
T ss_pred HHCCCeeeeeecch
Confidence 99999998776543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=129.58 Aligned_cols=169 Identities=16% Similarity=0.199 Sum_probs=119.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
.++..+. ..++.+|||+|||+|..+..+++.+|. .+++++|. +.+++.+++. .++++..+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444443 446789999999999999999999987 78999998 7777766542 468999999987 54433 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh---hcC-C----------
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT---RDG-G---------- 323 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---------- 323 (360)
+|+++.++|+.++ ...+|+++++.|+|||++++.+...+.... ............+.. ... .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 9999999998774 568999999999999999999876543211 100000000000000 000 0
Q ss_pred -CccCCHHHHHHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 324 -GRERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 324 -~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
....+..+|.++|+++||+.+++.+...+ ..+++++|
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347889999999999999999988866 44666654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-16 Score=134.70 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=128.3
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++.+. ++++.+|||||||.|.++...+++| +++++++++ +++.+.++++ .+|++.-.|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 356677777 8999999999999999999999999 999999998 7777776652 47899999887644447
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|-|++..+++|+..+.-..+++++++.|+|||++++.....+..+.. ...++...-.++||..++..++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999877653211 12223333345799999999999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||.+.+.....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988876554
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=136.83 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=111.9
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 346777776 8899999999999999999999998 789999988 666665532 157999999987632345
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|.|++..++.|++.+....+++++++.|||||++++...+....... .......++.....+++|..++.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 99999999999998888999999999999999999988777542110 000001133333335788999999999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++..+...+
T Consensus 206 ~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 206 EDAGLEVEDVENLG 219 (273)
T ss_dssp HHTT-EEEEEEE-H
T ss_pred hcCCEEEEEEEEcC
Confidence 99999998887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=127.28 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=106.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~- 256 (360)
+.+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 445689999999999999999986 468899998 8888876542 458888899877 45544
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++|++++++...++++++++|||||++++++....++.... .......+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~----------------~~~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC----------------CCCCCccCHHHHHHHh
Confidence 999999999999888889999999999999999888776543321100 0011234788899998
Q ss_pred HHcCCceeeEE
Q 018145 337 IAAGFKGINFA 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
+ ||+++...
T Consensus 161 ~--~~~~~~~~ 169 (197)
T PRK11207 161 E--GWEMVKYN 169 (197)
T ss_pred C--CCeEEEee
Confidence 7 89887764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=134.13 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=107.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-------CCCCCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PSYAGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~d~~~-~~~~~- 256 (360)
.++..+. ..++.+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+..+++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4455444 345689999999999999999887654 7899997 5555432 123578888888776 33333
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++||+++. ..+|++++++|||||.|++.+...+......... ....-.|.. .-..++.+++..++
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p---~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP---KDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc---hHHHHhccc---cccCCCHHHHHHHH
Confidence 999999999998754 6789999999999999999887664432111000 000001110 11245899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+.+++....
T Consensus 262 ~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 262 EKVGFENFRILDVL 275 (314)
T ss_pred HHCCCeEEEEEecc
Confidence 99999999987543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-15 Score=136.59 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC-------CCCCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~~~~- 256 (360)
.+...++ ...+.+|||||||+|.++..+++..+. .++++|. +.++..++ ...+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3344444 234589999999999999999998765 5899997 54444221 12479999999887 55444
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++..++||..+ ...+|+++++.|+|||++++.+.+.+.+....... ......+. ..-..++.+++.+++
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~---~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMR---NVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCc---cceeCCCHHHHHHHH
Confidence 99999999999874 46799999999999999998776665432211000 00000010 011246899999999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||+.+++....
T Consensus 263 ~~aGF~~i~~~~~~ 276 (322)
T PRK15068 263 ERAGFKDVRIVDVS 276 (322)
T ss_pred HHcCCceEEEEeCC
Confidence 99999999997654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=125.14 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCC-C-cEEEeccccccCCh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDD 270 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~-~-D~i~~~~vlh~~~~ 270 (360)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999966644 8999998 777776 223333333223 2333 3 99999999999984
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHHHHHHHcCCceee
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
...+|+++++.|||||++++.++..... ... ....+.+... ......++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPR---SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHH---HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhh---HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6789999999999999999999876421 000 0111111100 0244667999999999999999875
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=130.91 Aligned_cols=137 Identities=14% Similarity=0.287 Sum_probs=107.2
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEeccccccC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCW 268 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~ 268 (360)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++++ +++++...|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 7777766542 568999999876 45444 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++ ...+|++++++|||||++++.+...+..... ... .......+..+|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAI--------EHE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccc--------ccc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 75 4689999999999999999998754321000 000 0012245789999999999999999887
Q ss_pred cCC
Q 018145 349 CVC 351 (360)
Q Consensus 349 ~~~ 351 (360)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-16 Score=119.49 Aligned_cols=98 Identities=21% Similarity=0.367 Sum_probs=82.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCC-CC-CCCC-CcEEEecc-c
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM-FE-SVPE-GDAILMKW-I 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~-~~-~~~~-~D~i~~~~-v 264 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++ ++|+++.+|+ .. +.++ .|+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999999 8888877542 6899999999 33 3333 39999999 6
Q ss_pred cccCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDD-DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~-~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+|++.. ++..++|+++++.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665543 577899999999999999999875
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=131.18 Aligned_cols=145 Identities=19% Similarity=0.316 Sum_probs=109.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
.+++.+|||||||+|..+..+++.. +..+++++|. +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5667899999999999888777764 5678999998 8888887653 578999999987 66543 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
++|++++ ..+++++++++|||||+|++.+....... + .. ...+..+.... .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EE--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HH--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9998774 35799999999999999999997754321 1 01 11111121111 234568899999999999999
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=130.15 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=108.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCC-CC-cEEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVP-EG-DAIL 260 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~-~~-D~i~ 260 (360)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446677666 66778999999999999999999999999999999 8899988765 679999999876323 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh---hhHHHhhhcC---CCccCCHHHHHH
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL---LDVLLMTRDG---GGRERTKKEYTE 334 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~t~~e~~~ 334 (360)
++.++|++++. ..+|++++++|||||++++..+. ....+........ ..+....... .....+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMPD---NLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEECCC---CCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998754 67999999999999999986321 1111100000000 0000000000 123457788999
Q ss_pred HHHHcCCce
Q 018145 335 LAIAAGFKG 343 (360)
Q Consensus 335 ll~~aGf~~ 343 (360)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=137.58 Aligned_cols=144 Identities=15% Similarity=0.050 Sum_probs=104.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC--CcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE--GDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~--~D~i~~~~vl 265 (360)
++.+|||||||+|.++..+++. +.+++++|. +.+++.|+.+ .+++++.+|+.+ +.+. .|+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4579999999999999988763 678999998 8888887642 368999999876 4443 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC----CccCCHHHHHHHHHHcCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG----GRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 341 (360)
||+++. ..+|+.++++|||||.+++.+...... .+................+ .+.++.+++.++++++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999865 579999999999999999987643210 0000000001111111111 235689999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+++++..
T Consensus 283 ~i~~~~G 289 (322)
T PLN02396 283 DVKEMAG 289 (322)
T ss_pred eEEEEee
Confidence 9988853
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=143.02 Aligned_cols=141 Identities=19% Similarity=0.345 Sum_probs=107.7
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchh--hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTI--AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ 234 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 234 (360)
.+|+++..+++....|...|...... ........++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 57888888887777777655432221 1111122223 45678999999999999999999999999999999 77888
Q ss_pred hCCCC-----CCcEEEecCCCC-C--CCCC--cEEEeccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 235 DAPSY-----AGVEHVGGNMFE-S--VPEG--DAILMKWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 235 ~a~~~-----~~v~~~~~d~~~-~--~~~~--D~i~~~~vlh~~-----------~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.++++ .+++++.+|+.+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77643 357888899876 3 4443 999999999976 2457789999999999999999999
Q ss_pred eeecCC
Q 018145 294 NSIVPE 299 (360)
Q Consensus 294 e~~~~~ 299 (360)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 976654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=126.23 Aligned_cols=155 Identities=22% Similarity=0.283 Sum_probs=110.7
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--c
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D 257 (360)
+...+. ..++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. .++++..+|+.+ +++.+ |
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence 444454 6677899999999999999999988 7889999998 7777766543 568999999877 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-CchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-VSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
+|++.++++++++ ...++++++++|||||++++.++....... ............... .......+..+|.+++
T Consensus 90 ~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 90 AVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS---DHFADPWLGRRLPGLF 164 (241)
T ss_pred EEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 9999999999885 467899999999999999998864322100 000001111111111 1122334567899999
Q ss_pred HHcCCceeeEEe
Q 018145 337 IAAGFKGINFAS 348 (360)
Q Consensus 337 ~~aGf~~~~~~~ 348 (360)
+++||+.+++..
T Consensus 165 ~~aGf~~~~~~~ 176 (241)
T PRK08317 165 REAGLTDIEVEP 176 (241)
T ss_pred HHcCCCceeEEE
Confidence 999999876643
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=123.51 Aligned_cols=137 Identities=20% Similarity=0.331 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCcchHHHHHH-hhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~~~ 263 (360)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++. ++++|..+|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5678999999999 8999988762 579999999999 4 3333 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCCCccCCHHHHHHHHHHcC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aG 340 (360)
++|++++. ..+|+++.+.|+|||.+++.+........ ........+.+..+ ...+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELP----EQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHH----HHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHH----HHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998854 57899999999999999999987322100 01111111111111 11111 6788999999998
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=128.66 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=106.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--CCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~~~~- 255 (360)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.|+++ ++++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 45689999999999999999987 467889998 8898887653 468999999866 2333
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhh-hhHHH--hhhcCCCccCCHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSL-LDVLL--MTRDGGGRERTKK 330 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~~~~~t~~ 330 (360)
. |+|++..++|+++++ ..+|++++++|||||++++..+......-... ...+... ..+.. ..........+.+
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 189 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPE 189 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHH
Confidence 3 999999999998754 57899999999999999987654321000000 0000000 00000 0000011235789
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
++.++++++||+++...-..
T Consensus 190 ~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 190 QVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHCCCeEeeeeeEE
Confidence 99999999999998766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=120.31 Aligned_cols=140 Identities=10% Similarity=0.101 Sum_probs=102.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.+++.++ ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.+++. -.+.+...|+.. +.+.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 445689999999999999999986 468899998 8888866432 136777778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|+++.++|++++++...++++++++|||||++++++......... . . +.....+.+++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~-~-------~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC-H-------M--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC-C-------C--------CcCccCCHHHHHHHhC-
Confidence 999999999988888899999999999999988877654321000 0 0 0122457889999886
Q ss_pred cCCceeeEE
Q 018145 339 AGFKGINFA 347 (360)
Q Consensus 339 aGf~~~~~~ 347 (360)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58877765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-15 Score=109.94 Aligned_cols=88 Identities=18% Similarity=0.419 Sum_probs=76.0
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHH
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCL 274 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~ 274 (360)
||||||+|..+..+++. +..+++++|. +.+++.+++. .++++..+|+.+ ++++. |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999998 7778877653 567799999998 77755 999999999998 4668
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 018145 275 RILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~lli 292 (360)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=119.92 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=101.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC-C-cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-G-DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~-~-D~i~~~~v 264 (360)
.++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999998888764 46779999999 8999988764 456776665443 3332 3 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc------CC-----CccCCHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD------GG-----GRERTKKEYT 333 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~t~~e~~ 333 (360)
+||+++++...+|++++++++ |.+++.+...+.. .+ . .+........ .. .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~----~~---~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL----AY---A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH----HH---H-HHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999998888899999999998 6677766654321 00 0 0111111000 01 1346899999
Q ss_pred HHHHHcCCceeeEEec
Q 018145 334 ELAIAAGFKGINFASC 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998777654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=121.68 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=105.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i 259 (360)
...+++.++ ..++.+|||||||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.+ ++++. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 345566665 345689999999999999888764 468899998 8999988765 346789999987 66553 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
+++.++|+.++ ...+|++++++|+|||++++..+..... ......+.... . ........+.++|.+++...
T Consensus 108 ~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-----~el~~~~~~~~-~-~~~~~~~~~~~~l~~~l~~~ 178 (251)
T PRK10258 108 WSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSL-----PELHQAWQAVD-E-RPHANRFLPPDAIEQALNGW 178 (251)
T ss_pred EECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCch-----HHHHHHHHHhc-c-CCccccCCCHHHHHHHHHhC
Confidence 99999997664 4689999999999999999988654321 01001111000 0 00123456889999999988
Q ss_pred CCce
Q 018145 340 GFKG 343 (360)
Q Consensus 340 Gf~~ 343 (360)
|+..
T Consensus 179 ~~~~ 182 (251)
T PRK10258 179 RYQH 182 (251)
T ss_pred Ccee
Confidence 8763
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=112.53 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=115.3
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hh----HHHhCCC--CCCc-EEEecCCCC---CCC-------CC-cEEE
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH----VVQDAPS--YAGV-EHVGGNMFE---SVP-------EG-DAIL 260 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~--~~~v-~~~~~d~~~---~~~-------~~-D~i~ 260 (360)
+|||||+|||..+..+++.+|+++.---|. +. +.+.... .+++ .=+..|+.. +.+ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998855554 22 2221111 1221 122334433 111 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 340 (360)
+.+++|..+-..+..+++.+.++|+|||.|++.-++..+..-.+ .....+|-......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99999999988999999999999999999999998876542111 112234443333234567889999999999999
Q ss_pred CceeeEEecCCceeEEEEeC
Q 018145 341 FKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 341 f~~~~~~~~~~~~~vi~~~k 360 (360)
++.++.+.++..+-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999888988886
|
The function of this family is unknown. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=120.45 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++++..+|+.+.....|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999876 457888888 8888877653 3789999998773334499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh--hcCCCccCCHHHHHHHHHHcCCceee
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT--RDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+++++...+++++.+.+++++.+.+.. .. .... ....+.-.... ....-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KT---AWLA-FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---hHHH-HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 988788899999999998765544321 11 0000 00011100000 00012335889999999999999998
Q ss_pred EEecCC
Q 018145 346 FASCVC 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 876654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=121.31 Aligned_cols=136 Identities=17% Similarity=0.248 Sum_probs=104.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC--cEEEeccccccCCh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~ 270 (360)
.+.+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999998 7777766543 478999999987 54543 99999999998764
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
...+|++++++|+|||++++.++..... . .+..... ..+....+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~------~---~~~~~~~---~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTL------H---ELRQSFG---QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCH------H---HHHHHHH---HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4679999999999999999987644321 0 0111111 0134556889999999998 8876654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-13 Score=118.16 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=105.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
++.+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ ++++. |+|++..++|++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d-- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN-- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence 36799999999999999999887 578999999 9999998764 3567889887 77654 99999999999875
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH---HhhhcCCC-------------ccCCHHHHHHHH
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL---LMTRDGGG-------------RERTKKEYTELA 336 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------~~~t~~e~~~ll 336 (360)
..+.|++++|+||| .+.++|...++.... ........... +.... ++ ...+.+++.+++
T Consensus 126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~--~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIK--RKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred HHHHHHHHHHHhcC--ceEEEEeCCCCcHHH--HHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46799999999999 344666654432100 00111111111 11111 11 224789999999
Q ss_pred HHcCCceeeEEecCCcee-EEEEeC
Q 018145 337 IAAGFKGINFASCVCNLY-IMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~-vi~~~k 360 (360)
+++| ..++......+.. +...+|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 6677777765543 555544
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=122.65 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=83.2
Q ss_pred CCcceEEEEcCCcch----HHHHHHhhCC-----CCeEEEecc-hhHHHhCCCC--------------------------
Q 018145 196 QNVERLVDVGGGFGV----TLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY-------------------------- 239 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 239 (360)
.++.+|+|+|||+|. ++..+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 5666666654 578999999 8999988752
Q ss_pred -------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 240 -------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+|+|..+|+.+ +.+.+ |+|++.++||+++++...+++++++++|+|||+|++...
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 44333 999999999999988888999999999999999998653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-15 Score=112.85 Aligned_cols=87 Identities=22% Similarity=0.428 Sum_probs=59.9
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CC---cEEEecCCCCCCC-CC-cEEEeccccccCC
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AG---VEHVGGNMFESVP-EG-DAILMKWILHCWD 269 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~d~~~~~~-~~-D~i~~~~vlh~~~ 269 (360)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ .. +++...|.....+ +. |+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 8999888875 12 3344444443222 23 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKV 290 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~l 290 (360)
+...+|+++++.|||||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 5679999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=117.15 Aligned_cols=103 Identities=17% Similarity=0.403 Sum_probs=89.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCCC--cEEEeccccccCCh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~~--D~i~~~~vlh~~~~ 270 (360)
..++.+|||||||+|..+..+++..|+.+++++|+ +.+++.|++. +++++..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567999999999999999999889999999999 8999999774 67899999988865543 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++..++++++++++ +++++|.|...++
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88899999999998 5788888876544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=127.69 Aligned_cols=154 Identities=10% Similarity=0.072 Sum_probs=114.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCCCCCCCcEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVPEGDAILM 261 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~~~~~~D~i~~ 261 (360)
..+++.+. .+++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ..+++...|+.+.....|+|++
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 34556665 6778899999999999999998876 678999998 8888877653 2477888887643123499999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
..+++|+++.....++++++++|||||++++.+...+...... ..+++-. .++++..++.+++.+.++ .||
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~~ 305 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GLF 305 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CCc
Confidence 9999999877778999999999999999999886554321110 0111111 135777888999888866 589
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
.+.++...+
T Consensus 306 ~v~d~~~~~ 314 (383)
T PRK11705 306 VMEDWHNFG 314 (383)
T ss_pred EEEEEecCh
Confidence 988876554
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=112.73 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=99.5
Q ss_pred hcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH----hCCCCCCcEEEecCCCCC-----CCCC-cEE
Q 018145 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAI 259 (360)
Q Consensus 191 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~d~~~~-----~~~~-D~i 259 (360)
.++ .+++.+|||+|||+|.++..+++..+..+++++|. +.+++ .+++..+|.++.+|+.++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 344 67788999999999999999999987678999998 76655 445457799999998752 2233 988
Q ss_pred EeccccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 260 LMKWILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 260 ~~~~vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
++. .+++ ....+|+++++.|||||+++|.-+..+.+... ... +..++..+++++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-------------------~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-------------------DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-------------------CHH-HHHHHHHHHHHH
Confidence 743 3322 33457899999999999999952221111000 000 112344599999
Q ss_pred cCCceeeEEecCCc---eeEEEEe
Q 018145 339 AGFKGINFASCVCN---LYIMEFF 359 (360)
Q Consensus 339 aGf~~~~~~~~~~~---~~vi~~~ 359 (360)
+||+.++......+ +..++++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 99999999887644 6666554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=131.77 Aligned_cols=144 Identities=16% Similarity=0.254 Sum_probs=109.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC---CCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE---SVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~---~~~~~- 256 (360)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .++++++.+|+.+ +++..
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 45556555 4456799999999999999999875 46888888 888876643 2578999999864 34443
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||+++++...+|+++++.|||||++++.|.+....... .. . ......++..+|.++
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---------~~---~--~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS---------KR---K--NNPTHYREPRFYTKV 169 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc---------cc---c--CCCCeecChHHHHHH
Confidence 99999999999998888999999999999999999999775432100 00 0 012334578899999
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
|.++||.....
T Consensus 170 f~~~~~~~~~~ 180 (475)
T PLN02336 170 FKECHTRDEDG 180 (475)
T ss_pred HHHheeccCCC
Confidence 99999886643
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=120.61 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ..++. |+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 468899998 7787766542 257888888876 44444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++++...++++++++|+|||++++++....+....+ .+.....+.+|+.+++++ |++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 9888889999999999999999888776543321100 011223578899999874 8887764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=122.17 Aligned_cols=104 Identities=11% Similarity=0.223 Sum_probs=82.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-----CC--cEEEecCCCCC--CC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-----AG--VEHVGGNMFES--VP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~d~~~~--~~ 254 (360)
..++..++ ++.+|||+|||+|..+..+++.++ ..+++++|+ +++++.++++ ++ |.++.+|+.+. .+
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34544443 457899999999999999999987 588999999 8888776542 33 56789999762 22
Q ss_pred C-----C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 E-----G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~-----~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
. . .++++.+.++++++++...+|++++++|+|||+++|
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 2 355667889999999999999999999999999997
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-13 Score=111.86 Aligned_cols=124 Identities=14% Similarity=0.237 Sum_probs=95.4
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEe
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILM 261 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~ 261 (360)
..+. ..++.+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|.....+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 55678999999999999999999999999999999 8888777542 46899999876544444 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
....++ ...+++.+++.|+|||++++.....+ +..++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 876543 34689999999999999988543211 23556788999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+.+++..
T Consensus 150 ~~~~~~~ 156 (187)
T PRK08287 150 SELDCVQ 156 (187)
T ss_pred CcceEEE
Confidence 8777643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=115.27 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .++++..+|+.......|+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4568999999999999999998754 5888888 8888877653 3689999994333223499999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-----cCCCccCCHHHHHHHHHHcCCc
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-----DGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+++++...+++++.+.+++++. +.... .. +.. .......... .......+.++|.++++++||+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~---~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLI-FTFAP---YT---PLL----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEE-EEECC---cc---HHH----HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9988889999999998754443 32221 10 000 0111110000 0122345789999999999999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
+.++.+...
T Consensus 209 ~~~~~~~~~ 217 (230)
T PRK07580 209 VVRTERISS 217 (230)
T ss_pred eEeeeeccc
Confidence 999877654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=109.35 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=103.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CCcEEEeccccccCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EGDAILMKWILHCWD 269 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~D~i~~~~vlh~~~ 269 (360)
++.+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|+.+..+ ..|+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 7888888 8888877653 357889999877333 349999998887665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 270 DD-------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 270 ~~-------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++ -...+|+.+.+.|||||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999875321 245
Q ss_pred HHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 331 EYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++.+++++.||+...+....-.+--++++|
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 678889999999888887766666666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-14 Score=106.78 Aligned_cols=88 Identities=18% Similarity=0.399 Sum_probs=73.3
Q ss_pred EEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEec-ccccc
Q 018145 201 LVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMK-WILHC 267 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~-~vlh~ 267 (360)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++. .+++++..|+.+ +...+ |+|+++ .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8898887653 479999999988 54433 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 018145 268 WDDDHCLRILKNCYKAVPGNG 288 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG 288 (360)
+++++..++++++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-13 Score=114.27 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=107.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-----CCCCC--cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-----SVPEG--DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-----~~~~~--D~i~~~ 262 (360)
+.+||+||||.|....-+++..|+ +++..+|. |.+++..+++ .++.....|+.. +.+.+ |+|++.
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 348999999999999999999988 89999998 8899988765 345555555544 22233 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC---ccCCHHHHHHHHHHc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG---RERTKKEYTELAIAA 339 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~a 339 (360)
++|..++++.....+++++++|||||.|++.|+...+-..-+.. ....++....+.. .| -..+.+++.+++.++
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~--~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK--KGQCISENFYVRG-DGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc--CCceeecceEEcc-CCceeeeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999876432100000 0011111111111 22 124899999999999
Q ss_pred CCceeeEE
Q 018145 340 GFKGINFA 347 (360)
Q Consensus 340 Gf~~~~~~ 347 (360)
||..++..
T Consensus 229 gf~~~~~~ 236 (264)
T KOG2361|consen 229 GFEEVQLE 236 (264)
T ss_pred ccchhccc
Confidence 99987764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=106.08 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=113.2
Q ss_pred HHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcE
Q 018145 171 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVE 243 (360)
Q Consensus 171 ~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~ 243 (360)
..|++.|..+..-....+- .+-+......||+||||+|..-.. -.--|..+++.+|. |.|-+.+.+. ..+.
T Consensus 51 ~~yne~~~~ykrelFs~i~-~~~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIY-YFLGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHhcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 3455556555443322222 122244557899999999986532 22226788999998 7776655432 4566
Q ss_pred -EEecCCCC-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh
Q 018145 244 -HVGGNMFE-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM 318 (360)
Q Consensus 244 -~~~~d~~~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (360)
|+.++..+ + ++++ |+|++..+|.-.. +..+.|+++.+.|+|||+++++|++..+..... .......+-...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n--~i~q~v~ep~~~ 204 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWN--RILQQVAEPLWH 204 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHH--HHHHHHhchhhh
Confidence 99998888 4 5655 9999999998654 668999999999999999999999876532111 011111121111
Q ss_pred hhcCCCccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 319 TRDGGGRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 319 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
.. ..|-..|.+.| ++|+++-|+..+......+
T Consensus 205 ~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 205 LE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFG 236 (252)
T ss_pred ee-ccceEEehhHH-HHhhhcccccchhhcccCC
Confidence 11 24555677666 6778899999888776644
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=116.26 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=102.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CC--cEEEecCCCC-CCC--CCcEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG--VEHVGGNMFE-SVP--EGDAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~d~~~-~~~--~~D~i~~~~vlh~ 267 (360)
.+.+|||||||.|.++..+++.. .++++.|. +..++.|+.+ .. +++.....++ ... ..|+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 46899999999999999999986 78888998 8899988865 23 3466665555 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh--hHHHhhhcCC----CccCCHHHHHHHHHHcCC
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL--DVLLMTRDGG----GRERTKKEYTELAIAAGF 341 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~t~~e~~~ll~~aGf 341 (360)
+++++ .+++.+.+.+||||.+++.+..+... ......+ .........+ .+...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99764 59999999999999999988754321 1111111 1111111111 234578899999999999
Q ss_pred ceeeEEec
Q 018145 342 KGINFASC 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
.+.+...+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88777543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-13 Score=114.87 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=104.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------C----CcEEEecCCCCCCCCCcEEEeccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
+++|||||||+|-++..|++.. ..++++|. +.+++.|+++ . ++++.+.|.....+..|+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 4789999999999999999985 66888888 8899888764 1 367777777665555799999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh--hhhHHHhhhcCC----CccCCHHHHHHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS--LLDVLLMTRDGG----GRERTKKEYTELAIA 338 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~t~~e~~~ll~~ 338 (360)
++|+.+ ...+++.+.+.|||||+++|.+....-. .+... ..+........| .+..++++...++..
T Consensus 168 leHV~d--p~~~l~~l~~~lkP~G~lfittinrt~l------S~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKD--PQEFLNCLSALLKPNGRLFITTINRTIL------SFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhC--HHHHHHHHHHHhCCCCceEeeehhhhHH------HhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 999764 4789999999999999999988654321 11111 111111111112 345689999999999
Q ss_pred cCCceeeEEec
Q 018145 339 AGFKGINFASC 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
+|+++..+...
T Consensus 240 ~~~~v~~v~G~ 250 (282)
T KOG1270|consen 240 NGAQVNDVVGE 250 (282)
T ss_pred cCcchhhhhcc
Confidence 99998777543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.3e-12 Score=117.13 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=86.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~~~ 255 (360)
+.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 44566666 33346999999999999999999999999999998 7788777642 2679999998875443
Q ss_pred --CcEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 --GDAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 --~D~i~~~~vlh~---~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|+++--+|. ++++...++++.+++.|+|||.|+++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 399999766653 455566789999999999999999984
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=106.18 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=98.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCC-CC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SV-- 253 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-- 253 (360)
.++.+|||+|||.|..+..|+++ +..++++|+ +.+++.+.+ ..+|++..+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999986 667999998 777776311 2468999999998 32
Q ss_pred -CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 254 -PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 254 -~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+..|.|+-+.++|+++++....+++.+.++|||||++++.....+.... .+.....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------------~gpp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------------AGPPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------------CCcCCCCCHHHH
Confidence 2239999999999999999999999999999999998887765532100 001123578899
Q ss_pred HHHHHHcCCceeeEE
Q 018145 333 TELAIAAGFKGINFA 347 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~ 347 (360)
.++|.. +|.+..+.
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998874 46555544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=103.49 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCC-CcEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-GDAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~-~D~i~~~~vlh 266 (360)
+++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++. ++++++.+|+.+ +... .|+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999998 7888777542 459999999987 3332 399998652 1
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
....+++.+++.|||||++++.+.
T Consensus 123 -----~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 123 -----SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -----CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 346789999999999999998853
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-12 Score=109.98 Aligned_cols=155 Identities=13% Similarity=0.110 Sum_probs=102.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hh------HHHhCC-CCCCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PH------VVQDAP-SYAGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~------~~~~a~-~~~~v~~~~~d~~~-~~~~~ 256 (360)
+.+...++.+ .+.+|||||||+|+++..++.+.+ ..++++|. +. .++... ....+.+...-+.+ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3455555423 458999999999999999999854 35788884 21 222222 12334444444444 33233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++-.||+|..++ ...|+.+++.|+|||.|++-..+.+.+......+. ..+-.|.. --..+|...+..|
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 999999999998754 67899999999999999998877765432211100 00001110 1245699999999
Q ss_pred HHHcCCceeeEEecC
Q 018145 336 AIAAGFKGINFASCV 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++.+||+.++++...
T Consensus 255 l~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 255 LERAGFKDVRCVDVS 269 (315)
T ss_pred HHHcCCceEEEecCc
Confidence 999999999998654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=113.73 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCcceEEEEcCCcchHHHH--HHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC---CCcEEEe
Q 018145 196 QNVERLVDVGGGFGVTLSM--ITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP---EGDAILM 261 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~---~~D~i~~ 261 (360)
.++.+|+|||||.|.++.. ++..+|+.+++++|. +++++.|++. ++++|..+|..+..+ +.|+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999998844333 335689999999999 8888877642 579999999987332 2399999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. ++|+|..++..++|+++++.|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976777899999999999999999865
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-12 Score=108.09 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=98.5
Q ss_pred hcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCCCCCC--cEEEecc
Q 018145 191 HYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVPEG--DAILMKW 263 (360)
Q Consensus 191 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~~~~~--D~i~~~~ 263 (360)
.++ .....+++|+|||.|.++..|+.++- +.+++|. +.+++.|+++ ++|++...|+.+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 55678999999999999999999963 5677777 8888887653 78999999998866654 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 264 ILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 264 vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
++|++++ ++...+++++.++|+|||.|++..... . ... ..|.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-~-----------~c~--------~wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-A-----------NCR--------RWGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-H-----------HHH--------HTT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-C-----------ccc--------ccCcccchHHHHHHHHHH-hh
Confidence 9999986 678899999999999999999977521 0 111 123444788899999986 66
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.++.+.+.
T Consensus 174 ~~~~~~~~ 181 (201)
T PF05401_consen 174 EVERVECR 181 (201)
T ss_dssp EEEEEEEE
T ss_pred heeEEEEc
Confidence 66665553
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=113.51 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=94.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCCCCCcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++|...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 568999998 8888877543 2467888887542223399999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC------CccCCHHHHHHHHHH
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTELAIA 338 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~~ 338 (360)
++|++++....+++.+.+ +.+||. +|.. .+.. .... .+...-.. ..+ ....+.+++.++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~---~~~~----~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT---LYYD----ILKRIGEL-FPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc---hHHH----HHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHH
Confidence 999998777788888875 455544 4422 1211 0000 11110000 111 112379999999999
Q ss_pred cCCceeeEEecCC
Q 018145 339 AGFKGINFASCVC 351 (360)
Q Consensus 339 aGf~~~~~~~~~~ 351 (360)
+||++.+..-..+
T Consensus 290 AGf~v~~~~~~~~ 302 (315)
T PLN02585 290 AGWKVARREMTAT 302 (315)
T ss_pred CCCEEEEEEEeec
Confidence 9999877654443
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=104.63 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=72.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC-CCCC-CcEEEeccccccC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPE-GDAILMKWILHCW 268 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~-~D~i~~~~vlh~~ 268 (360)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ .... .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 68999999999999999999999999999998 666665543 2469999999987 3222 39998866 543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 3457888999999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-12 Score=110.00 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C-CC-CC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S-VP-EG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~-~~-~~-D~i~~~~vl 265 (360)
.++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++++...|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45689999999999999988876 457888888 6777766532 346787777765 2 12 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc----CCCccCCHHHHHHHHHHcCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD----GGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~e~~~ll~~aGf 341 (360)
++.++ ...+|+.+.+.|+|||++++..+.... .................. ......+.++|.++++++||
T Consensus 125 ~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPD--PASFVRACAKLVKPGGLVFFSTLNRNL----KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCC--HHHHHHHHHHHcCCCcEEEEEecCCCh----HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 99874 357899999999999999987643211 000000000000010000 01234588999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9988753
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=111.97 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=85.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCC-cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~-D~i 259 (360)
.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. -..+++..|.....++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445454 23346899999999999999999999999999998 7788877642 23567888887754444 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+++-.+|+. ..+...++++.+.+.|||||+|+|+..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567899999999999999999764
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-11 Score=101.87 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=98.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCCCCC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFESVP-- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~~~~-- 254 (360)
.+..+|||+|||.|..+..|++. +.+++++|+ +..++.+.. ..+|++..+|+++..+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 44579999999999999999985 677999998 777775411 1468999999998322
Q ss_pred --CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 255 --EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 255 --~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
..|+|+-+.++|+++++...++++.+.++|+|||+++++....++... .+.....+.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~------------------~gPp~~~~~~el 175 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL------------------AGPPFSVSDEEV 175 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC------------------CCCCCCCCHHHH
Confidence 229999999999999999999999999999999987776655433210 001123588999
Q ss_pred HHHHHHcCCceeeEEe
Q 018145 333 TELAIAAGFKGINFAS 348 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~ 348 (360)
.+++.. +|.+..+..
T Consensus 176 ~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 176 EALYAG-CFEIELLER 190 (218)
T ss_pred HHHhcC-CceEEEeee
Confidence 999963 366655543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-12 Score=104.21 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=93.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.++..++ .-++.++||+|||.|..+..|++. +..++.+|. +..++.+++ .-.|+....|+.+ .++.. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 445789999999999999999998 456777777 555554432 1348889999987 56655 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++++++.+....+++++.+.++|||++++.......+...+ . +....+...|+.+.++
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~--------~~~f~~~~~EL~~~y~- 160 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------S--------PFPFLLKPGELREYYA- 160 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------C--------CCCcccCHHHHHHHhC-
Confidence 9999999999999999999999999999999999776533221100 0 0112335667777776
Q ss_pred cCCceeeE
Q 018145 339 AGFKGINF 346 (360)
Q Consensus 339 aGf~~~~~ 346 (360)
||++++.
T Consensus 161 -dW~il~y 167 (192)
T PF03848_consen 161 -DWEILKY 167 (192)
T ss_dssp -TSEEEEE
T ss_pred -CCeEEEE
Confidence 5777664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=94.33 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=77.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCC-Cc
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~-~D 257 (360)
+..+. ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.+++. .+++++.+|+... .+. .|
T Consensus 12 ~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 12 LSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred HHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 34444 45567999999999999999999999999999998 7777776532 5688998887641 222 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+|++....+ ...++++.+++.|||||++++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999876543 3458999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=102.85 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=93.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh----HHHhCCCCCCcEEEecCCCCCC-----CC-CcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFESV-----PE-GDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~~-----~~-~D~i~~~ 262 (360)
+++..+|||+|||+|.++..+++.. +.-+++.+|+ +. +++.++...+|.++.+|+..+. .+ .|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999987 3568888987 43 6677766678999999986531 22 3999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
... + ++...++.++++.|||||+|+|.......+..+ ....+-.+|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~g~-------------------~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDSTA-------------------KPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEeccccccCC-------------------CHHHHHHHHH-HHHHHcCCc
Confidence 642 2 345567778999999999999942211111000 0011111344 889999999
Q ss_pred eeeEEecC
Q 018145 343 GINFASCV 350 (360)
Q Consensus 343 ~~~~~~~~ 350 (360)
.++.+.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 99998876
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=106.72 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=97.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----C-CcEEEecCCCC-CCC--CC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----A-GVEHVGGNMFE-SVP--EG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~d~~~-~~~--~~-D~i~~~~vl 265 (360)
++.+|||+|||+|.++..+++..+ +++++|. +.+++.++.+ . ++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999998888654 5888887 7777766542 2 58888888765 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhh--HHHhhhcC----CCccCCHHHHHHHHHHc
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLD--VLLMTRDG----GGRERTKKEYTELAIAA 339 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~t~~e~~~ll~~a 339 (360)
|+.++. ..+|+.+++.|+|||++++.+...... ........ ........ .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK------SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch------HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998744 579999999999999999876532110 00000000 00000000 11334788999999999
Q ss_pred CCceeeEEe
Q 018145 340 GFKGINFAS 348 (360)
Q Consensus 340 Gf~~~~~~~ 348 (360)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=102.32 Aligned_cols=99 Identities=23% Similarity=0.381 Sum_probs=79.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~ 267 (360)
+..+|||+|||+|.++..+++.+|+.+++.+|. +.+++.+++. ..++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999998 8888877542 338999999998665 33 99999877776
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 WDD---DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ~~~---~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-.+ +-..++++.+.+.|||||+++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 443 2467899999999999999987553
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=105.69 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=77.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCC-CC-C--CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM-FE-S--VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~-~~-~--~~~~--D~i~~~~ 263 (360)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .+++++.+|+ .. + ++.+ |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999998 8888877542 5799999998 43 3 4433 9999876
Q ss_pred ccccCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..++... .....+|++++++|||||++++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 5432211 1136789999999999999998753
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=103.96 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=93.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC--cEEEeccccc-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILMKWILH- 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~--D~i~~~~vlh- 266 (360)
.+.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.. ++++++.+|+.+..+.. |+|+++--.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999998 8888877542 46999999998855433 9999843222
Q ss_pred -----cCChh------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 267 -----CWDDD------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 267 -----~~~~~------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
.+..+ ....+++++.+.|+|||++++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22211 124689999999999999887321
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
....+++.++++++||+.+++...-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124568889999999988887654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.9e-11 Score=97.58 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=101.7
Q ss_pred hhhhccCccHHHHHHHHHhh----cchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHh
Q 018145 160 FEYASGNPRFNETYHEAMFN----HSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 235 (360)
Q Consensus 160 ~~~~~~~~~~~~~~~~~m~~----~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 235 (360)
++.+.++|+....|+++.+. +-..+.+.+++.+...++...|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence 44566777777777666543 33335677777776444568999999999998866532 346777885221
Q ss_pred CCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 236 APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 236 a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
.+ .++..|+.+ |++.. |+++++..|.. -+...+|++++|.|||||.|.|.|....
T Consensus 105 ---n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-------------- 162 (219)
T PF05148_consen 105 ---NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR-------------- 162 (219)
T ss_dssp ---ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG--------------
T ss_pred ---CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------------
Confidence 12 467789987 87765 99999988864 2567899999999999999999997431
Q ss_pred hhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 313 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.-+.+++.+.++..||+.........+..+.+++|
T Consensus 163 -------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp --------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 11456678889999999988766667777777765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=99.79 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=86.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---C---CcEEEecCCCCCCCC-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A---GVEHVGGNMFESVPE-G 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~---~v~~~~~d~~~~~~~-~ 256 (360)
.+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ..+++.++.. + +..+...|.+++..+ .
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 345677777 44445999999999999999999999999999998 7788877764 2 235777787776554 4
Q ss_pred cEEEeccccccCC---hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWD---DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~---~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+++=-+|.-- ..-..++++.+.+.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999998888622 12234899999999999999999875
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-11 Score=100.98 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=96.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCC-cEEEecCCCCCCCC---CcEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAG-VEHVGGNMFESVPE---GDAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~d~~~~~~~---~D~i~~~~vlh 266 (360)
+..+.||.|+|.|..+..++-.. .-++-.+|. +..++.|++ ..+ .++.+....+-.|+ .|+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46899999999999999876654 334555565 777777763 234 34555555442332 29999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
|++|++..++|++++++|+|+|.++|-|.+..... ..+| ...++-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D-----~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD-----EEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE-----TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC-----CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999998876431 0122 012456789999999999999999887
Q ss_pred Eec
Q 018145 347 ASC 349 (360)
Q Consensus 347 ~~~ 349 (360)
..-
T Consensus 200 ~~Q 202 (218)
T PF05891_consen 200 EKQ 202 (218)
T ss_dssp EE-
T ss_pred ccc
Confidence 544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-10 Score=94.69 Aligned_cols=124 Identities=22% Similarity=0.298 Sum_probs=91.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CC-cEEEecCCCCCCCC-C-cEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFESVPE-G-DAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~d~~~~~~~-~-D~i~~~~v 264 (360)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 578888898 7888776432 22 88999998885544 3 99998654
Q ss_pred cccCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 265 LHCWD-------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 265 lh~~~-------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+...+ ......+++++.++|||||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1234578999999999999998765311
Q ss_pred cCCHHHHHHHHHHcCCceeeEEecC
Q 018145 326 ERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...+++.+++.++||++..+....
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecc
Confidence 023467789999999987765543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-11 Score=97.75 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=85.0
Q ss_pred EEecc-hhHHHhCCCC---------CCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 225 VNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 225 ~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+++|. +.|++.|+++ .+++++.+|+.+ +++.. |+|++..++|++++ ..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 36777 8888877432 369999999988 76653 99999999999874 4689999999999999999
Q ss_pred EEeeecCCCCCCchhhhhhhh-hhHHHhhhcCC-----------CccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 292 VMNSIVPEIPEVSSAARETSL-LDVLLMTRDGG-----------GRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 292 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
+.|...++..-......+... .-......... ...++.+++.++|+++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999876442100000000000 00000000000 12358899999999999999988777644
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-10 Score=100.17 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C-cEEEeccc-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-DAILMKWI- 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~-D~i~~~~v- 264 (360)
..++.+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++. .+++++.+|++++.+. . |+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999998 7777776542 4799999999875542 3 99988421
Q ss_pred -----cccCCh------------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc
Q 018145 265 -----LHCWDD------------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 321 (360)
Q Consensus 265 -----lh~~~~------------------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (360)
++.+.+ +....+++++.+.|+|||++++ +.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g--~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG--Y---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC--c----------------------
Confidence 111111 1235788999999999999987 210 0
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEec-CCceeEEEEe
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASC-VCNLYIMEFF 359 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 359 (360)
...+++.+++++.||+.+++... .+...++.++
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01345888999999997777543 3444455554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=97.05 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------CCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~~- 255 (360)
++.+.+..++++.+|||||||+|.++..+++.. +..+++++|+.++. ..++++++.+|+.+. .+.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 344444424567899999999999999999987 45789999984432 235799999999873 333
Q ss_pred C-cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G-DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~---------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. |+|++..+.+..+... ...+|+.+++.|||||++++..+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2 9999987776544321 24689999999999999999764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-11 Score=101.83 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=76.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C---CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S---VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~---~~~~--D~i~~~~ 263 (360)
...++||||||+|.++..+++.+|+..++++|+ +.+++.++++ .+++++.+|+.+ . .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 7787776532 579999999975 2 3443 8888765
Q ss_pred ccccCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..++..... ...+++.++++|||||.|++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 544322110 14689999999999999998663
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-10 Score=92.37 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCCCcE
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPEGDA 258 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~~D~ 258 (360)
+..+. +.++.+++|||||+|..+.+++...|..+++.+|. ++.++..+++ ++++++.+|+-+. .++.|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34455 67889999999999999999999999999999997 6666655442 7899999998773 333499
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|++...- ....+|+.+...|||||+|++.-..
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9998762 3457899999999999999985543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=99.48 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=76.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~- 255 (360)
.+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|..+..+ .
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 3444444 55678999999999999999988774 568899998 8888776542 358999999987433 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++..++++++ +++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 39999998887655 35778999999998743
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=94.93 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=110.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC------CCc-EEEecCCCCC--C----CCCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY------AGV-EHVGGNMFES--V----PEGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~~v-~~~~~d~~~~--~----~~~D~i 259 (360)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++. ..+ +|..+|+++. . |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 67888887 6666665432 444 9999999982 2 233999
Q ss_pred EeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC-----CccCCHHHHH
Q 018145 260 LMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG-----GRERTKKEYT 333 (360)
Q Consensus 260 ~~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~ 333 (360)
+.+..+..++|.+ +...|+.+++++.|||+|+...--+.+ ..+. +......+ .+ .+.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP-----Qle~----IAr~LtsH-r~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP-----QLEM----IARVLTSH-RDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc-----chHH----HHHHHhcc-cCCCceEEEecCHHHHH
Confidence 9999999999877 445799999999999999875532221 1111 11111111 12 2568999999
Q ss_pred HHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 334 ELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
+|++++||+-++..-.+ +-+.|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999966654443 4455655543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=105.15 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCC---eEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQI---KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
+..+|||||||+|.++..+++.+|.. .++++|+ +.+++.|++. +++.+..+|..+ +++.+ |+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 45789999999999999999988753 6899999 8888887654 679999999887 66654 99987543
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+ ..+++++++|||||+++++.+.
T Consensus 161 ~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 1 2367899999999999998653
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=95.74 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCC--CcEEEeccccccCCh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPE--GDAILMKWILHCWDD 270 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~--~D~i~~~~vlh~~~~ 270 (360)
++.+|||||||+|.++..+++.. ...++++|+ +.+++.++. .+++++.+|+.+ +.+. .|+|++++++||+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 45799999999999998887663 567788998 778877754 468899998865 2333 299999999999875
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH--------hh-hcCCCccCCHHHHHHHHHHcCC
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL--------MT-RDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~t~~e~~~ll~~aGf 341 (360)
...+|+++.+.++ .+++.-+.... ..........-.+ .. ........+.+++.++++++||
T Consensus 91 --~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 91 --PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred --HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 4568888887655 33333211100 0000000000000 00 0012345689999999999999
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 998876553
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=98.10 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=77.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC-CC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PE- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~-~~- 255 (360)
..++..+. ..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.++++ .+++++.+|..... +.
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34555555 6778999999999999999888875 4578999998 8888877653 57999999988733 32
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++...+++.+ +.+.+.|||||++++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 39999987776543 35677899999998853
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-10 Score=98.07 Aligned_cols=120 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CC----cEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AG----VEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~----v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ |.+++.++++ .+ +.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4568999999999999988776544 36888888 8888877653 22 23322221 3499987533
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.+....+++.+.+.|||||++++...... ..+++.+.+++.||+++++.
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 23456789999999999999998754211 24567889999999999887
Q ss_pred ecCCceeE
Q 018145 348 SCVCNLYI 355 (360)
Q Consensus 348 ~~~~~~~v 355 (360)
...+-..+
T Consensus 238 ~~~~W~~~ 245 (250)
T PRK00517 238 ERGEWVAL 245 (250)
T ss_pred EeCCEEEE
Confidence 76544443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=94.02 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=74.9
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CCC-C
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPE-G 256 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~~-~ 256 (360)
..+. ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3344 5677899999999999999998864 6678999998 8888866532 4688999998762 222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
|.|++... ......+++.+.+.|||||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998542 23456789999999999999986
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=90.82 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=97.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~i~~~~vlh~~~ 269 (360)
+++.||||+|||.|.+...|.+. .++++.++++ ++-+..+.+ .++.++.+|+.+ .+|+. |.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999887775 6899999988 555555543 568999999987 35654 9999999999876
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH----Hhh---------hcCCCccCCHHHHHHHH
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL----LMT---------RDGGGRERTKKEYTELA 336 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~~t~~e~~~ll 336 (360)
. ..++|+++.|+ |.+.++.=+-.. .+..-+.+. |.. -+++-+..|..+++++.
T Consensus 90 ~--P~~vL~EmlRV---gr~~IVsFPNFg---------~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 90 R--PDEVLEEMLRV---GRRAIVSFPNFG---------HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred H--HHHHHHHHHHh---cCeEEEEecChH---------HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 4 35677776554 555555322110 111111111 000 02344556899999999
Q ss_pred HHcCCceeeEEecCCc
Q 018145 337 IAAGFKGINFASCVCN 352 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~ 352 (360)
++.|+++++.....+.
T Consensus 156 ~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 156 RELGIRIEERVFLDGG 171 (193)
T ss_pred HHCCCEEEEEEEEcCC
Confidence 9999999998877643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=103.23 Aligned_cols=107 Identities=13% Similarity=0.281 Sum_probs=80.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC---CCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~ 256 (360)
.+++.+. ......+||||||+|.++..+++.+|+..++++|+ +.+++.+.+ ..+|.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 23456999999999999999999999999999998 677666543 2579999999854 35544
Q ss_pred --cEEEeccccccCChh-H----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 --DAILMKWILHCWDDD-H----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~-~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|++.+... |+.. . ...+|+.++++|+|||.+.+..-
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9998865443 2211 1 14789999999999999999664
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-10 Score=96.28 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=75.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC--C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP--E- 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~--~- 255 (360)
.+++.+. .+++.+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ .+++++.+|..+..+ .
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 4444454 66788999999999999999998865 467888887 8888877643 579999999987322 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.|+|++....++. .+.+.+.|+|||++++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999988765543 34578899999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=91.30 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=112.2
Q ss_pred hhhhccCccHHHHHHHHHhhcch----hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHh
Q 018145 160 FEYASGNPRFNETYHEAMFNHST----IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD 235 (360)
Q Consensus 160 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 235 (360)
++.+..+|.....|+...+.... ...+.|++.+...++...|.|+|||.+.++.. ....+.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeec----
Confidence 45566788877777776654332 24566777766455678999999999998861 123455566421
Q ss_pred CCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 236 APSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 236 a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
.+-+++..|+.+ |.++. |+++++..|.. .+...+++.++|.|+|||.++|.|....
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 234677889988 66654 99998887763 3567899999999999999999996321
Q ss_pred hhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 313 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.-+...+.+.|...||.+........+..+.++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11233477888999999888877777777777765
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.1e-10 Score=94.85 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=77.6
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCCC-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~~-~ 256 (360)
++..++ ..++.+|||+|||+|.++..+++..|+.+++++|. |.+++.++++ .+++++.+|+.+ .... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 344444 56678999999999999999998888899999998 8888877542 468999999865 2222 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.+++.. ......+++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6665422 12456889999999999999999875
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-10 Score=100.76 Aligned_cols=96 Identities=23% Similarity=0.349 Sum_probs=75.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEecc---
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKW--- 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~~--- 263 (360)
++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 8888877653 4699999999876554 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 264 ----------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 264 ----------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236789999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=94.91 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=92.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCC-CCC-cEEEeccccccCChhH-
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESV-PEG-DAILMKWILHCWDDDH- 272 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~-~~~-D~i~~~~vlh~~~~~~- 272 (360)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+++--+++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999988887789999999 8899888764 67999999998833 333 9999988887765432
Q ss_pred -----------------HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 273 -----------------CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 273 -----------------~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
..+.++.+...|+|+|.+++. ....+ .+ ....+.++++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~y----------~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------YY----------DGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------cc----------cccCCHHHHHHH
Confidence 235677778888999977766 11110 01 112368899999
Q ss_pred HHHcCCc
Q 018145 336 AIAAGFK 342 (360)
Q Consensus 336 l~~aGf~ 342 (360)
++++||.
T Consensus 202 l~~~g~~ 208 (279)
T PHA03411 202 SKQTGLV 208 (279)
T ss_pred HHhcCcE
Confidence 9999986
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=98.51 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=75.5
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEec------
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMK------ 262 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~------ 262 (360)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ .+++++.+|++++.+. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999998 8888877652 3599999999886654 3 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 263 -------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 263 -------~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.++++-|. +....+++.+.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1456789999999999998865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-09 Score=97.50 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=93.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCC-C--CcEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-E--GDAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~-~--~D~i~~~~vlh 266 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ .+++++.+|+++ ..+ . .|+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 8898887653 369999999976 333 2 29999843211
Q ss_pred cCC-----------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 267 CWD-----------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 267 ~~~-----------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
.-+ -+-..++++.+.+.|+|||++++ |...+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~~------------------------- 384 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGFD------------------------- 384 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECcc-------------------------
Confidence 000 01234677788889999998764 32110
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecCC-ceeEEEE
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCVC-NLYIMEF 358 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~ 358 (360)
..+.+.+++++.||+.+++...-. ..-++.+
T Consensus 385 ----Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 385 ----QGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ----HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 234678888999999888876653 3445443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=92.07 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=80.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCC--CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE--GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~--~D~i~~ 261 (360)
.....+|||+|||+|..+..++++++.++++++++ +.+.+.|++. +||+++++|+.+ . .+. .|+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44579999999999999999999999999999999 7788877653 689999999987 2 222 399999
Q ss_pred ccccccCChh----------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDDD----------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~----------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+=-.+.-++. ....+++.+.+.|||||++.++-+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 6544432221 356889999999999999999764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.9e-10 Score=100.09 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=75.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecc----
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKW---- 263 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~---- 263 (360)
+.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. .|+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 8888877653 4699999999875553 39999851
Q ss_pred ---------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 018145 264 ---------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 264 ---------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246789999999999999886
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-10 Score=98.56 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~~~-D~i~~~~ 263 (360)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.|++. ++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 9999887642 679999999865 23333 9998742
Q ss_pred cccc--CChh-HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILHC--WDDD-HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh~--~~~~-~~~~~L~~i~~~LkpgG~lli~e 294 (360)
++. .+.. ....+++.+++.|+|||++++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12589999999999999999853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=94.93 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-CcEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-GDAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~D~i~~~~vlh 266 (360)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .++.+...+.....+. .|+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 34689999999999999887764 4568899998 8888877653 3456666653332233 3999986543
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....++.++++.|||||++++...
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2456789999999999999998764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=88.88 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=73.9
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------CCC-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VPE-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~~-~ 256 (360)
+.+.+....++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ..++++++.+|+.++ .+. .
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 33444435678899999999999999999887 56789999983322 235789999998762 233 3
Q ss_pred -cEEEeccccc---cCCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 -DAILMKWILH---CWDD------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 -D~i~~~~vlh---~~~~------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++....| .|.. +....+|+.+++.|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999854322 1111 123678999999999999999864
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-09 Score=89.61 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=73.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC-C-cEEEeccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G-DAILMKWILH 266 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~-~-D~i~~~~vlh 266 (360)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+..+. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999988876 3457889998 7788766542 2478889998775443 3 9999863322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 267 CWDD-------------------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 267 ~~~~-------------------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.-+. .....+++++.+.|||||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1111 114568899999999999999876543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=90.13 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=73.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCCCCC----CC-cEEEecccc--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFESVP----EG-DAILMKWIL-- 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~~~~----~~-D~i~~~~vl-- 265 (360)
++.+|||+|||+|.++..+++..|..+++++|. +.+++.++++ .+++++.+|+++..+ .. |+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999998 8888887653 347899999887432 23 999875321
Q ss_pred ----ccCChh------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 ----HCWDDD------------------HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 ----h~~~~~------------------~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+..+++ -...+++.+.+.|+|||++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 13478888999999999998653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-09 Score=89.49 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=83.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------------------CCCcEEEecCCCC-CC-C
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------------------YAGVEHVGGNMFE-SV-P 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-~ 254 (360)
.++.+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ..+|++..+|+++ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999887 556999998 777776421 1478999999998 32 1
Q ss_pred ----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 ----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 ----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..|+|+-..+|++++++...+..+++.++|+|||+++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1299999999999999999999999999999999999987643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-09 Score=89.45 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=98.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC---C---------------CCCcEEEecCCCC-CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---S---------------YAGVEHVGGNMFE-SVP 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~~d~~~-~~~ 254 (360)
..++.+||+.|||.|.-+..|++. +.+++++|+ +.+++.+. . ..+|++..+|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999987 568999999 77777651 1 1368999999999 322
Q ss_pred C---CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 255 E---GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 255 ~---~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
. .|+|+=..+|+.++++.+.+..++++++|+|||+++++....+.... .+.....+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~GPPf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------EGPPFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------SSSS----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------CCcCCCCCHHH
Confidence 2 29999999999999999999999999999999996666554432110 00111237889
Q ss_pred HHHHHHHcCCceeeEEe
Q 018145 332 YTELAIAAGFKGINFAS 348 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~ 348 (360)
+.++|. .+|++..+..
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999999 7888776653
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-09 Score=79.37 Aligned_cols=92 Identities=24% Similarity=0.329 Sum_probs=74.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------CCCCcEEEecCCCCCC---CCC-cEEEeccccccC
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFESV---PEG-DAILMKWILHCW 268 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~---~~~-D~i~~~~vlh~~ 268 (360)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ...++++..+|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67788999998 66655544 1257899999998832 233 999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.+....+++.+.+.|+|||++++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 456788999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=85.85 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=92.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-C-CCC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-V-PEG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~-~~~-D~i~~~~vl 265 (360)
...+|||+|||+|.++..|++..-....+++|. +.+++.|+.. +.|+|...|+.++ + +.. |+|+-...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 334999999999999999999875556788887 7777766542 3499999999984 3 223 888655444
Q ss_pred ccC------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 266 HCW------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 266 h~~------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
..+ +.......+..+.+.|+|||.++|.-- -.|.+|+.+.++.-
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcC
Confidence 322 222335678999999999999988431 12688899999999
Q ss_pred CCceeeEEecC
Q 018145 340 GFKGINFASCV 350 (360)
Q Consensus 340 Gf~~~~~~~~~ 350 (360)
||.....++.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99999888876
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.5e-09 Score=100.30 Aligned_cols=125 Identities=16% Similarity=0.236 Sum_probs=91.7
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecc----
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKW---- 263 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~---- 263 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+++..+. .|+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 8888877653 4789999998875543 39999832
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 264 ----------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 264 ----------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
+..+.|. +....+++.+.+.|+|||++++ |... .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-~------------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-K------------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-c------------------------
Confidence 1111110 1234678899999999999876 4211 0
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecCCc
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCVCN 352 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 352 (360)
..+.+.+++.+.||..+++...-.+
T Consensus 273 ----q~~~v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 273 ----QEEAVTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred ----hHHHHHHHHHhcCCCceEEEecCCC
Confidence 2345677888899988887765433
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-09 Score=85.62 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=75.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
+.+|||+|||+|.++..+++.. ..+++++|+ |..++.++.. .+++++.+|+.+ . .+.. |+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3689999999999999999998 788888888 8887766542 579999999987 3 4433 99999766
Q ss_pred cccCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 LHCWDD------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 lh~~~~------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+.... +....+++++.+.|||||.++++-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 654221 1346889999999999999998753
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=93.68 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCC-C-cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPE-G-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~-~-D~i~~~~v 264 (360)
.+++.+|||+|||+|.++.+.+.. ..+++++|+ +.+++.++.+ ..+++..+|+.+ +.+. . |+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999998876553 677888898 8888766542 347899999988 5543 3 99998421
Q ss_pred c------c-cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 L------H-CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 l------h-~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. . +...+-...+|+.+++.|||||+++++.+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 1 1 11112346899999999999999998754
|
This family is found exclusively in the Archaea. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-09 Score=94.86 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCC--CCC--CcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES--VPE--GDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~--~~~--~D~i 259 (360)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|.... .+. .|+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999998655568888888 888888764 25799999998762 222 3999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
++-..-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433322221 257899999999999998874
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-09 Score=89.25 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=69.6
Q ss_pred CcceEEEEcCCcch----HHHHHHhhC----C-CCeEEEecc-hhHHHhCCCC---------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKY----P-QIKAVNFDL-PHVVQDAPSY--------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~----p-~~~~~~~D~-~~~~~~a~~~--------------------------- 239 (360)
++.+|...||++|. ++..+.+.. + +.++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 333344411 2 467888888 8888887541
Q ss_pred -------CCcEEEecCCCC-CCCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 -------AGVEHVGGNMFE-SVPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 -------~~v~~~~~d~~~-~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+|+|...|..+ +.+. . |+|+|.+||-+++++...+++++++++|+|||+|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 358999999998 3333 3 99999999999999999999999999999999999955
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=90.18 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=77.0
Q ss_pred CcceEEEEcCCcch----HHHHHHhhCC----CCeEEEecc-hhHHHhCCCC----------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 239 (360)
+..+|...||+||. ++..+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999993 3444444332 467888888 7888876531
Q ss_pred ---------CCcEEEecCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 ---------~~v~~~~~d~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+|+|..+|..+ +.| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 247899999988 443 33 99999999999999999999999999999999988754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=88.37 Aligned_cols=143 Identities=16% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC---------------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA--------------------------------- 240 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--------------------------------- 240 (360)
+..+..+|||||.+|.++..+++.+....++++|+ +..++.|++.-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678999999999999999999998888999999 88888886530
Q ss_pred --------Cc-------EEEecCCCC-CCCCCcEEEecc----ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 241 --------GV-------EHVGGNMFE-SVPEGDAILMKW----ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 241 --------~v-------~~~~~d~~~-~~~~~D~i~~~~----vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
++ .+...|+.. ..++.|+|+|-+ +=-+|.|+....+++++++.|.|||+|++ |+-.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCc---
Confidence 11 112223332 233448987633 32347899999999999999999998875 4321
Q ss_pred CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc--CCceee
Q 018145 301 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA--GFKGIN 345 (360)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 345 (360)
...+........ ......-......+....++.+. ||+.+.
T Consensus 212 --WksY~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 --WKSYKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --hHHHHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 111111111111 11111122344678888888887 555433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=88.72 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=72.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE---G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~---~ 256 (360)
.++..+. ..++.+|||||||+|..+..+++... +++++|. +.+++.++++ .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3344444 56778999999999999987777653 6788887 7777766542 4689999998774332 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3456789999999998653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=88.90 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=87.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcE----EEecCCCCCCC--CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVE----HVGGNMFESVP--EG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~~~~d~~~~~~--~~ 256 (360)
++++.+. .++.+|||+|||+|.++++.++-. ..+++++|+ |.+++.++.+ ++|. ....+...... ..
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~ 230 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF 230 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence 3444443 478999999999999999877754 456777777 8888888764 4454 22222222112 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|+++ +|- +-...+...+++.+||||++++.-.... ..+.+.+.+
T Consensus 231 DvIVAN-ILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~ 276 (300)
T COG2264 231 DVIVAN-ILA----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAY 276 (300)
T ss_pred cEEEeh-hhH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHH
Confidence 999885 342 3466899999999999999998663221 245567888
Q ss_pred HHcCCceeeEEec
Q 018145 337 IAAGFKGINFASC 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
.++||.++++...
T Consensus 277 ~~~gf~v~~~~~~ 289 (300)
T COG2264 277 EQAGFEVVEVLER 289 (300)
T ss_pred HhCCCeEeEEEec
Confidence 8999999988765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.4e-09 Score=87.72 Aligned_cols=145 Identities=13% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcE-EEec---CCCCCC-C-CCcEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVE-HVGG---NMFESV-P-EGDAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---d~~~~~-~-~~D~i 259 (360)
+.+...+ ..+..++||+|||||-.+..+...-. +.+++|+ ..|++.|.++.-.+ +... +|..+. + ..|+|
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccch
Confidence 3444444 34478999999999999888766543 3567787 89999998763211 1111 233322 2 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
....||.++. ....++-.+...|+|||.+.++-...+.... +...-. --...+..-+.++++..
T Consensus 193 ~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l~ps------~RyAH~~~YVr~~l~~~ 256 (287)
T COG4976 193 VAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVLGPS------QRYAHSESYVRALLAAS 256 (287)
T ss_pred hhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCC--------eecchh------hhhccchHHHHHHHHhc
Confidence 9999999988 5678999999999999999997655544211 111000 00112556688999999
Q ss_pred CCceeeEEecC
Q 018145 340 GFKGINFASCV 350 (360)
Q Consensus 340 Gf~~~~~~~~~ 350 (360)
||+++++.+++
T Consensus 257 Gl~~i~~~~tt 267 (287)
T COG4976 257 GLEVIAIEDTT 267 (287)
T ss_pred CceEEEeeccc
Confidence 99999997664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=91.30 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC--CcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE--GDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~--~D~i 259 (360)
+++.+||+||||.|..+..+++..+-.+++++|+ +.+++.+++. +|++++.+|... ..++ .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987633357888888 7788877652 589999999864 2322 3999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~ 293 (360)
++-..-++.+.. -...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 985443322211 1347899999999999998764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=86.75 Aligned_cols=141 Identities=22% Similarity=0.355 Sum_probs=84.2
Q ss_pred CcceEEEEcCCc---chHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CC--cEEEecCCCCC---CC--C--C--c
Q 018145 197 NVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AG--VEHVGGNMFES---VP--E--G--D 257 (360)
Q Consensus 197 ~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~--v~~~~~d~~~~---~~--~--~--D 257 (360)
+...+||||||- |..-.-..+..|+.+++.+|. |-++.+++.. ++ ..++.+|+.++ +. + + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999993 343433445579999999998 8888887652 44 89999999983 22 1 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 258 -----AILMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 258 -----~i~~~~vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+ . ........+... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~---~~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--E---RAEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--H---HHHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--H---HHHHHHHHHHcC-CCCceecCHHH
Confidence 7789999999987 6888999999999999999999998764321 1 111122222222 23567889999
Q ss_pred HHHHHHHcCCceee
Q 018145 332 YTELAIAAGFKGIN 345 (360)
Q Consensus 332 ~~~ll~~aGf~~~~ 345 (360)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999998 777653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=91.66 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------------CCCcEEEecCCCCC---CCC-Cc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~---~~~-~D 257 (360)
.++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|++ .+|++++.+|..+. .++ .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999999998666678888888 889998874 26899999999872 222 39
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 258 AILMKWILH---CWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 258 ~i~~~~vlh---~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+|++-..-. ....-....+++.+++.|+|||.+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999863210 0111223578999999999999988763
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-08 Score=82.14 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=77.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G-- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~-- 256 (360)
.++..+. ++++.+|||||||+|+.+.-+++--. +++.++. +...+.|+++ .+|.++.+|-..-+++ +
T Consensus 63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence 4455555 78889999999999999998888765 7777776 7888887653 5699999999885554 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|+.....-..|. .+.+.|||||++++-.-
T Consensus 140 D~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999888776653 45668999999999665
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=90.30 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=73.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---E 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---~ 255 (360)
.+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +.+++.|++. +++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 3444444 566789999999999999999998764 46888888 8887776542 468999999876322 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 39999986655432 34677899999998854
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=88.88 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=81.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~vl 265 (360)
.++.+|||||||||-++...++.. ..+++++|+ |.+++.|+++ .++.+. . ..+.+. .|+|+.+- +
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI-~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANI-L 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECC-C
Confidence 456899999999999999877753 457888888 8888877653 344432 1 123322 39998753 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.+-...++..+.+.|+|||+|++.-.... ..+++.+.+++ ||++++
T Consensus 235 ----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-----------------------------~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKPGGYLILSGILEE-----------------------------QEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHT-TEEEEE
T ss_pred ----HHHHHHHHHHHHHhhCCCCEEEEccccHH-----------------------------HHHHHHHHHHC-CCEEEE
Confidence 23567889999999999999999765431 23456677776 999888
Q ss_pred EEecCC
Q 018145 346 FASCVC 351 (360)
Q Consensus 346 ~~~~~~ 351 (360)
....++
T Consensus 281 ~~~~~~ 286 (295)
T PF06325_consen 281 EREEGE 286 (295)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 876543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=83.03 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=81.4
Q ss_pred CcceEEEEcCCcc----hHHHHHHhhCC-----CCeEEEecc-hhHHHhCCCC---------------------------
Q 018145 197 NVERLVDVGGGFG----VTLSMITSKYP-----QIKAVNFDL-PHVVQDAPSY--------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 239 (360)
++-+|.-.||+|| .++..+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 56667777775 467788888 8888887641
Q ss_pred --------CCcEEEecCCCCC--CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 --------AGVEHVGGNMFES--VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 --------~~v~~~~~d~~~~--~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|.|..+|..++ .+.. |+|+|.+||-+++.+.-.+++++.+..|+|||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2388999999883 3444 99999999999998888999999999999999999954
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-07 Score=82.95 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=88.1
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEecc-----ccc
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKW-----ILH 266 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~~~-----vlh 266 (360)
+|||||||+|..+..++..+|+.+++++|+ |.+++.|+.+ .++.++.+|.+++.... |+|+++= -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 8888877653 34667777888865544 8887731 100
Q ss_pred cCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 267 CWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 267 ~~~------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
+.. -+-..+++..+.+.|+|||.+++ |... . .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------~------q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------T------Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------C------c
Confidence 010 12355788888999999777665 3211 1 2
Q ss_pred HHHHHHHHHHcC-CceeeEEecCCc
Q 018145 329 KKEYTELAIAAG-FKGINFASCVCN 352 (360)
Q Consensus 329 ~~e~~~ll~~aG-f~~~~~~~~~~~ 352 (360)
.+.+.+++.+.| |..+.+.....+
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCC
Confidence 456788999999 676666665543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.3e-08 Score=83.80 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=86.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHh-hCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-CC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITS-KYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VP 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~~ 254 (360)
...|+.... ..++.+|+|.|.|+|.++..|+. ..|..+++.++. ++..+.|+++ ++|++..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345666665 88999999999999999999997 457789999998 7888877653 5699999999883 33
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 255 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+. |+|++ +++++ -.+|.+++++|||||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 34 99988 56655 4689999999999999999887653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=89.39 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCC---CCC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES---VPE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~-~D~i~ 260 (360)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++. ++++++.+|..+. .++ .|+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999998776677888888 7787766542 5788888887651 223 39999
Q ss_pred eccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 261 MKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
+...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 457899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=82.01 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=92.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCC-CcEEEeccccccCChhHHHH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE-GDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~-~D~i~~~~vlh~~~~~~~~~ 275 (360)
...++||||.|.|..+..++..+..+.+|-.. +.|...-++ .+++++..|-....+. .|+|.|.++|-.-. +...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~--~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCD--RPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccC--CHHH
Confidence 45789999999999999999998886665555 777666554 3456555544433332 39999999997754 3468
Q ss_pred HHHHHHHhCCCCcEEEEEeeecCCC----CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 276 ILKNCYKAVPGNGKVIVMNSIVPEI----PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 276 ~L~~i~~~LkpgG~lli~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+|+.++++|+|+|++++.-..+-.. ....... ....++ ..+..-+-....+.+.|+.+||++++....|
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~-P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNR-PSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCC-chhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 9999999999999999855332111 0000000 000111 1101111122334489999999999998776
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-08 Score=82.39 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=68.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEe-------cCCCCCC--CCC-cEEEeccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-------GNMFESV--PEG-DAILMKWILH 266 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~d~~~~~--~~~-D~i~~~~vlh 266 (360)
...++|||||+|..++-++..+.+ +++.|. +.|++.++++++++... .++.+-. ++. |+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 348999999999888888888766 566666 89999998876544333 2222211 233 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+++ ..++.+.++++|||.|.++.+-..
T Consensus 112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 112 WFD---LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhc---hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 876 457899999999987744444333
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-08 Score=85.43 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=73.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~- 255 (360)
...+++.+. ++++.+|||||||+|+.+..++.... ..+++.+|. +..++.|+++ .+|.++.+|.....+.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345666666 78889999999999999998888753 446788887 8888887653 5799999998774443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ |.|++.......|. .+.+.|++||+|++--.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 2 99999888865442 35667999999998443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-08 Score=64.99 Aligned_cols=49 Identities=55% Similarity=0.792 Sum_probs=41.1
Q ss_pred HHHHHHHhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 39 MATQAAIQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
.++++|++|||||.|++.| ++|++||+.++..++|.++..++|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4789999999999999975 999999999999436657778999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=82.35 Aligned_cols=98 Identities=13% Similarity=0.199 Sum_probs=75.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------C-CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------P-EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~-~~ 256 (360)
..++.+|||||||+|..+..+++..| +.+++.+|. ++.++.|+++ ++++++.+|+.+.. . ..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998875 679999998 7777777653 57999999997621 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++-. ..+.-..++..+.+.|+|||.+++-+..+
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9998842 22344578999999999999887755444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.3e-08 Score=93.56 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCCC---CCCC-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFES---VPEG- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~---~~~~- 256 (360)
+++.+|||||||+|..+..+++. |. .+++.+|+ |++++.++++ +|++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45789999999999999999974 55 68899998 9999988761 5899999998772 2333
Q ss_pred cEEEeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 DAILMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 D~i~~~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++...-...+.. -..++++.+++.|||||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999986433221111 12368999999999999988754
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-08 Score=79.68 Aligned_cols=103 Identities=9% Similarity=0.233 Sum_probs=69.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
+.+++.+. ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 34555555 566789999999999999999998 467788887 7777766543 579999999998 55543 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.|+++--. +.+.+...++++.. .+.++|.+++..
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 88765444 34433333343321 134667766544
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=89.51 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=79.3
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC---CC-C-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VP-E-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~~-~-~ 256 (360)
++..++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++.+|+.+. .+ . .
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 334444 56678999999999999999999988788999998 8888777543 2478999998762 22 2 3
Q ss_pred cEEEe----cc--cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILM----KW--ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~----~~--vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|.|++ +. ++.+ ...++ ..++|+++.+.|||||++++.+...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99984 21 1211 12222 2478999999999999999888544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=89.17 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=80.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCC-CC--C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFE-SV--P- 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~-~~--~- 254 (360)
.++..++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ . ++.+..+|... +. +
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3444454 56678999999999999999999888788999998 7777766542 1 23446677655 22 2
Q ss_pred C-CcEEEe------ccccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 255 E-GDAILM------KWILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 255 ~-~D~i~~------~~vlh~~~~-------~~-------~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
. .|.|++ ..+++..|+ ++ -.++|+++.+.|||||+|+..+....
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 399985 345665443 11 25799999999999999999887664
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=78.97 Aligned_cols=96 Identities=16% Similarity=0.278 Sum_probs=72.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC--CCCCC--cEEEeccccccC--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE--SVPEG--DAILMKWILHCW-- 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~~~--D~i~~~~vlh~~-- 268 (360)
.+.-|||||||+|-.+..+... ....+++|+ |.|++.|.+. -.-+++.+|+-+ +++.+ |.+++...++++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 4789999999999888777665 477899999 9999998752 113588888877 55555 888776665543
Q ss_pred -------ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 269 -------DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 269 -------~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|......++..++..|++|++.++.=
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 33445577899999999999988743
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=88.34 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred hhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CCC-Cc
Q 018145 190 EHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VPE-GD 257 (360)
Q Consensus 190 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~~-~D 257 (360)
..+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+|+++.+|+.+. ++. .|
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 3444 5567899999999999999999986 6789999998 7777766542 3589999998762 333 39
Q ss_pred EEEecc------cccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 258 AILMKW------ILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 258 ~i~~~~------vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+|++.- ++.+ ++..+ ...+|+.+.+.|||||+|+......
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 998631 1211 11122 2468999999999999998766443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.6e-07 Score=87.99 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-CcEEEec--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-GDAILMK-- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~D~i~~~-- 262 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45668999999999999998888764 468999998 8888776543 458999999877323 2 3999851
Q ss_pred ----ccc-------ccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 263 ----WIL-------HCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 263 ----~vl-------h~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.++ ++++++++ .++|.++.+.|||||+|+..+....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 122 12333332 3689999999999999999886553
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=78.67 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=69.1
Q ss_pred cceEEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEeccccccCCh
Q 018145 198 VERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~ 270 (360)
..+|||+|||+|.++..+++.. +..+++++|+ +.+++.|++. .++.++.+|+.. +.+.. |+|+++=-++....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 3568888888 8899988765 679999999987 44333 99998644442211
Q ss_pred ----------hHHHHHHHHHHHhCCCCcE
Q 018145 271 ----------DHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 271 ----------~~~~~~L~~i~~~LkpgG~ 289 (360)
.-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1244689999997777663
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=81.55 Aligned_cols=126 Identities=15% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP-- 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~-- 254 (360)
.|+..++ ..++.+|||.|.|+|.++..|++. .|..++.-+|. ++..+.|++. .+|++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4566666 888999999999999999999975 58889999998 7777766542 579999999965 332
Q ss_pred --CC-cEEEeccccccCChhHHHHHHHHHHHhC-CCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 255 --EG-DAILMKWILHCWDDDHCLRILKNCYKAV-PGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 255 --~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~L-kpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
.. |.|++ ++|++. ..+..+.++| ||||++++.-++... ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 23 99887 566554 5799999999 899999987765421 11
Q ss_pred HHHHHHHHcCCceeeEEec
Q 018145 331 EYTELAIAAGFKGINFASC 349 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~ 349 (360)
...+.|++.||..++++.+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 2345667789988887665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-07 Score=80.11 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=69.1
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCCC----CCCC--cEEEecccc
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFES----VPEG--DAILMKWIL 265 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~~~~--D~i~~~~vl 265 (360)
..+||||||.|.++..+++.+|+..++++|. ...+..+.. ..++.++.+|+..- ++++ |-|++.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999998 555554432 37899999998871 3433 777664322
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 266 HCWDDDH------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 266 h~~~~~~------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-+..... ...+|..+++.|+|||.|.+..-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 2111111 24789999999999999988663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-07 Score=91.97 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=53.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------------------CCcEEEecCCCCCCC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------------------AGVEHVGGNMFESVP 254 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~d~~~~~~ 254 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+.+ +||+++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 8888766321 369999999988543
Q ss_pred C----CcEEEec
Q 018145 255 E----GDAILMK 262 (360)
Q Consensus 255 ~----~D~i~~~ 262 (360)
. .|+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 2 3888773
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=86.97 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=79.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C----CCC
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S----VPE 255 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~----~~~ 255 (360)
...+. ..++.+|||+|||+|..+..+++... ..+++++|. +.+++.++++ .+|+++.+|+.+ + ...
T Consensus 245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 33344 56678999999999999999998864 468999998 7777766542 458999999876 3 112
Q ss_pred --CcEEEec------cccccCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 --GDAILMK------WILHCWDD-------DH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 --~D~i~~~------~vlh~~~~-------~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|.|++- .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3999862 45554443 11 2578999999999999999877544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=70.27 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=86.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC-CCCcEEEecCCCC-C--CC---CC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFE-S--VP---EG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~--~~---~~- 256 (360)
..++.++ +..+.-|||+|.|+|.++.+++++. ++-..+.++. ++......+ .+.+++++||.++ . .. ..
T Consensus 39 ~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 39 KMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 3344444 6777899999999999999999976 4445555555 666665544 4889999999987 3 22 22
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|.|++.--+-.+|.....++|+.+...|++||.++-....
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999999998999888999999999999999999988876
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-07 Score=77.47 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=68.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------------CCCcEEEecCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNMF 250 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~~ 250 (360)
.+++.+. +.+...++|||||.|......+-..+--+++++++ +...+.|.. ..++++..+|+.
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4555555 66788999999999999988887776666899987 555443321 246899999998
Q ss_pred C-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 251 E-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 251 ~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+ + +.++|+|++++... + ++...-|.+....||||.+++...+..+..
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 7 3 23569999998864 3 455566688888999999988776666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-07 Score=82.17 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=71.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------C----CcEEEecCCCCC-----C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------A----GVEHVGGNMFES-----V- 253 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~d~~~~-----~- 253 (360)
++.+|||+|||.|.-+....... -..++++|+ +..++.|+++ . ...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999998888777752 346889998 6677766532 1 246788888752 2
Q ss_pred CC--C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 254 PE--G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 254 ~~--~-D~i~~~~vlh~~--~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+. . |+|-+.++||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999983 455677899999999999999998664
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-07 Score=78.97 Aligned_cols=103 Identities=15% Similarity=0.198 Sum_probs=74.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC--CCCcEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV--PEGDAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~--~~~D~i~~~- 262 (360)
.+++.+|||+|||+|..+..+++...+ ..++.+|. +..++.++++ .+|+++..|... +. +..|+|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 456789999999999999999988754 58899998 7777666542 458888888765 22 234999861
Q ss_pred -----ccccc-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 -----WILHC-------WDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 -----~vlh~-------~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++.. +.+++. .++|+++.+.|||||+|+..+...
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 22221 222222 469999999999999998776544
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=71.27 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=90.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCC---C--cEEEeccccccCCh-
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDD- 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~---~--D~i~~~~vlh~~~~- 270 (360)
..++|||||=+....+. .++-..++.+|+.+.. -.+...||++ |+|. . |+|.++.||.++|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999976654433 3455567888863311 2466788888 7762 2 99999999999995
Q ss_pred hHHHHHHHHHHHhCCCCcE-----EEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 271 DHCLRILKNCYKAVPGNGK-----VIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
.++-.+++++++.|+|+|. |+|+-|..- . .+.+..+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------------v-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------------V-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------------h-hcccccCHHHHHHHHHhCCcEEEE
Confidence 4677999999999999999 877754321 1 266677889999999999999998
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 86654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=82.63 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C-C-CC-CcEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S-V-PE-GDAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~-~-~~-~D~i~~- 261 (360)
..++.+|||+|||+|..+..+++.. +..+++.+|+ +..++.++++ ..++++.+|..+ + . ++ .|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999886 4578999998 7777776543 357899999876 2 2 22 399986
Q ss_pred -----cccccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 262 -----KWILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 262 -----~~vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
..++.. ++.++ -.++|.++.+.|||||+++.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 222322 22211 25679999999999999888776553
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-07 Score=74.26 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=66.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCC-----CC--CcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV-----PE--GDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~-----~~--~D~ 258 (360)
..++.+|||+|||+|..+..+++..+..+++..|.+++++..+. ..++.+...|..++. .. .|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999888877788999998556554322 256888888765521 22 399
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+.+.++++ ++....+++.+.+.|+|+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5678899999999999999988777655
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=76.03 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=70.6
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----C--CCcEEEecCCCC---C-CCCC--cEEEecccc
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y--AGVEHVGGNMFE---S-VPEG--DAILMKWIL 265 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~d~~~---~-~~~~--D~i~~~~vl 265 (360)
..+||||||.|.+...+++.+|+..++++++ ...+..+.+ . .++.++++|+.. . ++.+ |-|++.+-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 444443322 1 489999999876 2 4443 777664322
Q ss_pred ccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDH-------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~-------~~~~L~~i~~~LkpgG~lli~e 294 (360)
- |+-.. ...+|+.+.+.|+|||.|.+.+
T Consensus 130 P-WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 P-WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 2 22111 1368999999999999999866
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.8e-07 Score=76.81 Aligned_cols=98 Identities=16% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-------C--CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-------P--EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-------~--~~ 256 (360)
..++.+|||||+++|.-+..+++..| +.+++.+|. |+..+.|++. ++|+++.+|+.+.+ + ..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34678999999999999999999987 589999998 7777776542 58999999987521 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++-. ...+-...+..+.+.|+|||.+++-+..+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9999854 23345678999999999999888766554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=79.75 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCC---CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESV---PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~---~~~-D~i~ 260 (360)
+++.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++. +|++++.+|..+.+ ++. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678888888 8888888642 68999999988722 223 9999
Q ss_pred eccccccC---Chh--HHHHHHH-HHHHhCCCCcEEEEE
Q 018145 261 MKWILHCW---DDD--HCLRILK-NCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~---~~~--~~~~~L~-~i~~~LkpgG~lli~ 293 (360)
+-.. ..+ +.. --..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8521 111 000 0235787 899999999998764
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=76.12 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=76.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~-~D~i~ 260 (360)
+.+.+||-||+|.|.+++++++..+--+++.+|+ |.+++.+++. +|++++.+|..+ ..+. .|+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3447999999999999999999998888999998 9999988763 789999999887 2333 49999
Q ss_pred eccccccCCh-h--HHHHHHHHHHHhCCCCcEEEEE
Q 018145 261 MKWILHCWDD-D--HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 261 ~~~vlh~~~~-~--~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+-..=.- .+ + --..+++.++++|+|+|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8543221 11 0 1257899999999999999987
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=75.67 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=75.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D 257 (360)
.++..-.++ .+..|||||||+|.++.-.+++. ..++..++..+|.+.|++. +||.++.|.+.+ ++|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443323 35899999999999998766664 4567777777888887652 789999999999 88876 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++++--.=..+-++...+.--.+++.|||.|+.+=
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99874433333345555555677899999998763
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=76.98 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------C-CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------P-EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~-~~ 256 (360)
..++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++. ++|+++.||+.+.+ . ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999999875 567888888 7777777542 58999999987621 1 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|+|++-. +...-..++..+.+.|+|||.+++-+..+.
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 9998843 234567889999999999999887555443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=74.09 Aligned_cols=100 Identities=12% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEe-cCCCCCC----CC-CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVG-GNMFESV----PE-GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~d~~~~~----~~-~D~i 259 (360)
..++.+|||||.+.|.-+..++...| +.+.+.+|. |+..+.|+++ ++|+++. +|..+.+ .+ .|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999998 8888888763 5688888 5877622 12 2999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++-. ...+-+.+|..+.+.|+|||.+++-+...+.
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 8843 2334468899999999999988876665543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=83.80 Aligned_cols=127 Identities=19% Similarity=0.245 Sum_probs=80.1
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccC---CCcceEEEEcCCcchHHHHHHhhC----CCCeEEEecc-
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF---QNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDL- 229 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~- 229 (360)
..|+.+++++.....|.+++.. .+.+..... .+...|+|||||+|-++...+++. ...+++.++.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3578888888888888776532 222322211 135789999999999987766654 4577888876
Q ss_pred hhHHHhC----CC---CCCcEEEecCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 230 PHVVQDA----PS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 230 ~~~~~~a----~~---~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
|.++... +. .++|+++.+|+.+ ..|+- |+|++-..=.....+-....|....+.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4433222 11 2689999999999 66754 99987333222223445567888999999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-06 Score=76.59 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=92.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEec----CCCCCC--CC--CcEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESV--PE--GDAI 259 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----d~~~~~--~~--~D~i 259 (360)
...++||||||+|.....++.+.++.+++++|+ +.+++.|+.. .+|++... +++... +. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 458999999999999888888888999999998 8888877642 35776542 333322 22 2999
Q ss_pred EeccccccCChhH---HHHHHHHH----------------HHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh
Q 018145 260 LMKWILHCWDDDH---CLRILKNC----------------YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR 320 (360)
Q Consensus 260 ~~~~vlh~~~~~~---~~~~L~~i----------------~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (360)
+++==+|.-..+. ...-.+++ .+.+.+||.+-++..+..+. . .+..-..++.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS-----~-~~~~~~gwft--- 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES-----K-AFAKQVLWFT--- 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH-----H-HHHhhCcEEE---
Confidence 9987777533221 11122222 24455778777776655432 0 0000011110
Q ss_pred cCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 321 DGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 321 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+.-++.-+...+.+.|++.|.+.++++++.
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 112455589999999999999888888775
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.7e-06 Score=64.29 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=70.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcch-HHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGV-TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAIL 260 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~ 260 (360)
.+.+.++ ..++.+|||||||+|. .+..|.+. +..++++|. |..++.+++ ..++++.+|++++-+ ++ |+|+
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 4555555 3445899999999996 77777765 567888887 888887765 358999999999543 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+ |+.+...-+.++.+..+ .-++|...
T Consensus 83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l 110 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPL 110 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 865 56677778888888764 45555443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=76.44 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=77.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC----CCeEEEecc-hhHHHhCCC------CCCcEE--EecCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP----QIKAVNFDL-PHVVQDAPS------YAGVEH--VGGNMFES 252 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~d~~~~ 252 (360)
..|+..++ ++..|+|+|||+|.=+..|++.+. ..+++.+|+ .+.++.+.+ .+.+++ +.+|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45666543 456899999999988887777663 467999998 455554432 255665 78888662
Q ss_pred ---CC-----CC-cEE-EeccccccCChhHHHHHHHHHHH-hCCCCcEEEE
Q 018145 253 ---VP-----EG-DAI-LMKWILHCWDDDHCLRILKNCYK-AVPGNGKVIV 292 (360)
Q Consensus 253 ---~~-----~~-D~i-~~~~vlh~~~~~~~~~~L~~i~~-~LkpgG~lli 292 (360)
.+ .. .++ ++.+.+.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 21 12 455 56789999999999999999999 9999999888
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=75.27 Aligned_cols=82 Identities=12% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCCCc--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGD-- 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D-- 257 (360)
..+++.++ ..++.+|||||||+|.++..+++..+. ++++|. +.+++.+++ .++++++.+|+.+ +.+..|
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~ 95 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQ 95 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCc
Confidence 45555555 566789999999999999999999876 555565 777766653 2679999999988 555334
Q ss_pred EEEeccccccCCh
Q 018145 258 AILMKWILHCWDD 270 (360)
Q Consensus 258 ~i~~~~vlh~~~~ 270 (360)
.+++++.=++++.
T Consensus 96 ~~vvsNlPy~i~~ 108 (253)
T TIGR00755 96 LKVVSNLPYNISS 108 (253)
T ss_pred ceEEEcCChhhHH
Confidence 3333444444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=74.96 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=77.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChh-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD- 271 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~- 271 (360)
.+..++|+|||.|.+... +|.+..+++|+ ...+.-+++.+.......|+.+ +.++. |..+...++||++..
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 478999999999987643 58889999998 6666767665554677888888 66543 999999999999865
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
....+++++.+.++|||..+|.-+.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 4568899999999999998875543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=74.88 Aligned_cols=111 Identities=12% Similarity=0.259 Sum_probs=78.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC----CCcEE--EecCCCC---CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----AGVEH--VGGNMFE---SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~d~~~---~~~ 254 (360)
.++...++ .-.+.+|||+|+|.|..+-+..+.++.. +++.+|. +.+.+.++.. ..... ...++.. +++
T Consensus 23 ~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 34555555 3356899999999999888888888754 5788887 7777765432 11110 1111111 233
Q ss_pred CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 255 EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 255 ~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
..|+|+++++|..+++.....+++++.+.+.+ .|+|+|+..+.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 44999999999999998888999999888876 99999986654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-06 Score=73.45 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=59.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCCCcE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEGDA 258 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D~ 258 (360)
...+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345555554 5567899999999999999999984 46777777 777776654 2679999999988 6665688
Q ss_pred EEeccccc
Q 018145 259 ILMKWILH 266 (360)
Q Consensus 259 i~~~~vlh 266 (360)
|+++--.+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 87765543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6e-06 Score=72.96 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCC-CCCcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESV-PEGDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~-~~~D~i~~~~ 263 (360)
+.+.+||=||||.|..++++++. |. +++.+|+ +.+++.+++. +|++++.. +.+.. ...|+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999997 44 8888888 8899888762 78888762 22222 2349999864
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. .+ ....+.++++|+|||.++..-
T Consensus 148 ~----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 3 12 467899999999999998753
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-06 Score=74.36 Aligned_cols=74 Identities=11% Similarity=0.246 Sum_probs=55.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~ 258 (360)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +.++. |.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555554 56678999999999999999999976 6677776 8888877653 589999999988 55443 55
Q ss_pred EEec
Q 018145 259 ILMK 262 (360)
Q Consensus 259 i~~~ 262 (360)
|+.+
T Consensus 109 vv~N 112 (272)
T PRK00274 109 VVAN 112 (272)
T ss_pred EEEe
Confidence 5554
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-06 Score=80.00 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=70.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEe---cc-hhHHHhCCCCCCcEEEecCC--CC-CCCCC--cEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNF---DL-PHVVQDAPSYAGVEHVGGNM--FE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~d~--~~-~~~~~--D~i~~~~vlh 266 (360)
...+.+||||||+|.++..++++ ++..+-+ |. +..++.|.++ +|..+-+-+ .. |+|+. |+|-++.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhcccccc
Confidence 34579999999999999999988 4443332 22 3344444332 243333332 12 77765 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.|.+.+ ..+|-.+.|+|+|||++++.-+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 998765 4689999999999999998776543
|
; GO: 0008168 methyltransferase activity |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=70.14 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC--CC--CcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV--PE--GDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~--~~--~D~i~~~~vl 265 (360)
.+.+|||+|||+|.++...+.+. ..+++++|. +.+++.++++ .+++++.+|+.+.. .. .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 357888887 7777766542 46899999987632 22 3999986543
Q ss_pred ccCChhHHHHHHHHHHHh--CCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKA--VPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~--LkpgG~lli~e 294 (360)
+. .-...+++.+.+. |+|++.+++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 22 1233455555553 78888776644
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=68.47 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCC----CCCCC--CC--cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNM----FESVP--EG--DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~----~~~~~--~~--D~i 259 (360)
..+..+||+|||+|..+..++...|+++++.+|. +.++..|.++ +++..++.++ +.+.+ .+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 6666665542 6787775544 43332 33 777
Q ss_pred Eec--cccccC----------------------ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMK--WILHCW----------------------DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~--~vlh~~----------------------~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+++ ++.+.= .-+....++.-+.|.|+|||.+.+--.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 763 222210 002234567778899999998887443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.3e-06 Score=79.94 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-----
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES----- 252 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~----- 252 (360)
.+.+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444444 4566899999999999999999885 57888998 8888887653 4689999998652
Q ss_pred CC-C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 VP-E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 ~~-~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+ . .|+|++.- |-......++.+.+ ++|++.+++.-
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 22 2 29998732 11123345655555 68888777643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-06 Score=72.04 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------C----CcEEEecCCCCC-----C--C-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------A----GVEHVGGNMFES-----V--P- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~d~~~~-----~--~- 254 (360)
++...++|+|||-|.-+...-++. --.++++|+ ...+++|+.+ . .+.|+.+|.+.. + +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 567889999999999887776652 235799998 5567777653 1 267888887651 2 2
Q ss_pred -CCcEEEecccccc-CC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 -EGDAILMKWILHC-WD-DDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 -~~D~i~~~~vlh~-~~-~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|-|.+++|+ |. .+.+..+|+++.+.|||||+++-.-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 2499999999998 43 5567789999999999999988643
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=66.55 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=94.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CC--cEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AG--VEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~--v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
....++|||||-|.....+..+. =-+.+..|. ..|++.++.. +. +....+|-.. ++.+. |+|+.+..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 35689999999999999988875 235677887 7788888765 44 3455666554 56554 999999999975
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC------CHHHHHHHHHHcCCc
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER------TKKEYTELAIAAGFK 342 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 342 (360)
+ +.+.-+.+++.+|||+|.++-.-..-+. .++ ......+..+-. .||... ...++-.+|..|||.
T Consensus 151 N--dLPg~m~~ck~~lKPDg~FiasmlggdT-----LyE-LR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 N--DLPGSMIQCKLALKPDGLFIASMLGGDT-----LYE-LRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred c--cCchHHHHHHHhcCCCccchhHHhcccc-----HHH-HHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 4 5678899999999999987753322111 111 111222222211 133221 346788999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
...+-
T Consensus 222 m~tvD 226 (325)
T KOG2940|consen 222 MLTVD 226 (325)
T ss_pred cceec
Confidence 76663
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.4e-06 Score=67.97 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC----------------CCcEEEecCCCCCC-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY----------------AGVEHVGGNMFESV-P 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~d~~~~~-~ 254 (360)
+.++.+.||||+|+|.++..+..-. +....++++. |+.++.++++ .++.++.||-..-. +
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5678999999999999998887543 3333478887 8888877642 46889999988733 3
Q ss_pred C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
. .|.|.+.-. +.++.+++..-|+|||+++|
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence 2 399988632 34567788889999999998
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-06 Score=72.06 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC----------CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV----------PE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~----------~~ 255 (360)
..++.+||+||+++|.-+..+++..| +.+++.+|. ++..+.|++. ++|+++.||+.+.+ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45678999999999999999999874 678888888 7666666542 68999999987621 12
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|+|++-.- ...-...+..+.+.|+|||.+++-+..+
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 299988532 2345678899999999999977644443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.3e-06 Score=73.84 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~-~-D~i 259 (360)
+++.+||-||+|.|..+..+++..+-.+++++|+ |.+++.+++. +|++++.+|... ...+ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999999999998776678888888 8888887652 689999999876 3334 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.-..-...+... ...+++.+++.|+|||.+++.-.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8733221111111 25789999999999999998763
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-05 Score=65.39 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=83.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHH-hCCCCCCcE-EEecCCCC----CCC-C--
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQ-DAPSYAGVE-HVGGNMFE----SVP-E-- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~d~~~----~~~-~-- 255 (360)
..+++.++...++.+|||+|||+|.++..+++. +..+++++|. +.++. ..++.+++. +...|+.. +++ +
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence 345555442235679999999999999999986 4567899998 54554 455556654 33334432 111 1
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE-EEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC------
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI-VMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER------ 327 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 327 (360)
.|+.+++.. .+|..+.+.|+| |.++ ++-|-+.-.+.. ...+|-.+
T Consensus 143 ~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~----------------~~~~giv~~~~~~~ 195 (228)
T TIGR00478 143 TFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK----------------KNKKGVVRDKEAIA 195 (228)
T ss_pred eeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh----------------cCcCCeecCHHHHH
Confidence 276666543 247889999999 5554 444433221100 00122222
Q ss_pred -CHHHHHHHHHHcCCceeeEEecC
Q 018145 328 -TKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 328 -t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
-.+++...+.+.||++..+.+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 196 LALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHcCCCeEeeEEECC
Confidence 24566777888899998888775
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=72.24 Aligned_cols=88 Identities=15% Similarity=0.323 Sum_probs=62.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~ 256 (360)
..+++... ..++.+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~ 102 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYF 102 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccccc
Confidence 45555555 56678999999999999999998754 4666666 777776653 2579999999988 55555
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L 277 (360)
|+|+++ .=++++.+-..++|
T Consensus 103 d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 103 DVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred CEEEec-CCcccCcHHHHHHH
Confidence 877764 34445555444444
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.9e-06 Score=82.63 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=70.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCC---CCC-CcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES---VPE-GDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~---~~~-~D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++. ...+++.+|+ +.+++.++++ .+++++.+|+++. .+. .|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999986 3446899998 8888877652 3689999998762 223 39999831
Q ss_pred ---cc----cc-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 264 ---IL----HC-W-DDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 264 ---vl----h~-~-~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.- .. + ...+-..+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 00 00 0 1223467899999999999988764
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=59.85 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=83.7
Q ss_pred cceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CC-cEEEeccccccC
Q 018145 198 VERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMKWILHCW 268 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~~ 268 (360)
+.-++|||||+|..+..+.+.. |+..+...|+ |.+++..++. .++..+..|....+. +. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999998888765 7888899998 8777764331 346777788777322 33 887775322111
Q ss_pred Chh-------------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCH
Q 018145 269 DDD-------------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 329 (360)
Q Consensus 269 ~~~-------------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 329 (360)
+++ -..++|..+-..|.|.|.++++-.... ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 111 133566666677777777776553211 24
Q ss_pred HHHHHHHHHcCCceeeEEecC---CceeEEEEe
Q 018145 330 KEYTELAIAAGFKGINFASCV---CNLYIMEFF 359 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~ 359 (360)
+|+-+.++.-||.......-. ...+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 556667777788765544322 345555554
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-05 Score=73.79 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=68.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC------C-CCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------P-EGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~------~-~~D~i 259 (360)
.++.+|||+|||+|.++...+.. +..+++.+|. +.+++.++++ .+++++.+|+++.. . ..|+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34689999999999998776543 3458899998 8888877642 26889999998721 1 23999
Q ss_pred EeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 260 LMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 260 ~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
++.---..-+. ..-..+++.+.+.|+|||.|+...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98522110011 123456677899999999999755
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=71.91 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCC-CC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVP-EG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~-~~-D~i~~~~vl 265 (360)
-+...|||||||+|-++.--+++. ..+++++|-.++.+.|.+. +.|+++.+.+.+ .+| +- |+|++-+.=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 346899999999999998877776 6788888877777666542 458999999988 677 44 999875544
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+.+- +.-...+|-.=-+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4322 2234445555568999999875
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=72.27 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=50.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCC-CcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPE-GDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~-~D~i~~~ 262 (360)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++. .+++|+.+|+.+ . ... .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999985 467899998 8888877643 468999999976 2 222 3999885
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=76.09 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=70.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-CC-----CCCcEEEecCCCC---CCCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-PS-----YAGVEHVGGNMFE---SVPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~d~~~---~~~~~--D~i~~~~v 264 (360)
....+||||||.|.++..+++.+|+..++++|. ...+..+ +. ..++.++.+|+.. .++.+ |.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457999999999999999999999999999998 3333322 11 2578888887642 35544 88777543
Q ss_pred cccCChhH-------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDH-------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~-------~~~~L~~i~~~LkpgG~lli~e 294 (360)
=- |+... ...+|+.+++.|||||.+.+..
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 22110 2478999999999999999865
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=63.16 Aligned_cols=90 Identities=12% Similarity=0.328 Sum_probs=63.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC----CCCcEEEecCCCC-CCCC--C-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE--G- 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~d~~~-~~~~--~- 256 (360)
.+.|++... ..++.+|||||+|.|.++..|++....+.++-.| +.+++..++ .++++++.+|+.+ ++++ .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 456777666 5567899999999999999999998887777777 555544333 4789999999999 7775 3
Q ss_pred cEEEeccccccCChhHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L 277 (360)
+.|+. +.=++.+.+-..++|
T Consensus 97 ~~vVa-NlPY~Isspii~kll 116 (259)
T COG0030 97 YKVVA-NLPYNISSPILFKLL 116 (259)
T ss_pred CEEEE-cCCCcccHHHHHHHH
Confidence 55554 333344444333333
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.8e-05 Score=73.15 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-----CC-C-CcEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-----VP-E-GDAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~-----~~-~-~D~i~ 260 (360)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+. .. . .|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 46888888 8888887653 5799999998652 11 2 29988
Q ss_pred eccccccCChhH-HHHHHHHHHHhCCCCcEEEE
Q 018145 261 MKWILHCWDDDH-CLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 261 ~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli 292 (360)
+.-- ... ...+++.+. .++|++.+++
T Consensus 368 ~dPP-----r~G~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 368 LDPP-----RKGCAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred ECcC-----CCCCCHHHHHHHH-hcCCCEEEEE
Confidence 6321 111 235566555 4889876665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=60.53 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~i~~~ 262 (360)
-.+.+|+|+|||||.+++..+-.. -.+++++|+ |++++.++++ .+|+|+..|+.+.....|.++++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 346789999999999998765544 356677776 9999888765 47999999988744444777764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00045 Score=58.81 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=89.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC---CCCCC--cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SVPEG--DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~---~~~~~--D~i~ 260 (360)
.+.+.+|||.=.|-|+++++.+++.. .+++-++. |.+++.|+-+ .+++++.||..+ ++++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999888853 35555544 9999988754 358999999987 35543 8886
Q ss_pred e---ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 261 M---KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 261 ~---~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
- .+.+- ..-....+-++++|.|||||+++-........ . .|+. -.....+.|+
T Consensus 211 HDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------y-rG~d-~~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------Y-RGLD-LPKGVAERLR 266 (287)
T ss_pred eCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------c-ccCC-hhHHHHHHHH
Confidence 3 11110 11234678999999999999998544322110 0 1111 2356788999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||.+++.....
T Consensus 267 ~vGF~~v~~~~~~ 279 (287)
T COG2521 267 RVGFEVVKKVREA 279 (287)
T ss_pred hcCceeeeeehhc
Confidence 9999988877544
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0013 Score=58.31 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----h-hHHHhCCC-------------------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----P-HVVQDAPS------------------------------- 238 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~------------------------------- 238 (360)
....+||-=|||-|.++-++++..-.+.+.-+.. . -++....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3468999999999999999999743333322221 0 11111110
Q ss_pred --------CCCcEEEecCCCC-CCCC---C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 018145 239 --------YAGVEHVGGNMFE-SVPE---G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 304 (360)
Q Consensus 239 --------~~~v~~~~~d~~~-~~~~---~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~ 304 (360)
..++....|||.+ ..+. + |+|+.++.+- +.+.+...|+.|++.|||||..+=.-|..-..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~---- 208 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLLYHF---- 208 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCccccC----
Confidence 1357888999988 3222 2 9998887665 35678899999999999999555333332110
Q ss_pred hhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 305 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
-+.. ......-+.+.+|+.++.+..||++++...
T Consensus 209 --------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 --------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred --------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000123567999999999999999877654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.3e-05 Score=67.00 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=60.8
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-C--CC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-S--VP 254 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~--~~ 254 (360)
..+++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. |.+++.+++. ++++++.+|+.+ . .+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 3456777775 56678999999999999999999996 789999999 8999887653 479999999876 1 22
Q ss_pred C---C-cEEEe
Q 018145 255 E---G-DAILM 261 (360)
Q Consensus 255 ~---~-D~i~~ 261 (360)
+ . |.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 2 3 77765
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00049 Score=58.14 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=76.6
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecchhHHHhCCCCCCcEEEecCCCCC-C--------
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFES-V-------- 253 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~-~-------- 253 (360)
...+|.+.+.-++++.+|+|+|+..|.++..+++.... ..++++|+.++-. .++|.++.+|+.++ .
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence 34566666654678899999999999999988887644 5688889744432 35599999999873 1
Q ss_pred CCC--cEEEe---ccccccCC------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 254 PEG--DAILM---KWILHCWD------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 254 ~~~--D~i~~---~~vlh~~~------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.. |+|++ .++--++. .+-+...+.-+...|+|||.+++-.+.-
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 222 88875 21111111 2234566788888999999999877643
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00021 Score=61.10 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=83.8
Q ss_pred EEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEeccccccCC
Q 018145 201 LVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWILHCWD 269 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~---~D~i~~~~vlh~~~ 269 (360)
|.||||-+|.+...|++....-+++..|+ +..++.|++. ++|++..+|-++.++. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999998889999998 7777776542 6899999998875443 378877764 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
-.-...+|.+....++...+|++ .|. . ....++++|.+.||.+++-.-.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lIL-qP~------------------------~------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLIL-QPN------------------------T------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEE-EES------------------------S-------HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEE-eCC------------------------C------ChHHHHHHHHHCCCEEEEeEEE
Confidence 45677888887777765555554 221 1 3456889999999998776543
Q ss_pred C--Cc-eeEEEE
Q 018145 350 V--CN-LYIMEF 358 (360)
Q Consensus 350 ~--~~-~~vi~~ 358 (360)
. +. +-||.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 3 33 335544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.5e-05 Score=62.68 Aligned_cols=89 Identities=15% Similarity=0.275 Sum_probs=67.8
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-h---hHHHhCCC---CCCcEEEecCCCC-CCCCC-cEEEeccccccCCh
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDD 270 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~ 270 (360)
+++|||+|.|.-+.-++=.+|+.+++.+|. . ..++.+.. .++++++++.+.+ ..+.. |+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 2 23333322 2679999998887 33333 9999987642
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3568888999999999999865
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.8e-05 Score=62.45 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=65.8
Q ss_pred HHHHHhhcccCC--CcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCCC---------
Q 018145 185 MERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFES--------- 252 (360)
Q Consensus 185 ~~~i~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--------- 252 (360)
..++.+.++-++ ++.++||+||++|.++..++++. +..+++++|+.... ....+.++.+|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence 345566665222 45999999999999999999998 67889999984431 114455556665431
Q ss_pred CC---CC-cEEEeccccccC---------ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 253 VP---EG-DAILMKWILHCW---------DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 253 ~~---~~-D~i~~~~vlh~~---------~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.+ .. |+|++-.....- ..+-+...|.-+.+.|+|||.+++--..
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 23 888874421111 1123345566666779999998876543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0002 Score=60.63 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=60.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--C-CC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--P-EG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~-~~-D~i~~ 261 (360)
.+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++. ++++++.+|+++. . . .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357999999999999999999865 36888887 6666655442 3688999999652 1 1 22 77776
Q ss_pred ccccccCChhHHHHHHHHHH--HhCCCCcEEEEEee
Q 018145 262 KWILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~ 295 (360)
-=-... .....++..+. ..|+++|.++ +|.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv-~E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIV-VEE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEE-EEe
Confidence 322211 12234444443 3577777554 454
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0009 Score=55.34 Aligned_cols=140 Identities=18% Similarity=0.184 Sum_probs=83.4
Q ss_pred cCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHH-----------HhCCC--CCCcEEEecCCCC-CCCCC-c
Q 018145 194 GFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVV-----------QDAPS--YAGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 194 ~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~-----------~~a~~--~~~v~~~~~d~~~-~~~~~-D 257 (360)
+++++.+|+|+=.|.|+++.-+.... |.-.+..+-..+.. ..+++ ..+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999998777654 33333222111111 11111 1345555555444 33344 7
Q ss_pred EEEeccccccC-----ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCW-----DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~-----~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+++....-|++ ...-..++-+.++++|||||.+++.|+........ .+-. + .+ .+.....
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~dt~----~-~~-ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SDTI----T-LH-RIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hhhh----h-hc-ccChHHH
Confidence 77654333332 23456788999999999999999999876543211 1100 0 11 2255667
Q ss_pred HHHHHHcCCceeeEEe
Q 018145 333 TELAIAAGFKGINFAS 348 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~ 348 (360)
.+..+.+||+..--..
T Consensus 190 ~a~veaaGFkl~aeS~ 205 (238)
T COG4798 190 IAEVEAAGFKLEAESE 205 (238)
T ss_pred HHHHHhhcceeeeeeh
Confidence 7888889999765543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0041 Score=58.09 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=86.6
Q ss_pred CcceEEEEcCCcchHHHHH--------Hhh-------CCCCeEEEecchh--------HHHhCC------------CCCC
Q 018145 197 NVERLVDVGGGFGVTLSMI--------TSK-------YPQIKAVNFDLPH--------VVQDAP------------SYAG 241 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~--------~~~~a~------------~~~~ 241 (360)
+..+|+|+|||+|..+..+ .++ -|.+.+..-|+|. .+..-+ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999765432 222 2457777777751 111000 0011
Q ss_pred ---cEEEecCCCC-CCCCC--cEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 018145 242 ---VEHVGGNMFE-SVPEG--DAILMKWILHCWDD--D----------------------------------HCLRILKN 279 (360)
Q Consensus 242 ---v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~ 279 (360)
+.-+.|.|.+ -+|.. ++++++.+||+++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578887 57876 99999999999872 1 12334555
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCch--hhh-hh--hhhhHHHhhhcCCC--------------ccCCHHHHHHHHHHcC
Q 018145 280 CYKAVPGNGKVIVMNSIVPEIPEVSS--AAR-ET--SLLDVLLMTRDGGG--------------RERTKKEYTELAIAAG 340 (360)
Q Consensus 280 i~~~LkpgG~lli~e~~~~~~~~~~~--~~~-~~--~~~~~~~~~~~~~~--------------~~~t~~e~~~ll~~aG 340 (360)
=.+-|.|||++++.-..+++...... ... +. ...-+.-++ . .| -.++.+|+++.+++.|
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv-~-eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~g 300 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLV-Q-EGLVTSEKRDSFNIPVYAPSLQDFKEVVEANG 300 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHH-H-cCCCCHHHHhcccCcccCCCHHHHHHHHhhcC
Confidence 56779999999998877653211110 000 00 000111111 1 22 2258999999999988
Q ss_pred -CceeeEE
Q 018145 341 -FKGINFA 347 (360)
Q Consensus 341 -f~~~~~~ 347 (360)
|.+.++.
T Consensus 301 sF~I~~le 308 (386)
T PLN02668 301 SFAIDKLE 308 (386)
T ss_pred CEEeeeeE
Confidence 6654443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=67.39 Aligned_cols=91 Identities=7% Similarity=-0.045 Sum_probs=61.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC----CCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV----PEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~----~~~D~i~~~~vl 265 (360)
++.+|||++||+|.++..++.. ..+++++|. +.+++.++++ ++++++.+|+.+.. ...|+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 457888888 8888877643 46899999986521 123998884211
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
-.+ ...+++.+. .++|++.+++.-
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 111 124455554 478887776643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=62.78 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=57.3
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.+.|+..-+ .+++..|||||.|||.++..+++....+-++-.| |.++....++ ..++++.||++. +.|..
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 345666666 7888999999999999999999985544444444 7766654432 468999999999 77877
Q ss_pred cEEEec
Q 018145 257 DAILMK 262 (360)
Q Consensus 257 D~i~~~ 262 (360)
|+++.+
T Consensus 125 d~cVsN 130 (315)
T KOG0820|consen 125 DGCVSN 130 (315)
T ss_pred ceeecc
Confidence 877763
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00012 Score=65.77 Aligned_cols=102 Identities=17% Similarity=0.338 Sum_probs=67.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCe-EEEecchhHHHh----CCCC---CCcEEEecCCCC---CCCCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDLPHVVQD----APSY---AGVEHVGGNMFE---SVPEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~----a~~~---~~v~~~~~d~~~---~~~~~D~i~~~~vl 265 (360)
.+.+|||||.|.|.-+-++-.-+|++. ++.+.....+.. ...+ ........|+.. ++|..|.|.+.-++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357899999999988888888889874 555554222221 1111 234444555543 46666766655555
Q ss_pred ccC----ChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 266 HCW----DDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 266 h~~----~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|.+ ....+...++++...+.|||.|+|+|...+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 443 233444589999999999999999997654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00038 Score=65.47 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=68.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC---CCCcEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV---PEGDAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~---~~~D~i~~~~vlh~ 267 (360)
..+|||++||+|..+..++...+..+++++|. +..++.++++ ..+++..+|+.... ...|+|++-- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877667899998 8888877643 34668888886522 2249998842 1
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
. ....++..+.+.++|||.+++.
T Consensus 135 -G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 1 1245788878889999999998
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=57.06 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=71.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCCcEEEeccccccCCh
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILHCWDD 270 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~D~i~~~~vlh~~~~ 270 (360)
..+.|+|.|+|-++.-.++. .-+++.++. |.....|+++ .+++++.+|+.+ ++..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57999999999998765555 345555555 7777776654 579999999999 7866799987543222224
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.-..+++.+.+-||.+++++=.+...
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHhh
Confidence 555688999999999999988655433
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00012 Score=61.05 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=79.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCC-CC--CcEEEeccccccCChhHH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV-PE--GDAILMKWILHCWDDDHC 273 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~-~~--~D~i~~~~vlh~~~~~~~ 273 (360)
.+.++||+|.|.|..+..++..+..+-++-+. ..|..+.+.+ +.++... .+-. .+ .|+|.|.+.|.-.- +.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS-~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~--~p 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELS-WTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCF--DP 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhh-HHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhc--Ch
Confidence 46899999999999998887766442222221 3344433321 1222211 1111 11 29999999886543 33
Q ss_pred HHHHHHHHHhCCC-CcEEEEEeeecCC-----CCCCchhhhhhhhhhHHHhhhcCCCccC--CHHHHHHHHHHcCCceee
Q 018145 274 LRILKNCYKAVPG-NGKVIVMNSIVPE-----IPEVSSAARETSLLDVLLMTRDGGGRER--TKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 274 ~~~L~~i~~~Lkp-gG~lli~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~ 345 (360)
-++|+.++.+|+| .|++++.=...-. ..+..+. +....+. .+|+.+ ....+.++|+++||.+..
T Consensus 186 ~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~Le-------~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLLE-------NNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHHH-------hcCccHHHHHHHHHHHHHhcCchhhh
Confidence 6899999999999 7888874322211 1111110 0011111 134332 234578899999999877
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
....+
T Consensus 258 wTrlP 262 (288)
T KOG3987|consen 258 WTRLP 262 (288)
T ss_pred hhcCC
Confidence 66554
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0044 Score=55.24 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=94.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCC----------CCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESV----------PEG 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~----------~~~ 256 (360)
.+...|+.+|||-=.....+... ++++++-+|+|++++.-++ .++++++..|+.... +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999988777666322 3688999999988774322 257889999986321 112
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYTE 334 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ 334 (360)
-++++-.++.+++.+++.++|+.+.+...||+.+++ |.+.+-+..... .............. ..-....+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDGEWRA-GMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-EeccccchhHHH-HHHHHHHHhhhcccccccccCCChhhHHH
Confidence 588899999999999999999999999989887775 544431110000 00000010000000 00001236789999
Q ss_pred HHHHcCCceeeE
Q 018145 335 LAIAAGFKGINF 346 (360)
Q Consensus 335 ll~~aGf~~~~~ 346 (360)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0003 Score=58.51 Aligned_cols=100 Identities=15% Similarity=0.312 Sum_probs=64.5
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------------CCCcEEEecCCCCCCCCC-cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------------YAGVEHVGGNMFESVPEG-DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~~~~-D~i~~~ 262 (360)
...+.|||||-|.+...+...+|+.-+.+.++ -.+.+..++ ..++.+...+.+.-.|.. ---.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 46799999999999999999999999988887 334433321 144666666665533321 111111
Q ss_pred cccccCChhH-----------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 WILHCWDDDH-----------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ~vlh~~~~~~-----------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
-.++.+||+. ...++.+..=.|++||.++.+.-+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1222223322 2357788888999999999887543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00082 Score=60.88 Aligned_cols=95 Identities=20% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCCCCC---CC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~~~~---~~ 256 (360)
.++..++|-+|||.|-.++++++ +|+ -+++.+|+ |.|++.++.. +||+++..|.++... +.
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999998876 674 46777777 9999988731 789999999998322 22
Q ss_pred -cEEEeccccccCChhH--------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCWDDDH--------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~--------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+.- ++|+. ...+-+-+++.|+++|.+++.-.
T Consensus 366 fD~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 366 FDVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ccEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 888763 33322 23567788999999999998653
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00057 Score=58.48 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=68.3
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc----hhHHHhCCC---CCCcEEEecCCCC-C-CCC-CcEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL----PHVVQDAPS---YAGVEHVGGNMFE-S-VPE-GDAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~---~~~v~~~~~d~~~-~-~~~-~D~i~~~~vlh~ 267 (360)
+.+++|||.|.|.-+.-++=.+|+.+++.+|. -..++.+.. .++++++++-+.+ . .+. .|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999998999999999995 233333332 3679999998887 3 234 7999987654
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
....++.-+...+|+||+++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchh
Confidence 234567788889999988764
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=52.89 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCC-CCCC-cE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFES-VPEG-DA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~-~~~~-D~ 258 (360)
..+..+|+|+|||.|+++..++.. .++.+++++|. +..++.+... .++++..+++.+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 456789999999999999998882 27889999997 6666655432 3466666665542 2333 77
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
++.-+.--+++ ..+|+...+ |+...+++-++-
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77655444333 345666555 666666655443
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=53.46 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-----CCCcEEEec---CCCCCCCCC--cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGG---NMFESVPEG--DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~---d~~~~~~~~--D~i~~~~vl 265 (360)
.++.|||.||=|-|-....+.++-|..+.+.---|++.++-+. +.+|-...| |..+.+|+. |-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5679999999999999999999999988876655888776654 356766666 444456654 877653322
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+ -++...+.+.+.+.|||+|++-......
T Consensus 180 e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 22 2578889999999999999987766443
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00075 Score=46.78 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=48.2
Q ss_pred HHhhChhhHhhhCCC--CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 44 AIQLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 44 a~~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
..+-.|+..|...|+ +|+.+||+++|+ +...+++.|..|...|+|.... ..+..|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~-~~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG-GTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCceEeec
Confidence 345567888888776 999999999999 8889999999999999999742 1346777664
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0028 Score=51.23 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=63.6
Q ss_pred EEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC---CC---cEEEecCCCC---CCCC--C-cEEEeccccc
Q 018145 201 LVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY---AG---VEHVGGNMFE---SVPE--G-DAILMKWILH 266 (360)
Q Consensus 201 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~d~~~---~~~~--~-D~i~~~~vlh 266 (360)
++|+|||+|... .+....+. ..++++|. +.++..++.. .. +.+..+|... ++.. . |++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 33333333 36777887 5555543321 11 5778887664 3443 3 9994444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+ .+ ....++.+.+.++|+|.+++.+.....
T Consensus 131 ~-~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 L-LP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred c-CC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4 33 568899999999999999998876543
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00017 Score=57.71 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=67.2
Q ss_pred cceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCCC--CC-C--CcEEEe
Q 018145 198 VERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES--VP-E--GDAILM 261 (360)
Q Consensus 198 ~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~--~~-~--~D~i~~ 261 (360)
+.+||++|+|.- -.+..++..-|...+...|- ...++..++ ..++..+..+.... +. . .|+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999954 44455666667888888886 444444332 13344444444442 11 2 299999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.++.. ++....+.+.|+..|+|.|+-++.-|-+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 999975 6788899999999999999977766543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0068 Score=56.07 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=80.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHh--------hC--------CCCeEEEecchh--HHHhCCC----------CCC--cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITS--------KY--------PQIKAVNFDLPH--VVQDAPS----------YAG--VEH 244 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~~--v~~ 244 (360)
.++..+|+|+||.+|..+..+.. ++ |.+.++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999988775433 22 235677778742 1111111 122 456
Q ss_pred EecCCCC-CCCCC--cEEEeccccccCCh-------------------------------------hHHHHHHHHHHHhC
Q 018145 245 VGGNMFE-SVPEG--DAILMKWILHCWDD-------------------------------------DHCLRILKNCYKAV 284 (360)
Q Consensus 245 ~~~d~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------------~~~~~~L~~i~~~L 284 (360)
+.+.|.+ -+|.. |+++++++||+++. .|...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7789998 57776 99999999998762 12233444455679
Q ss_pred CCCcEEEEEeeecCCCCCCch--hhhhhhhhhHHHhhhcCCC--------------ccCCHHHHHHHHHHcC-CceeeE
Q 018145 285 PGNGKVIVMNSIVPEIPEVSS--AARETSLLDVLLMTRDGGG--------------RERTKKEYTELAIAAG-FKGINF 346 (360)
Q Consensus 285 kpgG~lli~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
+|||++++.-...++...... ...+....+.++.... .| -.++.+|+++.+++.| |++.++
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~-eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVA-EGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHH-TTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHH-cCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 999999999888766211110 0001111111111111 22 2258999999999987 555333
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=58.08 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCC--CC-cEEEeccccccCChhH
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP--EG-DAILMKWILHCWDDDH 272 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~--~~-D~i~~~~vlh~~~~~~ 272 (360)
.++.++|||||++|.++..++++ +.+++++|...+.......++|++..+|.+...| .. |++++-.+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 56789999999999999999998 4589999976666666667899999999988433 33 9998866543
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGN-GKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~Lkpg-G~lli~e~~~~ 298 (360)
..++.+-+.++|..| .+-.|...-.+
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 235677788888777 33444444333
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00033 Score=65.37 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=41.9
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.+|||++||+|.++..+++... +++++|. +++++.++++ .+++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988864 7888887 8888877653 368899988765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0068 Score=51.75 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=86.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-h----hHHHhCCCCCCcEEEecCCCCCC-----CCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-P----HVVQDAPSYAGVEHVGGNMFESV-----PEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~-----~~~-D~i~~~ 262 (360)
++++.+||-+|.++|.....+..--. +..+.+++. | +.++.|+++++|-=+-.|+..|. -+. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 67889999999999999999888754 667777766 4 56777777888888888888742 123 888874
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
= -+ +++..-++.++..-||+||.+++.=-...-+...+.. . .-.+-.+.|++.||+
T Consensus 151 V-aQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-------------------~-vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 V-AQ---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-------------------E-VFAEEVKKLKEEGFK 206 (229)
T ss_dssp --SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-------------------H-HHHHHHHHHHCTTCE
T ss_pred C-CC---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-------------------H-HHHHHHHHHHHcCCC
Confidence 3 22 3466778889999999999999865332111100000 0 011224556778999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
..+.+.+.+
T Consensus 207 ~~e~i~LeP 215 (229)
T PF01269_consen 207 PLEQITLEP 215 (229)
T ss_dssp EEEEEE-TT
T ss_pred hheEeccCC
Confidence 999988863
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00033 Score=59.53 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=64.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC--cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG--DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~--D~i~~~~vl 265 (360)
.++.+|+|.-||.|.++..+++..+..+++..|+ |..++..++. .++....+|..+-.+.. |-|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l-- 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL-- 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC--
Confidence 4678999999999999999999877888999999 8877765432 57899999988733333 9888754
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
| +....+|..+.+.+++||.+.
T Consensus 178 ---p-~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ---P-ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---T-SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---h-HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233467888999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.026 Score=47.31 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=91.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCCCCCCcEEEecCCCCCCC-----CC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP-----EG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~-----~~-D~i~~~~ 263 (360)
++++.+||=+|..+|.....+..-.++-.+.+++. .+.+..|++++++-=+-+|+..|.. +. |+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 67899999999999999999999888666666654 3566677778888888888877522 33 988763
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
+-+ ++++.-+..++..-||+||++++.--.+.-+..... ..--.++ .+-|++.||++
T Consensus 153 VAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-------------------~~vf~~e-v~kL~~~~f~i 209 (231)
T COG1889 153 VAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP-------------------EEVFKDE-VEKLEEGGFEI 209 (231)
T ss_pred cCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH-------------------HHHHHHH-HHHHHhcCcee
Confidence 221 345666788899999999988876554433211110 0001223 34567789999
Q ss_pred eeEEecCC
Q 018145 344 INFASCVC 351 (360)
Q Consensus 344 ~~~~~~~~ 351 (360)
.++..+.+
T Consensus 210 ~e~~~LeP 217 (231)
T COG1889 210 LEVVDLEP 217 (231)
T ss_pred eEEeccCC
Confidence 99988763
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=57.08 Aligned_cols=96 Identities=15% Similarity=0.280 Sum_probs=62.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCC----CCCCcEEEecCCCC-CCCC----
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SYAGVEHVGGNMFE-SVPE---- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~~v~~~~~d~~~-~~~~---- 255 (360)
.+.+++.+. ..+...|||||+|.|.++..|++...++.++-.| +..++..+ ..++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID-PDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-HHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCc-HhHHHHHHHHhhhcccceeeecchhccccHHhhcC
Confidence 456777666 6678999999999999999999998444444444 55544433 34789999999998 5554
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCC
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPG 286 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp 286 (360)
..+.+.++.=++.+ ..++.++...-+.
T Consensus 97 ~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 97 QPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred CceEEEEEecccch----HHHHHHHhhcccc
Confidence 33334444322322 3566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0034 Score=60.54 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=70.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCC------CCCcEEEecCCCC---CCCCC-cEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG-DAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~-D~i~~- 261 (360)
.+++.+|||+.+|.|.=+..++....+ ..++..|+ +.-++..++ ..+|.+...|... ..+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467789999999999999999998754 57788887 444433322 1457777777654 23333 88873
Q ss_pred ---c--cccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ---K--WILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ---~--~vlh-------~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ .++. .|+.+++ .++|.++.+.|||||+|+-.+-..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3 2222 2333332 578999999999999997766543
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=50.07 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=84.1
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCCC-C-C-cEEEeccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVP-E-G-DAILMKWILH 266 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~-~-~-D~i~~~~vlh 266 (360)
..++.||||-++.+.+.+.+.++..+++..|. +...+.|.+ .++++...+|-+.++. + . |+++...+
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM-- 94 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM-- 94 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC--
Confidence 45599999999999999999999999999998 655555433 2688999999887543 3 3 88887763
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
.-.-+..+|..-.+-|+.=-++++ .| + . ...++++||.+.+|.++.-
T Consensus 95 --GG~lI~~ILee~~~~l~~~~rlIL-QP---n---------------------~------~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 95 --GGTLIREILEEGKEKLKGVERLIL-QP---N---------------------I------HTYELREWLSANSYEIKAE 141 (226)
T ss_pred --cHHHHHHHHHHhhhhhcCcceEEE-CC---C---------------------C------CHHHHHHHHHhCCceeeee
Confidence 445677888888877764334443 11 1 1 3456788888888887665
Q ss_pred EecC
Q 018145 347 ASCV 350 (360)
Q Consensus 347 ~~~~ 350 (360)
.-+.
T Consensus 142 ~ile 145 (226)
T COG2384 142 TILE 145 (226)
T ss_pred eeec
Confidence 5444
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00077 Score=62.61 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=77.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~ 263 (360)
..++..++|+|||.|.....+..- .....++++. +.-+..+... ..-.++.+|+.+ ++++. |.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 345568999999999999877654 4566777776 4444333221 345568889988 67765 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+..|.++ ...++++++++++|||+++..|.+....
T Consensus 187 ~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 9998774 4689999999999999999999877544
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=48.76 Aligned_cols=58 Identities=28% Similarity=0.390 Sum_probs=48.2
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-+.|++.|... ++.|+.+||+.+|+ +..-+.+.|+.|+..|++.+. ..++.|++++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD--GQNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec--CCCCceeecHHH
Confidence 45678888775 58999999999999 899999999999999999974 245678887643
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=51.61 Aligned_cols=138 Identities=12% Similarity=0.212 Sum_probs=88.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc------hhHHHhCCC--------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL------PHVVQDAPS-------------------------------- 238 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~-------------------------------- 238 (360)
...+||-=|||.|.++..|+..++.+.+--+.. .-++..++.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 357899999999999999999776665421110 111111110
Q ss_pred -------CCCcEEEecCCCC--CCCC---C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch
Q 018145 239 -------YAGVEHVGGNMFE--SVPE---G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 305 (360)
Q Consensus 239 -------~~~v~~~~~d~~~--~~~~---~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~ 305 (360)
.+....-.|||.+ ..+. . |+|+.++.+- +...+...|..|+..|||||..+=+-|..-.-.....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0224556789887 2333 2 9998876654 3567889999999999999988766554422100000
Q ss_pred hhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 306 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. . ...+-+.+.+++..+.+.-||++++-...
T Consensus 308 ~-------~------~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 308 V-------E------NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred C-------c------ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 0 0 01244568999999999999998776533
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0033 Score=52.77 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCe---------EEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIK---------AVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~- 255 (360)
++++..|+|-=||+|.+..+.+...++.. +++.|+ +.+++.++.+ ..+.+...|+.+ +.+.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999998877777766 788887 8888776543 358899999988 6443
Q ss_pred C-cEEEecccccc-CCh-hHH----HHHHHHHHHhCCCCcEE
Q 018145 256 G-DAILMKWILHC-WDD-DHC----LRILKNCYKAVPGNGKV 290 (360)
Q Consensus 256 ~-D~i~~~~vlh~-~~~-~~~----~~~L~~i~~~LkpgG~l 290 (360)
. |+|++.--.-. .+. .+. ..+++.+.+.|+|...+
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 3 99988432211 111 122 35678888999983333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00066 Score=44.31 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=37.9
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+.|++.|...+ +.|+.|||+++|+ +..-+.|+|..|+..|+|.+
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 45677777754 6899999999999 89999999999999999996
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.019 Score=49.42 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhCCCCCCcEEEec-CCCCC----CCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSYAGVEHVGG-NMFES----VPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-d~~~~----~~~~-D~ 258 (360)
..++.+.-..++..+||||..||.++..++++. ..+++++|. -+.....+..+||...+. |+..- +.+. |+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCe
Confidence 444555523467999999999999999988874 345666665 455555666678766655 44331 2222 78
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE-eeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM-NSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+++--.+- ....+|-.+...++|++-++.. -|-....+... +.-....+ +.....-..++.+++.
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v--~kkGvv~d-------~~~~~~v~~~i~~~~~ 213 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQV--GKKGVVRD-------PKLHAEVLSKIENFAK 213 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhc--CcCceecC-------cchHHHHHHHHHHHHh
Confidence 77643331 3457899999999999776653 33222110000 00000000 1122234577889999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
+.||++..+...+
T Consensus 214 ~~g~~~~gl~~Sp 226 (245)
T COG1189 214 ELGFQVKGLIKSP 226 (245)
T ss_pred hcCcEEeeeEccC
Confidence 9999999988765
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0048 Score=53.12 Aligned_cols=98 Identities=16% Similarity=0.294 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC----CeEEEecc-hhHHHh-----CCCCCC--cEEEecCCCC---CCCCC---c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDL-PHVVQD-----APSYAG--VEHVGGNMFE---SVPEG---D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~-----a~~~~~--v~~~~~d~~~---~~~~~---D 257 (360)
.++..++|+|.|+..=+..++..+.. ++++-+|. ..+++. .++++. |.-+++|+.. ..|.+ =
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888888755 67888887 444442 233455 4456677765 24443 4
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
.++..+.|-+++++++..+|.+++.+|+||-++++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 557789999999999999999999999999888884
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0058 Score=55.45 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecchhHHHhCCC----C-----CCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDLPHVVQDAPS----Y-----AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~----~-----~~v~~~~~d~~~-~~~ 254 (360)
+.+.+.+. .+...|+-+|||-=.-+..+ ..| .+++.-+|+|++++.=++ . .+++++..|+.+ +.+
T Consensus 83 ~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 83 DFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 33444443 33688999999855444333 234 478889999999986433 2 279999999995 433
Q ss_pred C-----C------cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhhhhHHHhhhcC
Q 018145 255 E-----G------DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRDG 322 (360)
Q Consensus 255 ~-----~------D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 322 (360)
. | -++++-.++.+++++.+.++|..|...+.||..++.............. .................
T Consensus 159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 238 (297)
T COG3315 159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL 238 (297)
T ss_pred HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence 1 1 5889999999999999999999999999999888876541211100000 00000000000000000
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEE
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
.-......++..++.+.||......
T Consensus 239 ~~~~~~~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 239 VYFGDDPAEIETWLAERGWRSTLNR 263 (297)
T ss_pred eeccCCHHHHHHHHHhcCEEEEecC
Confidence 1112357899999999999977764
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00072 Score=46.89 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=45.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
.+..++..|...|+.|+++||+.+|+ +...+.+.|+-|...|+|.+.. ..+..|..
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~-~~~~~Y~a 64 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE-GRPKVYRA 64 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE-ECCEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CceEEEEE
Confidence 45567777765579999999999999 9999999999999999999864 23334543
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0089 Score=49.31 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=69.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEec-CCCCC---------CCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGG-NMFES---------VPE 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~~~ 255 (360)
+|-+.+.-+.+..+|||+||..|.++.-..++. |+..+.++|+-.+. .-.+++++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 344555546788999999999999998777766 99999999973322 2245666666 65543 232
Q ss_pred C--cEEEeccc--------ccc-CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 G--DAILMKWI--------LHC-WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~--D~i~~~~v--------lh~-~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
- |+|++-.. +.| ...+-|..+|.-....++|+|.+++--+.-
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 2 88776321 111 112345566667777888999988765543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0014 Score=51.64 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=48.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC-C--cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE-G--DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~-~--D~i~~~~vl 265 (360)
.+.+++|+|||.|.+. ++..+|. -.++++|+ |+.++.+.++ -++++...|+.+..+. + |..+.+--+
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4689999999999998 3444544 56899999 9999988765 2468888888884333 3 777665433
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.002 Score=56.81 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=60.2
Q ss_pred EEEecCCCC--CC------CC-CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 018145 243 EHVGGNMFE--SV------PE-GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 311 (360)
Q Consensus 243 ~~~~~d~~~--~~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~ 311 (360)
.++..|+.+ ++ |. .|+|++..+|.... .+.-.+.++++.++|||||.|++........ +..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y~v 208 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------YMV 208 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------EEE
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------EEE
Confidence 377788877 22 23 49999999998754 3456688999999999999999988754321 000
Q ss_pred hhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 312 LLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 312 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
.-. .......+++.+++.++++||.+.+...
T Consensus 209 G~~------~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 GGH------KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp TTE------EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCE------ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0011234889999999999999988875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0084 Score=52.42 Aligned_cols=105 Identities=13% Similarity=0.214 Sum_probs=74.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhH----HHhCCCC---CCcEEEecCCCC-CCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHV----VQDAPSY---AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~---~~v~~~~~d~~~-~~~ 254 (360)
...|+..++ ..++.+|++-|.|+|.++.++++.. |.-+..-+|. ..- .+..+++ +.|++.+-|+.. -++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 346677777 7889999999999999999999987 6777877776 333 3333333 679999999987 333
Q ss_pred --C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCc-EEEEEeeec
Q 018145 255 --E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNG-KVIVMNSIV 297 (360)
Q Consensus 255 --~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG-~lli~e~~~ 297 (360)
+ +|.|++ ++|.+. ..+-.++++||-+| +|+...++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 299987 344432 34667777888664 777766655
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0055 Score=54.60 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=56.8
Q ss_pred CcceEEEEcCCcchHHHH-HHhh-CCCCeEEEecc-hhHHHhCCC--------CCCcEEEecCCCC-C--CCCCcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSM-ITSK-YPQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-S--VPEGDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~--~~~~D~i~~~ 262 (360)
.+.+|+=||||.=-++.- +++. .++..++++|. |.+++.+++ ..+++|+.+|..+ . ..+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 457999999997755544 4443 46778888888 877777653 1679999999876 3 2334999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
...- .+.++-.++|.++.+.|+||+++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23445678999999999999988875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.015 Score=48.40 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEeccccccC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWILHCW 268 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~i~~~~vlh~~ 268 (360)
.-.+.+|||+|.|+|-.++.-++.. ...++..|+ |......+-+ -.|.++..|...+.+..|+++.+.++++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4457899999999999888766654 333444555 5544444322 24678888877633344999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+ ...+++.-..+....|-.+++-++-++.
T Consensus 156 ~--~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 T--EADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred h--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 4556777444444567777777776654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0014 Score=52.10 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=36.6
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++.+++.|+.-++-...++.+++.|||||+|-|.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999988889999999999999999998654
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.003 Score=40.37 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
.+..|+..|.+.|+.|..+||+.+|+ ....+.+.++-|...|+|+
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 35678889999889999999999999 8999999999999999985
|
... |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0036 Score=43.20 Aligned_cols=58 Identities=19% Similarity=0.390 Sum_probs=40.9
Q ss_pred ChhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhc
Q 018145 48 GVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVS 109 (360)
Q Consensus 48 glfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s 109 (360)
-++..|. ..++.|..+|++.+++ +...+.+.++.|...|+|++.....+ ..|++|+.|
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 3444555 4469999999999999 89999999999999999977643222 358888764
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0035 Score=42.38 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=43.9
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.--.++.|++.|...+|.|+.+||+.+|+ ++.-+.+-|+.|...|+|+..
T Consensus 5 ~aL~~p~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 5 KALSDPTRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHTSHHHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34444567888888855469999999999999 888999999999999999863
|
... |
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0048 Score=55.04 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=47.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|...++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .+.++|++.+..-
T Consensus 17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 445566655568999999999999 899999999999999999974 3567899997643
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0037 Score=50.16 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.|+|||||.|.++..+++.+|..+++.+|. |.+.+.+++. ++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999997 7777655432 347777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0078 Score=55.25 Aligned_cols=101 Identities=15% Similarity=0.257 Sum_probs=65.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh-------CCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-C-CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-S-VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~-~~-- 254 (360)
..+..+|+|-.||+|.++.++.+. .+...++++|+ +.++..++-. ....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456779999999999999888774 37788889988 6666554321 234688889876 3 22
Q ss_pred CC-cEEEec--cccccCCh-----------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 255 EG-DAILMK--WILHCWDD-----------------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 255 ~~-D~i~~~--~vlh~~~~-----------------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. |+|+++ +....|.. ..-..++.++.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 999873 22221110 1112578999999999999888765
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0029 Score=40.24 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=38.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
++.|...|.+ ||.++.+|++.+|+ ++..+.+-|+.|...|+|.
T Consensus 4 R~~Il~~L~~-~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE-GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT-SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-CCCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 5677888888 79999999999999 9999999999999999986
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.003 Score=59.25 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.3
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988764 6888887 8888877653 468899888754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0018 Score=49.20 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=39.7
Q ss_pred EEEcCCcchHHHHHHhhCCCC---eEEEecc-h---hHHHhCCC---CCCcEEEecCCCCC---CC-CC-cEEEeccccc
Q 018145 202 VDVGGGFGVTLSMITSKYPQI---KAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFES---VP-EG-DAILMKWILH 266 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~~---~~-~~-D~i~~~~vlh 266 (360)
||||+..|..+..+++..+.. +++.+|. + ..-+..++ ..+++++.+|..+. ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988877654 5788887 4 23333332 25799999998652 33 23 9888743 23
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3466778999999999999988865
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0013 Score=53.89 Aligned_cols=62 Identities=18% Similarity=0.386 Sum_probs=42.0
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCC---CC--C-CcEEEec
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFES---VP--E-GDAILMK 262 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~---~~--~-~D~i~~~ 262 (360)
.|+|+-||.|..+..+++.+..+.++..| |..++.++.. ++|+++.+|+++. .. . .|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid-~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID-PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES--HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC-HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999997664444444 7777766542 5899999999872 22 2 3888764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0058 Score=54.01 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=47.8
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.|...+ ++++.|||+++|+ +..-+.|+|..|+..|++.++ ..+++|.+++..-
T Consensus 6 al~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d--~~~g~Y~Lg~~~~ 65 (246)
T COG1414 6 ALAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD--PEDGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEeehHHHH
Confidence 356777777742 3569999999999 899999999999999999985 3356899997643
|
|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.01 Score=46.05 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhcC
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVSN 115 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~~ 115 (360)
..+..++..|...|+.|..+||+.+++ +...+.+.++-|+..|+|++.....+ -.+.+|+.|..+...
T Consensus 28 ~~q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 28 EQQWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS 98 (118)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 445567777877779999999999999 88899999999999999998643222 268999998876653
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0039 Score=44.67 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc----eeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~s~~~~ 113 (360)
++++|+..|...+..++.+|.+.+|+ +...+...|+.|...|+|...-...++ .|++|+.|+...
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~ 69 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAF 69 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHH
Confidence 47788888888679999999999999 889999999999999999986432222 488998887443
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.016 Score=49.54 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCC-------CCCCcEEEecCCCCCC----C---CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAP-------SYAGVEHVGGNMFESV----P---EG-- 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~----~---~~-- 256 (360)
.-++.++||||.=+|.-+..++.+.|. .+++.+|. +...+.+. -...|+++.++..+.+ + .+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345789999999999999999999976 67888887 55544443 2367999999887632 2 12
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
|+++.- +|-+. -.....++.+.+|+||.|++-...++.
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhcccccEEEEeccccCC
Confidence 888763 34443 348899999999999999886655543
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.036 Score=44.65 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=50.2
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+..++..|...++.|..+||+.+++ ++..+.++++-|+..|+|.+.....+. ...+|+.|..+..
T Consensus 42 q~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 42 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence 4445677766678999999999999 899999999999999999986432222 3667777775543
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0094 Score=44.51 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=49.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.++.|++.|..+++.++.+|++.+++ .++.+.+-|+.|...|+|..........|++.+...
T Consensus 13 tRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCcc
Confidence 46788899988557999999999999 899999999999999999985322333566665544
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=56.84 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC--------CeEEEecc-hhHHHhCCCC----C--CcEEEecCCCCC-------C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ--------IKAVNFDL-PHVVQDAPSY----A--GVEHVGGNMFES-------V- 253 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~d~~~~-------~- 253 (360)
...+|||.+||+|.++..+++..+. ..++++|+ +..++.++.. . .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887742 45678887 7776655432 2 355565655431 1
Q ss_pred CCCcEEEe
Q 018145 254 PEGDAILM 261 (360)
Q Consensus 254 ~~~D~i~~ 261 (360)
+..|+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 12399987
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0043 Score=44.12 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=44.2
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
|+..+.. |+.+..+|+..+|+ +...+.+.|+.|...|+|. ..++.|.+|+.|..++.
T Consensus 11 IL~~l~~-~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~----~~~~~Y~lTekG~~~l~ 67 (77)
T PF14947_consen 11 ILKILSK-GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIK----KKDGKYRLTEKGKEFLE 67 (77)
T ss_dssp HHHHH-T-T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEE----EETTEEEE-HHHHHHHH
T ss_pred HHHHHHc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCee----CCCCEEEECccHHHHHH
Confidence 4455544 69999999999999 9999999999999999997 47899999999987764
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.011 Score=42.66 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|.++||+.+++ ++..++++++.|...|+|.... ..++.|.++...+
T Consensus 25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-GRGGGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-STTSEEEESS-CC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-CCCCceeecCCHH
Confidence 6999999999999 9999999999999999998753 3457888775443
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.01 Score=45.72 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
...+|.--.++.|+..|...|+.++.+|++.+++ .+..+.+-|+.|...|+|........-.|++.+.
T Consensus 9 ~fkaLadptRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~ 76 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQGKWVHYRLSPH 76 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEcCEEEEEECch
Confidence 3445555668888888876568999999999999 8899999999999999998753222235777653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.041 Score=56.31 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=71.6
Q ss_pred hHHHHHhhcccC-CCcceEEEEcCCcchHHHHHHhh------------C------------------------------C
Q 018145 184 AMERILEHYEGF-QNVERLVDVGGGFGVTLSMITSK------------Y------------------------------P 220 (360)
Q Consensus 184 ~~~~i~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~------------~------------------------------p 220 (360)
.+..++.... + ++...++|-.||+|.++++.+.. | .
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 4455555433 6 45689999999999999886542 1 1
Q ss_pred CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC---C-CcEEEeccccc-cCC-hhHHHHHHHHHHHhCC
Q 018145 221 QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP---E-GDAILMKWILH-CWD-DDHCLRILKNCYKAVP 285 (360)
Q Consensus 221 ~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~---~-~D~i~~~~vlh-~~~-~~~~~~~L~~i~~~Lk 285 (360)
..+++++|+ +.+++.|+.+ ++|++..+|+.+ +.+ . .|+|+++=-.- .+. ..+...+.+.+-+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 235789998 8888887653 458999999987 332 1 39998862221 122 2344445444444444
Q ss_pred ---CCcEEEEEee
Q 018145 286 ---GNGKVIVMNS 295 (360)
Q Consensus 286 ---pgG~lli~e~ 295 (360)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988887664
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=50.88 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----CCCcEEEecCCCCCCCCC--cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----YAGVEHVGGNMFESVPEG--DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~--D~i~~~~vlh~ 267 (360)
..+.+|+|||||---++.-.....|+.++++.|+ ..+++.... ....+....|.....|.. |+.++.-++|-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999998888888899999998 666665433 256788888999865544 99999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+..+.. ..--++.+.++ .-.++|.-+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 765543 33334444553 24555555544
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0099 Score=53.53 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=47.0
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+.|++.|.+. ++.|+.|||+.+|+ +..-+.|+|..|+..|||.+. .+.++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQV--GELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence 4456666653 48999999999999 899999999999999999974 356889988654
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.19 Score=45.07 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecchhHHHhCCC---C-------------------------CCcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDLPHVVQDAPS---Y-------------------------AGVEHV 245 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---~-------------------------~~v~~~ 245 (360)
.+...|+.+|||.-.+...+...+ +.++++.+|.|.+++.--. . ++....
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 466899999999999999999988 7789999999876663210 0 223444
Q ss_pred ecCCCC--CCC----C-----C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh
Q 018145 246 GGNMFE--SVP----E-----G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312 (360)
Q Consensus 246 ~~d~~~--~~~----~-----~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~ 312 (360)
..|..+ ++. . . -+++.--+|-+++++....+++-+.+.. |.+.+++.|.+.+.++ +...
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~-------Fg~v 237 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDR-------FGKV 237 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCCh-------HHHH
Confidence 444442 111 1 1 3566677888889999999999999888 5678888898886652 2222
Q ss_pred hhHHHhhhcCCC------ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 313 LDVLLMTRDGGG------RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 313 ~~~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
+--.... .+. ...|.+..++-|.++||+.+.+.++
T Consensus 238 M~~nlk~--r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 238 MLANLKR--RGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHh--cCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2111110 111 2247888889999999999988765
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.011 Score=53.21 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=46.8
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+.|++.|.+. ++.|+.|||+.+|+ +..-+.|+|..|+..|+|.++ ...+.|.+....
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQD--SQLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCeEEecHHH
Confidence 4456666553 37999999999999 899999999999999999875 356789988654
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.032 Score=53.32 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=82.4
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCC--CcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-h
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ--NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-P 230 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 230 (360)
..|+.+++++-....|.++. ...+.+..+..+ ....|+-+|+|.|-+..+.++. ...++.+.++. |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 34677778887777676544 345566655322 2678899999999887776654 23456677776 6
Q ss_pred hHHHhCCCC------CCcEEEecCCCC-CCC-C-CcEEEeccccccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 231 HVVQDAPSY------AGVEHVGGNMFE-SVP-E-GDAILMKWILHCWD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 231 ~~~~~a~~~------~~v~~~~~d~~~-~~~-~-~D~i~~~~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.++...+.. .+|+++..|+.. .-| + .|++++-. |--+. .+--.+.|..+-+.|||+|.-+=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 655543322 689999999998 433 3 39886522 11122 22234568899999999986553
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=53.21 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=69.8
Q ss_pred cceEEEEcCCcchHHHHHHhhC--------------------CCCeEEEecc---hhHHHhCCC----C-----------
Q 018145 198 VERLVDVGGGFGVTLSMITSKY--------------------PQIKAVNFDL---PHVVQDAPS----Y----------- 239 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 239 (360)
..+||-||||.|.-..+++..+ +.++++.+|+ ..++..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999987766666554 2257788887 345543211 0
Q ss_pred --------CCcEEEecCCCC-CCC--------CC-cEEEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 240 --------AGVEHVGGNMFE-SVP--------EG-DAILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 240 --------~~v~~~~~d~~~-~~~--------~~-D~i~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
-.++|...|++. ..+ +. |+|.+-+.++.+ +..+..++|.++...++||..|+|+|.-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 147899999987 321 12 888776666553 3446678999999999999999999953
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.015 Score=47.90 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=46.5
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++.+.+.+. |. ...++.|+++||+.+++ ++..++++|..|...|+|.... ..++.|.+....
T Consensus 9 yAl~~l~~lA-~~--~~~~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r-G~~GGy~Lar~p 71 (164)
T PRK10857 9 YAVTAMLDVA-LN--SEAGPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR-GPGGGYLLGKDA 71 (164)
T ss_pred HHHHHHHHHH-hC--CCCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCCeeccCCH
Confidence 3445555544 21 22248999999999999 9999999999999999999743 355678776443
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.03 Score=38.29 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
++.|..+||+.+|+ +...+.+.|+.|...|+|... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 58999999999999 889999999999999999962 336787654
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=45.03 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.1
Q ss_pred hhChhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..+|.+|- ..||.|+++||+.++. +..-+.+-|+-|...|+|.+.
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeee
Confidence 455666666 5689999999999999 899999999999999999985
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.11 Score=47.61 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEec-CCCC-CCCCC--cEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGG-NMFE-SVPEG--DAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-d~~~-~~~~~--D~i~~-- 261 (360)
..++..|||==||||.++.+..- -++++++.|+ ..|++-++.+ ....+..+ |+.+ ++++. |.|.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 56678999999999999987544 4788899998 7888888764 34445555 8887 77763 87765
Q ss_pred ---ccc-cccCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 ---KWI-LHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ---~~v-lh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+. ..-.. ++-..++|+.+.+.||+||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 111 22111 34466889999999999999998665
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0083 Score=41.66 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=36.6
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|-+.|...|.+|..+||..+++ ++..++.+|+.|+..|.|...
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 5677878789999999999999 999999999999999999974
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=46.13 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=46.3
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.+...|+.++.+||+.+++ ++..+.+.++.|...|+|.+ .....|.+|+.|..+.
T Consensus 16 l~~~~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~---~~~~~i~LT~~G~~~a 70 (142)
T PRK03902 16 LIEEKGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIY---EKYRGLVLTPKGKKIG 70 (142)
T ss_pred HHhcCCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEE---ecCceEEECHHHHHHH
Confidence 3445578999999999999 88899999999999999986 3456799999987554
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=52.07 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=49.0
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
-+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .+++.|++++....+
T Consensus 13 al~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~--~~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 13 GLMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRS--ASDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--cCCCcEEEcHHHHHH
Confidence 34566666553 36999999999999 899999999999999999975 356789999765443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=51.40 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
.+++++.+. ..++..++|.-+|.|..+..+++..|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456677665 56678999999999999999999998899999998 8888877653 478888888765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.014 Score=51.79 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=47.2
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.+... ++.|+.|||+.+|+ +..-+.|+|..|+..|+|.+ +++.|++.+.-.
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~----~~~~Y~lG~~~~ 68 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTS----DGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEecHHHH
Confidence 35567777653 48999999999999 88999999999999999996 457899987543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.044 Score=46.53 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=54.6
Q ss_pred CcceEEEEcCCcchHHHH---HHhhC-CCCeEEEecc--hhHHHhCCCC----CCcEEEecCCCCC-----CC----CC-
Q 018145 197 NVERLVDVGGGFGVTLSM---ITSKY-PQIKAVNFDL--PHVVQDAPSY----AGVEHVGGNMFES-----VP----EG- 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~d~~~~-----~~----~~- 256 (360)
+|..|+++|.-.|.-+.- +++.+ +..+++++|+ +..-..+.+. +||+++.||-.++ .. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 368999999888766654 44555 7788888887 2222222222 7999999998762 11 12
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+|+. ..-|.. +.+.+.|+.....++||+++++-|...
T Consensus 112 ~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 34443 333433 367788999999999999999977655
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.075 Score=43.24 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=47.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
|...+...++.+..+||+.+++ ++..+.++++.|...|+|.+. ....+.+|+.|..+.
T Consensus 42 I~~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~---~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMR---PYRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe---cCCceEECchHHHHH
Confidence 5556665568999999999999 899999999999999999873 445688888877654
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.022 Score=45.38 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
++.|.++||+.+++ ++..++++|+.|...|+|.... ..++.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~-G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR-GPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe-CCCCCEeccCCH
Confidence 48999999999999 9999999999999999998642 345578777543
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.018 Score=38.80 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=36.3
Q ss_pred ChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|.+.|.. .+|.|..|||+.+|+ +..-++++|..|+..|.|...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45566666 569999999999999 888999999999999999864
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.044 Score=51.42 Aligned_cols=91 Identities=11% Similarity=0.094 Sum_probs=68.8
Q ss_pred cceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC---CC-CcEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV---PE-GDAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~---~~-~D~i~~~~vl 265 (360)
+.+|||+-||+|..+...+.+.++ -+++..|+ |..++.++++ ..+++..+|+..-. .. .|+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998655 46888898 8888776543 34788888887621 12 39998743 2
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+ ..++..+.+.+++||.|++.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 212 358889999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.027 Score=41.86 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=50.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
++-++..|...|+.|..+||+.+++ ++..+.+.++-|+..|+|+..... ....|.+|+.+..+..
T Consensus 12 ~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 12 QFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence 5567777776668999999999999 888999999999999999974211 1125777777765543
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.014 Score=39.41 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=39.2
Q ss_pred hhChhhHhhhCCC--CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 46 QLGVFEIIAKAGE--LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 46 ~lglfd~L~~~g~--~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
++.++-.|...++ .|+.+||+.+++ ++..+.+.++.|+..|+|++..
T Consensus 7 q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence 4456666777655 899999999999 8999999999999999999853
|
... |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.021 Score=36.12 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=35.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
+.|..+||+.+|+ +...+.+.|+.|.+.|++.. .++.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~----~~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR----EGGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----eCCEEEE
Confidence 7899999999999 88899999999999999985 3466754
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.034 Score=40.69 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=42.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..+.|+..|.+.||-.+.-||..+++ +...++..++.|..+|+|++.
T Consensus 8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 35667888888889999999999999 999999999999999999985
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.029 Score=50.86 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=49.5
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
+..++++.+. ..++..++|.--|.|.++.++++.+|+.+++++|. |.+++.+++. +|+.++.++|.+
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3456777776 67778999999999999999999999999999999 8899777643 678888887653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.043 Score=50.45 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=75.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC---CCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV---PEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~---~~~D~i~~~~vl 265 (360)
.+.+|+|.=+|.|.++..+++...- +++.+|+ |..++..+++ ++|..+.||...-. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4789999999999999999887543 3888898 8888776543 45889999998832 335999987532
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
....++-.+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 3456788889999999999999987654
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.029 Score=48.00 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=47.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecchhchh
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSKY 111 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~~s~~ 111 (360)
-|...|.+.||.|+.+||+++|+ ++..+++-|+.|++.|+|+.... ...-.|++|..+..
T Consensus 15 ~il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 35666777789999999999999 89999999999999999987521 11124888877764
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.013 Score=39.20 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=39.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
++.++..|.+.|+.|..+||+.+++ ++..+.++++-|+..|+|++..
T Consensus 5 q~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 4445566667679999999999999 9999999999999999999854
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.065 Score=42.51 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=69.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
+++++.++ ..+..+.+|+|.|.|....+.++.. -...+++++ |-.+..++-+ .+++|...|.++ ++.+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 3455899999999999888777665 345667776 6666655432 568899999998 77666
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.++++. + +.-...+-.+++.-|+.+.+++-.-+-.|
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 444442 1 12223445577778888888887665443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.046 Score=51.36 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=72.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC----CC---CcEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV----PE---GDAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~----~~---~D~i~ 260 (360)
.+.+|||+=|=||.++...+... ..++|.+|+ ...++.|+++ .+++|+.+|+++.+ .. .|+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 47899999999999998776653 337888998 7788877763 46899999998732 22 29998
Q ss_pred ec------cccccCC-hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 261 MK------WILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 261 ~~------~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+- +-=.-|. ..+-..++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 71 1111122 234568899999999999999987743
|
|
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.031 Score=47.90 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=49.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-CCCc----eeecchhchhhhc
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGER----LYALNPVSKYFVS 114 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-~~~~----~y~~t~~s~~~~~ 114 (360)
..|+..|...|+.|..+||+.+|+ ++..+.+.|+.|...|+|.+... ...+ .|.+|+.+.....
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 456777776679999999999999 89999999999999999987521 0112 3788888775543
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.013 Score=49.30 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=62.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C---CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V---PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~---~~~-D~i~~ 261 (360)
.+.++||+=||+|.++.+.+.+. ..+++.+|. +..+...+++ ++++++..|+... . ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 36899999999999999988885 346777777 6666655442 4688999997652 1 233 99998
Q ss_pred ccccccCChhH-HHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDH-CLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~-~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
-=-... .. ...++..+. ..|+++|.+++ |...
T Consensus 121 DPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~-E~~~ 155 (183)
T PF03602_consen 121 DPPYAK---GLYYEELLELLAENNLLNEDGLIII-EHSK 155 (183)
T ss_dssp --STTS---CHHHHHHHHHHHHTTSEEEEEEEEE-EEET
T ss_pred CCCccc---chHHHHHHHHHHHCCCCCCCEEEEE-EecC
Confidence 432221 22 356777776 78888886655 5433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.025 Score=42.36 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 228 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D 228 (360)
.+...++|||||+|-+.--|.+. +.++.++|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccc
Confidence 45678999999999998877776 55678888
|
; GO: 0008168 methyltransferase activity |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.045 Score=36.79 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=40.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
|+..|. .++.|..+|++.+++ +..-+.+.|+.|...|++..........|.++.
T Consensus 2 il~~l~-~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 344555 358999999999999 888999999999999999965322333555554
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.041 Score=38.30 Aligned_cols=57 Identities=21% Similarity=0.384 Sum_probs=44.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+..++..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++..........|++++
T Consensus 9 ~~~il~~l~~~-~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG-PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC-CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 34456666664 4999999999999 888999999999999999975322335666665
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.11 Score=49.53 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=70.2
Q ss_pred ceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhC-----CCCCCcEEEecCCCC-CCCCC--cEEEeccccccCC
Q 018145 199 ERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDA-----PSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWD 269 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~ 269 (360)
.+++-+|||.-.+...+-+.. ++++-+.++ +.+++.. +.++...+...|+.. .+++. |+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S-~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSS-SVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceecccc-HHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 489999999998887765543 444444443 4444432 334678899999988 67654 9999999998864
Q ss_pred hh--------HHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 270 DD--------HCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 270 ~~--------~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.+ .+...+..++++|+|||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 22 2335689999999999999998874
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.04 Score=43.55 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
++.|.++||+.+++ ++..++++|+.|...|+|.... ..++.|.++....
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-CCCCCccCCCCHH
Confidence 48999999999999 9999999999999999998642 2345677764443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.1 Score=43.87 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=61.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC---------CCcEEEecCCCC-C----CC------CC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY---------AGVEHVGGNMFE-S----VP------EG 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~d~~~-~----~~------~~ 256 (360)
+...|+.+|||-=.....+....++++++.+|+|++++.-++. .+++++..|+.+ . +. ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 3458999999999999999888889999999999888764432 236789999986 2 11 12
Q ss_pred -cEEEeccccccCChhHHHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNC 280 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i 280 (360)
-++++-.++.+++++++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 578889999999999999988876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.045 Score=46.88 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=48.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.++.++..|.+.|+.|..+||+.+++ ++.-+.+.|..|...|++.+.. ..+..|.+|+.|
T Consensus 144 ~~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~-~r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG-RKGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc-CCccEEEeCCCC
Confidence 34567777776568999999999999 8889999999999999999853 145678887654
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.15 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=63.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---C---------CCcEEEecCCCCC------CCC-Cc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---Y---------AGVEHVGGNMFES------VPE-GD 257 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---~---------~~v~~~~~d~~~~------~~~-~D 257 (360)
...+||++|+|+|..+.. +.......++..|.|..++.-+. . ..|.....+-.++ .+. .|
T Consensus 86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999955544 44445777888887655543321 1 1233333322221 233 59
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|+.+.++++ ++....++..++..|..++.+++.-..+.
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999986 44556778888889988896666555543
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.064 Score=44.75 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=40.5
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|+++|...|++|.++||+.+|+ ....++++|..|...|++..
T Consensus 25 ~~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~ 68 (178)
T PRK06266 25 FEVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADY 68 (178)
T ss_pred hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 348898988789999999999999 88999999999999999995
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.07 Score=43.43 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=46.3
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++.+.+-.. .+++.|.++||+..++ ++..++++|..|...|+|.... ..+|.|.++...
T Consensus 9 YAlr~L~~LA~~----~~~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~p 70 (153)
T PRK11920 9 YAIRMLMYCAAN----DGKLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR-GRNGGVRLGRPA 70 (153)
T ss_pred HHHHHHHHHHhC----CCCcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeeecCCH
Confidence 445555544321 2237899999999999 9999999999999999999864 355678776443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.037 Score=46.98 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=60.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCC---CCC-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESV---PEG-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~---~~~-D~i~~~~vl 265 (360)
....|+|.-||.|..+..++..+|.+-.+..| |.-+..|+.+ +||+|++||+++.. .-+ |.+.+...-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD-PikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID-PVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc-HHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 45789999999999999999998876666666 7666666553 68999999998732 112 333333322
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~ 289 (360)
--|+ +.....-+-.+...++|.|.
T Consensus 173 ppwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PPWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCCCcchhhhhhhhhhhhcchhHH
Confidence 2333 33444555666666776643
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.058 Score=35.80 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=39.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|.+.|...|..|.++||+.+|+ .+.-++|=|..|...|++.+.
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 36777888789999999999999 889999999999999999974
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.066 Score=43.53 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=47.5
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.....|+.+..+||+.+++ .+.-+...++-|...|+|.. ..-+.+.+|+.|+....
T Consensus 18 l~~~~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~---~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 18 LLEEKGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEY---EPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHhccCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEE---ecCCCeEEChhhHHHHH
Confidence 3334579999999999999 88899999999999999998 46678999999885543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.057 Score=51.62 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=63.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeE---EEecchhHHHhCCCCCCcEEEecCCCC---CCCCC-cEEEecccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKA---VNFDLPHVVQDAPSYAGVEHVGGNMFE---SVPEG-DAILMKWILHC 267 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~~-D~i~~~~vlh~ 267 (360)
....+.|+|...|.|.++.+|.+. | +-+ |-.+-+..+...-.+. +-=+-.|..+ ..|.. |++-..++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhhhhh
Confidence 345689999999999999998754 2 222 1111133332222221 1112234433 34554 99999888887
Q ss_pred CChh-HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 WDDD-HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ~~~~-~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6543 466889999999999999999774
|
; GO: 0008168 methyltransferase activity |
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.063 Score=46.19 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=50.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+...+.+...+|..+||+.+++ ++..+.+.|+.|...|+|++.....+..+.+|+.|..++.
T Consensus 12 llg~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll~ 73 (217)
T PRK14165 12 LLGAVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVPRGQLITITEKGLDVLY 73 (217)
T ss_pred HHhccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHHH
Confidence 3345555446899999999999 8999999999999999999865445667999998886664
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.082 Score=46.99 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCCCC--c
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVPEG--D 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~~~--D 257 (360)
..++.++|-||+|.|...+...++ +.+ .+..+|+ ..+++..++. ++|.+..||-+. ..++. |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998887 554 3566666 5566655442 689999998765 34343 9
Q ss_pred EEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 258 AILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 258 ~i~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+|+.-..=-..|.. --..+...+.++|||||++++...+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 98863321111111 12356778899999999999977544
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.042 Score=40.30 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=47.2
Q ss_pred hhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
|+..|.. |+....+|.+.+ |+ .+..+.+-|+.|...|+|.+...... -.|++|+.|..+..
T Consensus 10 IL~~l~~-g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ-GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT-SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh-CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4556666 699999999999 88 88899999999999999988643211 25999999987653
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.063 Score=36.82 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=43.3
Q ss_pred hhhHhhhC-CCCCHHHHHHHhCcCCCCC--cCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 49 VFEIIAKA-GELSAPEIAAQLQAQNVKA--PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 49 lfd~L~~~-g~~t~~~la~~~~~~~~~~--~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
|++.|.+. +|++..+|++.+... ..+ ++.+++-|++|...|++.. .....+.+|+.|..
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~---~g~~G~~iT~~G~~ 64 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRK---VGRQGRIITEKGLD 64 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCccc---cCCcccccCHHHHh
Confidence 45566554 499999999999773 223 4789999999999997775 34445678877653
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.075 Score=40.53 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=49.6
Q ss_pred HHhhChhhHhh----hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 44 AIQLGVFEIIA----KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 44 a~~lglfd~L~----~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
..++.++..|. .+|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|...+
T Consensus 25 ~~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 25 LEELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 34455566665 4468999999999999 999999999999999999976443333 356777776544
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.061 Score=47.29 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
++....+.+|+=.|.+ ||.|.+||-..+++ .+..+..=++-|...|+|.+ +++.|++|..|..++.+
T Consensus 9 if~SekRk~lLllL~e-gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~----~~~~Y~LS~~G~iiv~k 75 (260)
T COG4742 9 LFLSEKRKDLLLLLKE-GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQ----EGDRYSLSSLGKIIVEK 75 (260)
T ss_pred HHccHHHHHHHHHHHh-CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEe----cCCEEEecchHHHHHHH
Confidence 4556678889999988 79999999999999 78888888999999999996 68999999999977654
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.018 Score=43.44 Aligned_cols=85 Identities=13% Similarity=0.247 Sum_probs=42.7
Q ss_pred cEEEeccccc----cCChhHHHHHHHHHHHhCCCCcEEEEEeeec-CCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 257 DAILMKWILH----CWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-PEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 257 D~i~~~~vlh----~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
|+|+|.+|.- ++.|+....+++++++.|+|||.|++ |+-. .+....... .....-.. ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~---~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRL---SEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS----HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhh---hHHHHhHH-----hceEEChHH
Confidence 7887766532 25788999999999999999998886 4322 110000000 00000000 011123456
Q ss_pred HHHHHHH--cCCceeeEEecC
Q 018145 332 YTELAIA--AGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~--aGf~~~~~~~~~ 350 (360)
+.+.|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 7787777 699998876554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.087 Score=33.85 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=36.7
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+++.|...++.|..+|++.+++ .+.-+.+.|..|...|+|..
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 4555555568999999999999 89999999999999999996
|
|
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.081 Score=45.09 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 37 LPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 37 ~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.-+++...++..|++.|+..||+.+.|||+++|+ ++.-+..-+..|+..|++.-+
T Consensus 16 v~kalaS~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4567888899999999999899999999999999 888899999999999999864
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.059 Score=35.05 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHH
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~ 85 (360)
-.+|.+|.+.|-||. +. ..|.++||+.+|+ .+.-+...||-
T Consensus 6 ~e~L~~A~~~GYfd~-PR--~~tl~elA~~lgi----s~st~~~~LRr 46 (53)
T PF04967_consen 6 REILKAAYELGYFDV-PR--RITLEELAEELGI----SKSTVSEHLRR 46 (53)
T ss_pred HHHHHHHHHcCCCCC-CC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 468999999999998 44 5899999999999 66666666654
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.061 Score=43.62 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=41.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|+++||+..|+ ++.+++++|..|...|+|.... ..+|.|.++...+
T Consensus 25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~~ 72 (150)
T COG1959 25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR-GKGGGYRLARPPE 72 (150)
T ss_pred cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec-CCCCCccCCCChH
Confidence 7899999999999 9999999999999999999764 3467888775444
|
|
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.084 Score=42.33 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=45.6
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+++++.+.++.+ ..+.+.|.++||+.+|+ ++..+++.|+.|...|+|.... ..++.|.++.
T Consensus 9 YAl~~~i~la~~---~~g~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~-G~~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PEGRMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR-GKNGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CCCCccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec-CCCCCeeecC
Confidence 455555555543 22237899999999999 9999999999999999999754 2445676653
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.089 Score=41.50 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
++.|..+||+++++ ++..+.+.|+.|...|+|.... ...+.|.+..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~-g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR-GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC-CCCCChhhcC
Confidence 48999999999999 9999999999999999998632 1345566643
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.098 Score=41.52 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=43.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
..|++.| +.|..|..+||+++|+ +...++..|..|+..|.|.+........|++.+
T Consensus 14 ~eILE~L-k~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~ 69 (165)
T PHA02943 14 IKTLRLL-ADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVEIGRAAIWCLDE 69 (165)
T ss_pred HHHHHHH-hcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEeecceEEEEECh
Confidence 3466777 4478999999999999 888999999999999999985422333455554
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.51 Score=37.83 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred hhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 49 VFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++..|... ++.|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 45666543 36899999999999 889999999999999999986432222 4678888876554
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.14 Score=47.42 Aligned_cols=107 Identities=16% Similarity=0.328 Sum_probs=73.6
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc---hhHHHhC-C------------CCCCcEEEecCCCC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL---PHVVQDA-P------------SYAGVEHVGGNMFE 251 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a-~------------~~~~v~~~~~d~~~ 251 (360)
+.+.+. ..+.....|+|+|.|.....++.......-+++.+ |.-+... + +...++.+.+++.+
T Consensus 184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 334444 56778999999999999987776654444455544 3322221 1 12458999999987
Q ss_pred C------CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 252 S------VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 252 ~------~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+ .+++++|+.+++..+ ++ ...=+.++..-+++|-+++-.++..+
T Consensus 263 ~~~v~eI~~eatvi~vNN~~Fd--p~-L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAFD--PE-LKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHHHHHhhcceEEEEecccCC--HH-HHHhhHHHHhhCCCcceEeccccccc
Confidence 3 234599999998853 43 33445588899999999999998876
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.081 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|-|+.|||+.+|++ .+..+.+.|++|+..|+|.+.
T Consensus 25 ~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 25 PPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp ---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 77999999999993 478899999999999999974
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.21 Score=36.37 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHhhChhhHhhhC-C-CCCHHHHHHHhCcCCCCCcCcHHHHHH----------HHhcCcce-eecccCCCceeecchh
Q 018145 42 QAAIQLGVFEIIAKA-G-ELSAPEIAAQLQAQNVKAPMMLDRMLR----------LLVSHRVL-ECSVSGGERLYALNPV 108 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g-~~t~~~la~~~~~~~~~~~~~~~~~L~----------~L~~~g~l-~~~~~~~~~~y~~t~~ 108 (360)
+.=++..|+..|.+. + +.++.|||+.+++ ++..+..-|+ .|+.+|+| .+........|++|+.
T Consensus 7 rS~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~ 82 (90)
T PF07381_consen 7 RSKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEK 82 (90)
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChh
Confidence 355677888888876 3 8999999999999 7777776664 48899999 3332234448999998
Q ss_pred chhhh
Q 018145 109 SKYFV 113 (360)
Q Consensus 109 s~~~~ 113 (360)
+..+.
T Consensus 83 G~~~~ 87 (90)
T PF07381_consen 83 GKRIA 87 (90)
T ss_pred hhhHH
Confidence 87654
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.055 Score=48.72 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=67.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC------CCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP------EGDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~------~~D~i~~ 261 (360)
.+.+|||+=|=||.++...+.. ...+++.+|. ..+++.++++ .+++++..|+++... ..|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999876653 3557899998 7777777642 578999999987321 2299987
Q ss_pred ---ccccccCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 ---KWILHCWD-DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ---~~vlh~~~-~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.=..+. ..+-.++++.+.+.|+|||.|++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 11111111 23456889999999999999876553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.13 Score=39.75 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=44.8
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.+=..+.|++.++..+|.|+.|+|+..|- +...+.|-|+.|+..|+|...
T Consensus 61 vLsp~nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 61 VLSPRNLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HhChhHHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 334456778888998889999999999999 889999999999999999974
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.11 Score=39.33 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=41.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++.+
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 45678888888789999999999999 89999999999999999984
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.15 Score=35.80 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=38.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|=|.|...|..++.+||.+++. +++.++..|..|+++|-|++.
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3467777789999999999999 999999999999999999974
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.12 Score=42.31 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.7
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|+++|...|.+|-++||+.+|+ +..-++++|..|...|++..
T Consensus 17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~ 60 (158)
T TIGR00373 17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADY 60 (158)
T ss_pred HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcee
Confidence 457888886679999999999999 89999999999999999975
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.84 Score=42.57 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC---------------------------------------eEE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI---------------------------------------KAV 225 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 225 (360)
+..++..- ++.+...++|==||+|.++++.+-..+++ .++
T Consensus 180 AaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444433 37777899999999999999887776532 256
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC--CCcEEEeccc--cccCChh-HHH----HHHHHHHHhCCCC
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--EGDAILMKWI--LHCWDDD-HCL----RILKNCYKAVPGN 287 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~--~~D~i~~~~v--lh~~~~~-~~~----~~L~~i~~~Lkpg 287 (360)
++|+ +.+++.|+.+ +.|+|..+|+.+ ..+ +.|+|+++-- .. +.++ .+. .+.+.+++.++--
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCC
Confidence 8888 8899888754 458999999987 333 3499998421 11 1122 122 3445555666655
Q ss_pred cEEEEEe
Q 018145 288 GKVIVMN 294 (360)
Q Consensus 288 G~lli~e 294 (360)
++.+++.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6666654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.092 Score=50.26 Aligned_cols=99 Identities=22% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--C-CC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--S-VP- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~-~~- 254 (360)
....+.+. ..+..+++|+=||.|.++..+++.. .+++++++ +++++.|+++ .+++|..+|.++ . ..
T Consensus 283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444444 4567899999999999999999654 45677776 8888877653 469999999887 2 21
Q ss_pred -CC-cEEEeccccccCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 018145 255 -EG-DAILMKWILHCWDDDHCL-RILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 255 -~~-D~i~~~~vlh~~~~~~~~-~~L~~i~~~LkpgG~lli~ 293 (360)
.. |+|++- =|...+. .+++.+. .++|...++|.
T Consensus 360 ~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 360 GYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred cCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 12 888872 1222333 4455544 45666666664
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.6 Score=36.73 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=52.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC---C--cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE---G--DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~---~--D~i~~~~vl 265 (360)
.+.+||=||-.. ..+.+++-..+..+++++|+ +.+++..++. -.|+.+..|+.+++|+ + |+++.-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 458999998554 34445555666778888888 6666654321 2499999999998774 2 99988422
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++.+.+.-++.+...+||..|....
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEE
Confidence 4456778889999999997664433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.19 Score=34.65 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=42.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
++.++..|.. ++.|..+||+.+|+ ..+.+++-++.|.+.|+.... . +..|.+.
T Consensus 2 ~~~il~~L~~-~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~--~-~~g~~l~ 54 (69)
T TIGR00122 2 PLRLLALLAD-NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT--V-GKGYRLP 54 (69)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe--c-CCceEec
Confidence 3557778886 58999999999999 889999999999999996543 2 4556554
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.42 Score=39.99 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=61.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCC---CC-C--CcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFES---VP-E--GDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~~-~--~D~i~~~ 262 (360)
.+.++||+=+|+|.++.+-+.++ ..+++.+|. ..+....++ ..+++++..|...- .+ . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 36899999999999999988886 345666665 444444333 25788888888741 11 2 3999984
Q ss_pred ccccc-CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 263 WILHC-WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 263 ~vlh~-~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
=-.+. +-+....-.+-.-..+|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 44441 111121222222467899999887643
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.37 Score=41.35 Aligned_cols=94 Identities=23% Similarity=0.335 Sum_probs=66.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC----CC--C---eEEEecchhHHHhCCCCCCcEEEecCCCCC---------CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY----PQ--I---KAVNFDLPHVVQDAPSYAGVEHVGGNMFES---------VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~-- 254 (360)
+++..|++|+=...|.++..+.++. ++ - .++.+|+..|.. .++|.-+.+|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 4567899999999999998888765 21 1 278888765543 36788899998762 12
Q ss_pred CCcEEEecc-----ccccCCh----hHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 EGDAILMKW-----ILHCWDD----DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 ~~D~i~~~~-----vlh~~~~----~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+|+|++-. -+|+++. +-....|.-...+|||||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 239999844 4777653 2233556677789999999874
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.12 Score=50.46 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=57.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDG 118 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~ 118 (360)
.+..++..|...++.|..+||+.+++ ++..+.+.++.|.+.|+|++.. .....|.+|+.|+.++....+
T Consensus 7 ~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~-~~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEE-RVEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEe-eeEEEEEECHHHHHHHHhcCH
Confidence 45667777777678999999999999 8899999999999999999853 234579999999988876654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.29 Score=43.93 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=55.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCe-EEEecc-hhHHHhCCCC-----CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~ 251 (360)
+.++.++.+. ..+...++|.-=|.|.++..+++.+|... .+++|. |.+++.|++. +|+.+++.+|.+
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 3456777776 66779999999999999999999998754 899998 9999988763 588888887654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.18 Score=47.40 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=52.2
Q ss_pred CCcEEEecCCCC---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 240 AGVEHVGGNMFE---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 240 ~~v~~~~~d~~~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
++|+++.+++.+ ..|.+ |.+++..++-+++++...+.++.+.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999999877 34444 9999999999999999999999999999999999997766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.2 Score=37.02 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.5
Q ss_pred HHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 61 APEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 61 ~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+.+||+.+++ ++..+.+.++.|...|+|.+. .+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~---~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYE---PYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEc---CCCceEechhHHHHH
Confidence 5689999999 899999999999999999983 445799998887654
|
iron dependent repressor |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.19 Score=32.89 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=32.5
Q ss_pred ChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCc
Q 018145 48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR 90 (360)
Q Consensus 48 glfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g 90 (360)
.|+..| ...++.|.++||+.+++ +.+-+++-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 456667 44457999999999999 9999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.3 Score=41.42 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHH----hCCCC--CCcEEEecCCCC---CCCC---CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQ----DAPSY--AGVEHVGGNMFE---SVPE---GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~~--~~v~~~~~d~~~---~~~~---~D~i 259 (360)
.+++.+|||.-.+.|.=+..+++..++ ..++.+|. +.-+. +.++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567899999999999999999998876 45578886 43333 22221 336677777643 1221 3777
Q ss_pred Ee------cccc-------ccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LM------KWIL-------HCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~------~~vl-------h~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
++ ..++ +.+..+++ .++|..+.+.|||||+|+-.+-...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 65 3334 33333322 3689999999999999998876553
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.21 Score=32.93 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=30.7
Q ss_pred CC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+ |..+||+.+|+ +...+++.|+.|...|++..
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 45 89999999999 88999999999999999986
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.089 Score=38.57 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=46.7
Q ss_pred hhHhh--hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 50 FEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 50 fd~L~--~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
||.|. ..|+....-|.-.+++ +....+..++.|+..|++..........|.+|+.|..|+..
T Consensus 21 ~dIL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle~ 84 (95)
T COG3432 21 FDILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLEK 84 (95)
T ss_pred HHHHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHHH
Confidence 34444 3468888889999999 89999999999999996665311112269999999988653
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.15 Score=49.04 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHhhChhhHhhhCCC-CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCC
Q 018145 44 AIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 44 a~~lglfd~L~~~g~-~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
+.+..|+..|...++ .+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.|..++...+++
T Consensus 3 ~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~l~~G~PE 74 (492)
T PLN02853 3 MAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQD-IKRETWVLTEEGKKYAAEGSPE 74 (492)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 456778888887555 899999999999 8889999999999999998764 4667899999999999887764
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.12 Score=29.63 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcce
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 888999999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.43 Score=37.04 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeeccc---
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS--- 97 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~--- 97 (360)
.++++..++.+.+-|..-+++...+ |+....+|-+.++ + .+..+.+-|+.|+..|+|.+...
T Consensus 10 ~c~~~~~l~~ig~kW~~lIl~~L~~----------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~ 75 (120)
T COG1733 10 PCPVEEALEVIGGKWTLLILRDLFD----------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEE 75 (120)
T ss_pred CCCHHHHHHHHcCccHHHHHHHHhc----------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCC
Confidence 5678888899999998888876543 5889999999988 8 88899999999999999998643
Q ss_pred CCCceeecchhchhhh
Q 018145 98 GGERLYALNPVSKYFV 113 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~ 113 (360)
...-.|++|+.|..+.
T Consensus 76 PprveY~LT~~G~~L~ 91 (120)
T COG1733 76 PPRVEYRLTEKGRDLL 91 (120)
T ss_pred CceeEEEEhhhHHHHH
Confidence 1134699999988654
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.082 Score=49.39 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNM 249 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~ 249 (360)
..+.+++.++ ..+. +|||+=||.|.++..+++... ++++++. +++++.|+.. .+++|+.++.
T Consensus 185 l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 185 LYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 3445555555 3443 899999999999999998864 5777776 8888877643 5788988765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=2 Score=35.86 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred hhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++-++..|.. .++.|..+||+.+++ +...+.++++-|+..|+|++.....+. ...+|+.|..++.
T Consensus 57 q~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 57 LFMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3445666653 247899999999999 889999999999999999986542222 4678888876654
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.48 Score=31.90 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 59 ~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.|..+||+.+++ +...+++.|..|...|+|+.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 469999999999 88899999999999999986
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.78 Score=42.27 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC---CCCCCCC-CcEEEeccccccC
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFESVPE-GDAILMKWILHCW 268 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~~~~-~D~i~~~~vlh~~ 268 (360)
.+++.+|+=+|.| -|.++..+++... .+++++|. ++-.+.|++...-.++... ..+...+ .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567888888876 5688999999876 99999998 7777777776554555543 2222222 488887543 2
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..+....+.|++||+++++-..
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 3477888899999999998865
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.24 Score=33.24 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.++.+..+||+.+|+ .+.-+...++-|...|+|+..
T Consensus 19 ~~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 19 EGGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp CTSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 4469999999999999 888999999999999999974
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.78 E-value=3.3 Score=34.18 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=74.0
Q ss_pred EEcCCcchHHHHHHhhCC---CCeEEEecc-hhHHHhCCC---------CCCcEEEe-cCCCC--C-C--CCC--cEEEe
Q 018145 203 DVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDAPS---------YAGVEHVG-GNMFE--S-V--PEG--DAILM 261 (360)
Q Consensus 203 DiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~~-~d~~~--~-~--~~~--D~i~~ 261 (360)
=||=|.=.++..|++.++ ++.++.+|. ..+.+.... ..++++.. .|+.+ . . ... |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 378888899999999987 445677775 333333321 13444443 36554 1 2 122 99988
Q ss_pred ccccccC-----------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 262 KWILHCW-----------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 262 ~~vlh~~-----------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++----. ..+-+..+++.+.+.|+++|.+.|.-...+. ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 6532220 0123457889999999999999985532211 1111
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 24577888999988887765
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.34 Score=37.28 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhcC
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~~ 115 (360)
.+-.+..++..|...++.+..+||+.+++ ++..+.+.++-|+..|+|.+.....+. .+.+|+.|..+...
T Consensus 20 lt~~q~~~L~~l~~~~~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHHHH
Confidence 34456667777777655555999999999 899999999999999999997542222 57888888766554
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.1 Score=42.26 Aligned_cols=109 Identities=22% Similarity=0.354 Sum_probs=59.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHH----HHHhhC---CCCeEEEecchh-----HHHhCCCC-------CC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLS----MITSKY---PQIKAVNFDLPH-----VVQDAPSY-------AG--VEH 244 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~----~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~~--v~~ 244 (360)
+.|++.+. -.+..+|+|+|.|.|.-=. .|+.+- |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 46777777 4567899999999995433 444432 678889888622 22222211 12 344
Q ss_pred Eec--CCCCCC-------CCCcE--EEeccccccCChh------HHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 245 VGG--NMFESV-------PEGDA--ILMKWILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 245 ~~~--d~~~~~-------~~~D~--i~~~~vlh~~~~~------~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
... +-.+++ ..+++ |-+...||++.++ ....+|+.+ +.|+|. .++++|.-.
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~-vvv~~E~ea 246 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPK-VVVLVEQEA 246 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCC-EEEEEeecC
Confidence 442 222211 12333 3356667887632 234466555 578997 445555544
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.45 Score=39.99 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=50.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ +..-+-++++-|+..|+|.+....++. ...+|+.|..+..
T Consensus 47 q~~iL~~L~~~~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 47 EHHILWIAYHLKGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 3456667776679999999999999 878899999999999999986432222 4678888876654
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.9 Score=31.86 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=56.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEEeccccccCChh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWDDD 271 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~~~~vlh~~~~~ 271 (360)
....+|++||-|.=......+++. +..++..|+.+- .++ .+++++..|+++|.- ++ |+|++-. |++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 345699999988664444444433 266777776222 333 679999999999632 34 9998854 567
Q ss_pred HHHHHHHHHHHhCCCCcEEEEE
Q 018145 272 HCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+....+-.+.++++ ..++|.
T Consensus 82 El~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 82 ELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred HHHHHHHHHHHhhC--CCEEEE
Confidence 77888888888775 444443
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.41 Score=42.24 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=48.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+..++-+|..-|+.|+.|||+..|+ +...+..+|+-|...|++.... ..+..|+.-+-..
T Consensus 18 Ea~vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~ 77 (247)
T COG1378 18 EAKVYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEE 77 (247)
T ss_pred HHHHHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHH
Confidence 4445666766689999999999999 9999999999999999999753 4666787665544
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.49 Score=35.02 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++|..|||+.+|+ +..-+.+.|..|+..|+|.+. ...+.|+.+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 38999999999999 888999999999999999974 233566554
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.4 Score=37.91 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.5
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
..|+.|.+|||-+.|+ ..+.+-..|.++.+-|-|.+..-.+.=+|++.
T Consensus 3 q~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 3 QEGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred ccCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 3589999999999999 89999999999999999998742233366664
|
The region in question is approximately 150 amino acid residues long. |
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.57 Score=35.92 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=42.4
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCC-CCcCcHHHHHHHHhcCcceeecccCCC-ceeecc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNV-KAPMMLDRMLRLLVSHRVLECSVSGGE-RLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~-~~~~~~~~~L~~L~~~g~l~~~~~~~~-~~y~~t 106 (360)
+.-|++.|... ++.|+++|.+.+.-+.| -+..-+.|.|+.|+..|+|.+....++ .+|..+
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 44577777663 48999999999843111 066779999999999999998642222 356543
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.9 Score=40.73 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC----CCC---CC-CC-C-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN----MFE---SV-PE-G-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d----~~~---~~-~~-~-D~i~~~ 262 (360)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++...+.++... +.+ .. +. + |+|+-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 889999999986545777765 6666666554233333221 111 11 11 3 877653
Q ss_pred cc---------------cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WI---------------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~v---------------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-- |+..+ +....+..+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLET--DRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCccccccccccccccccccc--CchHHHHHHHHHhccCCEEEEEcC
Confidence 21 11112 124578889999999999998854
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.34 Score=46.81 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=59.3
Q ss_pred HHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCC
Q 018145 44 AIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 44 a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
..+..|+..|.+ .+..+.++||+.+|+ ++..+.+.+..|.+.|+++... .....|.+|+.|..++...++.
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~-~~~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEM-KKSNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 345567777776 357999999999999 8889999999999999998764 4667899999999999887764
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.79 Score=32.29 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.|+...+||+.+++ ++.-++.-|..|.++|+|+... ...+.|..|..+-.++
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p-~~s~GriPT~~aYr~~ 73 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP-HPSGGRIPTDKAYRAL 73 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC-CCCCCCCcCHHHHHHH
Confidence 49999999999999 8889999999999999998311 1346677777664443
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.82 Score=46.71 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-------C-----CCeEEEecc-h---hHHHhCC----------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-------P-----QIKAVNFDL-P---HVVQDAP---------------------- 237 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------- 237 (360)
++.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999998776666444 3 367777774 2 1111110
Q ss_pred CC-------C--CcEEEecCCCCC---CCC-CcEEEeccccc-cCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 238 SY-------A--GVEHVGGNMFES---VPE-GDAILMKWILH-CWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 238 ~~-------~--~v~~~~~d~~~~---~~~-~D~i~~~~vlh-~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.. . .+++..||+.+. +.. .|++++-..-- .-|+-.-..+|+.+++.++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 00 1 244666777652 222 38887733221 11222335789999999999998874
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.8 Score=38.39 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=110.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCCChHHHhhcc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~ 128 (360)
|+.+|-. .-+.-.|++...+ +.+.+..+++.|...|+|.. +.+...+|..|..|+....-....+.. ..
T Consensus 27 vl~ail~--~~d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~----~~g~v~~TekG~E~~e~~gi~~~~~~~-C~ 95 (354)
T COG1568 27 VLSAILA--TNDFWKIVDYSDL----PLPLVASILEILEDEGIVKI----EEGGVELTEKGEELAEELGIKKKYDYT-CE 95 (354)
T ss_pred HHHHHHc--CcchHhhhhhccC----CchHHHHHHHHHHhcCcEEE----ecCcEeehhhhHHHHHHhCCCcccccc-cc
Confidence 4445554 2388889998888 88899999999999999997 345589999998887654422111110 00
Q ss_pred CC---hhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEc
Q 018145 129 LD---KVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVG 205 (360)
Q Consensus 129 ~~---~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG 205 (360)
+. ...+..+..|-+- +-++....|+....|.+.....-....+..+-.-.+--.+..|+-+|
T Consensus 96 ~CeGrgi~l~~f~dll~k---------------f~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG 160 (354)
T COG1568 96 CCEGRGISLQAFKDLLEK---------------FREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG 160 (354)
T ss_pred CcCCccccchhHHHHHHH---------------HHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc
Confidence 00 0001111111111 11112222222222222211110000000000000112357899998
Q ss_pred CCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----C--CCCcEEEecCCCCCCCCC-----cEEEeccccccCChhHH
Q 018145 206 GGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----S--YAGVEHVGGNMFESVPEG-----DAILMKWILHCWDDDHC 273 (360)
Q Consensus 206 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~v~~~~~d~~~~~~~~-----D~i~~~~vlh~~~~~~~ 273 (360)
-.--.+.+++-..-.-++.++|+ ...+.... + .++++....|..+|+|+. |+++.--. .+-+..
T Consensus 161 -DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp---eTi~al 236 (354)
T COG1568 161 -DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP---ETIKAL 236 (354)
T ss_pred -CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch---hhHHHH
Confidence 33444444333332234555665 44443222 2 267899999999998853 88876211 011234
Q ss_pred HHHHHHHHHhCCCC---cEEEEEe
Q 018145 274 LRILKNCYKAVPGN---GKVIVMN 294 (360)
Q Consensus 274 ~~~L~~i~~~Lkpg---G~lli~e 294 (360)
..+|.+=..+||.- |++-+.-
T Consensus 237 k~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 237 KLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred HHHHhccHHHhcCCCccceEeeee
Confidence 45566666777755 7776643
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.45 Score=39.20 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=43.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..+..|+..|.+.|..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 14 ~~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 14 RIDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 367889999999899999999999999 88899999999999999984
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=89.36 E-value=1 Score=35.00 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=46.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC---CC-cEEEeccccccCChh
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP---EG-DAILMKWILHCWDDD 271 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~---~~-D~i~~~~vlh~~~~~ 271 (360)
...+|++||-|.=.-....++.. +..+++.|. +. .+. .+++++..|+++|-. ++ |+|++-+ |+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 34699999998775544444443 277888887 44 222 679999999999533 24 9999865 455
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....+.++.+.. |.-++|...
T Consensus 82 El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-B
T ss_pred HHhHHHHHHHHHh--CCCEEEECC
Confidence 6666777777765 355555443
|
; PDB: 2K4M_A. |
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.5 Score=38.40 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=42.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|..+|..|..+||+++|+ .+.-+.+=++.|...|++..
T Consensus 10 ~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 10 LDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 57788999999889999999999999 88899999999999999984
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.24 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=32.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|++.|...|.++-++||+.+|+ ++.-++++|..|...|++..
T Consensus 18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 6778876679999999999999 89999999999999999975
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.87 Score=37.76 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh--CcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 35 VVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 35 ~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
.|...+++..+.+. . +..++++||+++ ++ ...-++.-|+.|...|+++. .+++.|..|..+-.
T Consensus 23 ~W~~~~ir~l~~l~------~-~~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k---~~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 23 SWYHPAIRELLPLM------P-FAPDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKK---DGDGKYVQTDKSLT 87 (171)
T ss_pred hhHHHHHHHHhhcC------C-CCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEE---CCCCcEEEecceee
Confidence 34445555544432 1 233899999999 99 88899999999999999998 45679998876543
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.9 Score=35.05 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=44.6
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..+...|.+...+.|.+|..+++..+|+ +-.-+++.++.|++.|-|..+
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 45567778888888899999999999999 888999999999999999974
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.67 Score=41.26 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcE
Q 018145 211 TLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 211 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ 289 (360)
++.+|.+..++.+++++|. +..++.+.+.+-+.-...+ .+.+.+.|+|+++ .|......+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCcE
Confidence 4677888889999999998 7777777544333333332 2233445999886 4666788889998888888864
Q ss_pred EE
Q 018145 290 VI 291 (360)
Q Consensus 290 ll 291 (360)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.71 Score=37.36 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=42.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..|...|.+.++.|..+||+++|+ ++..+.+-++-|...|++...
T Consensus 9 ~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 9 IDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 56678889999889999999999999 888999999999999999963
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.5 Score=38.54 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=65.1
Q ss_pred cceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCC--------C-CCCCC-cEEEecccc
Q 018145 198 VERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMF--------E-SVPEG-DAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~--------~-~~~~~-D~i~~~~vl 265 (360)
..+|+-+|||. |.++..+++.+...++++.|. +.-++.|++....+.+.-.-. . ....+ |+++=+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34999999995 666688888888889999998 888888876422222221111 1 11223 88875443
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
....+..+.++++|||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998876544
|
|
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.79 Score=38.30 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=51.5
Q ss_pred HHHHHHHhhChhhHhhhCC-CCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhchh
Q 018145 39 MATQAAIQLGVFEIIAKAG-ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY 111 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g-~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~~ 111 (360)
.+|.--.++.|++.|...+ +.|+.+|++.+ ++ +..-+.|.|+.|+..|+|...... ....|++++.+-.
T Consensus 6 ~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~ 81 (178)
T PRK06474 6 EILMHPVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAK 81 (178)
T ss_pred HhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceee
Confidence 4555567888889887754 49999999999 57 777899999999999999975321 1135777766543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.49 E-value=0.67 Score=44.59 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE 251 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~ 251 (360)
++....++|+=||||.++.++++.. .+++++.+ |+.++.|+.. .+.+|+.|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6677999999999999999888875 45666666 8888888654 468899994444
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.7 Score=36.77 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=47.2
Q ss_pred eEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCCC-C-cEEEeccccccCCh-------hHHHHHHHHHHH
Q 018145 223 KAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVPE-G-DAILMKWILHCWDD-------DHCLRILKNCYK 282 (360)
Q Consensus 223 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~i~~ 282 (360)
++.++|+ +++++.++++ ++|+++..+=.+ .+++ . |+++++.-----+| +.-...|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4678898 7788776653 578888876544 3455 3 88877532211112 334578999999
Q ss_pred hCCCCcEEEEEeeec
Q 018145 283 AVPGNGKVIVMNSIV 297 (360)
Q Consensus 283 ~LkpgG~lli~e~~~ 297 (360)
.|+|||.+.|+-+.-
T Consensus 81 lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 81 LLKPGGIITIVVYPG 95 (140)
T ss_dssp HEEEEEEEEEEE--S
T ss_pred hhccCCEEEEEEeCC
Confidence 999999999987643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.1 Score=43.35 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=49.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhC--cCCCCCcCcHHHHHHHHhcCcceeecc-cCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQ--AQNVKAPMMLDRMLRLLVSHRVLECSV-SGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~--~~~~~~~~~~~~~L~~L~~~g~l~~~~-~~~~~~y~~t~~s~~~~~ 114 (360)
++-|+..|.+ ++.+.-+|++.++ + .+..+.+.|+.|...|+|+... ......|++|+.+..++.
T Consensus 373 r~~IL~~L~~-~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l~ 439 (442)
T PRK05638 373 KLEILKILSE-REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLLE 439 (442)
T ss_pred HHHHHHHHhh-CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHHH
Confidence 4446777776 5899999999998 7 7889999999999999998531 112336999988876543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.44 E-value=1.2 Score=41.19 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=40.0
Q ss_pred CccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC----C----CCeEEEecc-hhHHH
Q 018145 166 NPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----P----QIKAVNFDL-PHVVQ 234 (360)
Q Consensus 166 ~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 234 (360)
-|+..+.|-+......- +....+. .+.+..+++||.|+|.++..+++.. | .+++..++. |...+
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 35566666654433222 1222232 4456899999999999999888764 4 467777776 54443
|
|
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=86.42 E-value=0.98 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHH
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLR 84 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~ 84 (360)
++..|+..|.+.|..|..+||+.+|+ .+..+.+=++
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lgl----S~~~v~~Ri~ 39 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELGL----SESTVRRRIR 39 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHTS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHCc----CHHHHHHHHH
Confidence 45678888988889999999999999 6655544333
|
... |
| >TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY | Back alignment and domain information |
|---|
Probab=86.39 E-value=4.7 Score=35.08 Aligned_cols=62 Identities=27% Similarity=0.309 Sum_probs=48.8
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 27 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+.+++-+-.+.+=+.+.. .||+.|.. .|-++..+||+++|+ ....+++=++.|++.|+++.
T Consensus 168 a~Vq~Ai~tLSySEleAv~--~IL~~L~~~egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 168 AAVQMAINTLSYSELEAVE--HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHHHHhccHhHHHHHH--HHHHHhccccccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 3555555555555444443 47888888 479999999999999 88899999999999999996
|
This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.23 E-value=3.8 Score=36.90 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=56.0
Q ss_pred ceEEEEcCC--cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCC-CCCCCCCcEEEeccccccCChhHHH
Q 018145 199 ERLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNM-FESVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 199 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~-~~~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
.+|+=+|.| .|.++..+.+..+...+++.|. ...++.+...+-+.-...+. ......+|+|+++ .|.....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHHHH
Confidence 456666666 4577777777778888899987 45555554332222222222 1233345999886 4666778
Q ss_pred HHHHHHHHhCCCCcEE
Q 018145 275 RILKNCYKAVPGNGKV 290 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~l 290 (360)
.+++++...|+||..+
T Consensus 79 ~~l~~l~~~l~~g~iv 94 (279)
T COG0287 79 EVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHhcccCCCCCEE
Confidence 8999999999998643
|
|
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.16 E-value=1.1 Score=42.88 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.|.|.++|++++++ +++.++++|+.|...|++.+ .+++.|.+.
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~---~~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR---GERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe---cCCCceEec
Confidence 48999999999999 99999999999999999996 344567555
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=1.3 Score=38.81 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHhhcccCCCcc--eEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHH
Q 018145 187 RILEHYEGFQNVE--RLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVV 233 (360)
Q Consensus 187 ~i~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~ 233 (360)
.+++++. ++++. +|||.=+|.|..+..++.. +++++.++. |.+.
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~va 123 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVA 123 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHH
Confidence 4555554 56555 9999999999999999988 556888886 4433
|
|
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=1 Score=39.91 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=41.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|.+.|.+.|..+..+||+.+|+ .+.-++|-|+.|.+.|++.+.
T Consensus 7 ~~~Il~~l~~~~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQLGFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3457888888889999999999999 888999999999999999873
|
|
| >PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=85.62 E-value=0.83 Score=30.81 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=34.8
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|++.|-..|+.|..+|.+.+++ +++.++.-|-.|..++++..
T Consensus 18 V~~~Ll~~G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 18 VGEVLLSRGRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHC-SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 5666666689999999999999 89999999999999999985
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.54 E-value=4 Score=37.32 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=49.9
Q ss_pred cceEEEEcCCcc--hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHH
Q 018145 198 VERLVDVGGGFG--VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 198 ~~~vLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
..+|.=||+|.- .++..+.+.....+++++|. ++..+.+++..-......+..+.....|+|+++- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 357888988752 34444444433346778887 5555555432211111112111233449988764 444456
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 018145 275 RILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~lli 292 (360)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888875543
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=85.08 E-value=0.83 Score=31.92 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.4
Q ss_pred HHHHHHHhhChhh-----HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 39 MATQAAIQLGVFE-----IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 39 ~~l~~a~~lglfd-----~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++..+.+.|..+ .+.- +.|-++||+.+|+ ...-+.+.|+.|...|++.. ..+.+...
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~~--~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~----~~~~i~I~ 68 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIPL--PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV----KRGKIIIL 68 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEEE--ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE----ETTEEEES
T ss_pred HHHHHHHHHCCCCCCCCceEEe--cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE----cCCEEEEC
Confidence 4455556666541 2222 8999999999999 88899999999999999996 34555544
|
... |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.4 Score=39.40 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=55.1
Q ss_pred hhHHHhCCCC-CCcEEEecCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 230 PHVVQDAPSY-AGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 230 ~~~~~~a~~~-~~v~~~~~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+.+.|.+++. .||.++++|+.+- .|.+ |-|++..+=.++++.....++.++.+.+.||.++++-.....
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~ 370 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEV 370 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecccce
Confidence 4555555443 6899999999772 2434 999999999989999999999999999999999999665443
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=84.20 E-value=1.3 Score=40.01 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=39.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEec----CCCCCCC---CC-cEEE
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGG----NMFESVP---EG-DAIL 260 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----d~~~~~~---~~-D~i~ 260 (360)
..++||||+|....=--|..+..+.++++.|+ +..++.|++. .+|+++.. +++..+. +. |+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 57999999998855333333334889988888 8788877642 57887754 3444221 22 9999
Q ss_pred eccccccC
Q 018145 261 MKWILHCW 268 (360)
Q Consensus 261 ~~~vlh~~ 268 (360)
|+=-+|.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98888863
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=8.7 Score=37.77 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=61.4
Q ss_pred CCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC--------------C-------
Q 018145 196 QNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE--------------S------- 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~--------------~------- 252 (360)
.++.+|+-+|||. |..+...++... .+++++|. ++..+.+++. +.++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3578999999995 556666777765 47999998 7777877664 23332221111 1
Q ss_pred -----CCCCcEEEeccccccCChhHHHHH-HHHHHHhCCCCcEEEEEee
Q 018145 253 -----VPEGDAILMKWILHCWDDDHCLRI-LKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 253 -----~~~~D~i~~~~vlh~~~~~~~~~~-L~~i~~~LkpgG~lli~e~ 295 (360)
....|+++-.-.... .....+ .+...+.+||||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012399987654322 112344 5999999999999887653
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=84.11 E-value=1.6 Score=34.07 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCce
Q 018145 274 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNL 353 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 353 (360)
..+++++++.++|||.+.-.. ....+++.|.++||.+.+....+..-
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys---------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYS---------------------------------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEee---------------------------------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 468999999999998766311 11236789999999988777666555
Q ss_pred eEEEEeC
Q 018145 354 YIMEFFK 360 (360)
Q Consensus 354 ~vi~~~k 360 (360)
.++.+.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 5655543
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=83.94 E-value=7.9 Score=28.61 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=49.5
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc------CCHHHHHHHHH
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE------RTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~t~~e~~~ll~ 337 (360)
+|=|++.++..++|.++...-+ |.+++. +.... + ....+.. ..-.++++.. ..++++.+.++
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifT-fAP~T----~----~L~~m~~-iG~lFP~~dRsp~i~~~~e~~l~~~l~ 71 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFT-FAPRT----P----LLALMHA-IGKLFPRPDRSPRIYPHREEDLRRALA 71 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEE-ECCCC----H----HHHHHHH-HhccCCCCCCCCcEEEeCHHHHHHHHH
Confidence 4556899999999999887654 555542 22111 1 1111111 1111222221 26789999999
Q ss_pred HcCCceeeEEecCCcee---EEEEe
Q 018145 338 AAGFKGINFASCVCNLY---IMEFF 359 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~---vi~~~ 359 (360)
++||++.+......+.+ .+|++
T Consensus 72 ~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 72 AAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred hCCCeeeecccccCcChHHHHhhcc
Confidence 99999998877765433 44544
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=83.93 E-value=1 Score=31.65 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=22.1
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHH
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L 86 (360)
++..|+++.|+|.++||.++|+ +.+-++..|..+
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~----~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW----PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT------HHHHHHHHHH-
T ss_pred HHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHhC
Confidence 7788998669999999999999 555555444443
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.7 Score=36.87 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=36.1
Q ss_pred hhChhhHhhh----CC-CCCHHHHHHHhCcCCCCC-cCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAK----AG-ELSAPEIAAQLQAQNVKA-PMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~----~g-~~t~~~la~~~~~~~~~~-~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|.+ .| +.|..|||+.+|+ + ..-+.+.|+.|...|+|..
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 4445555542 23 6899999999999 7 7889999999999999996
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.64 E-value=10 Score=31.89 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=70.1
Q ss_pred CcceEEEEcCCcchHHHHHHh----hCCCCeEEEecc--hhHHHhCCCCCCcEEEecCCCCC-CC-------CC--cEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL--PHVVQDAPSYAGVEHVGGNMFES-VP-------EG--DAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~d~~~~-~~-------~~--D~i~ 260 (360)
++..|+++|.-.|.-+..++. .....+++++|+ ...-..|++.++|.|+.++-.++ +. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999888866554443 333456777765 22223344468999999987763 11 11 5556
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 301 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~ 301 (360)
+-..-|+. +.+.+.|+-....|.-|-++++-|....+.+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 66666653 4677888889999999999999998876654
|
|
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=83.42 E-value=2.3 Score=29.41 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|...|+.. ..|.++|-+.+|+ +..-+-..|.-|+..|++.+.
T Consensus 9 ~IL~~ls~~-c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 9 KILIILSKR-CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHhc-cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 355666764 8999999999999 888899999999999999974
|
|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=83.40 E-value=2.3 Score=35.23 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=33.2
Q ss_pred cEEEeccccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|+++++||+++- +...+++.+++.+|+|+..++.....+
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999864 456788888889998987777766544
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.6 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.8
Q ss_pred CC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+ |..+||+.+|+ ...-+++-|+.|.+.|+|+..
T Consensus 23 ~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 23 RLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp BE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred EeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 56 99999999999 889999999999999999974
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PRK10906 DNA-binding transcriptional repressor GlpR; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=1.3 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=41.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+.-|.+.|.+.|..++.|||+.+++ .+.=++|-|..|...|++.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 44567788888889999999999999 888999999999999999974
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.98 E-value=6.2 Score=34.40 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-----hhHHHhCCCCCCcEEEecCCCCCCC------CCcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-----PHVVQDAPSYAGVEHVGGNMFESVP------EGDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~------~~D~i~~~ 262 (360)
++++.+||-+|.++|.....+..-. |.--+..++. .+.+..|+++.+|-=+.-|+..|.. --|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 5788999999999999887776654 4433344433 3677778777777666667766432 1277765
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+-+ +++..-+.-++.--||+||.++|.-.
T Consensus 233 Dvaq---pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 233 DVAQ---PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred cCCC---chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 2222 33455566678889999999998654
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.98 E-value=1.5 Score=37.33 Aligned_cols=34 Identities=38% Similarity=0.505 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.|++|+|+++|+ ..--.+|.|.+|++.|++...
T Consensus 173 ~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 173 ELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred ccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 8999999999999 888899999999999999854
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.86 E-value=11 Score=34.45 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC-C-cEEEecC-----CCC----CCCC--CcEE
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-G-VEHVGGN-----MFE----SVPE--GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~-v~~~~~d-----~~~----~~~~--~D~i 259 (360)
.+.+.+||-+|+| .|..+...++.+...++++.|+ +.-++.|++.. . +...... +.+ -... .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5678999999999 5788888899998899999998 88888888741 1 1111111 101 0111 1888
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+-+..++ ..++.+..++++||.+++.....+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 7776554 457788899999999888875443
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=82.51 E-value=1.7 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=39.6
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..+++.+.... +.+..+|+..+|. |++.+-..++.|...|+|...
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 3455667777643 8899999999999 999999999999999999963
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.6 Score=36.43 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.|.....|||+++|+ .+..+...++-|+..|++.. ...++|..|..|..++.
T Consensus 23 qp~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~e~l~ 74 (260)
T COG1497 23 QPRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEK---EGRGEYEITKKGAEWLL 74 (260)
T ss_pred CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceee---cCCeeEEEehhHHHHHH
Confidence 368899999999999 88899999999999999997 35569999999976654
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=81.69 E-value=1.9 Score=38.03 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=52.8
Q ss_pred CcceEEEEcCCcchHHHH---HHhhC--CCCeEEEecc----hhHHH---------------------------hCCCC-
Q 018145 197 NVERLVDVGGGFGVTLSM---ITSKY--PQIKAVNFDL----PHVVQ---------------------------DAPSY- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 239 (360)
-+..|+|+||=.|..+.. +++.+ ++-++.++|. |+.-. ...+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 457999999998876644 34443 4556777774 22211 01111
Q ss_pred ---CCcEEEecCCCCCCCCC---cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 240 ---AGVEHVGGNMFESVPEG---DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 240 ---~~v~~~~~d~~~~~~~~---D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++|.++.|.|.+.+|.. .+.++.-=. ++= +.....|..++..|.|||.+++-|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlY-esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLY-ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec-cch-HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46899999987655532 222221111 111 2456789999999999999998664
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=2.1 Score=39.45 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=43.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc-eeecccCCCceeecchh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~-l~~~~~~~~~~y~~t~~ 108 (360)
...|.+.|....+.+.++||+++|+ ....+.+.++.|...|+ +.. ..+..|.+.+.
T Consensus 6 ~~~il~~L~~~~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~---~~~~Gy~L~~~ 62 (319)
T PRK11886 6 MLQLLSLLADGDFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFS---VKGKGYRLAEP 62 (319)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEE---ecCCeEEecCc
Confidence 3456777776558999999999999 89999999999999999 543 23346776443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=81.63 E-value=2.2 Score=38.52 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=67.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCC----CC--CCcEEEecCCCCC----CCC-CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAP----SY--AGVEHVGGNMFES----VPE-GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~d~~~~----~~~-~D~i~~ 261 (360)
..++.+|||+-++.|.=+..+++..+ ...++..|. +.-+...+ +. ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678999999999999999999987 467888887 44333322 21 4566666665442 122 277765
Q ss_pred ------ccccccCCh-------hH-------HHHHHHHHHHhC----CCCcEEEEEeeec
Q 018145 262 ------KWILHCWDD-------DH-------CLRILKNCYKAV----PGNGKVIVMNSIV 297 (360)
Q Consensus 262 ------~~vlh~~~~-------~~-------~~~~L~~i~~~L----kpgG~lli~e~~~ 297 (360)
..++..-++ ++ -.++|+++.+.+ ||||+++-..-..
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 222332222 11 236899999999 9999999877544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=81.61 E-value=6.8 Score=31.41 Aligned_cols=118 Identities=14% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCCCCCCcEEE
Q 018145 171 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAPSYAGVEHV 245 (360)
Q Consensus 171 ~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~ 245 (360)
..|-+.|..... ..++.+..+.+. ..-|||+|=|+|..=-.+.+.+|+-+++++|. |+.+. +.=.++
T Consensus 5 Dsfi~RmtaQR~-~L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-----~~~~~i 76 (160)
T PF12692_consen 5 DSFIRRMTAQRD-CLNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-----PEEDLI 76 (160)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG--------GGGEE
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-----chHhee
Confidence 344444443322 223444555433 36799999999999999999999999999995 22211 223577
Q ss_pred ecCCCCCCCC----C-cEEEe--ccccccCChhH---HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 246 GGNMFESVPE----G-DAILM--KWILHCWDDDH---CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 246 ~~d~~~~~~~----~-D~i~~--~~vlh~~~~~~---~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.||+.+..+. + .+.+. -.-.|+ .+++ ...+=.-+..+|.|||.++...+..
T Consensus 77 lGdi~~tl~~~~~~g~~a~laHaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 77 LGDIRETLPALARFGAGAALAHADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp ES-HHHHHHHHHHH-S-EEEEEE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred eccHHHHhHHHHhcCCceEEEEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 7776652221 1 22222 122222 1111 1122234556788999888766554
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=81.45 E-value=1.4 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=27.3
Q ss_pred CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcce
Q 018145 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 60 t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
|.+.||+.+|+ ..+-+.+.++.|+..|+|
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 888999999999999986
|
|
| >smart00531 TFIIE Transcription initiation factor IIE | Back alignment and domain information |
|---|
Probab=81.38 E-value=1.6 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=36.7
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCccee
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
-|+++|...|.+|-++||+.+|+ +..-++++|..|...+++.
T Consensus 5 ~v~d~L~~~~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 5 LVLDALMRNGCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred eehHHHHhcCCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 47888877789999999999999 8999999999999955554
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=5.2 Score=40.23 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=75.5
Q ss_pred ChhhhhccCccHHHHHHHHHhhcchhhHH------------HH------HhhcccC---CCcceEEEEcCCcchHHHHHH
Q 018145 158 HIFEYASGNPRFNETYHEAMFNHSTIAME------------RI------LEHYEGF---QNVERLVDVGGGFGVTLSMIT 216 (360)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~------------~i------~~~~~~~---~~~~~vLDiG~G~G~~~~~l~ 216 (360)
..|+.+++++-....|.+++......... ++ +++.+.. .....|+-+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 45888889998888888877554321110 00 1111211 122569999999998887766
Q ss_pred hhCC----CCeEEEecc-hhHHH---hCC-CC-----------CCcEEEecCCCC-CCC-------------CCcEEEec
Q 018145 217 SKYP----QIKAVNFDL-PHVVQ---DAP-SY-----------AGVEHVGGNMFE-SVP-------------EGDAILMK 262 (360)
Q Consensus 217 ~~~p----~~~~~~~D~-~~~~~---~a~-~~-----------~~v~~~~~d~~~-~~~-------------~~D~i~~~ 262 (360)
+... .++++.++. |..+. ..+ +. ++|+++..|+.+ ..+ ..|+|++-
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 6543 456677775 34221 111 11 248999999987 322 24888762
Q ss_pred cccccCC-hhHHHHHHHHHHHhCCC----CcE
Q 018145 263 WILHCWD-DDHCLRILKNCYKAVPG----NGK 289 (360)
Q Consensus 263 ~vlh~~~-~~~~~~~L~~i~~~Lkp----gG~ 289 (360)
. |--|. ++-..+.|..+.+.||+ +|.
T Consensus 800 L-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 800 L-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred h-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1 11122 22334567777777776 664
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=81.08 E-value=1.6 Score=33.53 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++|++|||+.+.+ .++.++.+|+.|...|.|+..
T Consensus 19 ~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 19 EVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred ceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 7899999999999 999999999999999999964
|
|
| >COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription] | Back alignment and domain information |
|---|
Probab=81.07 E-value=2 Score=35.56 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=39.5
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.-|++.|.+.|-+|=++||+.+|+ ...-++++|.+|...|++...
T Consensus 21 ~~v~~~l~~kge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEKGELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhcCCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 446788887567999999999999 888999999999999999953
|
|
| >PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication | Back alignment and domain information |
|---|
Probab=81.06 E-value=5 Score=33.05 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
-.|..+||+.+|+ ..+-+.|.+..|...++|.+ ...+.|.++|.
T Consensus 75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKK---IRNGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEE---ccCCeEEECcH
Confidence 4689999999999 88889999999999999997 45578888765
|
; GO: 0006260 DNA replication, 0006276 plasmid maintenance |
| >PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=80.95 E-value=0.93 Score=31.00 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=43.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.+-.|++.|...|+.++-.||...|++. +..-+.+.|..|...|.|.... ..+-.|+++.
T Consensus 5 ~ee~Il~~L~~~g~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~~-~~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELGGSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKEG-GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHTSSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEEC-SSSTEEEE-H
T ss_pred HHHHHHHHHHhcCCccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeCC-CCCCceEecc
Confidence 4566888888877777777777777611 3678999999999999998753 3566777664
|
5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A .... |
| >PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=1.7 Score=38.72 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=42.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.+..|.+.|.+.|.+++.|||+.+++ .+.-++|=|..|...|+|.+.
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45567888988889999999999999 888999999999999999974
|
|
| >PRK10411 DNA-binding transcriptional activator FucR; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=2.9 Score=36.74 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=40.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
...|.+.|.+.+..+.++||+.+|+ .+.-++|-|..|...|.+.+
T Consensus 6 ~~~Il~~l~~~~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 6 QQAIVDLLLNHTSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3447778877789999999999999 88999999999999999987
|
|
| >COG3413 Predicted DNA binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.11 E-value=1.9 Score=37.15 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHH
Q 018145 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRL 85 (360)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~ 85 (360)
..-.+|+.|.+.|-||. ++ ..|+.+||+.+|+ .+.-+...||.
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR--~~~l~dLA~~lGI----Skst~~ehLRr 201 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR--RVSLKDLAKELGI----SKSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence 45678999999999999 55 6999999999999 55555555553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 360 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-105 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-105 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-92 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 2e-72 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 3e-62 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 1e-35 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-33 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 3e-32 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 5e-27 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 5e-27 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 5e-27 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 3e-18 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-17 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 4e-16 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 6e-14 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 1e-13 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 7e-12 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 3e-09 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 6e-09 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 4e-05 | ||
| 3dp7_A | 363 | Crystal Structure Of Sam-Dependent Methyltransferas | 2e-04 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 428 bits (1102), Expect = e-151
Identities = 184/369 (49%), Positives = 251/369 (68%), Gaps = 12/369 (3%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA---- 56
MGS + + +EE+ AMQLA VLPMA +AAI+L V EI+AK+
Sbjct: 1 MGSTGNAE---IQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPS 57
Query: 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKY 111
G +S EIAAQL N +AP+MLDR+LRLL S+ V+ ++ ERLY L PV K+
Sbjct: 58 GYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKF 117
Query: 112 FVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNE 171
N+DG SL F+ L DKV +E W LKDA++EGGIPFN+ +GM+IF+Y + R N+
Sbjct: 118 LTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINK 177
Query: 172 TYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 231
+++ M ++STI M++ILE Y GF+ + +VDVGGG G SMI +KYP I A+NFDLPH
Sbjct: 178 VFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237
Query: 232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291
V+QDAP+++GVEH+GG+MF+ VP+GDAI +KWI H W D+HCL++LKNCY A+P +GKVI
Sbjct: 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVI 297
Query: 292 VMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC 351
V I+P P+ S A + D L++ + GG+ERT+KE+ LA+A+GF+G ASC
Sbjct: 298 VAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAF 357
Query: 352 NLYIMEFFK 360
N Y+MEF K
Sbjct: 358 NTYVMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 417 bits (1073), Expect = e-146
Identities = 162/358 (45%), Positives = 227/358 (63%), Gaps = 8/358 (2%)
Query: 11 AQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE--LSAPEIAAQL 68
+ +E++ A+QLA VLPM + AI+LG+ EI+ AG L+ E+AA+L
Sbjct: 7 STAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKL 66
Query: 69 QAQ-NVKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKDGASLG 122
+ N +AP M+DR+LRLL S+ V+ C V R Y PV K+ N+DG S+
Sbjct: 67 PSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMA 126
Query: 123 HFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182
+ DKV MESW LKDAV++GGIPFN+ +GM FEY +PRFN ++E M NHS
Sbjct: 127 ALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSI 186
Query: 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGV 242
I +++LE Y GF+ + LVDVGGG G T++ I + YP IK VNFDLPHV+ +AP + GV
Sbjct: 187 IITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246
Query: 243 EHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE 302
HVGG+MF+ VP GD ILMKWILH W D HC +LKNCY A+P +GKV+++ I+P PE
Sbjct: 247 THVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPE 306
Query: 303 VSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+ +++ +D++++ + GGRER ++E+ LA AGF G+ N + +EF K
Sbjct: 307 ANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 412 bits (1060), Expect = e-144
Identities = 149/373 (39%), Positives = 218/373 (58%), Gaps = 14/373 (3%)
Query: 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-- 58
MG+ ++ Q E+ E+ + AM L +V P AAI L +FEIIAKA
Sbjct: 1 MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPG 60
Query: 59 --LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVS 109
+S EIA++L A Q+ P LDRMLRLL S+ VL + G ER+Y L+ V
Sbjct: 61 AFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120
Query: 110 KYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPR 168
KY V ++ L F ++ W+ K+AV++ I F VHG+ +E+ + +
Sbjct: 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180
Query: 169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFD 228
N+ ++++M + M+R+LE Y GF+ + LVDVGGG G L +I SKYP IK +NFD
Sbjct: 181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFD 240
Query: 229 LPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNG 288
LP V+++AP +G+EHVGG+MF SVP+GDA+++K + H W D+ C+ L NC+KA+ NG
Sbjct: 241 LPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG 300
Query: 289 KVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348
KVI++ I+PE P S ++ S LD L+ GGRERT+K+Y +L+ +GF A
Sbjct: 301 KVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVAC 359
Query: 349 CVCNLY-IMEFFK 360
N +MEF+K
Sbjct: 360 RAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 387 bits (995), Expect = e-134
Identities = 96/349 (27%), Positives = 175/349 (50%), Gaps = 10/349 (2%)
Query: 16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
+ E ++ + + + M+ + A+++ + II G+ +S + + LQ + K
Sbjct: 8 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSK 67
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
+ R++R L + E ++ E YAL S+ V D L + LD
Sbjct: 68 IGN-VRRLMRYLAHNGFFEI-ITKEEESYALTVASELLVRGSDL-CLAPMVECVLDPTLS 124
Query: 135 ESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
S+ LK + E + F G +++ NP +N ++++AM + S + + +
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDF 184
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV 253
F +E +VDVGGG G T +I +P++K + FD P VV++ + +VGG+MF S+
Sbjct: 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSI 244
Query: 254 PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGN---GKVIVMNSIVPEIPEVSSAARET 310
P DA+L+K+ILH W D CLRILK C +AV + GKV +++ ++ + + + +
Sbjct: 245 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIK 304
Query: 311 SLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 359
L+DV + G+ER ++E+ +L I AGF+ + L ++E +
Sbjct: 305 LLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 379 bits (975), Expect = e-131
Identities = 88/349 (25%), Positives = 145/349 (41%), Gaps = 21/349 (6%)
Query: 14 KHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNV 73
+ + + +S + AMG A +AA +GV + + G + E+AA
Sbjct: 12 RAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV-DGPRTPAELAAATGTD-- 68
Query: 74 KAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVF 133
L R+LRLL V+ S + +AL S+ + + D +F
Sbjct: 69 --ADALRRVLRLLAVRDVVRES----DGRFALTDKGAALRSD-SPVPARAGILMFTDTMF 121
Query: 134 MESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
+ A+ F + G + Y G+ Y+E M S +
Sbjct: 122 WTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG- 180
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVV----QDAPSYAG-VEHVGGN 248
F + DVGGG G L + ++P ++ V D VV DAP AG + V G+
Sbjct: 181 DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240
Query: 249 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308
VP D ++K ILH W D+ +RIL NC + +P +G+V+V++++VPE + A
Sbjct: 241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND----AH 296
Query: 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIME 357
++ +D +++ G+ERT E L AAG + + I
Sbjct: 297 QSKEMDFMMLAA-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-129
Identities = 82/355 (23%), Positives = 156/355 (43%), Gaps = 24/355 (6%)
Query: 15 HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
+ + + G A A++LGV E++ + G +A +A A
Sbjct: 29 NPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGAH--- 84
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
L R+LRLL + V + G + L+A N +S + + + +
Sbjct: 85 -EQTLRRLLRLLATVGVFDDL--GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHW 140
Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
+W L +V G F+ +G ++ +P+ E ++ AM + S ++ Y
Sbjct: 141 RAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY-D 199
Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGG 247
F VD+GGG G ++ + +P ++ + P V ++A E + G
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 248 NMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 306
+ FE++P+G D L+K +LH WDDD +RIL+ A+ + +++V+++++ E P S+
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTL 319
Query: 307 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC-VCNLYIMEFFK 360
+D+LL+ GG ER++ E+ L +G + C + I+E +
Sbjct: 320 -----FVDLLLLVL-VGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-128
Identities = 99/359 (27%), Positives = 169/359 (47%), Gaps = 18/359 (5%)
Query: 16 EEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVK 74
EE E + H + V MA ++A++LG+ + I G+ ++ E+A+ L+ K
Sbjct: 2 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 61
Query: 75 APMMLDRMLRLLVSHRVLECSVS-------GGERLYALNPVSKYFVSNKDGASLGHFMAL 127
+ L R LRLL + ++ E Y+L P SK +S K L +
Sbjct: 62 VNI-LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKG 119
Query: 128 PLDKVFMESWLGLKDAVMEGG--IPFNRVHGMHIFEYASGNPRFN--ETYHEAMFNHSTI 183
L ++ W K E F G +++ + + + + +AM + S +
Sbjct: 120 ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRM 179
Query: 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVE 243
+ E+ F+ +E LVDVGGG G +I +P +K FD P VV + +
Sbjct: 180 FKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239
Query: 244 HVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEI 300
VGG+MF+S+P DA+L+KW+LH W+D+ L+ILKN +A+ +GKVI+++ + E
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299
Query: 301 PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 359
+ D++++T G+ERTK+E+ +L AGF ++E +
Sbjct: 300 SDDRGLTELQLDYDLVMLTM-FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-128
Identities = 79/359 (22%), Positives = 142/359 (39%), Gaps = 23/359 (6%)
Query: 15 HEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVK 74
E E ++ ++ +V PMA + A L + + + AG + +A +
Sbjct: 7 GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDT---- 61
Query: 75 APMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFM 134
P L R++R L VLE G R +
Sbjct: 62 HPQALSRLVRHLTVVGVLEGGEKQG-RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHAD 120
Query: 135 ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG 194
++ GL D V G + +G +E S + +++ M +A E + Y
Sbjct: 121 LAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY-D 179
Query: 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGG 247
+ V ++DVGGG G L+ I + P ++ +L + A V G
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239
Query: 248 NMFESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 306
+ F+ +P D +L+ ++L W D+ L IL+ C +A+ G+++V++ E
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 299
Query: 307 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF-----ASCVCNLYIMEFFK 360
++LLD+ ++T GGR RT+ E +LA +AG + + + I+EF
Sbjct: 300 F--STLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-125
Identities = 73/337 (21%), Positives = 134/337 (39%), Gaps = 21/337 (6%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
++ + + PM + A L + + I AG + +AA+ + P
Sbjct: 12 AARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL-AGARTVKALAARTDTR----P 66
Query: 77 MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
L R++R LV+ +LE + V + + A S
Sbjct: 67 EALLRLIRHLVAIGLLEED---APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADIS 123
Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
+ L DA+ G + ++G +E +G P ++ + +A + Y +
Sbjct: 124 FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWT 182
Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNM 249
NV ++DVGGG G + I + P + A ++ V A SY V+ V G+
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242
Query: 250 FESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308
FE +P DAI++ ++L W D +RIL C +A+ G++++ +
Sbjct: 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT 302
Query: 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345
LD+ ++ GG RT++++ LA +AG
Sbjct: 303 ---ELDLRMLVF-LGGALRTREKWDGLAASAGLVVEE 335
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-125
Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 26/345 (7%)
Query: 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDR 81
+ + ++ + PMA + A L V + IA AG +A EIA+ A LDR
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHIA-AGHRTAAEIASAAGAH----ADSLDR 57
Query: 82 MLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLK 141
+LR LV+ + G+ +Y L + + ++ L
Sbjct: 58 LLRHLVAVGLFTRD---GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELA 114
Query: 142 DAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201
++ G + +G +E +P + ++ M +H + I Y + + +
Sbjct: 115 HSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKY-DWAALGHV 173
Query: 202 VDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP 254
VDVGGG G LS + + + + DL A + V G+ F+ +P
Sbjct: 174 VDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP 233
Query: 255 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313
G ++ +LH WDD + IL+ C +A G V+V+ ++ + + +
Sbjct: 234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD-------EHAGTGM 286
Query: 314 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEF 358
D+ ++T GG+ER+ E ELA AG + + I+E
Sbjct: 287 DLRMLTY-FGGKERSLAELGELAAQAGLAVRAA-HPISYVSIVEM 329
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 355 bits (914), Expect = e-122
Identities = 82/351 (23%), Positives = 132/351 (37%), Gaps = 27/351 (7%)
Query: 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM 77
+ + +Q+ G A +LG+ ++I G S +AA + +
Sbjct: 2 NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGSD----AE 56
Query: 78 MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESW 137
+ R++RLLV+ + + YA P S + S M L + F +W
Sbjct: 57 RIHRLMRLLVAFEIFQGD---TRDGYANTPTSHLLRDVEG--SFRD-MVLFYGEEFHAAW 110
Query: 138 LGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN 197
+A++ G F G + Y P + AM S +A I + F+
Sbjct: 111 TPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG 168
Query: 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYA-------GVEHVGGNMF 250
VDVGGG G I P + V D + A V VGG+M
Sbjct: 169 -RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227
Query: 251 ESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE 309
+ VP D L+ I+ D+ LR+L NC +A+ G+G+V+V+ + S +
Sbjct: 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA----SEPSPM 283
Query: 310 TSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360
+ L DV L GR RT +E +L GF ++ +
Sbjct: 284 SVLWDVHLFMA-CAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = e-104
Identities = 62/339 (18%), Positives = 136/339 (40%), Gaps = 29/339 (8%)
Query: 17 EEEEEEESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKA 75
+ Y A +L G++ +AAI+L +F +A+ G +AA +
Sbjct: 23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----V 77
Query: 76 PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHF--MALPLDKVF 133
P L+ +L L RV+ + ++L + Y S H +A + +
Sbjct: 78 PPRLEMLLETLRQMRVINLE----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLA 133
Query: 134 MESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYE 193
+ ++GL AV + Y N + E +++ A++ +LE
Sbjct: 134 DDFYMGLSQAVRGQK------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEA- 186
Query: 194 GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVG 246
V++++DVGGG G + + +P++ + +LP + A + +
Sbjct: 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246
Query: 247 GNMF-ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 305
+++ ES PE DA+L IL+ ++ + K + A+ G++++++ ++ + +
Sbjct: 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF 306
Query: 306 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344
+L + + + Y E+ + G+K +
Sbjct: 307 DYLSHYILGAGMPF--SVLGFKEQARYKEILESLGYKDV 343
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 295 bits (756), Expect = 1e-98
Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 26/325 (8%)
Query: 29 MQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVS 88
A +AA++L VF I++ G S+ +A + Q + + LV
Sbjct: 11 FNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQTS----ERGMRMLCDYLVI 65
Query: 89 HRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGG 148
+ Y L S F+ + +G + L + + L AV++GG
Sbjct: 66 IGFMTKQ----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG 121
Query: 149 IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGF 208
+ + +F + M N + + + + E+ +++D+
Sbjct: 122 TAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE---PLKVLDISASH 176
Query: 209 GVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNMFESV--PEGDAI 259
G+ + P + D V++ A A + G+ FE + D +
Sbjct: 177 GLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLV 236
Query: 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT 319
L+ LH +D C ++L+ A+ GKVIV + I + + ++++
Sbjct: 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR---ITPPDAAAFSLVMLA 293
Query: 320 RDGGGRERTKKEYTELAIAAGFKGI 344
G T EY + AGF
Sbjct: 294 TTPNGDAYTFAEYESMFSNAGFSHS 318
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 1e-94
Identities = 57/350 (16%), Positives = 133/350 (38%), Gaps = 28/350 (8%)
Query: 10 LAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQL 68
++ + +E+ E+ A ++A G V+ ++ ++ G+F++++ E + EI+ +
Sbjct: 1 MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRT 60
Query: 69 QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALP 128
+L ++ + E Y L + +++K F
Sbjct: 61 GLT----RYAAQVLLEASLTIGTILLE----EDRYVLAKAGWFLLNDKMARVNMEF---- 108
Query: 129 LDKVFMESWLGLKDAVMEGGIPFNRVHGMH--IFEYASGNP-RFNETYHEAMFNHSTIAM 185
V + L++A++ G +V G I+E S P + +++ +S +
Sbjct: 109 NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF 168
Query: 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG---- 241
+ LE + +RL+D+GG G + +++ DLP ++
Sbjct: 169 GKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG 227
Query: 242 ---VEHVGGNMFE---SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294
+ G N+ + P G DA+ M L C+ ++ + IL +++ + KV +M
Sbjct: 228 SERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287
Query: 295 SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344
++ +++ T + +G + + AG +
Sbjct: 288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 4e-91
Identities = 44/339 (12%), Positives = 112/339 (33%), Gaps = 32/339 (9%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP 76
E++ S ++L+ A+ +F++ + E+AA
Sbjct: 17 EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG--RTPAEVAASFGMV----E 70
Query: 77 MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMES 136
+L L + +L + +++ +++ +G + + ++
Sbjct: 71 GKAAILLHALAALGLLTKE----GDAFRNTALTERYLTTTSADYIGPI--VEHQYLQWDN 124
Query: 137 WLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQ 196
W L + + + + + R + +++AM S ++ + E F
Sbjct: 125 WPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VFA 178
Query: 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG-------VEHVGGNM 249
++D+ GG G L+ + ++PQ+ +DLP A VE N+
Sbjct: 179 RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNL 238
Query: 250 FESVPEG----DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS 305
++ D +++ LH +D ++ + V G ++++ + +
Sbjct: 239 LDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT---MNDDRV 295
Query: 306 AARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344
++ + +M G + AG
Sbjct: 296 TPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-07
Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 26/182 (14%)
Query: 171 ETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL 229
N S ++R L +D G G G + ++ V+
Sbjct: 53 GHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT- 111
Query: 230 PHVVQDAPSYAG------VEHVGGNMFESVPEG---DAILMKWILHCWDDDHCLRILKNC 280
+ A +Y G + + + PE D I ++W++ D H L+ C
Sbjct: 112 EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 171
Query: 281 YKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 340
++ NG +++ +++ E + R + +AG
Sbjct: 172 KGSLRPNGIIVIKDNMAQEGVI---------------LDDVDSSVCRDLDVVRRIICSAG 216
Query: 341 FK 342
Sbjct: 217 LS 218
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-05
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 21/150 (14%)
Query: 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAG----VEHVGGNMFESVPE 255
R +D G G G + +K + + H++++A + + +M +
Sbjct: 96 RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLP 155
Query: 256 G---DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL 312
D I+++W D ++ K+C +A+ NG + +
Sbjct: 156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG------------- 202
Query: 313 LDVLLMTRDGGGRERTKKEYTELAIAAGFK 342
D L+ ++ R+ Y L +G +
Sbjct: 203 -DRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-- 240
+E++L H + ++++ G G G ++ P + + D+ P ++ A
Sbjct: 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83
Query: 241 -GVEHVG---GNMFE-SVPEG--DAILMKWILHCWDD-----DHCLRILKNCYKAVPGNG 288
G+++V N+F + D I + ++L ++LK PG G
Sbjct: 84 NGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLK------PG-G 136
Query: 289 KVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTELAIAAGFKGIN 345
+ V+ + + L+ + G ++ L +GF+ I
Sbjct: 137 TITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIR 194
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 18/177 (10%)
Query: 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYA 240
+ ++D+G G G+ + + KYP+ D+ +++ A
Sbjct: 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL 92
Query: 241 GVEHVGGNMFESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298
V+++ + + E D ++ +H +D+ + K Y + +G I + +
Sbjct: 93 KVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152
Query: 299 EIPEVSSAARETSLLDVLLM-----------TRDGGGRERTKKEYTELAIAAGFKGI 344
E + + + V R ++ + AGF+ +
Sbjct: 153 ETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDV 209
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.76 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.75 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.75 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.75 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.74 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.73 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.7 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.7 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.66 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.66 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.66 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.65 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.65 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.65 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.64 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.62 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.61 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.59 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.58 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.58 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.56 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.55 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.55 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.54 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.53 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.52 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.52 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.5 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.48 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.47 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.43 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.41 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.4 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.4 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.4 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.39 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.37 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.36 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.36 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.36 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.36 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.34 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.34 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.32 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.32 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.32 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.31 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.31 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.31 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.31 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.3 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.3 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.29 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.29 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.28 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.28 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.28 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.25 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.25 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.25 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.24 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.24 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.23 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.23 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.23 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.22 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.22 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.22 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.22 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.21 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.2 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.2 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.2 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.19 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.19 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.18 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.18 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.18 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.17 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.17 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.17 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.17 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.16 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.16 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.15 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.15 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.15 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.15 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.14 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.12 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.1 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.09 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.09 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.08 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.08 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.06 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.06 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.05 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.04 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.03 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.02 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.02 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.02 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.02 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.02 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.01 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.01 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.01 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.01 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.01 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.99 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.98 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.98 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.98 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.97 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.97 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.97 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.96 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.94 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.92 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.92 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.89 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.89 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.89 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.85 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.83 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.82 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.81 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.81 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.8 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.79 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.78 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.78 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.78 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.74 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.73 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.69 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.68 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.68 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.65 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.56 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.5 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.48 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.48 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.47 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.46 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.46 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.46 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.45 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.43 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.43 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.42 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.4 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.39 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.39 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.38 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.37 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.35 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.34 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.32 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.29 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.28 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.28 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.27 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.26 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.21 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.15 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.12 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.12 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.98 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.94 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.93 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.92 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.88 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.84 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.83 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.8 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.77 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.77 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.72 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.66 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.64 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.59 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.59 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.56 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.53 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.49 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.48 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.43 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.4 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.37 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.32 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.17 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.13 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.1 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.07 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.96 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.96 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.86 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.86 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.83 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.79 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.75 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.75 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.63 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.62 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 96.55 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.53 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.52 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.43 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 96.31 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.3 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 96.27 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 96.25 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.23 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 96.21 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 96.2 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.2 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.18 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 96.17 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 96.16 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 96.16 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 96.13 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 96.12 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 96.11 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 96.1 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 96.02 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 96.01 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.0 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.99 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 95.99 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.97 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.95 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.94 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.93 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 95.9 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.89 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 95.86 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 95.84 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 95.83 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.77 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.77 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 95.75 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.72 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 95.71 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.69 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 95.69 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.68 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 95.67 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.67 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 95.66 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 95.66 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.64 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.59 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.58 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.58 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.56 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 95.56 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 95.54 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.54 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.51 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 95.5 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 95.46 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 95.44 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 95.43 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 95.41 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.4 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 95.4 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 95.37 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.36 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 95.33 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 95.31 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 95.3 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.27 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 95.26 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 95.25 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 95.24 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 95.24 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 95.18 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 95.18 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.16 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 95.12 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 95.07 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 95.04 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 95.01 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.99 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.98 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 94.94 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.94 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.94 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 94.92 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.82 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.76 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 94.76 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.7 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 94.61 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 94.55 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.41 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 94.38 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 94.23 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 94.22 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 94.13 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 94.12 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.72 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 93.69 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 93.61 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 93.5 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 93.49 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 93.48 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 93.37 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 93.27 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 93.21 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 93.2 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 93.2 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 93.18 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 93.17 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 93.09 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 92.99 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 92.9 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 92.75 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 92.58 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 92.55 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 92.47 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 92.43 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 92.27 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 92.18 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 92.17 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 92.11 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 92.07 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 92.0 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 91.98 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 91.29 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 91.26 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 91.08 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 90.79 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 90.66 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.6 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 90.21 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 90.07 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 89.99 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 89.92 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 89.81 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 89.78 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 89.62 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 89.26 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 89.07 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 88.91 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.9 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 88.85 | |
| 3eyi_A | 72 | Z-DNA-binding protein 1; alternative splicing, DNA | 88.73 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 88.7 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 88.58 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 88.57 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 88.32 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 88.2 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 88.05 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 87.94 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 87.5 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 87.46 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.4 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 87.13 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 86.89 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 86.81 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 86.79 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 86.69 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 86.67 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 86.38 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 86.34 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 86.17 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 86.14 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 86.11 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 85.88 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 85.24 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 84.98 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 84.5 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 84.44 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 84.29 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 83.89 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 83.69 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 83.47 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 83.28 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 83.25 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 83.17 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 83.14 | |
| 3ri2_A | 123 | Transcriptional regulator, PADR-like family; PSI-b | 83.07 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 83.06 | |
| 3cuq_B | 218 | Vacuolar protein-sorting-associated protein 36; ES | 82.51 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 82.48 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 82.28 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 82.25 | |
| 4esb_A | 115 | Transcriptional regulator, PADR family; DNA bindin | 82.14 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 82.01 | |
| 2p5k_A | 64 | Arginine repressor; DNA-binding domain, winged hel | 81.78 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 81.69 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 81.62 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-55 Score=407.02 Aligned_cols=330 Identities=25% Similarity=0.411 Sum_probs=293.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
+.+.+..|++++.||+.+++|++|++|||||.|.+. ||+|+++||+++|+ +++.++|||++|++.|++.+.....
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~~ 80 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRGG 80 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccCc
Confidence 347788899999999999999999999999999874 58999999999999 9999999999999999998643234
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccC---CChhhhhccCccHHHHHHHH
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG---MHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+.|++|+.++.++.+.++.++++++.+. .+..+..|.+|.++++++.+++...+| .++|+++.++++....|+++
T Consensus 81 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~a 159 (353)
T 4a6d_A 81 KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQA 159 (353)
T ss_dssp EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHH
T ss_pred cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHH
Confidence 56899999999888887777888888764 456788999999999999988888777 46899999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC------CCCcEEEecCCC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS------YAGVEHVGGNMF 250 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~~~~~d~~ 250 (360)
|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|++
T Consensus 160 M~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~ 238 (353)
T 4a6d_A 160 LQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFF 238 (353)
T ss_dssp HHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred HHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccc
Confidence 99988888888999888 88889999999999999999999999999999999999987754 278999999999
Q ss_pred C-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCH
Q 018145 251 E-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 329 (360)
Q Consensus 251 ~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 329 (360)
+ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+++.|+... +|++||.
T Consensus 239 ~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ert~ 314 (353)
T 4a6d_A 239 KDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQERTP 314 (353)
T ss_dssp TSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCCCCCH
T ss_pred cCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCcCCCH
Confidence 8 56666999999999999999999999999999999999999999987654433 23456788888765 8999999
Q ss_pred HHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 330 KEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+||+++|+++||+.+++.+.++..++|+++|
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999998999999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-54 Score=403.57 Aligned_cols=344 Identities=47% Similarity=0.866 Sum_probs=301.0
Q ss_pred hhHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC--CCCCHHHHHHHhCc-CCCCCcCcHHHHHHHHhcCccee
Q 018145 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA--GELSAPEIAAQLQA-QNVKAPMMLDRMLRLLVSHRVLE 93 (360)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~--g~~t~~~la~~~~~-~~~~~~~~~~~~L~~L~~~g~l~ 93 (360)
...++.+.+..+++++.+++.+++|++|++|||||.|.+. +|+|++|||+++|+ ++|.++..++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 4455778889999999999999999999999999999984 59999999999995 32222338999999999999999
Q ss_pred eccc--CC---CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCcc
Q 018145 94 CSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR 168 (360)
Q Consensus 94 ~~~~--~~---~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~ 168 (360)
+... .+ ++.|++|+.++.|+.+.++.+++.++.+...+.++..|.+|.+++++|.++|+..+|.++|+++..+++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~ 172 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPR 172 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHH
Confidence 7411 01 478999999999888776678888887766788899999999999999899998999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecC
Q 018145 169 FNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN 248 (360)
Q Consensus 169 ~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d 248 (360)
..+.|++.|..........+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.+|
T Consensus 173 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 173 FNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 99999999998888777888888875677899999999999999999999999999999999999999988999999999
Q ss_pred CCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 249 MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 249 ~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
+++++|.+|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.+...........+++.|+....+++.||
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt 332 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERY 332 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCB
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCC
Confidence 99877767999999999999999999999999999999999999999987654333222334567887775445899999
Q ss_pred HHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 329 KKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|.++|+++||+.+++.+..+..++||++|
T Consensus 333 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 333 EREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999999999998
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=403.74 Aligned_cols=357 Identities=51% Similarity=0.902 Sum_probs=300.1
Q ss_pred CCchhHHHHhhccCCchhHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-C---CCCHHHHHHHhCcCCCCCc
Q 018145 1 MGSLSEYQKLAQKKHEEEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-G---ELSAPEIAAQLQAQNVKAP 76 (360)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g---~~t~~~la~~~~~~~~~~~ 76 (360)
|+|+++-+...+. ...++.+.+..+++++.+++.+++|++|++|||||.|.+. | |.|++|||+++|..+|.++
T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~ 77 (368)
T 3reo_A 1 MGSTGNAEIQIIP---THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAP 77 (368)
T ss_dssp -------------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHH
T ss_pred CCCcccccccccC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcch
Confidence 7888877543122 4457788999999999999999999999999999999983 3 6999999999984233233
Q ss_pred CcHHHHHHHHhcCcceeeccc--CC---CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcc
Q 018145 77 MMLDRMLRLLVSHRVLECSVS--GG---ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPF 151 (360)
Q Consensus 77 ~~~~~~L~~L~~~g~l~~~~~--~~---~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 151 (360)
+.++||||+|++.|+|++... .+ ++.|++|+.++.|+.+.++.+++.++.+...+.++..|.+|.+++++|.++|
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~ 157 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPF 157 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHH
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHH
Confidence 499999999999999997410 01 3689999999999888766788888877667888999999999999998999
Q ss_pred hhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchh
Q 018145 152 NRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPH 231 (360)
Q Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~ 231 (360)
+..+|.++|+++..+++..+.|++.|..........+++.++++++..+|||||||+|.++..+++.+|+++++++|+|.
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 237 (368)
T 3reo_A 158 NKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237 (368)
T ss_dssp HHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHH
Confidence 99999999999999999999999999988887778888888756778999999999999999999999999999999999
Q ss_pred HHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh
Q 018145 232 VVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS 311 (360)
Q Consensus 232 ~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~ 311 (360)
+++.+++.++|+++.+|+++++|.+|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.+..........
T Consensus 238 ~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 317 (368)
T 3reo_A 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317 (368)
T ss_dssp HHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHH
T ss_pred HHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHH
Confidence 99999988999999999998777679999999999999999999999999999999999999998876544333333445
Q ss_pred hhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 312 LLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 312 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.+++.|+....+++.|+.++|.++|+++||+.+++.+..+..++||++|
T Consensus 318 ~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 6787777543488999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-49 Score=365.31 Aligned_cols=323 Identities=25% Similarity=0.354 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~ 101 (360)
.+....+++++.+++.++++++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ +++
T Consensus 20 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~----~~~ 90 (348)
T 3lst_A 20 LQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRE----SDG 90 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEe----cCC
Confidence 4677789999999999999999999999999987 69999999999999 99999999999999999996 568
Q ss_pred eeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcc
Q 018145 102 LYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS 181 (360)
Q Consensus 102 ~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 181 (360)
.|++|+.++.+..+. +.++++++.+...+..+..|.+|.+++++|.+++...+|.++|+++.++++....|.+.|....
T Consensus 91 ~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~ 169 (348)
T 3lst_A 91 RFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVS 169 (348)
T ss_dssp EEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhh
Confidence 999999999886544 3467888776556667899999999999999999988998899999999999999999999888
Q ss_pred hhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-----CCCcEEEecCCCCCCCCC
Q 018145 182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-----YAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~~~~~~ 256 (360)
......+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.++..++. .++|+++.+|+++++|..
T Consensus 170 ~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~ 248 (348)
T 3lst_A 170 AAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHA 248 (348)
T ss_dssp HTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCC
T ss_pred hhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCC
Confidence 887888888887 88889999999999999999999999999999999877773321 157999999999877745
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.... .....+++.|+.. .+++.++.++|.++|
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~t~~e~~~ll 323 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQERTAAELEPLF 323 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCCBHHHHHHHH
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988764222 1234567777665 488999999999999
Q ss_pred HHcCCceeeEEecCCceeEEEEeC
Q 018145 337 IAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 337 ~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++||+++++.+..+..++||++|
T Consensus 324 ~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 324 TAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999778899999975
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-49 Score=367.67 Aligned_cols=327 Identities=24% Similarity=0.442 Sum_probs=288.5
Q ss_pred hHHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc
Q 018145 18 EEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (360)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~ 97 (360)
-..+.....++++++.+++.++++++|+++||||.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~--- 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD--- 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE---
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE---
Confidence 33445777889999999999999999999999999996 69999999999999 99999999999999999997
Q ss_pred CCCce-eecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHH
Q 018145 98 GGERL-YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 98 ~~~~~-y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+++. |++|+.++.+..+ ++.++.+++.+...+..+..|.++.++++++.++|...+|.++|+++.++++....|...
T Consensus 104 ~~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (369)
T 3gwz_A 104 LGHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRA 182 (369)
T ss_dssp CSSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred eCCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHH
Confidence 45678 9999999987544 345788888776566678899999999999999999889988999999999999999999
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNM 249 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~ 249 (360)
|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ .++|+++.+|+
T Consensus 183 m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~ 261 (369)
T 3gwz_A 183 MGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDF 261 (369)
T ss_dssp HHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC
Confidence 99888877788888887 77889999999999999999999999999999999888888764 26899999999
Q ss_pred CCCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCC
Q 018145 250 FESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERT 328 (360)
Q Consensus 250 ~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 328 (360)
++++|.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++.... . ...+++.|+... +++.|+
T Consensus 262 ~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~g~~~t 335 (369)
T 3gwz_A 262 FETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-GGAERS 335 (369)
T ss_dssp TTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-SCCCBC
T ss_pred CCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-CCccCC
Confidence 9877754 99999999999999999999999999999999999999988764221 1 346677777654 899999
Q ss_pred HHHHHHHHHHcCCceeeEEe-cCCceeEEEEeC
Q 018145 329 KKEYTELAIAAGFKGINFAS-CVCNLYIMEFFK 360 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~k 360 (360)
.++|.++|+++||+++++.+ ..+..++||++|
T Consensus 336 ~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 336 ESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999999999999999999 578899999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=363.88 Aligned_cols=341 Identities=42% Similarity=0.741 Sum_probs=274.6
Q ss_pred HHhHHHHHHHH--HHHhhhHHHHHHHHHHhhChhhHhhhCC-C---CCHHHHHHHhCc--CCCCCcCcHHHHHHHHhcCc
Q 018145 19 EEEEESYSHAM--QLAMGVVLPMATQAAIQLGVFEIIAKAG-E---LSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHR 90 (360)
Q Consensus 19 ~~~~~~~~~~~--~~~~~~~~~~~l~~a~~lglfd~L~~~g-~---~t~~~la~~~~~--~~~~~~~~~~~~L~~L~~~g 90 (360)
++..+....++ +++.+++.+++|++|+++|||+.|.+.| | .|++|||+++|+ ++|.+++.++|||++|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34446667777 9999999999999999999999999855 6 999999999998 23446789999999999999
Q ss_pred ceeecc---cCC--CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcC-CCcchhccCCChhhhhc
Q 018145 91 VLECSV---SGG--ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG-GIPFNRVHGMHIFEYAS 164 (360)
Q Consensus 91 ~l~~~~---~~~--~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~~~ 164 (360)
+|++.. ..+ ++.|++|+.++.++.+.+..++++++.+...+.++..|.+|.++++++ .++|+..+|.++|+++.
T Consensus 97 ll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~ 176 (372)
T 1fp1_D 97 VLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMG 176 (372)
T ss_dssp SEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCS
T ss_pred ceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHH
Confidence 999741 001 369999999997765543246788887766677888999999999998 88898888989999999
Q ss_pred cCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEE
Q 018145 165 GNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 244 (360)
Q Consensus 165 ~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 244 (360)
.+++....|++.|..........+++.++.+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++|++
T Consensus 177 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~ 256 (372)
T 1fp1_D 177 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred hCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEE
Confidence 99999999999998887777778888886567789999999999999999999999999999999999999988888999
Q ss_pred EecCCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 245 VGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 245 ~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
+.+|+++++|..|+|+++++||+|+++++.++|++++++|||||+|+|.|...+.....+........+++.|+... ++
T Consensus 257 ~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 335 (372)
T 1fp1_D 257 VGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GG 335 (372)
T ss_dssp EECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SC
T ss_pred EeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CC
Confidence 99999987776799999999999999988999999999999999999999988764332211113445676666543 78
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
+.|+.++|.++|+++||+++++.+...+ .+|||++|
T Consensus 336 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 336 RERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp CCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 8899999999999999999999984433 59999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-49 Score=363.03 Aligned_cols=315 Identities=24% Similarity=0.377 Sum_probs=276.6
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 27 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.+++++.+++.++++++|+++||||.|.+ ||.|+++||+++|+ +++.++|||++|++.|++.+ .+++.|.+|
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~---~~~~~y~~t 79 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAA-GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTR---DGQGVYGLT 79 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEEC
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEe---cCCCeEEcC
Confidence 46889999999999999999999999987 69999999999999 99999999999999999997 467899999
Q ss_pred hhchhhhcCCCCCChHHHhhccCChhHH-HhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhH
Q 018145 107 PVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185 (360)
Q Consensus 107 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 185 (360)
+.++.+..+. +.++.+++.+...+..+ ..|.++.++++++.++|...+|.++|+++.++++....|...|........
T Consensus 80 ~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 158 (332)
T 3i53_A 80 EFGEQLRDDH-AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158 (332)
T ss_dssp TTGGGGSTTC-TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhcCC-chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhH
Confidence 9999986544 45788888776444456 789999999999999998888988999999999999999999988777666
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCCC-Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE-GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~D 257 (360)
..+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++++|. .|
T Consensus 159 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D 237 (332)
T 3i53_A 159 TGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAG 237 (332)
T ss_dssp TTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCS
T ss_pred HHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCc
Confidence 67777776 677899999999999999999999999999999999898887642 6899999999987774 49
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++. .+ ...+++.|+... +++.|+.++|.++|+
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e~~~ll~ 309 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAELGELAA 309 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHHHHHHHH
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHHHHHHHH
Confidence 9999999999999989999999999999999999999987654 11 235677776654 889999999999999
Q ss_pred HcCCceeeEEecCCceeEEEEeC
Q 018145 338 AAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 338 ~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++||+++++.+.++ .++||++|
T Consensus 310 ~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 310 QAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HTTEEEEEEEECSS-SEEEEEEE
T ss_pred HCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999888 99999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=361.98 Aligned_cols=336 Identities=28% Similarity=0.482 Sum_probs=286.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc--
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-- 97 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-- 97 (360)
..+....+++++.+++.+++|++|+++|||+.|.+. ||.|++|||+++|+ +|.+++.++|||++|++.|+|.+...
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~ 85 (358)
T 1zg3_A 7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKG 85 (358)
T ss_dssp CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccc
Confidence 335556788999999999999999999999999974 49999999999999 45457899999999999999997300
Q ss_pred CC-----CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcC--CCcchhccCCChhhhhccCccHH
Q 018145 98 GG-----ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEG--GIPFNRVHGMHIFEYASGNPRFN 170 (360)
Q Consensus 98 ~~-----~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~~~~~~~ 170 (360)
.+ ++.|++|+.++.++.+.+ .++++++.+...+.++..|.+|.++++++ .++|+..+|.++|+++..+|+..
T Consensus 86 ~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~ 164 (358)
T 1zg3_A 86 KEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESS 164 (358)
T ss_dssp SSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHH
T ss_pred cccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhh
Confidence 02 479999999997775543 57888887766677889999999999998 67888888889999999999999
Q ss_pred H--HHHHHHhhcchhhHHHHHhhcc-cCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEec
Q 018145 171 E--TYHEAMFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGG 247 (360)
Q Consensus 171 ~--~~~~~m~~~~~~~~~~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 247 (360)
. .|+..|........ .+++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++|+++.+
T Consensus 165 ~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 243 (358)
T 1zg3_A 165 TLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243 (358)
T ss_dssp HHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEEC
T ss_pred hHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeC
Confidence 9 99999988776665 7777773 256778999999999999999999999999999999999999988778999999
Q ss_pred CCCCCCCCCcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 248 NMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 248 d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
|+++++|..|+|+++++||+|+++++.++|++++++||| ||+|+|.|...++....+........+++.|+... ++
T Consensus 244 d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g 322 (358)
T 1zg3_A 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF-LG 322 (358)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH-SC
T ss_pred ccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC-CC
Confidence 999877767999999999999999899999999999999 99999999988764332111233456777776644 78
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+.|+.++|.++|+++||+.+++.+.++..++||++|
T Consensus 323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 899999999999999999999999888889999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-48 Score=359.74 Aligned_cols=336 Identities=28% Similarity=0.492 Sum_probs=287.2
Q ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc
Q 018145 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (360)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~ 97 (360)
++..+....+++++.+++.+++|++++++|||+.|.+. ||.|+++||+++|+ +|.+++.++|||++|++.|+|++..
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~- 88 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT- 88 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec-
Confidence 44566778899999999999999999999999999874 49999999999999 4444779999999999999999731
Q ss_pred CCCceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHh-cCCCcchhccCCChhhhhccCccHHHHHHHH
Q 018145 98 GGERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVM-EGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176 (360)
Q Consensus 98 ~~~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (360)
.+++.|++|+.++.++.+.+ .++++++.+...+.++..|.+|.++++ +|.++|...+|.++|+++.++++....|.+.
T Consensus 89 ~~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 167 (352)
T 1fp2_A 89 KEEESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDA 167 (352)
T ss_dssp SSSEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred CCCCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHH
Confidence 03689999999997775543 578888877656778889999999999 8888898888989999999999999999999
Q ss_pred HhhcchhhHHHHHhhcc-cCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCC
Q 018145 177 MFNHSTIAMERILEHYE-GFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPE 255 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~ 255 (360)
|.......... ++.++ .+++..+|||||||+|.++..+++.+|+++++++|+|.+++.+++.++++++.+|+++++|.
T Consensus 168 m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 246 (352)
T 1fp2_A 168 MASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPN 246 (352)
T ss_dssp HHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCC
T ss_pred HHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCC
Confidence 99887766566 67672 26778999999999999999999999999999999999999998877899999999887776
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCC---CcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPG---NGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~Lkp---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
.|+|++++++|+|+++++.++|++++++||| ||+|+|.|...++....+........+++.|+. . +++.|+.++|
T Consensus 247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~ 324 (352)
T 1fp2_A 247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEW 324 (352)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHH
T ss_pred ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHH
Confidence 7999999999999999888999999999999 999999999886543221111233456666665 3 5888999999
Q ss_pred HHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|+++||+.+++.+.++..++||++|
T Consensus 325 ~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 325 KKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999878889999986
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=352.93 Aligned_cols=319 Identities=25% Similarity=0.379 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
.+...+++++.+++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++.+ .+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~---~~~~~ 78 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG---DTRDG 78 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---ETTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe---cCCCe
Confidence 466789999999999999999999999999987 69999999999999 99999999999999999997 35689
Q ss_pred eecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcch
Q 018145 103 YALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHST 182 (360)
Q Consensus 103 y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~ 182 (360)
|++|+.++.+. + ++.++++++.+...+.+ ..|.+|.++++++.++|+..+|.++|+++.++++....|++.| ....
T Consensus 79 y~~t~~s~~l~-~-~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~ 154 (334)
T 2ip2_A 79 YANTPTSHLLR-D-VEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASN 154 (334)
T ss_dssp EEECHHHHTTS-S-STTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGH
T ss_pred EecCHHHHHHh-C-CCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHH
Confidence 99999998777 3 33467888877655544 8899999999999999988889899999999999999999999 8777
Q ss_pred hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCCC
Q 018145 183 IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPE 255 (360)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~~ 255 (360)
.....+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++++|.
T Consensus 155 ~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 232 (334)
T 2ip2_A 155 LAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS 232 (334)
T ss_dssp HHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCS
T ss_pred HHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCC
Confidence 77788888887 677 99999999999999999999999999999998888877652 5799999999987776
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
. |+|++.+++|+|+++++.++|++++++|||||+|++.|...++... + .....+++.|+... +++.|+.++|.+
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~---~~~~~~~~~~~~~~-~~~~~t~~e~~~ 307 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP-S---PMSVLWDVHLFMAC-AGRHRTTEEVVD 307 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC-C---HHHHHHHHHHHHHH-SCCCCBHHHHHH
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-c---chhHHhhhHhHhhC-CCcCCCHHHHHH
Confidence 5 9999999999999999999999999999999999999998765322 1 23345677676554 788999999999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEeC
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++++||+++++.+.++..++|+++|
T Consensus 308 ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 308 LLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999888899999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=341.57 Aligned_cols=323 Identities=18% Similarity=0.259 Sum_probs=260.1
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
..+....+++++.+++.++++++++++||||.|.+ +||.|++|||+++|+ +++.++|||++|++.|+|++ +
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~----~ 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL----E 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----E
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe----c
Confidence 34677889999999999999999999999999998 469999999999999 99999999999999999986 4
Q ss_pred CceeecchhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccC--CChhhhhccCccHHH----HH
Q 018145 100 ERLYALNPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHG--MHIFEYASGNPRFNE----TY 173 (360)
Q Consensus 100 ~~~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~----~~ 173 (360)
+++|++|+.++.++.+.+ ...++.+ ..+..+..|.+|.++++++.+++...+| .++|+++.++++... .|
T Consensus 84 ~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f 159 (363)
T 3dp7_A 84 EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGF 159 (363)
T ss_dssp TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHH
T ss_pred CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHH
Confidence 789999999987776543 1222322 2356788999999999999888877788 689999999988665 36
Q ss_pred HHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEe
Q 018145 174 HEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 246 (360)
Q Consensus 174 ~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 246 (360)
+..|..... ..++..+. ..+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++. ++|+++.
T Consensus 160 ~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 235 (363)
T 3dp7_A 160 DHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHG 235 (363)
T ss_dssp HHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred HHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence 666654332 23444443 356789999999999999999999999999999999888877642 4799999
Q ss_pred cCCCCC---CCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-hhhhhhhhhHHHhhhc
Q 018145 247 GNMFES---VPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-AARETSLLDVLLMTRD 321 (360)
Q Consensus 247 ~d~~~~---~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (360)
+|++++ +|.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.+....... ........++.++. .
T Consensus 236 ~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 314 (363)
T 3dp7_A 236 ANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA-N 314 (363)
T ss_dssp CCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS-C
T ss_pred ccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh-C
Confidence 999984 6644 9999999999999999999999999999999999999988866422110 00111222333332 2
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
.+++.|+.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus 315 ~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 315 GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 36788999999999999999999998765 4588999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=339.29 Aligned_cols=325 Identities=23% Similarity=0.381 Sum_probs=276.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.+..+..+++++.+++.++++++++++|||+.|.. ||.|++|||+++|+ +++.++|||++|++.|++++ ..+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~---~~~ 84 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEG---GEK 84 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---CCC
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEE---eCC
Confidence 45567789999999999999999999999999965 69999999999999 99999999999999999997 355
Q ss_pred c--eeecchhchhhhcCCCCCChHHHhhccCChhHH-HhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHH
Q 018145 101 R--LYALNPVSKYFVSNKDGASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAM 177 (360)
Q Consensus 101 ~--~y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 177 (360)
+ .|.+|+.++.+..+. +.+++.++.+...+..+ ..|.++.+.++++.+++...+|.++|+++..+++....|.+.|
T Consensus 85 ~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 163 (374)
T 1qzz_A 85 QGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALM 163 (374)
T ss_dssp -CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTC
T ss_pred CCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHH
Confidence 6 899999998776554 35788888776444566 8899999999999888888889899999999999999999999
Q ss_pred hhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCC
Q 018145 178 FNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMF 250 (360)
Q Consensus 178 ~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~ 250 (360)
..........+++.++ ++++.+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++|+++.+|++
T Consensus 164 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 242 (374)
T 1qzz_A 164 SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF 242 (374)
T ss_dssp GGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 8777766778888877 777899999999999999999999999999999998888877642 47999999998
Q ss_pred CCCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee--ecCCCCCCchhhhhhhhhhHHHhhhcCCCccC
Q 018145 251 ESVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS--IVPEIPEVSSAARETSLLDVLLMTRDGGGRER 327 (360)
Q Consensus 251 ~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (360)
+++|.. |+|++++++|+|+++++.++|++++++|||||+++|.|. +.++... ......+++.++... ++..+
T Consensus 243 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~ 317 (374)
T 1qzz_A 243 KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTFM-GGRVR 317 (374)
T ss_dssp SCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-SCCCC
T ss_pred CcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHhC-CCcCC
Confidence 877765 999999999999998888999999999999999999998 7654311 123345666666554 78899
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCce-----eEEEEeC
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNL-----YIMEFFK 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k 360 (360)
+.++|.++|+++||+++++.+.++.. ++|+++|
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99999999999999999999888776 8999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=333.08 Aligned_cols=323 Identities=23% Similarity=0.382 Sum_probs=277.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
.....+++++.+++.+++|.++.++|||+.|.. ||.|+++||+++|+ +++.++|+|++|++.|+|.+ ..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~---~~~g~ 89 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGE 89 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTE
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEe---cCCCe
Confidence 446778999999999999999999999999975 69999999999999 99999999999999999997 35679
Q ss_pred eecchhchhhhcCCCCCChHHHhhccCChh-HHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcc
Q 018145 103 YALNPVSKYFVSNKDGASLGHFMALPLDKV-FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHS 181 (360)
Q Consensus 103 y~~t~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 181 (360)
|++|+.++.+..+. +.+++.++.+...+. .+..|.++.+.++++.+++...+|.++|+++..+++....|...|....
T Consensus 90 y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~ 168 (360)
T 1tw3_A 90 FVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQ 168 (360)
T ss_dssp EEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTT
T ss_pred EEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999988776554 457888887754333 5778999999999998888888888999999999999999999998877
Q ss_pred hhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCC
Q 018145 182 TIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVP 254 (360)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~ 254 (360)
......+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.++++ ++++++.+|+++++|
T Consensus 169 ~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 247 (360)
T 1tw3_A 169 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP 247 (360)
T ss_dssp TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC
Confidence 777778888887 777899999999999999999999999999999998888877542 489999999998777
Q ss_pred CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee-cCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 255 EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI-VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
.. |+|++.+++|+|+++++.++|++++++|||||++++.|.. .++.... .....+++.++... ++..++.++|
T Consensus 248 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~ 322 (360)
T 1tw3_A 248 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKW 322 (360)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHH
T ss_pred CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHH
Confidence 65 9999999999999988899999999999999999999988 5543211 12335566665544 7889999999
Q ss_pred HHHHHHcCCceeeEEecCCc-----eeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCN-----LYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~-----~~vi~~~k 360 (360)
.++|+++||+++++.+.++. .++|+++|
T Consensus 323 ~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 323 DGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999887765 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=327.05 Aligned_cols=315 Identities=19% Similarity=0.235 Sum_probs=270.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
..+++++.+++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ +++.|++
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~----~~~~y~~ 78 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ-GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTK----QAEGYRL 78 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc-CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEe----cCCEEec
Confidence 568899999999999999999999999997 69999999999999 99999999999999999985 5689999
Q ss_pred chhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhH
Q 018145 106 NPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAM 185 (360)
Q Consensus 106 t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 185 (360)
|+.++.++...++.++++++.+...+..+..|.+|.++++++.+++. + |+++..+++....|.+.|........
T Consensus 79 t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
T 2r3s_A 79 TSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPA 152 (335)
T ss_dssp CHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHH
T ss_pred CHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhH
Confidence 99996555555455788888776555788899999999999876654 3 78888889999999999988887777
Q ss_pred HHHHhhcccC--CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC
Q 018145 186 ERILEHYEGF--QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~ 255 (360)
..+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++ +.+.
T Consensus 153 ~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 153 QLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred HHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence 78888887 6 77899999999999999999999999999999998888877653 469999999998 6666
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
. |+|++++++|+|+++++.++|++++++|+|||++++.|...++....+ .....+++.|+....+++.++.++|.+
T Consensus 232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 5 999999999999999999999999999999999999998876543222 223456666665544788999999999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEe
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
+++++||+.+++.+.++..++|+++
T Consensus 309 ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999888777777664
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=327.36 Aligned_cols=311 Identities=20% Similarity=0.350 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAM-GVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~-~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.+...++++++. +++.++++++++++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++ .+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~----~~ 98 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINL----ED 98 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ET
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEe----eC
Confidence 445567777775 8999999999999999999997 69999999999999 99999999999999999997 34
Q ss_pred ceeecchhchhhhcCCCC---CChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCcc---HHHHHH
Q 018145 101 RLYALNPVSKYFVSNKDG---ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPR---FNETYH 174 (360)
Q Consensus 101 ~~y~~t~~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~ 174 (360)
+.|++|+.+..++.+.++ .++++++.+. .+..+..|.+|.++++++.+ |+++..+++ ....|.
T Consensus 99 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~~~~f~ 167 (359)
T 1x19_A 99 GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTREDNLYF 167 (359)
T ss_dssp TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHHHHHHH
T ss_pred CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHHHHHHH
Confidence 699999987666666555 5778877664 45678899999999998753 667778888 889999
Q ss_pred HHHhhcch-hhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEe
Q 018145 175 EAMFNHST-IAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVG 246 (360)
Q Consensus 175 ~~m~~~~~-~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~ 246 (360)
..|..... .....+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|+|.+++.++++ ++++++.
T Consensus 168 ~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 246 (359)
T 1x19_A 168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 99998887 77788888887 778899999999999999999999999999999998888877642 4699999
Q ss_pred cCCCC-CCCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 247 GNMFE-SVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 247 ~d~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+|+++ +++.+|+|++.+++|+|+++++.++|++++++|||||+++|.|...++. ..+.. ...+ .++....+++
T Consensus 247 ~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~---~~~~--~~~~~~~~g~ 320 (359)
T 1x19_A 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNF---DYLS--HYILGAGMPF 320 (359)
T ss_dssp CCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCH---HHHH--HHGGGGGSSC
T ss_pred CccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchH---HHHH--HHHHhcCCCC
Confidence 99998 5666699999999999999889999999999999999999999887654 22211 1122 2332223466
Q ss_pred c----CCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 326 E----RTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 326 ~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
. ++.++|.++|+++||+.+++.+.+ ..++|+++|
T Consensus 321 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 321 SVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp CCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 6 899999999999999999999887 788999887
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=323.63 Aligned_cols=310 Identities=14% Similarity=0.209 Sum_probs=257.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
..+++++.+++.+++|++|+++|||+.|.. |.|++|||+++|+ +++.++|||++|++.|++++ .++.|.+
T Consensus 26 ~~l~~~~~~~~~~~~l~~a~~lgif~~l~~--~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~----~~~~y~~ 95 (352)
T 3mcz_A 26 VDLVKLSDQYRQSAILHYAVADKLFDLTQT--GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK----EGDAFRN 95 (352)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTHHHHTTS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCChHHHhCC--CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe----cCCeeec
Confidence 338999999999999999999999999975 9999999999999 99999999999999999997 3478999
Q ss_pred chhchhhhcCCCCCChHHHhhccCChhHHHhhhchhHHHhcCCCc-chhccCCChhhhhccCccHHHHHHHHHhhcchhh
Q 018145 106 NPVSKYFVSNKDGASLGHFMALPLDKVFMESWLGLKDAVMEGGIP-FNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIA 184 (360)
Q Consensus 106 t~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 184 (360)
|+.++.++.+..+.+++.++.+. ...+..|.++.+.+++|.+. |.. ..++..+++....|...|......
T Consensus 96 t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~~~f~~~m~~~~~~- 166 (352)
T 3mcz_A 96 TALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQP- 166 (352)
T ss_dssp CHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHHHHHHHHHHhhhhh-
Confidence 99999888777767777776542 34677899999999998653 221 123457888888999999873322
Q ss_pred HHHHHhhcccCCC-cceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-C--C
Q 018145 185 MERILEHYEGFQN-VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-S--V 253 (360)
Q Consensus 185 ~~~i~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~--~ 253 (360)
...+++.++ +.+ +.+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. ++|+++.+|+++ + .
T Consensus 167 ~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 167 MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 347788887 666 899999999999999999999999999999998888877542 479999999998 4 5
Q ss_pred CCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 254 PEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 254 ~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+.. |+|++++++|+|+++++.++|++++++|||||+|+|.|.+.++....+ .....+++.|+....+++.++.++|
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHH
Confidence 655 999999999999999999999999999999999999999887653322 2334667777655557889999999
Q ss_pred HHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.++|+++||++++.. .+...+++++|
T Consensus 323 ~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 323 AGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHHHCCCceeeec--cCceEEEEEec
Confidence 999999999999853 35577887775
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=172.40 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~ 263 (360)
.+++.+|||||||+|..+..+++.+ |+++++++|+ +.+++.|+++ .+|+++.+|+.+ +.+..|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4677899999999999999999986 6789999999 8999988652 479999999988 666669999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhh-hhhHHHhh-hc------------CCCccCCH
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETS-LLDVLLMT-RD------------GGGRERTK 329 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~~~-~~------------~~~~~~t~ 329 (360)
+||++++++...+|++++++|||||+|++.|...+.++.. ...... ..++.... .+ .--...+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~--~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKV--GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHH--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 9999998888899999999999999999999887654211 000000 00110000 00 00123588
Q ss_pred HHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 330 KEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
+++.++|+++||+.++++.-- .+.++ .++|
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~-iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSL-VALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEE-EEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEE-EEEE
Confidence 999999999999999886432 33333 4444
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-20 Score=160.21 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=126.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC-cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
..++..++...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444345678999999999999999999999999999999 8888776542 479999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh------------hhcCCCcc
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM------------TRDGGGRE 326 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 326 (360)
|++..++|++++++...+|++++++|||||++++.+...+........ ....+...... ........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998887889999999999999999999877543110000 00000000000 00012345
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCceeEEEEe
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++.++|.++|+++||+.+++.......+++..+
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 688999999999999999998776666655443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=149.02 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=121.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC-cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~-D~i~~ 261 (360)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 446789999999999999999987 568999998 8888877654 379999999988 55533 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH--------HhhhcCCCccCCHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL--------LMTRDGGGRERTKKEYT 333 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~t~~e~~ 333 (360)
..++|++++++...+|++++++|||||++++.++..+.... ........ ..... ....++.++|.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHH-HSCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcc-hhhcCCHHHHH
Confidence 99999999887777999999999999999999976643210 00011100 00000 12345889999
Q ss_pred HHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 334 ELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++|+++||+++.+. ..+..|+++..|
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehh
Confidence 99999999866654 457888887754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=156.72 Aligned_cols=168 Identities=14% Similarity=0.218 Sum_probs=120.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..++ .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 44555554 4444 9999999999999999998 8889999998 8888877653 479999999988 66644
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhh-hhHHHhhhcCCCccCCHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSL-LDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~ 333 (360)
|+|++..++||++ +...+|++++++|||||++++.+...+.............. ..+..... .....++.++|.
T Consensus 111 ~~D~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 187 (219)
T 3dlc_A 111 YADLIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERFQ 187 (219)
T ss_dssp CEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHHH
T ss_pred cccEEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHHH
Confidence 9999999999986 44689999999999999999988654321000000000000 00000000 022345789999
Q ss_pred HHHHHcCCceeeEEecCCceeEEEEe
Q 018145 334 ELAIAAGFKGINFASCVCNLYIMEFF 359 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~~~~~~vi~~~ 359 (360)
++|+++||+.+++.....+.+++..+
T Consensus 188 ~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 188 NVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHcCCCeEEEEecCCceEEEEec
Confidence 99999999999999887777765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=149.08 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=125.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..++ ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34555555 6677899999999999999999997 7889999998 8888877653 479999999988 55544
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++..++|++++ ...+|++++++|||||++++.++......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999974 46899999999999999999997665421110 0122358899999
Q ss_pred HHHHcCCceeeEEecCCceeEEEEeC
Q 018145 335 LAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++++||+++++....+....+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999998888777777765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=152.36 Aligned_cols=155 Identities=18% Similarity=0.320 Sum_probs=122.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.. |
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEE
Confidence 45566565 6677899999999999999999987 678999998 8888877654 689999999988 66543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..++||+++++...+|++++++|||||++++.++..+..... . ..... .... .+...++.++|.++++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~---~~~~~-~~~~--~~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW--D---DEFKE-YVKQ--RKYTLITVEEYADILT 194 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC--C---HHHHH-HHHH--HTCCCCCHHHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc--h---HHHHH-HHhc--CCCCCCCHHHHHHHHH
Confidence 9999999999988888999999999999999999999876541111 0 11111 1111 1445679999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+++++....
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-19 Score=153.74 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=115.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 468999999999999999999877 7888888 8888877653 679999999988 65543 99999999777
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh--cCC------------------CccC
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR--DGG------------------GRER 327 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~ 327 (360)
+..++...+|++++++|||||++++.++..+...... ...........+... ... ...+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 194 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence 7777888999999999999999999987532210000 000000000000000 000 0111
Q ss_pred CHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 328 TKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+ .+|.++|+++||+.+++.......++|+.+|
T Consensus 195 ~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 195 G-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp C-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred c-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 2 4899999999999999999888888999875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=146.39 Aligned_cols=151 Identities=15% Similarity=0.296 Sum_probs=115.7
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cE
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DA 258 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~ 258 (360)
...+...++..+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSE
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeE
Confidence 3344444443556789999999999999999988 456899998 8899888765 9999999876 45543 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++||+++++...+|++++++|||||++++..+.... .. ........ ......++.++|.+++++
T Consensus 105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~----~~~~~~~~--~~~~~~~~~~~l~~~l~~ 173 (240)
T 3dli_A 105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-----LY----SLINFYID--PTHKKPVHPETLKFILEY 173 (240)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HH----HHHHHTTS--TTCCSCCCHHHHHHHHHH
T ss_pred EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hH----HHHHHhcC--ccccccCCHHHHHHHHHH
Confidence 99999999999888899999999999999999998765322 11 11111111 123456789999999999
Q ss_pred cCCceeeEEecC
Q 018145 339 AGFKGINFASCV 350 (360)
Q Consensus 339 aGf~~~~~~~~~ 350 (360)
+||+++++....
T Consensus 174 aGf~~~~~~~~~ 185 (240)
T 3dli_A 174 LGFRDVKIEFFE 185 (240)
T ss_dssp HTCEEEEEEEEC
T ss_pred CCCeEEEEEEec
Confidence 999999887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=150.00 Aligned_cols=154 Identities=17% Similarity=0.316 Sum_probs=116.5
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
...+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 445666665 56778999999999999999999875 8889998 8888877643 579999999988 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCCCccCCHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGGGRERTKKEYT 333 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~ 333 (360)
|+|++..++||+++. ..+|++++++|||||+|++.++..+.. +.. ..+........ ......++.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN---DAF---DVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS---HHH---HHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC---HHH---HHHHHHHHHhcCccccCCCCHHHHH
Confidence 999999999999854 689999999999999999999876542 111 11111111111 1134567899999
Q ss_pred HHHHHcCCceeeEEec
Q 018145 334 ELAIAAGFKGINFASC 349 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~~ 349 (360)
++|+++||+++.+...
T Consensus 175 ~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 175 KMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEEEe
Confidence 9999999998877654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-18 Score=144.45 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=112.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCCCCCC-C-cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFESVPE-G-DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~~~~~-~-D~i~~ 261 (360)
.++..+....++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 44444443456679999999999999999998 568999998 8888887653 5799999999885443 3 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC------CccCCHHHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG------GRERTKKEYTEL 335 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~l 335 (360)
.+++||++++....+|++++++|||||++++.+...+.......... ............+ ....+.++|.++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAELTER 191 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence 99999999887889999999999999999999987643210000000 0000000000001 123589999999
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
++++||++.....
T Consensus 192 l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 192 LTALGWSCSVDEV 204 (218)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCEEEeeec
Confidence 9999999544443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=149.16 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=120.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+.....|
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD 131 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVD 131 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCS
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCee
Confidence 35566665 66778999999999999999997764 49999998 8888877542 479999999865212339
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----CchhhhhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----VSSAARETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+|++..++||+++++...+|++++++|||||++++.++..+.... .+.........++......+++..++.++|
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 211 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMV 211 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHH
Confidence 999999999998777889999999999999999999987654210 000000001112221112346777899999
Q ss_pred HHHHHHcCCceeeEEecC
Q 018145 333 TELAIAAGFKGINFASCV 350 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~ 350 (360)
.++++++||+++++...+
T Consensus 212 ~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 212 QECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHTTTCEEEEEEECH
T ss_pred HHHHHhCCcEEEEEEeCc
Confidence 999999999999987653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=147.55 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=120.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 45666665 6678899999999999999999987 689999998 7888776542 479999999988 66643
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++..++||+++. ..+|++++++|||||++++.++......... .....+..... ......++.++|.+
T Consensus 129 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~ 201 (273)
T 3bus_A 129 SFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYES 201 (273)
T ss_dssp CEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHHH
T ss_pred CccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHHH
Confidence 999999999999754 6899999999999999999998765421111 01111111111 13566789999999
Q ss_pred HHHHcCCceeeEEecC
Q 018145 335 LAIAAGFKGINFASCV 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
+++++||+++++...+
T Consensus 202 ~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 202 DVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEECc
Confidence 9999999999887654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=148.62 Aligned_cols=163 Identities=17% Similarity=0.262 Sum_probs=123.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
..++..++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ ++++++.+|+.+. +..
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f 138 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV 138 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence 45666665 67788999999999999999999976 88999998 8888877653 3799999998765 433
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhh-----hhhhhhhHHHhhhcCCC
Q 018145 257 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAA-----RETSLLDVLLMTRDGGG 324 (360)
Q Consensus 257 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 324 (360)
|+|++..++||+++ +....+|++++++|||||++++.+...+......... ......++......+++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 218 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 218 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence 99999999999944 5678999999999999999999998765421000000 00001122222233567
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecCC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCVC 351 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 351 (360)
..++.+++.++++++||+++++.....
T Consensus 219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 219 RLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 888999999999999999999877653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=150.53 Aligned_cols=149 Identities=17% Similarity=0.287 Sum_probs=116.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..++..++ ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 35566565 5567899999999999999999886 567889998 8888877543 579999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++.+++||+++++...+|++++++|||||++++.++....... ..+ .......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVD-----KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEE-----TTTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eec-----ccCCcccCCHHHHHHHHH
Confidence 999999999999888899999999999999999999975533210 011 011334568999999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999987654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=148.55 Aligned_cols=154 Identities=16% Similarity=0.238 Sum_probs=117.9
Q ss_pred HHHHhhc---ccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CC
Q 018145 186 ERILEHY---EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV 253 (360)
Q Consensus 186 ~~i~~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~ 253 (360)
..+++.+ ....++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4555555 126678899999999999999999986 468999998 8888877542 579999999988 66
Q ss_pred CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 254 PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 254 ~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
+.+ |+|++..++||+++ ...+|++++++|||||++++.++..+...... ....+.... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh-c-CCCCCCHHH
Confidence 654 99999999999986 57899999999999999999998775432211 011111111 1 233568999
Q ss_pred HHHHHHHcCCceeeEEecC
Q 018145 332 YTELAIAAGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~ 350 (360)
|.++++++||+++++....
T Consensus 217 ~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHCCCeEEEEEECc
Confidence 9999999999999887653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=149.87 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEecc-ccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMKW-ILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh~~~~ 270 (360)
+++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 4568999999999999999999854 6888888 8888887653 689999999988 55444 9999998 9999864
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh---------h-----------hhhhhHHHhhhcCC------
Q 018145 271 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR---------E-----------TSLLDVLLMTRDGG------ 323 (360)
Q Consensus 271 -~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------ 323 (360)
++...+|++++++|||||+|++.+...+.......... . .....+.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 56779999999999999999997654433211000000 0 00000000000001
Q ss_pred -----CccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 324 -----GRERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 324 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999977766666776664
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=142.91 Aligned_cols=152 Identities=17% Similarity=0.313 Sum_probs=115.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-- 256 (360)
.+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 12 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 88 (239)
T 1xxl_A 12 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 88 (239)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred hHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence 4455555 67789999999999999999999875 7888888 8888877542 579999999987 66543
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH-hhhcCCCccCCHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||+++ ...+|++++++|||||++++.+...+.. ... ..+..... .........++.++|.++
T Consensus 89 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (239)
T 1xxl_A 89 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPED---PVL---DEFVNHLNRLRDPSHVRESSLSEWQAM 160 (239)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSS---HHH---HHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred EEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCC---hhH---HHHHHHHHHhccccccCCCCHHHHHHH
Confidence 99999999999985 4689999999999999999999876542 111 11111111 111113456789999999
Q ss_pred HHHcCCceeeEEec
Q 018145 336 AIAAGFKGINFASC 349 (360)
Q Consensus 336 l~~aGf~~~~~~~~ 349 (360)
|+++||+++++...
T Consensus 161 l~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 161 FSANQLAYQDIQKW 174 (239)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHCCCcEEEEEee
Confidence 99999998887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-18 Score=144.11 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=113.7
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 558899998 8888888763 689999999988 55543 9999999999998778
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCC-
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVC- 351 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~- 351 (360)
...+|++++++|||||++++.++..+... . ... . ......++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~---~~~----~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------P---MYH----P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------E---ECC----S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------h---hhc----h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 89999999999999999999887554310 0 000 0 0123456899999999999999999987653
Q ss_pred ceeEE
Q 018145 352 NLYIM 356 (360)
Q Consensus 352 ~~~vi 356 (360)
.+..+
T Consensus 186 p~~~l 190 (203)
T 3h2b_A 186 PHAYL 190 (203)
T ss_dssp SEEEE
T ss_pred cchhh
Confidence 34433
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=147.58 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=122.4
Q ss_pred HhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecC
Q 018145 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGN 248 (360)
Q Consensus 177 m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d 248 (360)
+..........+++.++.+.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3333444445666666545677899999999999999999986 578999998 8888877642 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCc
Q 018145 249 MFE-SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGR 325 (360)
Q Consensus 249 ~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (360)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.++.......... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66543 9999999999984 678999999999999999999987765321110 1111111111 123
Q ss_pred cCCHHHHHHHHHHcCCceeeEEecC
Q 018145 326 ERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 326 ~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.++.++|.++++++||+++++....
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999887653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=145.00 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=116.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..+....++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 44555543566789999999999999999999985 8999998 8888876542 459999999977 65543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||++ ...+|++++++|||||++++.++......... ......... ....++.++|.++
T Consensus 115 fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (257)
T 3f4k_A 115 LDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCIDK 182 (257)
T ss_dssp EEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHHH
T ss_pred EEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 9999999999983 45789999999999999999998754432211 111211111 1235689999999
Q ss_pred HHHcCCceeeEEecCC
Q 018145 336 AIAAGFKGINFASCVC 351 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~ 351 (360)
++++||+++++...+.
T Consensus 183 l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 183 MERAGYTPTAHFILPE 198 (257)
T ss_dssp HHHTTEEEEEEEECCG
T ss_pred HHHCCCeEEEEEECCh
Confidence 9999999999877663
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=142.12 Aligned_cols=152 Identities=11% Similarity=0.141 Sum_probs=115.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
..+++.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++..+++++.+|+.+ +++.. |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56779999999999999999998 6789999999 8999999888899999999988 66543 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
.+++||++ +...+|++++++|| ||++++.++..+.... .+. ...+...... . +...++.+++. +|+++||
T Consensus 101 ~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWL---YDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGG---GGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHH---HHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 99999996 45689999999999 9999999986543211 111 0111111111 1 23445778888 9999999
Q ss_pred ceeeEEecC
Q 018145 342 KGINFASCV 350 (360)
Q Consensus 342 ~~~~~~~~~ 350 (360)
+.+++....
T Consensus 171 ~~v~~~~~~ 179 (261)
T 3ege_A 171 RRVEAIPFL 179 (261)
T ss_dssp SEEEEEECC
T ss_pred CceeEEEec
Confidence 998887653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=147.18 Aligned_cols=163 Identities=15% Similarity=0.252 Sum_probs=121.0
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D 257 (360)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+.....|
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD 157 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD 157 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcC
Confidence 45566665 6677899999999999999999987 568999998 8888877643 469999999866212349
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc----hhh-hhhhhhhHHHhhhcCCCccCCHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS----SAA-RETSLLDVLLMTRDGGGRERTKKEY 332 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~e~ 332 (360)
+|++..++||+++++...+|++++++|||||++++.++..+...... ... ......++......+++..++.+++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 237 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM 237 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHH
Confidence 99999999999877888999999999999999999998765421000 000 0000112222122346777899999
Q ss_pred HHHHHHcCCceeeEEecC
Q 018145 333 TELAIAAGFKGINFASCV 350 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~ 350 (360)
.++++++||+++++....
T Consensus 238 ~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 238 VEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHTTCBCCCCEECH
T ss_pred HHHHHhCCCEEEEEEecc
Confidence 999999999999887643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=144.95 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=116.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 45555555 6677899999999999999999987 678999998 8888877542 479999999988 44333
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++|++++ ...+|++++++|||||++++.++.....+.... ....... ......++.++|.++
T Consensus 104 fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~ 173 (256)
T 1nkv_A 104 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVGA 173 (256)
T ss_dssp EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHHH
T ss_pred CCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHHH
Confidence 99999999999874 468999999999999999999987654322111 0100000 112245689999999
Q ss_pred HHHcCCceeeEEecC
Q 018145 336 AIAAGFKGINFASCV 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++++||+.+++...+
T Consensus 174 l~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 174 FDDLGYDVVEMVLAD 188 (256)
T ss_dssp HHTTTBCCCEEEECC
T ss_pred HHHCCCeeEEEEeCC
Confidence 999999998876543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=146.03 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=117.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~- 256 (360)
.++..++...++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567789999999999999999998 8889999999 8888877643 569999999987 55543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++|+++ ...+|++++++|||||++++.++......... ........ . ....++.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~--~-~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMD--A-YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHH--H-CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHH--h-CCCCCCHHHHHHH
Confidence 9999999999983 36789999999999999999998764432211 11121111 1 2345689999999
Q ss_pred HHHcCCceeeEEecCC
Q 018145 336 AIAAGFKGINFASCVC 351 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~ 351 (360)
++++||+++++...+.
T Consensus 183 l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 183 IHKAGYLPVATFILPE 198 (267)
T ss_dssp HHHTTEEEEEEEECCG
T ss_pred HHHCCCEEEEEEECCH
Confidence 9999999999987663
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=147.28 Aligned_cols=151 Identities=17% Similarity=0.305 Sum_probs=114.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 8888877542 579999999988 55543 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC---CCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI---PEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
+|++++. ..+|++++++|||||++++.++..... +...... ..+..+.......++..++..+|.++|+++||
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI--EAWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH--HHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH--HHHHHHHHHHHhcCCCcchHHHHHHHHHHCCC
Confidence 9999865 489999999999999999998654221 1111110 11111111111124556677899999999999
Q ss_pred ceeeEEec
Q 018145 342 KGINFASC 349 (360)
Q Consensus 342 ~~~~~~~~ 349 (360)
+++++...
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99888654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=136.74 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=115.5
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-CCCcEEEecCCCCCCCCC--cEEEeccc
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-YAGVEHVGGNMFESVPEG--DAILMKWI 264 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~~~--D~i~~~~v 264 (360)
++.++ ..++.+|||||||+|.++..+++.+. +++++|+ +.+++.+++ .+++++..+| .+++.. |+|++..+
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESC
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccc
Confidence 33344 56778999999999999999999874 8899998 888887765 4789999999 444433 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
+|++++ ...+++++++.|||||++++.++........+ .....++.++|.++++ ||+++
T Consensus 85 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 85 FHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp STTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEEE
T ss_pred hhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEEE
Confidence 999874 46899999999999999999997765421111 0112358999999999 99999
Q ss_pred eEEecCCceeEEEEeC
Q 018145 345 NFASCVCNLYIMEFFK 360 (360)
Q Consensus 345 ~~~~~~~~~~vi~~~k 360 (360)
++.........+++.|
T Consensus 144 ~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 144 KRFNPTPYHFGLVLKR 159 (170)
T ss_dssp EEECSSTTEEEEEEEE
T ss_pred EccCCCCceEEEEEec
Confidence 9999887777776653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=144.16 Aligned_cols=163 Identities=16% Similarity=0.160 Sum_probs=116.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEe-ccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILM-KWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~-~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999976 7888888 8888887654 679999999988 55444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh-hh-------------------hhhhhhHHHhhhcCCC-----
Q 018145 271 -DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA-AR-------------------ETSLLDVLLMTRDGGG----- 324 (360)
Q Consensus 271 -~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~----- 324 (360)
++...+|++++++|||||++++.++..++....... .+ ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 677899999999999999999987655432110000 00 0000000000000011
Q ss_pred ------ccCCHHHHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 325 ------RERTKKEYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 325 ------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777766556777888775
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=147.84 Aligned_cols=165 Identities=15% Similarity=0.185 Sum_probs=118.7
Q ss_pred CCCcceEEEEcCCcchHHHHHH-hhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMIT-SKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~ 263 (360)
..++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4667899999999999999986 6788999999999 8888877642 359999999988 55544 9999999
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhh-----h---hhhhHHHhhhcCC--CccCCHHHH
Q 018145 264 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARE-----T---SLLDVLLMTRDGG--GRERTKKEY 332 (360)
Q Consensus 264 vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~--~~~~t~~e~ 332 (360)
++||+++. ....+|++++++|||||++++.+...+...... ..+. . ............. ...++.++|
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 99999654 445799999999999999999887664321110 0000 0 0000011111101 134799999
Q ss_pred HHHHHHcCCceeeEEecCCc-eeEEEEeC
Q 018145 333 TELAIAAGFKGINFASCVCN-LYIMEFFK 360 (360)
Q Consensus 333 ~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 360 (360)
.++|+++||+++++.....+ ...+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999876543 33555554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=140.67 Aligned_cols=141 Identities=17% Similarity=0.285 Sum_probs=110.1
Q ss_pred CCcceEEEEcCCc---chHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCC------------CC-
Q 018145 196 QNVERLVDVGGGF---GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES------------VP- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~------------~~- 254 (360)
.+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.++++ ++++++.+|+.++ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3458999999999 999888888899999999999 8999887653 6899999999762 22
Q ss_pred -CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH
Q 018145 255 -EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 255 -~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 333 (360)
..|+|++..+|||+++++...+|++++++|||||+|++.+...+. ... .....+.+.... .....++.+++.
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~-~~~~~~s~~ei~ 228 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENL-GEGWARTPEEIE 228 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHH-SCCCCBCHHHHH
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcC-CCCccCCHHHHH
Confidence 339999999999999877889999999999999999999976532 111 111222222221 245678999999
Q ss_pred HHHHHcCCceee
Q 018145 334 ELAIAAGFKGIN 345 (360)
Q Consensus 334 ~ll~~aGf~~~~ 345 (360)
++| .||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5998775
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=142.00 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=106.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-C-CcEEEecCCCCCCCC-C-cEEEeccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-A-GVEHVGGNMFESVPE-G-DAILMKWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~d~~~~~~~-~-D~i~~~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++. . +++++.+|+.+..+. . |+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999999876 5777887 8888877653 2 799999999874333 3 99999999999985
Q ss_pred hHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhH--------HHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 271 DHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV--------LLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 271 ~~~~~~L~~i~-~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
. ..+|++++ ++|||||++++.++..... .......... ...........++.++|.++|+++||
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 4 68999999 9999999999988654321 0000000000 00001123456799999999999999
Q ss_pred ceeeEEe
Q 018145 342 KGINFAS 348 (360)
Q Consensus 342 ~~~~~~~ 348 (360)
+++++..
T Consensus 192 ~~~~~~~ 198 (250)
T 2p7i_A 192 QVTYRSG 198 (250)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 9988864
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=139.54 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=110.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC-cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~ 271 (360)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+ +.+.. |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 568899998 8888888765578899999887 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC-CceeeEEecC
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG-FKGINFASCV 350 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 350 (360)
+...+|++++++|||||++++..+........ .. ......++.++|.++|+++| |+++++....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 88999999999999999999986543321000 00 01123468999999999999 9999987543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=139.02 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=107.2
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------------CCcEEEecC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGGN 248 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~d 248 (360)
++..+. ..++.+|||+|||+|..+..+++. +.+++++|+ +.+++.|+++ .+++++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 334443 456789999999999999999997 468999998 8888877542 479999999
Q ss_pred CCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 249 MFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 249 ~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
+.+ +.+ .. |+|++..++|++++++..+++++++++|||||+++++....+.. . .....
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~-~-----------------~~~~~ 152 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA-L-----------------LEGPP 152 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS-S-----------------SSSCC
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc-c-----------------cCCCC
Confidence 998 543 23 99999999999998888899999999999999966555433211 0 00011
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...+.+++.+++++ ||+++.+....
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCHHHHHHHhcC-CcEEEEecccc
Confidence 22578999999998 99987776543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=144.23 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=114.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D 257 (360)
.++..+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567899999999999999999999985 89999998 8888776542 379999999998 55544 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec-----C---CCCCCchhhhhhhhhhHHHhh-hcCCCccCC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV-----P---EIPEVSSAARETSLLDVLLMT-RDGGGRERT 328 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t 328 (360)
+|++..++|++++. ..+|++++++|||||++++.++.. . .+...+.......+..+.... ...+....+
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 99999999999854 689999999999999999999761 1 110000000011122211111 012444556
Q ss_pred HHHHHHHHHHcCCceeeEEec
Q 018145 329 KKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..++.++|+++||+.+++...
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEc
Confidence 778999999999999877443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=148.41 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=139.8
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCCCCCChHHHhh-
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKDGASLGHFMA- 126 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~~~~~~~~~~~- 126 (360)
|+|..| . +|.|+++||+.+|+ +++.+++||+.|.+.|+++. .++ |++|+.++.++...+.....+...
T Consensus 47 ~ll~~L-~-~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~----~~~-~~lt~~~~~~l~~~~~~~~~~~~~~ 115 (373)
T 2qm3_A 47 NVLSAV-L-ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTF----EDG-VKLTEKGEELVAEYGIGKRYDFTCP 115 (373)
T ss_dssp HHHHHH-H-HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC----SSS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHh-c-CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEE----CCC-EEECHHHHHHHHhcCccccccccch
Confidence 789999 5 59999999999999 99999999999999999986 224 999998876654422111100000
Q ss_pred c-c----CChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceE
Q 018145 127 L-P----LDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERL 201 (360)
Q Consensus 127 ~-~----~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~v 201 (360)
. . ..+.+...|..+.+.++....+. ..|+.....++ ....... .... .. ..++.+|
T Consensus 116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~l---------~~~~-~~-~~~~~~V 176 (373)
T 2qm3_A 116 HCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARVI---------LMHT-RG-DLENKDI 176 (373)
T ss_dssp --------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHHH---------HHHH-TT-CSTTCEE
T ss_pred hhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHHH---------HHhh-cC-CCCCCEE
Confidence 0 0 00111112334444444332111 11111011111 1111100 0011 11 2346899
Q ss_pred EEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC----C-cEEEeccccccCC
Q 018145 202 VDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE----G-DAILMKWILHCWD 269 (360)
Q Consensus 202 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~----~-D~i~~~~vlh~~~ 269 (360)
|||| |+|.++..+++..|+.+++++|+ +.+++.|+++ .+|+++.+|+.+.+|. . |+|++...++..
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~- 254 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE- 254 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-
Confidence 9999 99999999999988889999999 8999888653 3799999999884442 3 999998776643
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
....++++++++|||||++++.+..
T Consensus 255 --~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 255 --AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp --HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred --HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 3578999999999999977666544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=143.73 Aligned_cols=138 Identities=16% Similarity=0.243 Sum_probs=111.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~vlh 266 (360)
++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998887 568999998 8888877643 258899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
+++++....+|++++++|||||++++.++..+.. . .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998878899999999999999999999876541 0 0110 11233458999999999999999998
Q ss_pred EecC
Q 018145 347 ASCV 350 (360)
Q Consensus 347 ~~~~ 350 (360)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=149.13 Aligned_cols=144 Identities=17% Similarity=0.294 Sum_probs=112.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC--------------CCcEEEecCCCC-------C
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFE-------S 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~-------~ 252 (360)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 7889999999 8888887653 589999999987 4
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 253 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 253 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
++.. |+|++..++|++++ ...+|++++++|||||+|++.+......... .. ........ ...+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~-----~~~~~~~~-~~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE-AA-----QQDPILYG-ECLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH-HH-----HHCHHHHH-TTCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH-hH-----hhhHHHhh-cccccCCCHH
Confidence 4443 99999999999875 4689999999999999999999876542111 10 01111111 1234567889
Q ss_pred HHHHHHHHcCCceeeEEe
Q 018145 331 EYTELAIAAGFKGINFAS 348 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~ 348 (360)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=137.92 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=109.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~ 268 (360)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45689999999999999999998 568899998 8888887664 679999999988 66543 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
++ ...+|++++++|+|||++++.++........ ...... ... ......++.+++.++++++||++++...
T Consensus 130 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EE--PLRALNEIKRVLKSDGYACIAILGPTAKPRE------NSYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG------GGGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh------hhhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 74 4689999999999999999998654332110 011111 110 1133457899999999999999998864
Q ss_pred c
Q 018145 349 C 349 (360)
Q Consensus 349 ~ 349 (360)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=136.69 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=104.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCCC--CcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPE--GDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~~--~D~i 259 (360)
..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .+++++.+|+.. +.+. .|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34568999999999999999999999899999998 8888887653 179999999966 4332 3999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH----HH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT----EL 335 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 335 (360)
++..++||+++++..++|++++++|||||.+++....... .... ......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~-~~~~------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYN-FHYG------NLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGG-GCCC------CT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhh-hhhc------ccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 9999999999888889999999999999966554432111 0000 000000000 1123345888888 88
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (219)
T 3jwg_A 179 AEKYGYSVRFL 189 (219)
T ss_dssp HHHHTEEEEEE
T ss_pred HHHCCcEEEEE
Confidence 99999975444
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=144.91 Aligned_cols=163 Identities=9% Similarity=0.083 Sum_probs=113.8
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCC-C
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-S 252 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~ 252 (360)
....++..++ . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +
T Consensus 71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3455666654 2 3459999999999999999988 467889998 8888887653 569999999998 5
Q ss_pred CCCC-cEEEe-ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC---CCchhhhh---hhhh-----------
Q 018145 253 VPEG-DAILM-KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP---EVSSAARE---TSLL----------- 313 (360)
Q Consensus 253 ~~~~-D~i~~-~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~---~~~~~~~~---~~~~----------- 313 (360)
.+.. |+|++ ..++|++++++...+|++++++|||||+|++..+..+... ........ ...+
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 5544 98885 5778888877889999999999999999999876553210 00000000 0000
Q ss_pred --hHHHhh----------hcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 314 --DVLLMT----------RDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 314 --~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.... .....+.++.++|.++|+++||+++++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 000000 0001124599999999999999999998876
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=139.70 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=107.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-C-cEEEecccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE-G-DAILMKWILHC 267 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~-~-D~i~~~~vlh~ 267 (360)
+.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999877 5678999998 8888877543 3599999999983343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+++++...+|++++++|||||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888999999999999999999988654321110 1122588999999999999999987
Q ss_pred ecC
Q 018145 348 SCV 350 (360)
Q Consensus 348 ~~~ 350 (360)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 665
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=136.48 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=104.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCC--CCcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVP--EGDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~--~~D~i 259 (360)
..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.++++ .+++++.+|+.. +.+ ..|+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999999899999998 8888877543 279999999866 433 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH----HH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT----EL 335 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~l 335 (360)
++..++||+++++...+|++++++|||||.+++....... ..+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 9999999999888899999999999999976665432100 0000000000000 1123345888888 89
Q ss_pred HHHcCCceeeE
Q 018145 336 AIAAGFKGINF 346 (360)
Q Consensus 336 l~~aGf~~~~~ 346 (360)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (217)
T 3jwh_A 179 TERFAYNVQFQ 189 (217)
T ss_dssp HHHSSEEEEEC
T ss_pred HHHcCceEEEE
Confidence 99999986443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-16 Score=137.21 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=112.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh------HHHhCCCC-------CCcEEEecC-CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH------VVQDAPSY-------AGVEHVGGN-MF 250 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~d-~~ 250 (360)
.+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.++++ ++++++.+| +.
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4555565 6678899999999999999999996 7789999998 44 67766542 479999998 43
Q ss_pred C---CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC---
Q 018145 251 E---SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG--- 322 (360)
Q Consensus 251 ~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 322 (360)
. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+........................
T Consensus 113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV 190 (275)
T ss_dssp TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence 3 33433 9999999999998664 478888888888999999998775432111000000011101100000
Q ss_pred --CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 --GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 --~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++++++||+++++...
T Consensus 191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 191 ANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 123579999999999999999888665
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=133.06 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=109.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-CCCCC--cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~~~--D~i 259 (360)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +.+.. |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999998 568999998 7777766541 257999999988 55543 999
Q ss_pred EeccccccCCh-hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc--------------CCC
Q 018145 260 LMKWILHCWDD-DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--------------GGG 324 (360)
Q Consensus 260 ~~~~vlh~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 324 (360)
++..++|++++ +....+|++++++|||||++++.++...... .... ......+...... ...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYR-KRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHH-HHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHH-HHhhhhccchhhhcceEecccccCCcceee
Confidence 99999999975 4466899999999999999999997654321 1100 0001111110000 001
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 325 RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..++.++|.++|+++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 3569999999999999999988643
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=139.98 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=112.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC-cEEEec
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG-DAILMK 262 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~-D~i~~~ 262 (360)
.+++.++ ..++.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++++..+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7789999998 8888887654 689999999988 55444 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh------hcCCCccCCHHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT------RDGGGRERTKKEYTELA 336 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~t~~e~~~ll 336 (360)
.++|++++ ...+|++++++|||||++++..+..... .............. .......++.++|.++|
T Consensus 125 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 99999875 4689999999999999999987643221 01111111111100 00012356899999999
Q ss_pred HHcCCceeeEEec
Q 018145 337 IAAGFKGINFASC 349 (360)
Q Consensus 337 ~~aGf~~~~~~~~ 349 (360)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999998877543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=136.18 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=109.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i 259 (360)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3444454 45678999999999999999998732 38889998 8888877654 479999999987 55443 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CCCCchhh--------hhhhh-------hhHHHhhhcC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--IPEVSSAA--------RETSL-------LDVLLMTRDG 322 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~--~~~~~~~~--------~~~~~-------~~~~~~~~~~ 322 (360)
++..++|++++ ...+|++++++|||||++++.++.... .....+.. ..... ..+ .....
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 187 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDW--LAKGV 187 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTH--HHHSC
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeee--ccCce
Confidence 99999999874 568999999999999999998753210 00000000 00000 000 00011
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
....++.++|.++|+++||+++++...
T Consensus 188 ~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 188 VKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 223368999999999999999998764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=139.97 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=110.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
.++..++ ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+ + +.. |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4556565 56678999999999999999999999999999999 8888887653 689999999987 5 433 99999
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhH--HHhhh----cCCCccCCHHHHHHH
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDV--LLMTR----DGGGRERTKKEYTEL 335 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~l 335 (360)
+.++|++++ ...+|++++++|||||++++.++..... +........... +.... ......++.++|.++
T Consensus 102 ~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 999999874 5689999999999999999988643211 100000000000 00000 012345689999999
Q ss_pred HHHcCCce
Q 018145 336 AIAAGFKG 343 (360)
Q Consensus 336 l~~aGf~~ 343 (360)
|+++||++
T Consensus 177 l~~aGf~v 184 (259)
T 2p35_A 177 LSPKSSRV 184 (259)
T ss_dssp HGGGEEEE
T ss_pred HHhcCCce
Confidence 99999974
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-16 Score=129.33 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=107.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEe
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILM 261 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~ 261 (360)
.++..+ .+++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 356789999999999999999987 568889998 8888877653 579999999988 55533 99999
Q ss_pred c-cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcC
Q 018145 262 K-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 262 ~-~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 340 (360)
. .++|++++++...+|+++++.|+|||++++..+.. ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888899999999999999999865321 1146889999999999
Q ss_pred CceeeEEec
Q 018145 341 FKGINFASC 349 (360)
Q Consensus 341 f~~~~~~~~ 349 (360)
|+++++...
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999888644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=138.94 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=110.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCCC--cEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~~--D~i 259 (360)
.+...++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4455554 446789999999999999999998654 8899998 8888877653 679999999987 65543 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC--CC--------CCchhh-hhhhhhhH-----HHhhhcCC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE--IP--------EVSSAA-RETSLLDV-----LLMTRDGG 323 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~--~~--------~~~~~~-~~~~~~~~-----~~~~~~~~ 323 (360)
++..++|++++ ...+|++++++|||||++++..+.... .. ...... .....+.. ........
T Consensus 113 ~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 99999999864 578999999999999999997543210 00 000000 00000000 00000001
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
...++.++|.++|+++||+++++....
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 112499999999999999999998553
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-16 Score=132.29 Aligned_cols=137 Identities=22% Similarity=0.180 Sum_probs=102.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhHH
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDHC 273 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~~ 273 (360)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.. |+|++.+++|++++ .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~ 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD--P 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--H
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--H
Confidence 689999999999999988765 78887 8888887765 79999999987 55543 99999999999874 4
Q ss_pred HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 274 LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 274 ~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..+|++++++|+|||++++.++.... .............. .......++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcc-hhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 68999999999999999998864322 11100000000000 011234569999999999999999988755
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=134.96 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=103.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vl 265 (360)
..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 568889998 7888776542 689999999987 55543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG---GGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 342 (360)
|++++ ...+|++++++|||||++++. ...+. ..........+..+....... ....++.++|.++|+++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99874 468999999999999999998 22211 011000111111111111010 11245788999999999999
Q ss_pred eeeEE
Q 018145 343 GINFA 347 (360)
Q Consensus 343 ~~~~~ 347 (360)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 77653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=138.32 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=111.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C-CCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~-~~~~ 256 (360)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + .+..
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 4555554 23679999999999999999988 668999998 8888877653 579999999987 3 3433
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-------cCCCccC
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-------DGGGRER 327 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 327 (360)
|+|++..++||+++. ..+|++++++|||||++++.++...... ................ ......+
T Consensus 136 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (285)
T 4htf_A 136 PVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPR 210 (285)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCB
T ss_pred CceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCC
Confidence 999999999999854 6899999999999999999887543210 0000000001110000 0122456
Q ss_pred CHHHHHHHHHHcCCceeeEEecC
Q 018145 328 TKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+.++|.++|+++||+++++....
T Consensus 211 ~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 211 DPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEES
T ss_pred CHHHHHHHHHHCCCceeeeeeEE
Confidence 89999999999999999887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=135.16 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=111.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecc-cccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh~ 267 (360)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 467999998 8888877653 279999999987 55544 9999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEEEeeecCCC----CCCch---hhhhh-hh----------hhHHHhhhcC------
Q 018145 268 WD-DDHCLRILKNCYKAVPGNGKVIVMNSIVPEI----PEVSS---AARET-SL----------LDVLLMTRDG------ 322 (360)
Q Consensus 268 ~~-~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~----~~~~~---~~~~~-~~----------~~~~~~~~~~------ 322 (360)
++ +++...+|++++++|||||++++..+..... +.... ..... .+ ..+.+.....
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 84 3678899999999999999999844321100 00000 00000 00 0000000000
Q ss_pred ----CCccCCHHHHHHHHHHcCCceeeEEec--------CCceeEEEEeC
Q 018145 323 ----GGRERTKKEYTELAIAAGFKGINFASC--------VCNLYIMEFFK 360 (360)
Q Consensus 323 ----~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k 360 (360)
..+.++.++|.++|+++||+++++... .+...+++++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 123469999999999999999999754 13444666665
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=129.47 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=101.6
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEec
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMK 262 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~ 262 (360)
..++..+....++.+|||||||+|.++..+. .+++++|+... +++++.+|+.+ +.+.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455555434566899999999999988773 57888887222 57899999988 56543 999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.++|+ + +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 3 457899999999999999999875321 11788999999999999
Q ss_pred eeeEEecCCceeEEEEeC
Q 018145 343 GINFASCVCNLYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~~~vi~~~k 360 (360)
+++.........+++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666777654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=141.57 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=104.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------------------------ 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 239 (360)
++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999999 8888776542
Q ss_pred ----------------------------CCcEEEecCCCCCC------CC-C-cEEEeccccccC----ChhHHHHHHHH
Q 018145 240 ----------------------------AGVEHVGGNMFESV------PE-G-DAILMKWILHCW----DDDHCLRILKN 279 (360)
Q Consensus 240 ----------------------------~~v~~~~~d~~~~~------~~-~-D~i~~~~vlh~~----~~~~~~~~L~~ 279 (360)
.+|+|+.+|+.... +. . |+|++..+++|+ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 22 3 999999999665 67788899999
Q ss_pred HHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH--cCCceeeEEec
Q 018145 280 CYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA--AGFKGINFASC 349 (360)
Q Consensus 280 i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 349 (360)
++++|||||+|++....+......... ........ .......+++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~--~~~~~~~~------~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTL--TETIYKNY------YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTS--CHHHHHHH------HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcc--cHHHHhhh------hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999999854322110000000 00011100 1112346889999999 99998888765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=127.89 Aligned_cols=141 Identities=11% Similarity=0.124 Sum_probs=109.4
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-cE
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-D~ 258 (360)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+
T Consensus 24 l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~ 100 (199)
T 2xvm_A 24 VLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDF 100 (199)
T ss_dssp HHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEE
T ss_pred HHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceE
Confidence 344444 445679999999999999999987 568999998 8888877642 379999999987 55434 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++|++++++...+|++++++|||||++++++...+...... ......++.+++.++|++
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhcC
Confidence 9999999999988889999999999999999999887664421100 012234578899999986
Q ss_pred cCCceeeEEec
Q 018145 339 AGFKGINFASC 349 (360)
Q Consensus 339 aGf~~~~~~~~ 349 (360)
|++++....
T Consensus 165 --f~~~~~~~~ 173 (199)
T 2xvm_A 165 --WERVKYNED 173 (199)
T ss_dssp --SEEEEEECC
T ss_pred --CeEEEeccc
Confidence 998887543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=132.05 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecc-ccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKW-ILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~-vlh 266 (360)
++..+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999887 68999998 8888877653 479999999987 55544 9999986 999
Q ss_pred cC-ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CW-DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~-~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+ +.++...+|++++++|||||++++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98 45677899999999999999999743
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=135.54 Aligned_cols=146 Identities=12% Similarity=0.053 Sum_probs=107.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC-------CcEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE-------GDAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~-------~D~i~~~ 262 (360)
..++.+|||||||+|.++..+++.++ +++++|+ +.+++.++++ .+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999988 6788887 8888877543 479999999988 3321 4999999
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhh-------hhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET-------SLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
.++|++++++...+|++++++|||||++++.+...+.. ....... ......+.. ......++.+++.++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI---DFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELY 207 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH---HHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc---HHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHH
Confidence 99999998888999999999999999999999865421 0000000 000000000 001123589999999
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
| +||+++....
T Consensus 208 ~--aGf~~~~~~~ 218 (245)
T 3ggd_A 208 F--PDFEILSQGE 218 (245)
T ss_dssp C--TTEEEEEEEC
T ss_pred h--CCCEEEeccc
Confidence 9 9999887643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-16 Score=135.60 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=109.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-----CC-C-CcE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-----VP-E-GDA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-----~~-~-~D~ 258 (360)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+. .+ . .|+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4445454 345689999999999999999988 568999998 88999888778888998887652 22 2 299
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc-----CCCccCCHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD-----GGGRERTKKEYT 333 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~ 333 (360)
|++..++| .+ +...+|++++++|||||++++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 44 44689999999999999999998765432211000 000000000000 011345899999
Q ss_pred HHHHHcCCceeeEEe
Q 018145 334 ELAIAAGFKGINFAS 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999999875
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=133.51 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=85.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
...+|||||||+|.++..+++.+ .+++++|+ +.+++.|++.++|+++.+|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999886 46888888 8999999998999999999988 77765 99999999998763
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.+++++++|+|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4689999999999999999887554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-16 Score=132.67 Aligned_cols=151 Identities=7% Similarity=-0.044 Sum_probs=106.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vl 265 (360)
..++.+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 455789999999999985555544 4678999998 8888877643 579999999988 66543 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
||++.++...++++++++|||||++++.++..++.............+.............++.+++.++|.++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987888999999999999999999999876542111000000000000000000012456899999999999987655
Q ss_pred E
Q 018145 346 F 346 (360)
Q Consensus 346 ~ 346 (360)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=128.07 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=109.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG--DAI 259 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~--D~i 259 (360)
..+++.++ .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +.+.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555554 46789999999999999999988 4 88999998 88888876543 4788999875 33333 999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh---------cCCCccCCHH
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR---------DGGGRERTKK 330 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~t~~ 330 (360)
++..++||+++. ..+|+++++.|+|||++++..+..... . ....+....+ ......++.+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI------S---VLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH------H---HHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH------H---HHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 999999998854 589999999999999999987653220 0 0001000000 0112456899
Q ss_pred HHHHHHHHcCCceeeEEecC
Q 018145 331 EYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~ 350 (360)
+|.++++++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999998887643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-15 Score=134.27 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=101.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC--------CCCcEEEecCCCC-CCCC------C--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS--------YAGVEHVGGNMFE-SVPE------G-- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~~------~-- 256 (360)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 888887754 3689999999988 5444 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhh-cCC--CccCCHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTR-DGG--GRERTKKEYT 333 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~t~~e~~ 333 (360)
|+|++..++|++ +...+|+++++.|||||+|++.+...+.....+. ....+.-..... ..+ ...+..+.+.
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~p~~~~~~ 188 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDLMIEVPYGKQGLGPYWEQPGRSRLR 188 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTHHHHHHHCTTTTGGGSCTTHHHHHH
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHHHHHhccCcccccchhhchhhHHHH
Confidence 999999999998 4568999999999999999996544322111111 111111111000 001 1113566789
Q ss_pred HHHHHcCCc
Q 018145 334 ELAIAAGFK 342 (360)
Q Consensus 334 ~ll~~aGf~ 342 (360)
++++++||.
T Consensus 189 ~~l~~~gfp 197 (299)
T 3g5t_A 189 NMLKDSHLD 197 (299)
T ss_dssp TTTTTCCCC
T ss_pred HhhhccCCC
Confidence 999999994
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=134.46 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=96.0
Q ss_pred CCcceEEEEcCCcchHHH----HHHhhCCCCeE--EEecc-hhHHHhCCCC-------CCcEE--EecCCCC-C------
Q 018145 196 QNVERLVDVGGGFGVTLS----MITSKYPQIKA--VNFDL-PHVVQDAPSY-------AGVEH--VGGNMFE-S------ 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~--~~~d~~~-~------ 252 (360)
.++.+|||||||+|.++. .++..+|++++ +++|. +.|++.++++ .++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 456799999999997654 44556688854 99998 8888876532 24444 4555433 2
Q ss_pred CCC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc--CCCccCC
Q 018145 253 VPE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD--GGGRERT 328 (360)
Q Consensus 253 ~~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t 328 (360)
++. . |+|++++++||+++. .++|++++++|||||++++.+..... ... ..+... ..... .....++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~--~~~~~~-~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS-----GWD--KLWKKY-GSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS-----HHH--HHHHHH-GGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc-----cHH--HHHHHH-HHhccCCCcccCCC
Confidence 223 2 999999999999854 67899999999999999999754211 111 111111 10000 0124568
Q ss_pred HHHHHHHHHHcCCceeeEE
Q 018145 329 KKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~ 347 (360)
.++|.++|+++||+.+...
T Consensus 201 ~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 9999999999999987643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-15 Score=128.89 Aligned_cols=132 Identities=10% Similarity=-0.021 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------------------CCCcEEEecCCCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMFE 251 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~d~~~ 251 (360)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999987 458999998 888887632 1479999999998
Q ss_pred -CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccC
Q 018145 252 -SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRER 327 (360)
Q Consensus 252 -~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (360)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+... . .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~-------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------H-------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------C-------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------C-------CCCCCCC
Confidence 543 33 999999999999988888999999999999999987765543210 0 0011125
Q ss_pred CHHHHHHHHHHcCCceeeEEe
Q 018145 328 TKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 328 t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+.+++.++|++ +|+++.+..
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 88999999987 599877654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-15 Score=132.39 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=104.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-----------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A----------------------------- 240 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----------------------------- 240 (360)
..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. +
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 35678999999999999998888765 57899998 7888776432 1
Q ss_pred --Cc-EEEecCCCC-CC-CC---C--cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 241 --GV-EHVGGNMFE-SV-PE---G--DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 241 --~v-~~~~~d~~~-~~-~~---~--D~i~~~~vlh~~~~--~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
++ ++..+|+.+ .. +. . |+|++..++|++++ ++...+|++++++|||||+|++.+...... .
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E--
Confidence 17 899999987 22 33 3 99999999995443 367899999999999999999998543210 0
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
. ..+ ........+.++|.++|+++||+++++...+
T Consensus 206 -~-~~~-----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -M-IGE-----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -E-ETT-----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -E-cCC-----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0 000 0001234588999999999999999887654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=123.90 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=102.5
Q ss_pred CCcceEEEEcCCc--chHHHHH-HhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---C--C---CC-
Q 018145 196 QNVERLVDVGGGF--GVTLSMI-TSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V--P---EG- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~--~---~~- 256 (360)
.+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.|+++ .+++|+.+|+.+. + + ..
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 4568999999997 3344444 45679999999999 9999998753 3699999999872 1 1 11
Q ss_pred c-----EEEeccccccCChhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHH
Q 018145 257 D-----AILMKWILHCWDDDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKK 330 (360)
Q Consensus 257 D-----~i~~~~vlh~~~~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 330 (360)
| +|+++.+|||+++++ ...+|++++++|+|||+|++.+.+.+..+ . ........+... ......|+.+
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~---~~~~~~~~~~~~-g~p~~~rs~~ 230 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--Q---EVGRVAREYAAR-NMPMRLRTHA 230 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--H---HHHHHHHHHHHT-TCCCCCCCHH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--H---HHHHHHHHHHhc-CCCCccCCHH
Confidence 4 688999999999865 57899999999999999999998754321 0 111122222211 1134568999
Q ss_pred HHHHHHHHcCCceee
Q 018145 331 EYTELAIAAGFKGIN 345 (360)
Q Consensus 331 e~~~ll~~aGf~~~~ 345 (360)
++.++|. ||++++
T Consensus 231 ei~~~f~--Glelve 243 (277)
T 3giw_A 231 EAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTTT--TSEECT
T ss_pred HHHHHhC--CCcccC
Confidence 9999995 998654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=137.56 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=86.5
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC-C---
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE-S--- 252 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~-~--- 252 (360)
+...++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.++++ .++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 334343 4567899999999999999999984 48899998 8888877531 468899999887 4
Q ss_pred CCCC--cEEEec-cccccCCh-----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 253 VPEG--DAILMK-WILHCWDD-----DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 253 ~~~~--D~i~~~-~vlh~~~~-----~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
++.. |+|++. +++||+++ ++..++|++++++|||||++++..+.
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4443 999998 89999987 66889999999999999999987653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-15 Score=134.60 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=98.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------------------- 239 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 239 (360)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 4567899999999998776555442 236889998 8888866431
Q ss_pred -CCcE-EEecCCCCC--CC---C--CcEEEeccccccCC--hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 240 -AGVE-HVGGNMFES--VP---E--GDAILMKWILHCWD--DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 240 -~~v~-~~~~d~~~~--~~---~--~D~i~~~~vlh~~~--~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
.++. ++.+|+.+. ++ . .|+|+++.+||+.. .++...+|++++++|||||+|++.+...... .
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c--
Confidence 0133 889999873 21 2 39999999999853 2567789999999999999999997643210 0
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. .. ........++.++|.++|+++||+++++...
T Consensus 205 -~--~g----~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 -M--VG----KREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -E--ET----TEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -e--eC----CeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 00 0000122358999999999999999888754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=120.22 Aligned_cols=106 Identities=19% Similarity=0.328 Sum_probs=84.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3444443 355689999999999999999987 568999998 8888877643 369999999987 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 259 ILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 259 i~~~-~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|++. ..+++++.++...+|++++++|||||++++..+
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 9986 566777777889999999999999999987543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=129.18 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=108.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CC-CCC--cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PEG--DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~-~~~--D~i~~~ 262 (360)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +. +.. |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998776 4568999998 8888877643 358999999988 55 333 999999
Q ss_pred ccccc--CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC--------CCc----------hhhh-hhhhhhHHHhhhc
Q 018145 263 WILHC--WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP--------EVS----------SAAR-ETSLLDVLLMTRD 321 (360)
Q Consensus 263 ~vlh~--~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~--------~~~----------~~~~-~~~~~~~~~~~~~ 321 (360)
.++|+ .+.++...+|++++++|||||++++..+...... ... .... ....+.+......
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 5667788999999999999999999876432100 000 0000 0000000000000
Q ss_pred --CCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 322 --GGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 322 --~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.....++.++|.++++++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0123468899999999999999988754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=137.84 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=108.7
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC------CCC-C
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE------SVP-E 255 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~------~~~-~ 255 (360)
....+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++......+.. +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666665 567789999999999999999987 458999998 8888888765 34443332221 122 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
.|+|++.+++||++ +...+|++++++|||||++++..+..... . ....+... ...+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~----~~~~~~~~-~~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDI-----V----AKTSFDQI-FDEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHH-----H----HHTCGGGC-STTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHh-----h----hhcchhhh-hhhhhhcCCHHHHHH
Confidence 39999999999998 45789999999999999999976543210 0 00000000 012445679999999
Q ss_pred HHHHcCCceeeEEecC
Q 018145 335 LAIAAGFKGINFASCV 350 (360)
Q Consensus 335 ll~~aGf~~~~~~~~~ 350 (360)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999998865
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=127.71 Aligned_cols=140 Identities=10% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999988 558899998 8888877643 279999999988 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHH
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 338 (360)
|++..++||++++....+|+++++.|||||+++++......+...+ ......++.+++.+++++
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988889999999999999999998876654321110 012234577888888865
Q ss_pred cCCceeeEE
Q 018145 339 AGFKGINFA 347 (360)
Q Consensus 339 aGf~~~~~~ 347 (360)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-15 Score=127.85 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=84.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCCCCCC-C-cEEEecccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVPE-G-DAILMKWILHC 267 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~~-~-D~i~~~~vlh~ 267 (360)
..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999985 47888888 778877654 25799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 268 WDD-DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 268 ~~~-~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+++ +...++|++++++|||||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 55678999999999999999997763
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=120.54 Aligned_cols=133 Identities=8% Similarity=0.052 Sum_probs=100.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++. .++++..+|+.+ +.+.. |+|++. +.+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999887 568999998 8888877653 379999999988 55543 999985 345
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
++.++...+|++++++|||||++++.++...... . .... . ......++.+++.++|+ ||+++++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~---~-~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGG---P-KDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCC---S-SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCC---C-CcceeecCHHHHHHHhc--CceEEEEE
Confidence 5777888999999999999999999987643210 0 0000 0 00123569999999999 99998876
Q ss_pred ec
Q 018145 348 SC 349 (360)
Q Consensus 348 ~~ 349 (360)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=118.27 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=100.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC----CCCCCcEEEecCCCC-----CCCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFE-----SVPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~-----~~~~~-D~i~~~~ 263 (360)
..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+ +..+++.++.+|+.+ +.+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988889999998 7777543 344789999999976 12233 9998
Q ss_pred ccccCChh-HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 264 ILHCWDDD-HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 264 vlh~~~~~-~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
|++++. ....+++++++.|||||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~-------~~-----------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD-------PK-----------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC-------HH-----------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC-------HH-----------HhhHHHHH-HHHHCCCE
Confidence 444433 3467799999999999999997 22211111000 00 01236677 89999999
Q ss_pred eeeEEecCCc---eeEEEEeC
Q 018145 343 GINFASCVCN---LYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~k 360 (360)
.+++.+...+ +.++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9999887654 66666654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=111.67 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=96.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCC--cEEEeccccccCChh-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEG--DAILMKWILHCWDDD- 271 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~--D~i~~~~vlh~~~~~- 271 (360)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.. |+|+++..+|+.++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345799999999999999999987 8899998 888887 467999999999865533 999999988865543
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 272 ------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 272 ------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3467899999999 999999987421 1356788999999999888
Q ss_pred EEecC
Q 018145 346 FASCV 350 (360)
Q Consensus 346 ~~~~~ 350 (360)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 87654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-15 Score=131.92 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=97.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------------------C---------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------------A--------------- 240 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------------~--------------- 240 (360)
++.+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445668999999 8888765431 0
Q ss_pred -CcEEEecCCCC--C-----CCC--CcEEEeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 241 -GVEHVGGNMFE--S-----VPE--GDAILMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 241 -~v~~~~~d~~~--~-----~~~--~D~i~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
.++++.+|+.+ + ++. .|+|++..+||+++++ +...+|++++++|||||+|++.+..... ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~-- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY-- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE--
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE--
Confidence 14566678876 2 223 3999999999996533 6789999999999999999998644321 00
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
.. .+ .......++.++|.++|+++||+++++...
T Consensus 223 -~~-~~-----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 223 -LA-GE-----ARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -EE-TT-----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -Ec-CC-----eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 00 000123458999999999999999887643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=115.14 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=98.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC---CC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---~~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3445555 66778999999999999999999999999999999 8888887653 579999999977433 34
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++...++ +...+++++++.|||||++++...... +.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHH
Confidence 9999988776 346799999999999999999664211 245677888
Q ss_pred HHcCCceeeE
Q 018145 337 IAAGFKGINF 346 (360)
Q Consensus 337 ~~aGf~~~~~ 346 (360)
+++|| .+++
T Consensus 156 ~~~g~-~~~~ 164 (204)
T 3e05_A 156 EDHGY-MVEV 164 (204)
T ss_dssp HHTTC-EEEE
T ss_pred HHCCC-ceeE
Confidence 99998 4433
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-14 Score=118.86 Aligned_cols=136 Identities=17% Similarity=0.104 Sum_probs=98.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCC-eEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQI-KAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAIL 260 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~ 260 (360)
.++..+. .++.+|||||||+|.++..+ +. +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 36789999999999998877 44 8899998 8888877654 689999999988 66553 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh--hcCCCccCCHHHHHHHHHH
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT--RDGGGRERTKKEYTELAIA 338 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~ 338 (360)
+.+++||+++ ..++|++++++|||||++++.++.... .... ......... .......++.+++.++|+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~l~- 170 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALS-----PWAA--LYRRLGEKGVLPWAQARFLAREDLKALLG- 170 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTS-----HHHH--HHHHHHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcC-----cHHH--HHHHHhhccCccccccccCCHHHHHHHhc-
Confidence 9999999874 468999999999999999998875432 1110 000000000 001234579999999999
Q ss_pred cC
Q 018145 339 AG 340 (360)
Q Consensus 339 aG 340 (360)
|
T Consensus 171 -G 171 (211)
T 2gs9_A 171 -P 171 (211)
T ss_dssp -S
T ss_pred -C
Confidence 7
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=120.59 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=108.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC-C-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-G- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-~- 256 (360)
..+++.++ .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34444443 3567999999999999999999999999999999 8888877653 4799999999885533 3
Q ss_pred cEEEec-------------cccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh
Q 018145 257 DAILMK-------------WILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313 (360)
Q Consensus 257 D~i~~~-------------~vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~ 313 (360)
|+|+++ .++++.|. +....+++.+.+.|||||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 999997 34444331 3457899999999999999998521
Q ss_pred hHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEEEeC
Q 018145 314 DVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIMEFFK 360 (360)
Q Consensus 314 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 360 (360)
..+.+++.++++++||+.+++.... +...++.++|
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0135678999999999988887654 4455666553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=118.44 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=96.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh----CCC------CCCcEEEecCCCC-CCCCC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD----APS------YAGVEHVGGNMFE-SVPEG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~d~~~-~~~~~-D~i~~ 261 (360)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +.+.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999999 776664 222 2579999999988 55543 66653
Q ss_pred cc---ccc--cCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 262 KW---ILH--CWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 262 ~~---vlh--~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
.. .+| ++++. ..+|++++++|||||++++........+.. ..... .......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE-----HPEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT-----CCCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc-----CCccchHHHHHHHHHHH
Confidence 22 221 33322 678999999999999999954322111000 00000 00011112345588899
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998886654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=117.71 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=91.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhC---CCC------CCcEEEecCCCCC-CCCCcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDA---PSY------AGVEHVGGNMFES-VPEGDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~d~~~~-~~~~D~i~~~~ 263 (360)
.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.| +++ ++++++.+|+.+- ....|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4568999999999999999999899999999998 3454444 543 5799999998763 21125554444
Q ss_pred ccccCChh------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 264 ILHCWDDD------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~~~------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+.+.|+.. +...+|++++++|||||++++........ .. ...... ..... .......+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~-----~~~~~~--~~~~~-~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EE-----AEIKKR--GLPLL-SKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC----------------------C-CHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hh-----chhhhc--CCCCC-ChhhcchHHHHHHHH
Confidence 43333321 11468999999999999999955433321 00 000000 00000 000111235999999
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
++||++.++...+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=117.71 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++ .+..+++++|+ +.+++.++++ .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999776 56779999998 8888877653 24999999998854444 99999887764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
...+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999765421 35668899999999999988
Q ss_pred ecCCceeEEEEe
Q 018145 348 SCVCNLYIMEFF 359 (360)
Q Consensus 348 ~~~~~~~vi~~~ 359 (360)
...+...++.-+
T Consensus 184 ~~~~w~~~~~~~ 195 (205)
T 3grz_A 184 RAGRWIGLAISR 195 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEec
Confidence 876666666543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=127.84 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------------CCCcEEEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~ 249 (360)
..+++.+. ..++.+|||||||+|.++..++...+..+++++|+ +.+++.|++ ..+|+|+.+|+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 45566565 67889999999999999999999887777999999 666666543 25799999999
Q ss_pred CC-CCC----CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC
Q 018145 250 FE-SVP----EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP 301 (360)
Q Consensus 250 ~~-~~~----~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~ 301 (360)
.+ +++ ..|+|+++++++ + ++....|+++++.|||||+|++.|.+.+.+.
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 98 553 359999987764 2 4567788999999999999999999887653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=113.11 Aligned_cols=140 Identities=14% Similarity=0.238 Sum_probs=107.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C--CcEEEecCCCCCCCC-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESVPE-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~~~~-~ 256 (360)
.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. . +++++.+|+.+..+. .
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4455555 556789999999999999999988 778999998 8888776542 3 499999999885443 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++...+|+ ..+....+++++++.|+|||++++..+... ...++.+.
T Consensus 120 ~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~ 169 (194)
T 1dus_A 120 YNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAKY 169 (194)
T ss_dssp EEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHHH
T ss_pred ceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHHH
Confidence 99999988875 445678999999999999999999876321 01245666
Q ss_pred HHHcCCceeeEEecCCceeEEEEeC
Q 018145 336 AIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 336 l~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
+++. |..+++.....+..++.++|
T Consensus 170 l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 170 MKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHH-hcceEEEecCCcEEEEEEee
Confidence 7776 66777777777777877765
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-14 Score=125.18 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=91.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC---CCCCC--cEEEe---
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM--- 261 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~---~~~~~--D~i~~--- 261 (360)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++. .+++++.+|+.. +.+.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999999988764 6788888 8999988653 468888888754 34443 77754
Q ss_pred --ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 262 --KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 262 --~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
...++|++ +...++++++|+|||||+|++.+...... .....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 45555544 56789999999999999998865332110 0000000 00011245567788899
Q ss_pred CCceeeE
Q 018145 340 GFKGINF 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||+...+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9997554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=116.41 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhC----CCCCCcEEEecCCCCC--CC---CC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDA----PSYAGVEHVGGNMFES--VP---EG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~~--~~---~~-D~i~~~ 262 (360)
++++.+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+ ++.+++..+.+|..++ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678999999999999999999987 48899999998 7777654 3457899999998762 12 22 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
...| ++...+++++++.|||||+++|.......+ .. . .... ..++-.+.|+++||+
T Consensus 155 ~~~~----~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~~-~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 VAQP----EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPSE-VYKREIKTLMDGGLE 210 (233)
T ss_dssp CCCT----THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCCH-HHHHHHHHHHHTTCC
T ss_pred ccCC----hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChHH-HHHHHHHHHHHCCCE
Confidence 3222 245678999999999999999976433211 00 0 0000 122345678899999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
.++.+...+
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 999988764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-14 Score=119.64 Aligned_cols=144 Identities=14% Similarity=0.051 Sum_probs=91.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC-----CcEEEecCCCCCCC-----
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-----GVEHVGGNMFESVP----- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----~v~~~~~d~~~~~~----- 254 (360)
..+++.++...++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++.. +++++.+|+.++.+
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34444444225678999999999999999999999999999999 88999887641 58888888877433
Q ss_pred -C-CcEEEecccccc------CChhHH------------------HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 255 -E-GDAILMKWILHC------WDDDHC------------------LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 255 -~-~D~i~~~~vlh~------~~~~~~------------------~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
. .|+|+++..++. ++++.. ..++++++++|||||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 2 399999644432 222211 678999999999999966655321
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHH--HcCCceeeEEecCC-ceeEEEE
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAI--AAGFKGINFASCVC-NLYIMEF 358 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~-~~~vi~~ 358 (360)
...+++.++++ +.||..+++..... ...++..
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 02455777888 89999888877654 3344443
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=129.74 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=89.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC------------CCCcEEEecCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------------YAGVEHVGGNMFE- 251 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~- 251 (360)
.+++.+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+
T Consensus 712 ~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL 790 (950)
T 3htx_A 712 YALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF 790 (950)
T ss_dssp HHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred HHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence 3444444 3467899999999999999999998 5679999999 888887754 2569999999988
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 252 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 252 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+.+.+ |+|++..++||++++....+++++++.|||| .+++..+..
T Consensus 791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 55433 9999999999999988888999999999999 777776543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=118.10 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=80.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC---CcEEEecCCCC----CCCC-C
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA---GVEHVGGNMFE----SVPE-G 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---~v~~~~~d~~~----~~~~-~ 256 (360)
..++..++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++. .+.....++.. ..+. .
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 45556555 667889999999999999999987 457888998 88998876531 12222222211 1122 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++||++.++...++++++++| |||++++...
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999999888899999999999 9999998754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=110.17 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhH----HHhCCCCCCcEEEecCCCCC-----CCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~~ 263 (360)
.+++.+|||||||+|.++..+++..++.+++++|+ +.+ .+.++...++.++.+|+.++ .++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 654 45555456799999998762 2333 999986
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHH----HHHHHHc
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEY----TELAIAA 339 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~----~~ll~~a 339 (360)
+.+ .++...++++++++|||||+|++.-...+. + . ..+.+++ .+.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 332 234456699999999999999998432110 0 0 0112222 1237888
Q ss_pred CCceeeEEecCC---ceeEEEEeC
Q 018145 340 GFKGINFASCVC---NLYIMEFFK 360 (360)
Q Consensus 340 Gf~~~~~~~~~~---~~~vi~~~k 360 (360)
|++++.....+ .+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 99999988743 556776653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=120.16 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC---CCCCC--cEEEe-cc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAILM-KW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~---~~~~~--D~i~~-~~ 263 (360)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.|+++ .+++++.+|+.+ +++++ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966543 48899998 8888877642 468999999865 35443 99998 55
Q ss_pred c--cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 264 I--LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 264 v--lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. .+++.......++++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33444445567899999999999999998754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-13 Score=110.34 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCCC---C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESVP---E 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~~---~ 255 (360)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. + ++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3444444 56778999999999999999999999999999999 8888877642 3 68 88898876433 2
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|++..++|+ ..+++++++.|||||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 399999999987 4689999999999999998775
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-13 Score=119.86 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=80.3
Q ss_pred CcceEEEEcCCcch----HHHHHHhhCC----CCeEEEecc-hhHHHhCCCC----------------------------
Q 018145 197 NVERLVDVGGGFGV----TLSMITSKYP----QIKAVNFDL-PHVVQDAPSY---------------------------- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 239 (360)
++.+|+|+|||+|. ++..+++.+| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666677655 468899998 8888877542
Q ss_pred ---------CCcEEEecCCCC-CCC--CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 240 ---------AGVEHVGGNMFE-SVP--EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 240 ---------~~v~~~~~d~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+|+|..+|+.+ +++ .. |+|+|.+++++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 455 23 999999999999988889999999999999999988
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-13 Score=114.48 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ +++.. |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998664 7888888 7787766542 579999999988 66543 99999998877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WD-------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~-------------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+. ..+...+|++++++|||||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 54 4466899999999999999999988644
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.2e-12 Score=108.41 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=98.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHH----hCCCCCCcEEEecCCCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQ----DAPSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~ 262 (360)
..++.+|||+|||+|.++..+++.. |+.+++++|. +.+++ .++..++++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 6688999998 65444 444447899999999872 2333 999975
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.. .+.....+++++++.|||||++++. .........+ .......+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 1233445699999999999999998 2221110000 0001135667777 777 99
Q ss_pred eeeEEecCCc---eeEEEEeC
Q 018145 343 GINFASCVCN---LYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~k 360 (360)
.++.....++ +.++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9998887654 66776654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-12 Score=107.69 Aligned_cols=141 Identities=17% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhH----HHhCCCCCCcEEEecCCCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHV----VQDAPSYAGVEHVGGNMFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~d~~~~-----~~~~-D~i~~~ 262 (360)
++++.+|||+|||+|.++..+++.. |..+++++|+ +.+ ++.++++.++.++.+|+..+ ..+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999998874 6789999998 655 34454457899999999762 1223 999887
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
... + +....+++.+++.|||||+|++....... +. +..... ..++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~-----t~~~~e-~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DV-----TKDPKE-IYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------cc-----CCCHHH-HHHHHHHHHHHCCCE
Confidence 543 2 23334556677799999999998432111 10 001111 223345677889999
Q ss_pred eeeEEecCCc---eeEEEEe
Q 018145 343 GINFASCVCN---LYIMEFF 359 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~ 359 (360)
+++.....++ +.++.++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEE
Confidence 9999988543 6666554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=111.39 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC--CCCCC--cEEEecc
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE--SVPEG--DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~--~~~~~--D~i~~~~ 263 (360)
.+++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.. +.+.. |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999986 778999998 8888877643 269999999643 44433 9999987
Q ss_pred ccccCChh-----------------HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc
Q 018145 264 ILHCWDDD-----------------HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 326 (360)
Q Consensus 264 vlh~~~~~-----------------~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (360)
.+++.++. ....+++.+.+.|||||++++..+...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 76654432 136899999999999999999643210
Q ss_pred CCHHHHHHHHHHcCCceeeEEecCCc--eeEEEEe
Q 018145 327 RTKKEYTELAIAAGFKGINFASCVCN--LYIMEFF 359 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~~~--~~vi~~~ 359 (360)
...+++.+++++.||++..+....+. ..++.+.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 02456788999999987666544432 3355544
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=113.10 Aligned_cols=141 Identities=10% Similarity=0.018 Sum_probs=96.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hh----HHHhCCCCCCcEEEecCCCCC--CC---CC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PH----VVQDAPSYAGVEHVGGNMFES--VP---EG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~--~~---~~-D~i~~~ 262 (360)
+.++.+|||||||+|.++..+++.+ |..+++++|+ +. +++.++...+++++.+|+.+. .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 54 445555457899999999872 22 23 999985
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.. ..+....+++++++.|||||++++.-......... ... .+...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAE---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHH---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHH---------HHHHHH-HHHHHHCCCc
Confidence 44 23345667999999999999999943211000000 000 000123 5889999999
Q ss_pred eeeEEecCCc---eeEEEEe
Q 018145 343 GINFASCVCN---LYIMEFF 359 (360)
Q Consensus 343 ~~~~~~~~~~---~~vi~~~ 359 (360)
++++.....+ +.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 9997766533 5555543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-12 Score=109.51 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=78.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999998 8888877642 579999999987 3 4443 99998865
Q ss_pred cccCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDD------HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~------~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.++.... ....+++.++++|+|||++++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4422211 12478999999999999999854
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=109.04 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--CCC-CC-cEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVP-EG-DAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~~~-~~-D~i~~~- 262 (360)
.+++.+|||||||+|.++..+++. ..+++++|+ +.+++.|+++ ++++++..|+.+ ..+ .. |+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 788999998 8888887653 579999977655 133 33 999876
Q ss_pred cccccC------ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 263 WILHCW------DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 263 ~vlh~~------~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..+++- ..+....+|+++++.|||||++++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 333320 2245668899999999999999998754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-13 Score=114.62 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=87.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC--CCC-CC--cEEEeccccccC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE--SVP-EG--DAILMKWILHCW 268 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~--~~~-~~--D~i~~~~vlh~~ 268 (360)
.++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+ +++ .+ |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999998 568999998 8888887653 689999999965 444 33 9999871
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
+...+|++++++|||||+++... ...+.+++.++++++||+.+++..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~------------------------------~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYVG------------------------------PRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEEE------------------------------SSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEeC------------------------------CcCCHHHHHHHHHHCCCeEEEEEe
Confidence 23467999999999999999100 011345688888999998877654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-12 Score=106.37 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=92.7
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCC---CCC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV---PEG 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~---~~~ 256 (360)
++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. + +++++.+|+.+.. +..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344444 567789999999999999999988 778999998 8888877643 3 7999999998732 234
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
|+|++...+ +.. +++.+++.|||||++++...... +..++.+++
T Consensus 124 D~v~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~~~~-----------------------------~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG------SQA-LYDRLWEWLAPGTRIVANAVTLE-----------------------------SETLLTQLH 167 (204)
T ss_dssp SEEEECSCC------CHH-HHHHHHHHSCTTCEEEEEECSHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCcc------cHH-HHHHHHHhcCCCcEEEEEecCcc-----------------------------cHHHHHHHH
Confidence 999987754 123 89999999999999998664211 234567788
Q ss_pred HHcCCceeeEE
Q 018145 337 IAAGFKGINFA 347 (360)
Q Consensus 337 ~~aGf~~~~~~ 347 (360)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 88898877653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-13 Score=109.17 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=95.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC-CCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~-~~~~-D~i~~~~vlh~ 267 (360)
.++.+|||||||+|.++..++...|+.+++++|+ +.+++.++++ ...++...|.... .+.. |+|++..++|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4578999999999999999999999999999999 8999988753 1123334676653 3333 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+ + +....+.++.++|+|||.++..+.-.=.. + +.+-.......|++.+ ...+.+++..
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfptksl~G-r------------------~~gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFPIKSLSG-K------------------EKGMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEECCCCC---------------------CTTCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeChHHhcC-C------------------CcchhhhHHHHHHHhc-cCcceeeeee
Confidence 9 3 44566779999999999888777211111 0 1122223455676666 4566777776
Q ss_pred ecCCc
Q 018145 348 SCVCN 352 (360)
Q Consensus 348 ~~~~~ 352 (360)
..++.
T Consensus 186 ~~~nE 190 (200)
T 3fzg_A 186 VIGNE 190 (200)
T ss_dssp EETTE
T ss_pred eeCce
Confidence 66544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=117.12 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------------CCcEEEecCCCC-C----CC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------------AGVEHVGGNMFE-S----VP-- 254 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~d~~~-~----~~-- 254 (360)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 35689999999999999998874 5778999998 8888877542 268999999987 4 32
Q ss_pred C-C-cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 255 E-G-DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 255 ~-~-D~i~~~~vlh~~--~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. . |+|++..++|+. +.++...+|++++++|||||++++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999987 3456789999999999999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=112.99 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=97.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---C--CcEEEecCCCCCCCC--CcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GVEHVGGNMFESVPE--GDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~d~~~~~~~--~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ . .+++..+|+.+.++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999888765 8888888 8888877653 1 289999998764433 39999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
....+++.+++.|||||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 456899999999999999999765321 25678899999999999987
Q ss_pred ecCCceeEEEEeC
Q 018145 348 SCVCNLYIMEFFK 360 (360)
Q Consensus 348 ~~~~~~~vi~~~k 360 (360)
...+-. .+.++|
T Consensus 243 ~~~~W~-~l~~~k 254 (254)
T 2nxc_A 243 AEGEWV-LLAYGR 254 (254)
T ss_dssp EETTEE-EEEEEC
T ss_pred ccCCeE-EEEEEC
Confidence 754432 344443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-12 Score=113.59 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=79.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCCcEEEeccccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEGDAILMKWILH 266 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~D~i~~~~vlh 266 (360)
.+++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|+++ ++|+++.+|+.+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988777677778999999999 9999988753 689999999987 42223999986542
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ +..++++++++.|||||+|++.+.
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 456899999999999999999763
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=106.87 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC---CC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP---EG 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~---~~ 256 (360)
++..+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++..+|+.+..+ ..
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 5667899999999999999999987 78899998 7788776542 579999999876333 23
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++++ ...+++.+++.|+|||++++...
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99999988764 36789999999999999998764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-12 Score=116.77 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=93.3
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. ++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78899999999 8787766432 47999999998865543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++ ++++. ..+|+++.++|||||++++.++... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 34433 4789999999999999999874210 12345667
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7778888777765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=117.68 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=99.4
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C--------CcEEEecCCCC---------CCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A--------GVEHVGGNMFE---------SVP 254 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~d~~~---------~~~ 254 (360)
++.+|||||||+|..+..+++. ...+++++|+ +.+++.|+++ . +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3468999999 8999988753 1 15687888732 233
Q ss_pred CC--cEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC-----------C-chhhhhhhhh----hH
Q 018145 255 EG--DAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE-----------V-SSAARETSLL----DV 315 (360)
Q Consensus 255 ~~--D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~-----------~-~~~~~~~~~~----~~ 315 (360)
.+ |+|++..++|+. ++++...+|++++++|||||++++..+....... . .....+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 4456689999999999999999987763221000 0 0000000000 00
Q ss_pred --HHhhh--cCC--CccCCHHHHHHHHHHcCCceeeEEec
Q 018145 316 --LLMTR--DGG--GRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 316 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
..... ... ....+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 000 12457899999999999999888654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=112.09 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++. ++++++.+|+.+.++..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 667889999999999999999999 78999999999 8888887653 45999999998866543
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHH
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTE 334 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 334 (360)
|+|++. .++. ..+++++.++|+|||++++..+... ...++.+
T Consensus 162 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 999873 3332 4689999999999999999764321 1345667
Q ss_pred HHHHcC--CceeeEEec
Q 018145 335 LAIAAG--FKGINFASC 349 (360)
Q Consensus 335 ll~~aG--f~~~~~~~~ 349 (360)
++++.| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 888888 888877644
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=114.16 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=92.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC----CCC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV----PEG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~----~~~-D~i~~~ 262 (360)
.++.+|||||||+|..+..++...|+.+++++|+ +.+++.+++. .+|+++.+|+.+ +. +.. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999999 8888877642 469999999876 43 233 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.+ . +...+++.+++.|||||++++....... ...+++.+.+++.||+
T Consensus 149 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 2 3568999999999999999986421100 0124567888999999
Q ss_pred eeeEEe
Q 018145 343 GINFAS 348 (360)
Q Consensus 343 ~~~~~~ 348 (360)
++++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=108.95 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C-CC-CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S-VP-EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~-~~-~~-D~i~~ 261 (360)
.+++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6789999999 8888877653 579999999876 2 33 33 99998
Q ss_pred cccccc-------CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 KWILHC-------WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~-------~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
...+.. ...++...+++++.+.|||||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 765511 123355679999999999999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-12 Score=118.19 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=86.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCCCCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~~~~ 256 (360)
.+++.++ ...+.+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++++..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 44558999999999999999999999999999999 8888887653 14888999999866643
Q ss_pred --cEEEecccccc---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 --DAILMKWILHC---WDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 --D~i~~~~vlh~---~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|+++..+|+ .++....++++.+++.|||||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999998885 3344556899999999999999999753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=114.32 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=94.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC-CC--CC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE-SV--PE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~-~~--~~-~-D~i 259 (360)
+++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999878889999998 888877653 2579999999876 21 23 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 260 LMKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 260 ~~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
++....+..++... ..+++.++++|||||++++..... +.+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99777665543332 588999999999999999874211 000 113567889999
Q ss_pred HcCCceeeEEec
Q 018145 338 AAGFKGINFASC 349 (360)
Q Consensus 338 ~aGf~~~~~~~~ 349 (360)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-12 Score=108.38 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=77.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC--cEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG--DAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~--D~i~~~~v 264 (360)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 8888877542 579999999887 3 4543 98887554
Q ss_pred cccCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDH------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~------~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+..... ...+|+.+++.|||||+|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33211110 2578999999999999999865
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-12 Score=105.81 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=84.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CC---CCC--cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SV---PEG--DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~---~~~--D~i~~~~vl 265 (360)
..++.+|||||||. +.+|. +.+++.++++ .++++..+|+.+ +. +.. |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23776 7888877653 359999999987 44 443 999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCC
Q 018145 266 HCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGF 341 (360)
Q Consensus 266 h~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 341 (360)
||+ ++ ...+|++++++|||||++++.++....... ....++.++|.++|+++||
T Consensus 74 ~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLH--SAEILAEIARILRPGGCLFLKEPVETAVDN--------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSCS--------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccC--HHHHHHHHHHHCCCCEEEEEEccccccccc--------------------ccccCCHHHHHHHHHHCCC
Confidence 998 54 368999999999999999997765432100 1123578999999999999
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=119.55 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=88.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCC-cE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEG-DA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~-D~ 258 (360)
..+++.++ ...+.+|||||||+|.++..+++.+|..+++++|. +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34555554 34457999999999999999999999999999998 7888877653 34678999998744444 99
Q ss_pred EEeccccccC---ChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCW---DDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~---~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+++..+|+. ..+....++++++++|||||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 3456789999999999999999998753
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=112.36 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=78.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 468899998 8888877654222388899887 66543 999998877666433
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
...+|++++++|||||++++..+..
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 6789999999999999999987643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=111.33 Aligned_cols=99 Identities=10% Similarity=0.172 Sum_probs=78.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC----CCCC--cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES----VPEG--DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~----~~~~--D~i~~~~ 263 (360)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.++++ .+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 8888776542 5799999998762 4544 9998875
Q ss_pred ccccCChhHH------HHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWDDDHC------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~~------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+...... ..+++.++++|||||+|++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 5443222221 2589999999999999998763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=102.56 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC--CCeEEEecchhHHHhCCCCCCcEEEecCCCC-C-----------
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP--QIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S----------- 252 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~----------- 252 (360)
++.+.+..++++.+|||||||+|.++..+++.+| +.+++++|+..+. ..++++++.+|+.+ +
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 4445444345678999999999999999999998 6899999984431 23679999999987 4
Q ss_pred --------------CCC-C-cEEEeccccccCC----hhH-----HHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 --------------VPE-G-DAILMKWILHCWD----DDH-----CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 --------------~~~-~-D~i~~~~vlh~~~----~~~-----~~~~L~~i~~~LkpgG~lli~e 294 (360)
++. . |+|++...+|+.. +.. ...+|+.++++|||||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877532 111 1248999999999999999854
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=108.67 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=95.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh-CCCCCCcEEEe-cCCCC----CCCC--Cc
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD-APSYAGVEHVG-GNMFE----SVPE--GD 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~v~~~~-~d~~~----~~~~--~D 257 (360)
.++..+....++.+|||||||||.++..+++. +..+++++|+ +.|++. .++.+++.... .|+.. .+|. .|
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCC
Confidence 44455541234679999999999999988886 5568999998 788876 34445654433 23322 1343 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe-eecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN-SIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELA 336 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 336 (360)
+|++..++|++ ..+|..++++|||||+++++. +.+...+ . .........+.. ...+..+++.+++
T Consensus 154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~-~-~~~~~G~vrd~~-------~~~~~~~~v~~~~ 219 (291)
T 3hp7_A 154 FASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR-E-QIGKNGIVRESS-------IHEKVLETVTAFA 219 (291)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG-G-GCC-CCCCCCHH-------HHHHHHHHHHHHH
T ss_pred EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh-h-hcCCCCccCCHH-------HHHHHHHHHHHHH
Confidence 99998888754 468999999999999999862 2111100 0 000000000000 0123578899999
Q ss_pred HHcCCceeeEEecC
Q 018145 337 IAAGFKGINFASCV 350 (360)
Q Consensus 337 ~~aGf~~~~~~~~~ 350 (360)
+++||++..+...+
T Consensus 220 ~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 220 VDYGFSVKGLDFSP 233 (291)
T ss_dssp HHTTEEEEEEEECS
T ss_pred HHCCCEEEEEEECC
Confidence 99999998887664
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-13 Score=119.52 Aligned_cols=145 Identities=8% Similarity=0.005 Sum_probs=95.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC----CCC----CC-cEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE----SVP----EG-DAI 259 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~----~~~----~~-D~i 259 (360)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999998 8888877642 369999999643 344 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc
Q 018145 260 LMKWILHCWDD-------------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 326 (360)
Q Consensus 260 ~~~~vlh~~~~-------------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (360)
+++-.+|.... +....++..++++|||||.+.+++...... ........... ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~--------~~~l~~~g~~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS--------LQLKKRLRWYS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH--------HHHGGGBSCEE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH--------HhcccceEEEE-ECCCCh
Confidence 99866654331 112356788999999999998877543210 00000000000 012333
Q ss_pred CCHHHHHHHHHHcCCceeeEEecC
Q 018145 327 RTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 455889999999999998877654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-12 Score=112.96 Aligned_cols=121 Identities=14% Similarity=0.055 Sum_probs=92.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC----CC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP----EG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~----~~-D~i~~~ 262 (360)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999998 8888877642 469999999877 331 23 999987
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.+- +...+++.+.+.|||||++++....... . ...++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~-------~--------------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE-------E--------------------ELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH-------H--------------------HHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH-------H--------------------HHHHHHHHHHHcCCe
Confidence 542 2357899999999999999986632110 0 122356777888999
Q ss_pred eeeEEec
Q 018145 343 GINFASC 349 (360)
Q Consensus 343 ~~~~~~~ 349 (360)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=107.75 Aligned_cols=124 Identities=9% Similarity=0.109 Sum_probs=92.6
Q ss_pred CC-CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-C--CCC-C-cEEE
Q 018145 195 FQ-NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-S--VPE-G-DAIL 260 (360)
Q Consensus 195 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~--~~~-~-D~i~ 260 (360)
.+ ++.+|||+|||+|.++..+++..+. +++++|+ +.+++.|+++ ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999765 8999998 8888877653 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcC
Q 018145 261 MKWILHCW------------------DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDG 322 (360)
Q Consensus 261 ~~~vlh~~------------------~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (360)
++-.++.. .......+++.+.+.|||||+++++.. ..
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~---------------------- 179 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PE---------------------- 179 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TT----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HH----------------------
Confidence 96444322 113456799999999999999999531 10
Q ss_pred CCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 323 GGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 323 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
...++.+++++.||...++.+.
T Consensus 180 -----~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -----RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -----THHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHHHCCCceEEEEEe
Confidence 2345677888889988776544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=109.42 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=96.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~ 255 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35566565 677889999999999999999998 67899999998 8887776542 579999999987 4664
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 333 (360)
. |+|++. +++. ..+|+++.++|+|||++++.++... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 999972 3432 3689999999999999999875321 123455
Q ss_pred HHHHHcCCceeeEEe
Q 018145 334 ELAIAAGFKGINFAS 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
+.++++||..+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 667778888777654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=100.25 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCC-C--------CCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-S--------VPEG 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~--------~~~~ 256 (360)
.+++.+....++.+|||+|||+|.++..+++.+ |+.+++++|+..+++ ..++++..+|+.+ + .+..
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 344444324567899999999999999999995 778999999843433 2679999999988 4 5543
Q ss_pred --cEEEeccccccCChhH---------HHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 --DAILMKWILHCWDDDH---------CLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~---------~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++...+|+.+... ...+++.+.+.|+|||++++.++.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999988765431 158899999999999999987753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=114.19 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=85.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC-------CC--------CCCcEEEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA-------PS--------YAGVEHVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~d~ 249 (360)
..++..+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+|+++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 34555555 66788999999999999999999888888999998 7766655 32 25789998865
Q ss_pred CC-C--C----CCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC
Q 018145 250 FE-S--V----PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI 300 (360)
Q Consensus 250 ~~-~--~----~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~ 300 (360)
+. + + ...|+|+++++++. ++....|+++.+.|||||+|++.+++.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 43 2 2 12399999877742 466788999999999999999998777654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=103.10 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=99.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC---CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE---GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~---~D~i~~~~v 264 (360)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++. .|+|++.++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4568999999999999999999999999999998 8888877653 4799999999886552 499988765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
- .+-...+|..+.+.|+|+|+|++.-. . ..+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-~------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-N------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-S------------------------------CHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-C------------------------------CHHHHHHHHHHCCCEEE
Confidence 2 34567899999999999999887321 0 24567889999999988
Q ss_pred eEEec--CC-ceeEEEEe
Q 018145 345 NFASC--VC-NLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~~-~~~vi~~~ 359 (360)
+..-. .+ ++-+|.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 76432 33 34466543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=101.09 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC--Cc
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE--GD 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~--~D 257 (360)
.++..+. ..++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.++.+. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55678999999999999999998 7889999998 8888877653 5799999998875443 39
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++..+ + +...+++.+++. |||++++...... +..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999887 2 346789999988 9999999774211 1345678889
Q ss_pred HcCCceeeE
Q 018145 338 AAGFKGINF 346 (360)
Q Consensus 338 ~aGf~~~~~ 346 (360)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999875544
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=103.17 Aligned_cols=129 Identities=13% Similarity=0.025 Sum_probs=100.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C--CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~--~D~i~~~~v 264 (360)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++..+ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4568999999999999999999999889999998 8888887653 579999999998443 2 399988765
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
. .+-...+|....+.|+++|+|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------~------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------N------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------C------ChHHHHHHHHHCCCEEE
Confidence 4 34677899999999999998887431 1 25668899999999988
Q ss_pred eEEec--C-CceeEEEEe
Q 018145 345 NFASC--V-CNLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~-~~~~vi~~~ 359 (360)
+..-. . -++-+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 76533 2 344466654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=105.98 Aligned_cols=100 Identities=13% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------------CCCCcEEEecCCCC--C--CCCC--
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S--VPEG-- 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~--~~~~-- 256 (360)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 77776543 23679999999986 2 4444
Q ss_pred cEEEeccccccCChh--H----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 DAILMKWILHCWDDD--H----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 D~i~~~~vlh~~~~~--~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|++...-.+.... . ...+|+.++++|||||+|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 998875433221100 0 13699999999999999998653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=104.97 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=87.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEE--------Ee-cCCCCCCCC
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEH--------VG-GNMFESVPE 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~--------~~-~d~~~~~~~ 255 (360)
..++.++....+.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. +++.. .. .|+....+
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP- 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC-
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC-
Confidence 44444542234579999999999999999988 3358999998 7787775432 33322 22 22221111
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC-------ccCC
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG-------RERT 328 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~t 328 (360)
|.+.+..++.++ ..+|++++++|||||++++.. .+. .. .... .. ...| ...+
T Consensus 105 -d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~------~e---~~~~--~~--~~~G~~~d~~~~~~~ 163 (232)
T 3opn_A 105 -SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ------FE---AGRE--QV--GKNGIIRDPKVHQMT 163 (232)
T ss_dssp -SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH------HH---SCHH--HH--C-CCCCCCHHHHHHH
T ss_pred -CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc------cc---cCHH--Hh--CcCCeecCcchhHHH
Confidence 444444444332 468999999999999999953 110 00 0000 00 0011 1136
Q ss_pred HHHHHHHHHHcCCceeeEEecC
Q 018145 329 KKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
.+++.++++++||++..+...+
T Consensus 164 ~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 164 IEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHTEEEEEEEECS
T ss_pred HHHHHHHHHHCCCEEEEEEEcc
Confidence 7899999999999998887654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.23 E-value=8.1e-12 Score=115.26 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=84.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D 257 (360)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555554 456789999999999999988886 56789999985466655432 579999999988 55554 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
+|++..+++++..+.....+.++++.|||||++++.
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999999998887777778899999999999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=118.70 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
.+.+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+..+++.|++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345666665 45678999999999999998887 577899999995477666532 579999999998 66655
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
|+|++..+++++..++....+.++++.|||||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777778888899999999999985
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=106.89 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhh--CCCCeEEEecc-hhHHHhCCCC---C-------C---------------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK--YPQIKAVNFDL-PHVVQDAPSY---A-------G--------------------- 241 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~--------------------- 241 (360)
.++.+|||+|||+|.++..+++. .+..+++++|+ +.+++.|++. . +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35689999999999999999998 77888999999 8888877632 2 2
Q ss_pred ----cE-------------EEecCCCCCC------CC-C-cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcE
Q 018145 242 ----VE-------------HVGGNMFESV------PE-G-DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGK 289 (360)
Q Consensus 242 ----v~-------------~~~~d~~~~~------~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~ 289 (360)
++ +..+|+++.. +. . |+|+++..++.... +....++++++++|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 67 9999998844 33 3 99999876665432 5567899999999999999
Q ss_pred EEEEeee
Q 018145 290 VIVMNSI 296 (360)
Q Consensus 290 lli~e~~ 296 (360)
++++...
T Consensus 210 l~~~~~~ 216 (250)
T 1o9g_A 210 IAVTDRS 216 (250)
T ss_dssp EEEEESS
T ss_pred EEEeCcc
Confidence 9995543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=106.23 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC--------CCCc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV--------PEGD 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~--------~~~D 257 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+.. ...|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34578999999999999999999998 789999998 8888776542 46999999987621 1249
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++.... .....+++.+.+.|+|||++++.+...+
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99986542 3456899999999999998888776554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=104.44 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=79.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC-CC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV-PE-G- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~-~~-~- 256 (360)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+.. +. .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3344444 567889999999999999999998 578889998 8888877642 47999999998733 22 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++..++|++++ .+.+.|||||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999875 478899999999997654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=100.52 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--C-CCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--V-PEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~-~~~-D~i~~~~ 263 (360)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+ . . +.. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5668999998 8888887653 479999999877 2 3 233 9999988
Q ss_pred ccccCChhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~ 297 (360)
.+|+. .++...+++.+.+ .|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87753 3567889999999 999999999977544
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=106.18 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC-CCCC-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES-VPEG-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~-~~~~-D~i~~~~vl 265 (360)
+++.+|||+|||+|.++..+++..+. +++++|+ +.+++.++++ ++++++.+|+.+. .+.. |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999998 8888877642 4599999999983 3333 999885331
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
....+++.+.+.|||||++++.+...... ......+++.+.++++||+...
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 23568999999999999999988754210 0012456788999999998765
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=104.36 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+....+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3444444 5667899999999999999999987 6689999998 8888877653 469999999866444 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++|+++ +++.+.|||||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999877 278899999999999764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=104.93 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=75.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~-D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .++++..+|+.+..+ .. |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999998 8888776542 359999999988433 33 99997542 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+...+++.+++.|+|||++++..
T Consensus 143 ----~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 24588999999999999999864
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=109.24 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=82.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~- 255 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35555555 667789999999999999999999 67899999998 8888877643 4799999999875553
Q ss_pred C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. |+|++. .++ ...+|+++.++|+|||++++.++
T Consensus 181 ~~D~V~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPD--PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 999983 332 24689999999999999999874
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=105.58 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCC---CCcEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP---EGDAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~---~~D~i 259 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+ ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44578999999999999999999998 789999999 8888877643 479999999865 222 23999
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
++... ......+++++.+.|||||+|++.+....
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 98543 33556799999999999999998776553
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.3e-11 Score=108.89 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=78.5
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~- 256 (360)
.+...+. ..++.+|||||||+|.++..+++. +..+++++|..++++.|++. ++++++.+|+.+ +++. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 556789999999999999998887 45689999984477776542 579999999988 6663 3
Q ss_pred cEEEecc---ccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 257 DAILMKW---ILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 257 D~i~~~~---vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
|+|++.. .+++ ......+|+.+++.|||||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3443 3356789999999999999998
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.18 E-value=9e-11 Score=101.59 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=99.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-C--CcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-E--GDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-~--~D~i~~~~v 264 (360)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++ . .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999999889999998 8888887653 579999999998443 2 499988664
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
. .+-+..+|....+.|+++++|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------~------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPN-------------------------I------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------S------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcC-------------------------C------ChHHHHHHHHHCCCEEE
Confidence 3 34677899999999999999887531 0 24567889999999986
Q ss_pred eEEec--CC-ceeEEEEe
Q 018145 345 NFASC--VC-NLYIMEFF 359 (360)
Q Consensus 345 ~~~~~--~~-~~~vi~~~ 359 (360)
+..-. .+ ++-+|.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 65422 33 44466553
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-11 Score=103.14 Aligned_cols=94 Identities=15% Similarity=0.136 Sum_probs=76.9
Q ss_pred CcceEEEEcCCcchHHHHHHhh----CCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCC--C---CC--CcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSK----YPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFES--V---PE--GDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~--~---~~--~D~i~~~~ 263 (360)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.|+.. ++|+++.+|+.+. + +. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 68899999999 8888877643 6899999999873 2 22 39998765
Q ss_pred ccccCChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 018145 264 ILHCWDDDHCLRILKNCYK-AVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~-~LkpgG~lli~e~ 295 (360)
. |. +...+|+.+.+ .|||||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 45678999997 9999999999775
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-11 Score=111.57 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..++.+|||||||+|.++..+++. +..+++++|..++++.|++. ++|+++.+|+.+ +.+.. |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345689999999999999999987 66789999985577766542 459999999998 66643 99998765
Q ss_pred cccC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 265 LHCW-DDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 265 lh~~-~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+++ .......+++.+.++|||||+++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 4443 234567899999999999999874
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=109.09 Aligned_cols=98 Identities=14% Similarity=0.247 Sum_probs=78.6
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCC-CC-cEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVP-EG-DAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~-~~-D~i~~~~vl 265 (360)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|..+ ..+ .. |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 8899887642 589999999876 233 23 999986554
Q ss_pred ccCChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 266 HCWDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 266 h~~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+...... ...+++.++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4332222 25789999999999999988664
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=105.79 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=101.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC-CCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES-VPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~-~~~~-D~i~~~~vlh~ 267 (360)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++.+ .+.++...|.... .+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 8888877653 4578999999884 3433 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
+.++.....+ ++.++|+|+|.++..+.-.=.. +.+ .+ .......|++.+.+.|... +..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G-rs~-------gm-----------~~~Y~~~~e~~~~~~g~~~-~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ-RSK-------GM-----------FQNYSQSFESQARERSCRI-QRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CH-----------HHHHHHHHHHHHHHHTCCE-EEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC-CCc-------ch-----------hhHHHHHHHHHHHhcCCce-eee
Confidence 9887766777 9999999999888766511110 000 11 1123567999999999854 444
Q ss_pred ecCCc
Q 018145 348 SCVCN 352 (360)
Q Consensus 348 ~~~~~ 352 (360)
..++.
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 44443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=106.62 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=80.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC----CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~----~~-D~i~~ 261 (360)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++. ++++++.+|+.+..+ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34578999999999999999999889999999998 8888877652 479999999987433 33 99997
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.... .....+++.+.+.|||||+|++-+....
T Consensus 149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLYH 180 (232)
T ss_dssp ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence 6432 2456799999999999999988665543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=106.28 Aligned_cols=100 Identities=11% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---CCC-----C-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---SVP-----E-G 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~~~-----~-~ 256 (360)
..++.+|||||||+|..+..+++.++ +.+++++|+ +.+++.|+++ ++|+++.+|+.+ ..+ . .
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999875 789999998 8888887653 469999999754 222 2 3
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++....+++. ....+++.+ +.|||||+|++.+...
T Consensus 136 D~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9999988777654 334677777 9999999998866554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-11 Score=104.92 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C-----CCC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V-----PEG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-----~~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.|+++ ++|+++.+|+.+. . +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999986 789999998 7777776542 5899999998762 2 233 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+|++... ......+++.+.+.|||||+|++-+...+.
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9988653 234567899999999999999998876643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=111.18 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-----------------CCcEEEe
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------------AGVEHVG 246 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~~v~~~~ 246 (360)
..++..+. ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.|+++ .+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667889999999999999999998 57789999998 7777776542 4799999
Q ss_pred cCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 247 GNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 247 ~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+|+.+. ++.+ |+|++...- + ..+++.+++.|+|||+|++..+.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~~-----~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDMLN-----P--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSSS-----T--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCCC-----H--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3433 999984321 1 13789999999999999987754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=111.57 Aligned_cols=104 Identities=13% Similarity=0.230 Sum_probs=79.5
Q ss_pred HHHHhhcccCCCcceEEEEcCC------cchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCC--
Q 018145 186 ERILEHYEGFQNVERLVDVGGG------FGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVP-- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~-- 254 (360)
+.++..+. .++.+||||||| +|..+..+++. +|+.+++++|+ +.+.. ..++++++.+|+.+ ++.
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34454443 456899999999 67667777765 59999999999 66632 34789999999988 443
Q ss_pred -----CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 -----EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 -----~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.. |+|++.. .|++ .+....|++++++|||||++++.|...
T Consensus 282 l~~~d~sFDlVisdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 282 IARRYGPFDIVIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HHHHHCCEEEEEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred hhcccCCccEEEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 23 9999864 4654 356789999999999999999988763
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=105.63 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=78.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.+..+|+.+ +++.+ |+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~---- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence 4568999999999999999999988889999998 8888877654 678999999987 55543 9999866532
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+++++++|||||++++.++..
T Consensus 160 -----~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -----KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hHHHHHHhcCCCcEEEEEEcCH
Confidence 4889999999999999998654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=103.35 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=79.9
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCCCC--CC-c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFESVP--EG-D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~~~--~~-D 257 (360)
..++..+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ .. |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34455554 5667899999999999999999986 68888888 8888877643 279999999987333 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+|++..++|++++ .+.+.|||||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999999873 578899999999998753
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=110.97 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vl 265 (360)
..++.+|||||||+|.++..+++.. ..+++++|...+++.+++. ++|+++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5567899999999999999999873 4489999986666666542 569999999988 56544 999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 266 HCWDD-DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 266 h~~~~-~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|.+.. .....+++.+++.|||||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 66542 34677999999999999999886544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=105.30 Aligned_cols=100 Identities=11% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCC--------CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES--------VPE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~--------~~~ 255 (360)
..++.+|||+|||+|.++..+++++|..+++++|+ +.+++.|+++ ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999998 7777765431 2599999999874 233
Q ss_pred -C-cEEEecccccc----------------CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 -G-DAILMKWILHC----------------WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 -~-D~i~~~~vlh~----------------~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. |+|+++-.++. ........+++.+.+.|||||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 99999733321 222236788999999999999999854
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-11 Score=103.98 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=81.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCC--
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPE-- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~-- 255 (360)
...+++.+. ..++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .++++..+|+..+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555554 66778999999999999999999987 88999997 8888877642 4699999998545442
Q ss_pred -CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 -GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 -~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|++..+++++++ ++.+.|||||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 399999999998763 67889999999999764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.1e-11 Score=108.48 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=81.0
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-C-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-E-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~-~ 256 (360)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4444454 56778999999999999999999887 478999998 8888877643 469999999987322 2 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++..++|+++ +.+.+.|||||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 9999999999877 3678899999999997543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-11 Score=103.54 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CC-----CC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~-----~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999988 789999998 8888777542 4699999998652 11 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++... ......+++.+.+.|||||+|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9996543 33456799999999999999999887654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-11 Score=104.72 Aligned_cols=95 Identities=16% Similarity=0.357 Sum_probs=73.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC--------------CCCCcEEEecCCCCC----CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP--------------SYAGVEHVGGNMFES----VPE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~d~~~~----~~~ 255 (360)
.+++.+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+. ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34568999999999999999999999999999998 77776553 225799999999873 333
Q ss_pred C--cEEEeccccccCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 018145 256 G--DAILMKWILHCWDDDHC-----------LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~-----------~~~L~~i~~~LkpgG~lli~e 294 (360)
+ |.|++. ++++.. ..+++.+.++|+|||+|++..
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 3 666643 233211 478999999999999999954
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-11 Score=104.52 Aligned_cols=98 Identities=13% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--CCC-cEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--PEG-DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~~~-D~i~ 260 (360)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+. . +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999998 8888877643 4799999998773 1 233 9999
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+....+ ....+|+.+.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 877654 34678999999999999999976544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-11 Score=109.13 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCC-CC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVP-EG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~-~~-D~i~~~~vlh~ 267 (360)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.++++ ..++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 468889998 8888877653 258999999998 343 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 268 ---WDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 268 ---~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+....+++++++.|||||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3345678999999999999999999753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=103.19 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=75.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-CCC---cEEEec--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PEG---DAILMK-- 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-~~~---D~i~~~-- 262 (360)
++.+|||||||+|.++..+++. |+.+++++|+ +.+++.|+++ ++++++.+|+++.. ... |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 8888877653 36999999999843 345 999996
Q ss_pred ----------cccccCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 018145 263 ----------WILHCWDDD------HCLRILKNCY-KAVPGNGKVIV 292 (360)
Q Consensus 263 ----------~vlh~~~~~------~~~~~L~~i~-~~LkpgG~lli 292 (360)
.+. |.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 333 22221 1126899999 99999999997
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=7e-11 Score=97.98 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=76.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CCCC-cEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VPEG-DAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~~~-D~i~~~~ 263 (360)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.. |+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999887 6678999998 8888877642 3699999998762 2233 9999987
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
.++. .....+++.+. +.|+|||++++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 6642 34456677776 9999999999977544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=106.31 Aligned_cols=96 Identities=15% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-cEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~-D~i~~~~vl 265 (360)
.++.+|||||||+|.++..+++. +..+++++|...+++.+++. ++|+++.+|+.+ +.+. . |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45679999999999999988886 55689999985577766532 579999999988 5663 3 999987654
Q ss_pred ccCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+.+. ......+++.+.+.|||||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 33456889999999999999974
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-10 Score=93.94 Aligned_cols=105 Identities=17% Similarity=0.321 Sum_probs=76.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCC-----------
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV----------- 253 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----------- 253 (360)
..++.+.+..++++.+|||+|||+|.++..+++. ..+++++|+..+ ...++++++.+|+.+..
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 3455666653567799999999999999999988 778999998332 22368999999998731
Q ss_pred ---CCCcEEEeccccccCC----h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 254 ---PEGDAILMKWILHCWD----D-----DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 254 ---~~~D~i~~~~vlh~~~----~-----~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...|+|++........ + +.+..+|+.+.+.|||||+|++..+
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 2339999854322111 1 1235789999999999999997654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-10 Score=93.70 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=75.8
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC---------CeEEEecchhHHHhCCCCCCcEEE-ecCCCC-C----
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ---------IKAVNFDLPHVVQDAPSYAGVEHV-GGNMFE-S---- 252 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~-~---- 252 (360)
+...+..+.++.+|||||||+|.++..+++.++. .+++++|+..+ ...++++++ .+|+.+ +
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 3344443456789999999999999999999865 78999998442 123568999 999876 2
Q ss_pred ----CCC-C-cEEEeccccccC----ChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 253 ----VPE-G-DAILMKWILHCW----DDDH-----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 253 ----~~~-~-D~i~~~~vlh~~----~~~~-----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+. . |+|++...+|.. .+.. ...+++.++++|||||++++...
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 999986554431 1111 14789999999999999998765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.5e-10 Score=98.96 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc--hhHHHhCCCC----------------CCcEEEecCCCCC---C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL--PHVVQDAPSY----------------AGVEHVGGNMFES---V 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~d~~~~---~ 253 (360)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888763 447888887 5676655321 2688886655431 2
Q ss_pred -----CCC-cEEEeccccccCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 018145 254 -----PEG-DAILMKWILHCWDDDHCLRILKNCYKAVP---G--NGKVIVM 293 (360)
Q Consensus 254 -----~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~Lk---p--gG~lli~ 293 (360)
+.. |+|+++.++|+.+ ....+++.++++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 223 9999999999844 56789999999999 9 9998774
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-11 Score=102.11 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C---------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--------- 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--------- 253 (360)
..++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+. .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34568999999999999999999987 689999998 8888777643 3599999998652 1
Q ss_pred ------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 254 ------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 254 ------~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+ .. |+|++.... +....+++++.+.|+|||++++.+...+
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 1 33 999987543 3456889999999999999999775543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-11 Score=98.10 Aligned_cols=98 Identities=9% Similarity=-0.021 Sum_probs=75.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC------CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~------~~~-D~i~ 260 (360)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999998887 45678999998 8888877653 46999999987721 233 9999
Q ss_pred eccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i--~~~LkpgG~lli~e~~~ 297 (360)
+...++... ....++.+ .+.|+|||++++.....
T Consensus 122 ~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 987765333 23456666 88899999999876544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.6e-11 Score=101.07 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=77.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--CCCC-CcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVPE-GDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~~~~-~D~i~~~~v 264 (360)
++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999988 789999998 8888877643 469999999865 2222 599987632
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
......+++.+++.|||||++++.+....
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22456889999999999999998765543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.9e-11 Score=101.47 Aligned_cols=95 Identities=6% Similarity=0.117 Sum_probs=75.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC---CC-CCC-cEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE---SV-PEG-DAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~---~~-~~~-D~i~~~ 262 (360)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++. ++|+++.+|+.+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999885 789999998 8888877542 479999999876 23 233 999886
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.... ....+++.+.+.|||||+|++-+..+
T Consensus 137 ~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSPM-----DLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCTT-----THHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 5332 34578999999999999999866554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=102.43 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=78.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--C-C------CC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~-~------~~- 255 (360)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ + . +.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999998 8888877642 479999999865 2 2 23
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|+|++.... .....+++.+.+.|||||+|++.+..+
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 3999986432 245688999999999999999876554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=102.41 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=77.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC-CCC-cEEEec-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-PEG-DAILMK- 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~-~~~-D~i~~~- 262 (360)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 488999998 7788776543 468999999887 32 333 999972
Q ss_pred -----cccccCC-------hhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 -----WILHCWD-------DDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 -----~vlh~~~-------~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++++.+ .++ ...+|+++.+.|||||+|++.+...
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 3344322 222 1589999999999999999877543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.6e-10 Score=97.44 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC--C------CcEEE--ecCCCCCCCC-CcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFESVPE-GDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~d~~~~~~~-~D~i~~~~ 263 (360)
+.++.+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+. .|+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 566789999999999999998887 678899984454443322 2 68999 8999872133 39999976
Q ss_pred ccccCChhH-----HHHHHHHHHHhCCCCc--EEEEEeee
Q 018145 264 ILHCWDDDH-----CLRILKNCYKAVPGNG--KVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~-----~~~~L~~i~~~LkpgG--~lli~e~~ 296 (360)
+ +..+... ...+|+.++++||||| .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 6 4433211 1247899999999999 99886544
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-10 Score=101.21 Aligned_cols=99 Identities=11% Similarity=0.196 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---CC-----CC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---VP-----EG- 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~~-----~~- 256 (360)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 44578999999999999999999987 789999998 8888776542 5799999998652 21 33
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|+|++... ......+++.+.+.|+|||++++.+....
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLWR 183 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence 99998543 23456789999999999999999776543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=98.92 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC------CCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCCCC-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP------QIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESVPE- 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~~~- 255 (360)
..++.+|||||||+|.++..+++..+ ..+++++|. +.+++.++++ .+++++.+|..+..+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 368999998 8888877542 4799999999875443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+ |+|++...+++++ +++.+.|||||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 2 9999999998765 578899999999998754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-10 Score=99.33 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=75.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-C-C---CC-CcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-S-V---PE-GDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~-~---~~-~D~i~~ 261 (360)
++.+|||+|||+|.++..++... ..+++++|+ +.+++.++++ ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 45799999999999999877764 357999998 8888877642 479999999876 2 1 24 599999
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i--~~~LkpgG~lli~e~~~ 297 (360)
...+| . .....+++.+ .++|+|||++++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87765 3 3456788888 56799999999876543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=100.53 Aligned_cols=103 Identities=13% Similarity=0.227 Sum_probs=81.2
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCC-CC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFE-SV 253 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~ 253 (360)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +.
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 45566565 667789999999999999999996 57889999998 888776653 2479999999987 45
Q ss_pred CC-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 254 PE-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 254 ~~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+. . |+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 168 ~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 43 3 999982 2322 36799999999999999998753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=98.74 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-----hhHHHhCC--CC--CCcEEEec-CCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-----PHVVQDAP--SY--AGVEHVGG-NMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-d~~~-~~~~~D~i~~~~ 263 (360)
++++.+|||||||+|.++..+++. .+++++|. +..++... .. ++|+++.+ |+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999887 36777776 43333222 12 56999999 8887 333349999976
Q ss_pred ccc---cCChhH-HHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ILH---CWDDDH-CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 vlh---~~~~~~-~~~~L~~i~~~LkpgG~lli~e 294 (360)
.++ +..++. ...+|+.++++|||||.|++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 653 222221 1257899999999999888743
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=95.03 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++.. ..+++...|... +.+.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999998877 8999999999 8888887653 557899999998 54444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+.+++....+ ++.+.|+|++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9877666666 8999999998777665
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-10 Score=95.95 Aligned_cols=95 Identities=17% Similarity=0.061 Sum_probs=73.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-CcEEEecCCCCCCC-------CCcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVP-------EGDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~d~~~~~~-------~~D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++..+. ++++|+ +.+++.++++ . +++++.+|+.+..+ ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998766 888898 8888887653 2 79999999876211 239999988
Q ss_pred ccccCChhHHHHHHHHHH--HhCCCCcEEEEEeeec
Q 018145 264 ILHCWDDDHCLRILKNCY--KAVPGNGKVIVMNSIV 297 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~--~~LkpgG~lli~e~~~ 297 (360)
.+|. .. ..+++.+. +.|||||++++.....
T Consensus 119 ~~~~-~~---~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DL---AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CT---THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hH---HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7762 22 23455555 9999999999877644
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=103.35 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999888889999998 888886643 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+....+..+.... ..+++.++++|+|||++++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654443333332 589999999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-10 Score=98.31 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=71.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC--C------CcEEE--ecCCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY--A------GVEHV--GGNMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~d~~~-~~~~~D~i~~~~ 263 (360)
++++.+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+ +....|+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999887 578899984464444322 2 68999 899876 411239999977
Q ss_pred ccccCChhH-----HHHHHHHHHHhCCCCc--EEEEEeee
Q 018145 264 ILHCWDDDH-----CLRILKNCYKAVPGNG--KVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~-----~~~~L~~i~~~LkpgG--~lli~e~~ 296 (360)
+ +..+... ...+|+.+.++||||| .+++..+.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 6 4332211 1247899999999999 98885543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-10 Score=102.57 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=84.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP- 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~- 254 (360)
+..++.... +.++.+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ .++++..+|+.+ +.+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555444 6778899999999999999999988 8899999998 8888887653 379999999988 443
Q ss_pred CC-cEEEeccccccCCh--hH----HHHHHHHHHHhCCCCcEEEEEee
Q 018145 255 EG-DAILMKWILHCWDD--DH----CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 255 ~~-D~i~~~~vlh~~~~--~~----~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. |+|+++-....... .+ ...+++.+++.|||||+++++.+
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 23 99999544332111 11 26789999999999999999753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-10 Score=104.70 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC---CCCC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~~-~-D~i 259 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888887654 2579999999875 2332 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 018145 260 LMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 260 ~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~ 293 (360)
++...-+..+.+. ...+++.++++|+|||+|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9855422211222 368999999999999999986
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=102.08 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=76.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~~ 261 (360)
++.+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .++++++.+|..+. .++. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 468999999999999999998877889999998 888887653 26899999998762 2233 99999
Q ss_pred ccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e 294 (360)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443322111 2478999999999999998864
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-10 Score=104.01 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=78.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCC---CCCC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~---~~~~-D~i 259 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+. .+.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999888889999998 888876643 25799999998762 2233 999
Q ss_pred Eecccccc---CChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHC---WDDDH--CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~---~~~~~--~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++....|. -+... ...+++.++++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99766654 11111 36889999999999999998643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=95.91 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=79.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC-CC-C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV-PE-G 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~-~~-~ 256 (360)
.++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455554 567789999999999999999998 778999998 7888776542 57999999998854 43 3
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|+|++. .+ +...+++.+.+.|+|||++++..+.
T Consensus 159 ~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999973 23 2246799999999999999998853
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-10 Score=96.69 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCCC----
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFESV---- 253 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~---- 253 (360)
..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. .+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 5678999998 8888777542 47999999988743
Q ss_pred -CC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 254 -PE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 254 -~~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+. .|+|++...++++ ++.+.+.|||||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 22 2999999998864 46788999999999997653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-10 Score=103.03 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC--CC-CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--SV-PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~~-~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+ +. +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888877653 3579999999865 22 233 9999
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 261 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+....+..+.. ....++++++++|+|||++++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86544332211 124689999999999999998653
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-10 Score=101.32 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=74.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----------------CCCCcEEEecCCCCC--CCCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----------------SYAGVEHVGGNMFES--VPEG 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~d~~~~--~~~~ 256 (360)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.|+ ..++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 88877654 235799999998652 1333
Q ss_pred -cEEEeccccccCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 -DAILMKWILHCWDDDH--CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~--~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++....+..+... ...+++.++++|+|||++++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543322222 2678999999999999999864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-11 Score=106.59 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=94.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~D~i~~~~vl 265 (360)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. .|+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 356899999999999999999874 78899998 8888877643 379999999987 4222 3999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceee
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGIN 345 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 345 (360)
|+.++. ...+.+++++|+|||.+++........ . .... -......+++.+++...|.-.+.
T Consensus 155 ~~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~-~--------~~~~--------lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 155 GGPDYA--TAETFDIRTMMSPDGFEIFRLSKKITN-N--------IVYF--------LPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp SSGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHCS-C--------EEEE--------EETTBCHHHHHHTTCTTCCEEEE
T ss_pred CCcchh--hhHHHHHHhhcCCcceeHHHHHHhhCC-c--------eEEE--------CCCCCCHHHHHHHhccCCCEEEE
Confidence 986543 336778999999999855432111000 0 0000 01123567777788777766565
Q ss_pred EEecCCcee
Q 018145 346 FASCVCNLY 354 (360)
Q Consensus 346 ~~~~~~~~~ 354 (360)
.....+...
T Consensus 216 ~~~~~~~~k 224 (241)
T 3gdh_A 216 QNFLNNKLK 224 (241)
T ss_dssp EEEETTEEE
T ss_pred ehhhcCccc
Confidence 555554433
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-10 Score=103.56 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=73.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC--C-CCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~--~-~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .++++++.+|+.+. . +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888899999999 888876643 25799999998762 1 233 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+...-+.-++... ..+++.++++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332222222 688999999999999999865
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-10 Score=95.18 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=74.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--CCCC-C-cEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVPE-G-DAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~~~~-~-D~i~~~~vl 265 (360)
++.+|||+|||+|.++..+++... .+++++|+ +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998777653 47899998 8888887653 479999999876 3332 3 999998775
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~ 297 (360)
| .. ....+++.+.+ +|+|||++++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5 22 34567888876 499999999876543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-10 Score=103.37 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=76.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~~-D~i~ 260 (360)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999999878889999998 888876643 25799999998762 2333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHC--LRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~--~~~L~~i~~~LkpgG~lli~e 294 (360)
+...-+..+.... ..+++.+++.|+|||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8543222122222 689999999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=94.33 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCCC-CCC--CcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFES-VPE--GDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~-~~~--~D~ 258 (360)
..++.+|||||||+|..+..+++.. |..+++++|+ +.+++.++++ .+++++.+|+... .+. .|+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3567899999999999999999885 6679999998 8888776532 3799999998763 222 299
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|++...++++. +++.+.|||||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887654 5788999999999997643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-10 Score=99.32 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--C-C------CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--S-V------PEG 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~-~------~~~ 256 (360)
..++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++|+++.+|+.+ + . +..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999987 789999998 8888777542 479999999875 2 2 233
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+|++... ......+++.+.+.|+|||++++.+...
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987532 3355789999999999999998866544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=99.53 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=77.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C--C---CC-c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V--P---EG-D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~--~---~~-D 257 (360)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.|++. ++++++.+|+.+. . + .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3467999999999999999999987 689999998 8888877642 4699999997541 1 1 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+|++... ......+++.+.+.|+|||+|++.+..++
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 9997654 23556899999999999999999776553
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.4e-10 Score=99.58 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~ 256 (360)
..+++.++ ..++.+|||||||+|.++..+++... +++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f 94 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 94 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence 45556565 56778999999999999999999854 6777777 7787766532 479999999998 66656
Q ss_pred cEEEeccccccCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 018145 257 DAILMKWILHCWDDDHCLRILKN--------------C--YKAVPGNGKVI 291 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~--------------i--~~~LkpgG~ll 291 (360)
|+|+++...| ++.+-...+|.. + +++++|||+++
T Consensus 95 D~vv~nlpy~-~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 95 DTCVANLPYQ-ISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cEEEEecCcc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9998855444 454444455532 2 46899999663
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=100.73 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=70.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCCCC-CCCCC-cEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG-DAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~ 267 (360)
++.+|||||||+|.++...++. ...+++++|..++++.|++ .++|+++.+|+.+ +.|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4579999999999998766665 3457899997556666653 1679999999988 77765 99987333222
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 268 WD-DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 268 ~~-~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+. ......++....+.|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 23567788888999999998874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.2e-10 Score=100.19 Aligned_cols=98 Identities=21% Similarity=0.227 Sum_probs=73.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC--C-CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES--V-PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~--~-~~~-D~i~~ 261 (360)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999888889999998 888876653 25899999998652 2 233 99997
Q ss_pred ccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
...-+..... ....+++.+++.|+|||++++..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4332211111 12578999999999999999863
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=98.87 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-CCCC-cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG-DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~-~~~~-D~i~~~~vl 265 (360)
+.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999998 8888877652 4689999999874 2223 999986543
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
....+++.+.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 33568999999999999999988765
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-09 Score=90.74 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCCC-cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEG-DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~~-D~i~~~~vlh~~~~~ 271 (360)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ .+.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999887 5557999998 8888887654 379999999887 2334 999999999998764
Q ss_pred HHHHHHHHHHHhC
Q 018145 272 HCLRILKNCYKAV 284 (360)
Q Consensus 272 ~~~~~L~~i~~~L 284 (360)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4567899999998
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-10 Score=108.20 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=80.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC---CCCC--CcEEEecc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE---SVPE--GDAILMKW 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~---~~~~--~D~i~~~~ 263 (360)
.++.+|||||||.|.++..+++. +.+++++|. +.+++.|+.+ ..|+|..+++.+ ..+. .|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999997 568999998 8888876542 258999999876 2332 39999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+|||+++++....+.++.+.|+++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998776555566777888888888877765433
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=94.15 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCCCCCCcEEEeccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFESVPEGDAILMKWI 264 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~~~~~D~i~~~~v 264 (360)
..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|+++ ++++++.+|..+.....|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~- 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ- 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC-
Confidence 35689999999999999999998 7 89999999 8999988763 479999999887432339999862
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+++. .+++.+++.|+|||.+++..
T Consensus 148 ----~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 ----EPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----CCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred ----CChH--HHHHHHHHhcCCCcEEEEEc
Confidence 2222 48999999999999999853
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-08 Score=89.78 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=95.6
Q ss_pred cceEEEEcCCcchHHHHH--------HhhC-------CCCeEEEecchh-H-------HHhCCC----------C-CC--
Q 018145 198 VERLVDVGGGFGVTLSMI--------TSKY-------PQIKAVNFDLPH-V-------VQDAPS----------Y-AG-- 241 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~-~~-- 241 (360)
+.+|+|+|||+|..+..+ .+.+ |.+++...|+|. . +...++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999888765 3333 778888888852 1 122111 0 01
Q ss_pred -cEEEecCCCC-CCCCC--cEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 018145 242 -VEHVGGNMFE-SVPEG--DAILMKWILHCWDD------------------------------------DHCLRILKNCY 281 (360)
Q Consensus 242 -v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~------------------------------------~~~~~~L~~i~ 281 (360)
+.-+.+.+.. .+|.. |+|+++.+||++++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777 67765 99999999999872 14456799999
Q ss_pred HhCCCCcEEEEEeeecCCCCCCchhh--h-h-hhhhhHHHhhhcC-------------CCccCCHHHHHHHHH-HcCCce
Q 018145 282 KAVPGNGKVIVMNSIVPEIPEVSSAA--R-E-TSLLDVLLMTRDG-------------GGRERTKKEYTELAI-AAGFKG 343 (360)
Q Consensus 282 ~~LkpgG~lli~e~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~-------------~~~~~t~~e~~~ll~-~aGf~~ 343 (360)
+.|+|||++++.-...++........ . + ......+...... .-..++.+|++++++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999888765421111000 0 0 0000001000000 112368999999998 589998
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
.++..
T Consensus 293 ~~le~ 297 (374)
T 3b5i_A 293 DKLVV 297 (374)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.7e-09 Score=98.99 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=80.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CC-CC-cEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VP-EG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~-~~-D~i~~ 261 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 89999998 7777665432 469999999987 3 44 33 99986
Q ss_pred ------ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ------KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ------~~vlh~~~~~-------~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..+++..++. +. ..+|+++.+.|||||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 4455544432 11 578999999999999999988654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=8.1e-09 Score=91.44 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~v 264 (360)
.+++.+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ ++|+++.+|..+-.++ .|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 356789999999999999998887 4568999998 8888877642 5799999999873333 399887532
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
.....+|..+.+.|||||.|.+.+.+..+. ......+.++++.++.|+++
T Consensus 202 ------~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEE
T ss_pred ------CcHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcE
Confidence 123467888999999999998877654321 00123456778888999875
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-08 Score=84.34 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----C-CcEEEecCCCCCCCCCcEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----A-GVEHVGGNMFESVPEGDAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~d~~~~~~~~D~i~~~~vlh~~~ 269 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . +++++.+|+.+.....|+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999998874 347889998 8888877643 2 69999999887212349999998888876
Q ss_pred hhHHHHHHHHHHHhC
Q 018145 270 DDHCLRILKNCYKAV 284 (360)
Q Consensus 270 ~~~~~~~L~~i~~~L 284 (360)
......+++.+.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567899999998
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=91.34 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=81.2
Q ss_pred CCCcceEEEEcCCc------chHHHHHHhhCC-CCeEEEecchhHHHhCCCCCCcEE-EecCCCC-CCCCC-cEEEeccc
Q 018145 195 FQNVERLVDVGGGF------GVTLSMITSKYP-QIKAVNFDLPHVVQDAPSYAGVEH-VGGNMFE-SVPEG-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~d~~~-~~~~~-D~i~~~~v 264 (360)
.+++.+|||||||+ |. ..+++..| +.+++++|+.+.+ +++++ +.+|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 56778999999944 76 44566666 6899999983332 46899 9999987 44444 99998643
Q ss_pred ccc--------C-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 265 LHC--------W-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 265 lh~--------~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
.+. . ..+....+|+.+++.|||||+|++..+... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 012345789999999999999998653211 11356777
Q ss_pred HHHcCCceeeEE
Q 018145 336 AIAAGFKGINFA 347 (360)
Q Consensus 336 l~~aGf~~~~~~ 347 (360)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888888877765
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-09 Score=96.30 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-----CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCC-CC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVP-EG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~-~~-D~i~~~ 262 (360)
.++.+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .++.+..+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45689999999999999999988764 67899998 8888777542 268999999988543 33 999998
Q ss_pred cccccCChhHH----------------HHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDDDHC----------------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~----------------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 87766654332 2589999999999999998875
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=95.37 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC-CC-cEEEec
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EG-DAILMK 262 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~-~~-D~i~~~ 262 (360)
.+++.+. ..++.+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+.+..+ .. |+|+++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3344443 3345699999999999999999887 6788999998 8888777 579999999988433 33 999994
Q ss_pred ccc----------ccCChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WIL----------HCWDDDHC-----------------LRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vl----------h~~~~~~~-----------------~~~L~~i~~~LkpgG~lli~e~ 295 (360)
--. ++++++.. ..+++++.+.|+|||+++++.+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 111 11222221 2569999999999999999875
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=93.91 Aligned_cols=122 Identities=12% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCC-C-cEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPE-G-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-~-D~i~~~~ 263 (360)
+.++.+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ +++++..+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999988778899998 8888887653 378999999988 5543 3 9999965
Q ss_pred ccccCC-----hhH-HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 264 ILHCWD-----DDH-CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 264 vlh~~~-----~~~-~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
.++... ..+ -..+++.+++.| ||+++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 443211 112 257888999988 566665532 2334566788
Q ss_pred HcCCceeeEEecC
Q 018145 338 AAGFKGINFASCV 350 (360)
Q Consensus 338 ~aGf~~~~~~~~~ 350 (360)
+.||+..+.....
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 8899988776653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-09 Score=93.64 Aligned_cols=106 Identities=8% Similarity=0.176 Sum_probs=76.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC-CcE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE-GDA 258 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~-~D~ 258 (360)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. ...
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45555555 5677899999999999999999985 78999998 8888888764 479999999988 6553 333
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEEEEe
Q 018145 259 ILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L--------------~~i~~~LkpgG~lli~e 294 (360)
+++++.-++.+.+....++ +.+.+.|+|||++.++.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 4444433333333333333 66899999999887644
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-09 Score=90.21 Aligned_cols=104 Identities=8% Similarity=0.184 Sum_probs=72.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCC-Cc
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPE-GD 257 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-~D 257 (360)
...+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666555 5667899999999999999999986 67888888 777776653 2689999999988 6664 34
Q ss_pred EEEeccccccCChhHHHHHH--------------HHHHHhCCCCcEEE
Q 018145 258 AILMKWILHCWDDDHCLRIL--------------KNCYKAVPGNGKVI 291 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L--------------~~i~~~LkpgG~ll 291 (360)
.+++++.-++++.+-...++ ..+.+.++|+|++.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 44555544444433333333 33677777777543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.1e-09 Score=92.99 Aligned_cols=100 Identities=11% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~ 256 (360)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 567789999999999999999987 457888888 8887776542 579999999988 55555
Q ss_pred cEEEeccccccCChhHHHHHH---------------HHHHHhCCCCc
Q 018145 257 DAILMKWILHCWDDDHCLRIL---------------KNCYKAVPGNG 288 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L---------------~~i~~~LkpgG 288 (360)
|+|+++-.. +++.+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 999886544 45666666666 34678898877
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-09 Score=94.09 Aligned_cols=103 Identities=10% Similarity=0.056 Sum_probs=76.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CC-----CCC-cEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SV-----PEG-DAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~-----~~~-D~i 259 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998877 88999998 7777766542 479999999876 32 333 999
Q ss_pred Eec------ccccc---CCh-------hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 260 LMK------WILHC---WDD-------DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 260 ~~~------~vlh~---~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
++. .+++. |+. +...++|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 875 33321 111 123678999999999999999877544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=84.48 Aligned_cols=151 Identities=15% Similarity=0.115 Sum_probs=93.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhh----------------CCCCeEEEecchh-HHH-hCCCCC------C---cEEEecC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSK----------------YPQIKAVNFDLPH-VVQ-DAPSYA------G---VEHVGGN 248 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~-~a~~~~------~---v~~~~~d 248 (360)
++..+|+|+||++|..+..+... .|.+.++..|+|. .-. ..+..+ + +.-+.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35689999999999776543332 4667788889842 111 111111 2 3445677
Q ss_pred CCC-CCCCC--cEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 249 MFE-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 249 ~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|.. .+|.. |+|+++.+||++++ .|...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 777 67765 99999999999764 133456999999999999999988
Q ss_pred eecCCCCCCc-----hhh-hhhhhhhHHHhhh---------cCCCccCCHHHHHHHHHHcC-CceeeE
Q 018145 295 SIVPEIPEVS-----SAA-RETSLLDVLLMTR---------DGGGRERTKKEYTELAIAAG-FKGINF 346 (360)
Q Consensus 295 ~~~~~~~~~~-----~~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
...++..... ... ....+.++..... ...-..++.+|+++++++.| |++.++
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 8776531100 000 1111112111100 00123468999999999996 466554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-07 Score=86.60 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=92.9
Q ss_pred cceEEEEcCCcchHHHHHHhh-----------------CCCCeEEEecch-----------h-HHHhC----CCCCC---
Q 018145 198 VERLVDVGGGFGVTLSMITSK-----------------YPQIKAVNFDLP-----------H-VVQDA----PSYAG--- 241 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~~--- 241 (360)
..+|+|+||++|..+..+... .|.+.++..|+| . ..+.. ....+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999988876665 366788888987 1 11111 11112
Q ss_pred cEEEecCCCC-CCCCC--cEEEeccccccCChhH-------------------------H------------HHHHHHHH
Q 018145 242 VEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH-------------------------C------------LRILKNCY 281 (360)
Q Consensus 242 v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~i~ 281 (360)
+.-+.+.|.. .+|.. |+|+++.+||++++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666 57765 9999999999976321 1 12377889
Q ss_pred HhCCCCcEEEEEeeecCCC--CCCchhhhhhhhhhHHHhhh--------c-CCCccCCHHHHHHHHHHcC-CceeeEE
Q 018145 282 KAVPGNGKVIVMNSIVPEI--PEVSSAARETSLLDVLLMTR--------D-GGGRERTKKEYTELAIAAG-FKGINFA 347 (360)
Q Consensus 282 ~~LkpgG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~t~~e~~~ll~~aG-f~~~~~~ 347 (360)
+.|+|||++++.-...++. ...........+.++..... . ..-..++.+|++++++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988776553 11100001111222111100 0 0123468999999999985 7876654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-08 Score=94.52 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C--CCC-C-cEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VPE-G-DAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--~~~-~-D~i~~-- 261 (360)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.++++ .+++++.+|+.+ + ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56678999999999999999999998889999998 7766665432 258899999987 3 333 3 99986
Q ss_pred ----ccccccCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ----KWILHCWDDD-------HC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ----~~vlh~~~~~-------~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..++++.++. +. ..+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 3445544331 11 478999999999999999988544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-08 Score=91.25 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=73.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------C-CcEEEecCCCCCC------C-CCcEEE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------P-EGDAIL 260 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~d~~~~~------~-~~D~i~ 260 (360)
++.+|||+|||+|.++..+++... +++++|+ +.+++.++++ + +++++.+|+++.. . ..|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999998643 8999998 8888877653 2 4999999998721 2 239998
Q ss_pred eccc----------cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 261 MKWI----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 261 ~~~v----------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+.-- ++. .++...+++.+.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8321 121 235678999999999999998876654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=96.37 Aligned_cols=102 Identities=9% Similarity=0.097 Sum_probs=77.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEe-
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~- 261 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . |.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999999875 78999998 7788776543 4 8899999876 2 2333 99985
Q ss_pred -----ccccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 -----KWILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 -----~~vlh-------~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..+++ .|+.+++ .++|+.+.+.|||||+|+..+...
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 12222 2333332 678999999999999999876544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-08 Score=93.35 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=77.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEe---
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILM--- 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~--- 261 (360)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+|+++.+|+.+ + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777766542 468999999987 3 3343 99987
Q ss_pred c---cccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 K---WILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~---~vlh-------~~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ .+++ +|+.++ ..++|+++.++|||||+|++.+...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1 2232 343322 2478999999999999999877544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-08 Score=92.34 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-C--CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-S--VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~--~~~~-D~i~~~ 262 (360)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .+|.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998765 78999998 7777766542 468999999876 2 3333 999872
Q ss_pred ------ccccc-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 263 ------WILHC-------WDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 263 ------~vlh~-------~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.++.. |+.++ ..++|+.+.+.|||||+|+..+...
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 22322 11111 1278999999999999999877544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-07 Score=80.54 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=104.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------------------------CCCcEEEecC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGN 248 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~d 248 (360)
.+...|+.+|||.......+...+++++++.+|+|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999888999999999887774321 1578999999
Q ss_pred CCC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHH
Q 018145 249 MFE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVL 316 (360)
Q Consensus 249 ~~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 316 (360)
+.+ +. . .. .++++-.+|++++.+.+.++|+.+.+.+ |+|.+++.|.+.+..+..+. ... ....+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~f-g~~-m~~~l~ 252 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRF-GAI-MQSNLK 252 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCH-HHH-HHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchH-HHH-HHHHhh
Confidence 987 22 1 22 7899999999999999999999999988 78888889988763222211 110 001111
Q ss_pred H-hhh-cCC-CccCCHHHHHHHHHHcCCc
Q 018145 317 L-MTR-DGG-GRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 317 ~-~~~-~~~-~~~~t~~e~~~ll~~aGf~ 342 (360)
. ... ..+ ....+.++..+.|.++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1 100 011 2345889999999999997
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=87.07 Aligned_cols=111 Identities=7% Similarity=0.012 Sum_probs=80.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+...|||.+||+|.++++.+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445555544 777889999999999999887765443 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+.+ +++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ ||+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888887653 369999999988 44444 99999733221 11 24556677777777766 99999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8775
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.4e-08 Score=91.27 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEEEecc-hhHHHhCCCC------C--CcE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------A--GVE 243 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~v~ 243 (360)
..+++.+. ..++.+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+.. . .+.
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34444443 4556799999999999999888764 4467888888 8887776532 2 678
Q ss_pred EEecCCCC-CCCCC-cEEEeccccccCChh---------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 244 HVGGNMFE-SVPEG-DAILMKWILHCWDDD---------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 244 ~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~---------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+..+|.+. +.... |+|+++--++..... .-..+++++.+.|||||+++++.+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999988 43334 999997655542211 123789999999999999999875
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-08 Score=90.19 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=74.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCC------CCC-cEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESV------PEG-DAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~------~~~-D~i~~~ 262 (360)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.++++ .+++++.+|+.+.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5689999999999999999998 567899998 8888877653 34899999987621 223 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
--.+..+. .....+++.+.+.|+|||.|++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 22211111 3456789999999999999998774
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.3e-07 Score=83.70 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=82.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+...|+|.+||+|.++++.+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 4445555444 777899999999999999887765443 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-C-ChhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-W-DDDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~-~~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+++ +++++..+|+.+ +.+.. |+|+++--.+. + ..++...+.+.+.+.||+ |++++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888887653 469999999988 44444 99999633221 2 235677888888888887 99999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-07 Score=86.91 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=73.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.++++ ++++++.+|+.+.....|+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4568999999999999999 77 4778999998 8888877642 4799999999874433399998421
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.....+++.+.+.|+|||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 122378999999999999999987643
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.2e-07 Score=78.81 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=63.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC--cEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG--DAI 259 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~--D~i 259 (360)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ ++++. +.+
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~ 98 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELK 98 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEE
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcE
Confidence 45566555 566789999999999999999987 4578888888 8888887764 578999999998 66542 556
Q ss_pred EeccccccCChh
Q 018145 260 LMKWILHCWDDD 271 (360)
Q Consensus 260 ~~~~vlh~~~~~ 271 (360)
++.+.=++.+.+
T Consensus 99 vv~NlPy~i~~~ 110 (249)
T 3ftd_A 99 VVGNLPYNVASL 110 (249)
T ss_dssp EEEECCTTTHHH
T ss_pred EEEECchhccHH
Confidence 666655555443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-08 Score=90.64 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=74.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C-CcEEEecCCCCCC------CCC-cEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A-GVEHVGGNMFESV------PEG-DAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~d~~~~~------~~~-D~i~~ 261 (360)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ . +++++.+|+.+.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 4558999998 8888877643 2 7899999987621 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.--.+..+. .....+++.+.+.|+|||++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 432211111 4566889999999999999988775
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-07 Score=81.39 Aligned_cols=79 Identities=10% Similarity=0.223 Sum_probs=61.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC--C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE--G 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~--~ 256 (360)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666665 567789999999999999999998 457777777 8888877653 689999999998 6665 3
Q ss_pred cEEEeccccc
Q 018145 257 DAILMKWILH 266 (360)
Q Consensus 257 D~i~~~~vlh 266 (360)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998765443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-07 Score=84.86 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCC---CCC-CcEEEecccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFES---VPE-GDAILMKWIL 265 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~---~~~-~D~i~~~~vl 265 (360)
+++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ -..++..+|+++. .+. .|+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 347899999999999999999874 34889998 8888887653 1235778888762 222 3999985322
Q ss_pred ccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 266 HCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 266 h~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
..-+. .....+++.+.+.|+|||+|++....
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11111 23357899999999999999977643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.7e-08 Score=89.35 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------C--CcEEEecCCCCCC------C-CCcEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------A--GVEHVGGNMFESV------P-EGDAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~d~~~~~------~-~~D~i 259 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+++ . +++++.+|+++.. + ..|+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999863 347899998 8888877642 2 7999999987621 1 23999
Q ss_pred Eecccc-----ccCC--hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWIL-----HCWD--DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vl-----h~~~--~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.--. .... .....++++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 983221 1111 23445688899999999999988663
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=75.55 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=65.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecch-hHHHhCCCC----CCcEEEecCCCC-CCCC--Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSY----AGVEHVGGNMFE-SVPE--GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~d~~~-~~~~--~D 257 (360)
.++.+... +++..+|||||||+|.++...++..+-..++++|+. +........ .++.....++.. .++. .|
T Consensus 64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 34555533 667789999999999999988877655555555552 221111111 134444554422 3433 39
Q ss_pred EEEeccccc---cCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 018145 258 AILMKWILH---CWDDD-HCLRILKNCYKAVPGN-GKVIV 292 (360)
Q Consensus 258 ~i~~~~vlh---~~~~~-~~~~~L~~i~~~Lkpg-G~lli 292 (360)
+|++....+ ++-|+ ....+|+.+.+.|+|| |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 999976555 11122 2235689999999999 99998
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=90.72 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=83.9
Q ss_pred hhhhhccCccHHHHHHHHHhhcchhhHHHHHhhccc---CCCcceEEEEcCCcchHHHHHHhhC----CCCeEEEecchh
Q 018145 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEG---FQNVERLVDVGGGFGVTLSMITSKY----PQIKAVNFDLPH 231 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~~~ 231 (360)
.|+.+++++-+...|.+++.. .+.+..+. ..+...|+|||||+|-++...+++. -.+++.+++...
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477888888888888776643 22222211 2345689999999998844433332 234678888744
Q ss_pred HHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEE
Q 018145 232 VVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 232 ~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
+...+++. ++|+++.+|+.+ ..|+- |+|++-..=..+-.+....+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 44444431 679999999999 78866 99987433333333445577888899999999764
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-07 Score=85.08 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=81.3
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--------------------------------------CeEE
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--------------------------------------IKAV 225 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 225 (360)
.+..++.... +.+..+|||.+||+|.++.+.+....+ .+++
T Consensus 183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 3445555444 777899999999999999988776432 5689
Q ss_pred Eecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCC-cEEEecccccc-CC-hhHHHHHHHHHHHhCCC--CcEEE
Q 018145 226 NFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEG-DAILMKWILHC-WD-DDHCLRILKNCYKAVPG--NGKVI 291 (360)
Q Consensus 226 ~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~i~~~Lkp--gG~ll 291 (360)
++|+ +.+++.|+.+ +.+++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.||+ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9998 8999988753 369999999988 44444 99999544321 12 34566778888888876 89988
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8764
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-07 Score=80.67 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCCCC---CC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFESVP---EG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~---~~-D~i 259 (360)
+++.+||-||+|.|..++++++..+..+++.+|+ |.+++.+++ .+|++++.+|...-+. +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999887778888888 888887754 2789999999988322 22 999
Q ss_pred EeccccccCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.-..=..-+.. --..+++.++++|+|||.++..-.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 873321110110 113689999999999999998643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.9e-07 Score=78.46 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=63.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---CCcEEEecCCCC-CCCC--C-c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---AGVEHVGGNMFE-SVPE--G-D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~-~~~~--~-D 257 (360)
+.+++.+. ..++ +|||||||+|.++..+++.. .+++++|+ +.+++.++++ .+++++.+|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 35556555 5666 99999999999999999986 46777776 7787766542 579999999988 6653 2 6
Q ss_pred EEEeccccccCChhHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKN 279 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~ 279 (360)
.|+. +.-++.+.+-..++|..
T Consensus 113 ~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EECSSCCHHHHHHHHHH
T ss_pred EEEe-cCcccccHHHHHHHhcC
Confidence 6555 44455665555555543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-07 Score=87.26 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=73.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------C-CcEEEecCCCCCC------CCC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------A-GVEHVGGNMFESV------PEG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~d~~~~~------~~~-D~i 259 (360)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ . +++++.+|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999874 458899998 8888877542 2 6899999987721 223 999
Q ss_pred Eecccc--------ccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 260 LMKWIL--------HCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 260 ~~~~vl--------h~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
++.--. +.. ......++..+.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGA-CRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 985211 111 13567899999999999999998663
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=82.66 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=69.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC----
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP---- 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~---- 254 (360)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ .+++|+.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34444444 456689999999999999999987 678999998 8888877642 479999999987322
Q ss_pred -C--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 255 -E--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 255 -~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
. .|+|++.--- .....+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dPPr-----~g~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDPAR-----AGAAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECCCT-----TCCHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECCCC-----ccHHHHHHHHHh-cCCCeEEEEE
Confidence 2 2999984221 112245555543 7888877763
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-07 Score=77.73 Aligned_cols=90 Identities=8% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCC---
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPE--- 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~--- 255 (360)
...+++.+. ..++.+|||||||+|.++. +. ..+..+++++|+ +.+++.++++ ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 345566555 5667899999999999999 54 455444888888 8888887664 479999999987 5432
Q ss_pred ---CcEEEeccccccCChhHHHHHH
Q 018145 256 ---GDAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 256 ---~D~i~~~~vlh~~~~~~~~~~L 277 (360)
.+.++.++.-++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444544444444333333
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.7e-07 Score=86.34 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=81.9
Q ss_pred hhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEE
Q 018145 159 IFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAV 225 (360)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~ 225 (360)
.|+.+.+++-+...|.+++... +.+......+...|||||||+|-++...+++. ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4777778888777777766442 11211111245789999999999964332221 235788
Q ss_pred Eecc-hhHHHhCCC------CCCcEEEecCCCC-CC------CC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEE
Q 018145 226 NFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV------PE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKV 290 (360)
Q Consensus 226 ~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~l 290 (360)
+++. |.++...+. .++|+++.+|+.+ .. ++ .|+|++-..=.....+-....|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 8887 433322211 1679999999998 55 44 49998865544333444567888889999999975
Q ss_pred E
Q 018145 291 I 291 (360)
Q Consensus 291 l 291 (360)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.3e-07 Score=90.27 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=72.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCC--C-CCC-cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFES--V-PEG-DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~--~-~~~-D~i~~~~ 263 (360)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++.+|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46799999999999999988853 346899998 8888877652 3799999999872 2 223 9999843
Q ss_pred c-----------cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 I-----------LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 v-----------lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
- ++. ......+++.+.+.|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1 221 23566889999999999999996553
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-06 Score=82.13 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=67.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CCcEEEecccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EGDAILMKWILHC 267 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~D~i~~~~vlh~ 267 (360)
.++.+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ . ++|+.+|+.+..+ ..|+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45679999999999999999986 457888988 8888887653 3 8999999988443 3499998433221
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.. ..+++.+. .|+|||.+++..
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred hH----HHHHHHHH-hcCCCcEEEEEC
Confidence 11 23555554 489999888853
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-07 Score=80.89 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=53.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC--CeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ--IKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~ 254 (360)
+.+++.+. ..++.+|||||||+|.++..+++..+. .+++++|+ +.+++.++++ ++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34555555 567789999999999999999998764 45777777 8888887654 679999999987 554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=76.39 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVP 254 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~ 254 (360)
..+++.+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 45566565 5677899999999999999999985 57788887 888887654 2689999999998 554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-06 Score=78.36 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=60.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C--CC-
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S--VP- 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--~~- 254 (360)
.+.+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.|+++ ++++++.+|+.+ + .+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345555555 56678999999999999999999999889999998 8888877542 589999999876 2 11
Q ss_pred ----CCcEEEec
Q 018145 255 ----EGDAILMK 262 (360)
Q Consensus 255 ----~~D~i~~~ 262 (360)
..|.|++.
T Consensus 94 ~g~~~~D~Vl~D 105 (301)
T 1m6y_A 94 LGIEKVDGILMD 105 (301)
T ss_dssp TTCSCEEEEEEE
T ss_pred cCCCCCCEEEEc
Confidence 23888874
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=4e-06 Score=73.40 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=62.6
Q ss_pred CcceEEEEcCCcchHHHHHHhh-------CCC-----CeEEEecc-h---hHHHh-----------CC------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-------YPQ-----IKAVNFDL-P---HVVQD-----------AP------------ 237 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~-----------a~------------ 237 (360)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.++. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 5679999999999988887664 674 57888886 4 22221 11
Q ss_pred --------CCCCcEEEecCCCC---CCCC----C-cEEEecc-ccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 238 --------SYAGVEHVGGNMFE---SVPE----G-DAILMKW-ILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 238 --------~~~~v~~~~~d~~~---~~~~----~-D~i~~~~-vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
...++++..+|+.+ ..+. . |+|++-. .-..-|+-.-..+|+.+++.|+|||+|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11347789999866 2322 3 9998842 11101111125789999999999999884
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-06 Score=72.29 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.2
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCC-cEEEec-CCCCCCC--
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAG-VEHVGG-NMFESVP-- 254 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-v~~~~~-d~~~~~~-- 254 (360)
...++.+.+. +++..+|||||||.|.++...++..+-.+++++|+ ......+.. ..+ +.+... |+.. ++
T Consensus 78 KL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~ 155 (282)
T 3gcz_A 78 KLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVI 155 (282)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCC
Confidence 3456666664 77888999999999999998887776667777776 333222222 112 233322 3332 22
Q ss_pred CCcEEEeccccc----cCChhHHHHHHHHHHHhCCCC--cEEEEEee
Q 018145 255 EGDAILMKWILH----CWDDDHCLRILKNCYKAVPGN--GKVIVMNS 295 (360)
Q Consensus 255 ~~D~i~~~~vlh----~~~~~~~~~~L~~i~~~Lkpg--G~lli~e~ 295 (360)
..|+|++-...+ ..+......+|.-+.+.|+|| |.+++--+
T Consensus 156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 239999976665 111112235688889999999 99988443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-06 Score=79.20 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---CC-------------
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---VP------------- 254 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~~------------- 254 (360)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998853 57889998 8888877642 4799999998651 11
Q ss_pred ---CCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 ---EGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 ---~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|++.- | ...+...+.+.|+|+|+++.+.
T Consensus 292 ~~~~fD~Vv~dP-----P---r~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDP-----P---RSGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECC-----C---TTCCCHHHHHHHTTSSEEEEEE
T ss_pred ccCCCCEEEECc-----C---ccccHHHHHHHHhCCCEEEEEE
Confidence 239998631 1 1123456667777999988775
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=70.83 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-h-------hHHHhCCCC-------CCcEEEecCCCCC---CC--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P-------HVVQDAPSY-------AGVEHVGGNMFES---VP-- 254 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~d~~~~---~~-- 254 (360)
..++.+|||+|||+|..+..+++. ..+++++|+ + .+++.++++ ++++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999986 467899998 8 778777643 4699999998762 33
Q ss_pred -C-CcEEEeccccccCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 255 -E-GDAILMKWILHCWD------------------DDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 255 -~-~D~i~~~~vlh~~~------------------~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
. .|+|++.-.+++-. +.+...+++.+.+..+ .++++-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 2 39999976555421 1123455666666654 3566655543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=79.68 Aligned_cols=111 Identities=13% Similarity=0.012 Sum_probs=75.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC------------------------------------------CC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY------------------------------------------PQ 221 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------p~ 221 (360)
.+..++.... +.+..+|||.+||+|.++.+.+... +.
T Consensus 178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 3445555444 6777899999999999998877542 23
Q ss_pred CeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC----CCcEEEecccc--ccCChhHHHHHHHHHHHh---
Q 018145 222 IKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP----EGDAILMKWIL--HCWDDDHCLRILKNCYKA--- 283 (360)
Q Consensus 222 ~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~----~~D~i~~~~vl--h~~~~~~~~~~L~~i~~~--- 283 (360)
.+++++|+ +.+++.|+.+ +.+++..+|+.+ ..| ..|+|+++=-. ..-..+....+.+.+.+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 57889998 8899887653 358999999987 333 23999997222 111233445555555444
Q ss_pred CCCCcEEEEEee
Q 018145 284 VPGNGKVIVMNS 295 (360)
Q Consensus 284 LkpgG~lli~e~ 295 (360)
+.|||+++++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 458999999864
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-06 Score=76.41 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=69.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------------------CCcEEEecCCCCC--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFES-- 252 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~d~~~~-- 252 (360)
++.+|||+|||+|..+..++++.+..+++++|+ +.+++.++++ .+++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 357999999999999999999988888999998 7777766532 1288999998662
Q ss_pred -CCC-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 -VPE-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 -~~~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+. .|+|++.- .. ....++..+.+.|||||.|++.-
T Consensus 127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 233 39998532 11 12468999999999999877754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.92 E-value=2e-05 Score=70.98 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=68.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCC-----CCcEEE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVP-----EGDAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~-----~~D~i~ 260 (360)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+|+++.+|+.+ ... ..|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4667899999999999999999885 4578999998 7777765532 479999999876 221 239998
Q ss_pred e------ccccccCCh---------hHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 261 M------KWILHCWDD---------DHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~------~~vlh~~~~---------~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+ ..++...++ +++ .++|+++.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 6 122322111 111 246778877776 89887765433
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0003 Score=63.65 Aligned_cols=143 Identities=11% Similarity=0.140 Sum_probs=102.4
Q ss_pred CcceEEEEcCCcchHHHHHHhh-CCCCeEEEecchhHHHhCC-----------------------------CCCCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDLPHVVQDAP-----------------------------SYAGVEHVG 246 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 246 (360)
+...|+-+|||.=.....+... .++++++-+|+|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4579999999999988888775 3688999999988776311 125788999
Q ss_pred cCCCC--C---------CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh
Q 018145 247 GNMFE--S---------VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL 313 (360)
Q Consensus 247 ~d~~~--~---------~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~ 313 (360)
.|+.+ . ++.. -++++-.+|.+++.++..++|+.+.+... +|.+++.|++.+.++ +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------HHHHH
Confidence 99976 1 1212 68889999999999999999999999885 567777898865431 11111
Q ss_pred hHHHhhhcCCC------ccCCHHHHHHHHHHcCCceeeEEec
Q 018145 314 DVLLMTRDGGG------RERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 314 ~~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
--... ..|. ...+.++..+.|.++||+.++..++
T Consensus 242 ~~~l~--~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLR--RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHH--TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHH--HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 10110 1121 2347788899999999999887654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.1e-05 Score=64.90 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=66.8
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----C-CCcEEEec-CCCCCCCC-Cc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----Y-AGVEHVGG-NMFESVPE-GD 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~-d~~~~~~~-~D 257 (360)
.++.+. .-+.++.+||||||++|.++..+++..+-..++++|+ ......... . +-+.+..+ |+..-.+. .|
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~D 149 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSD 149 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcC
Confidence 344444 3356789999999999999999998766556777776 222111111 0 11333333 44432222 39
Q ss_pred EEEeccccccCCh----h-HHHHHHHHHHHhCCCC-cEEEEEee
Q 018145 258 AILMKWILHCWDD----D-HCLRILKNCYKAVPGN-GKVIVMNS 295 (360)
Q Consensus 258 ~i~~~~vlh~~~~----~-~~~~~L~~i~~~Lkpg-G~lli~e~ 295 (360)
+|++-..-+ -+. + ....+|.-+.+.|+|| |.|++--+
T Consensus 150 lVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 150 TLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred EEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 999865554 221 1 2245688889999999 99998533
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.7e-05 Score=67.56 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=68.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChh
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDD 271 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~ 271 (360)
++++.++||+||++|.++..++++ +.+++++|...+-......++|+++.+|.+. ..+.. |+|++-.+.+ +.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 467899999999999999999987 5789999975444444456889999999998 33333 9999977654 33
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 272 HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 272 ~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555554444444465555554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.5e-06 Score=92.40 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=67.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC-----CeEEEecc-hhHHHhCCCC-C--CcEEEecCCCCC---CCCC-cEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ-----IKAVNFDL-PHVVQDAPSY-A--GVEHVGGNMFES---VPEG-DAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~d~~~~---~~~~-D~i~~~~ 263 (360)
+..+||+||.|+|..+..+++.... .+++..|. +...+.++++ . .++....|..++ .+.. |+|+.++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4679999999999887777766532 35777787 6666666654 1 122222233222 2233 9999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCce
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKG 343 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 343 (360)
+||.-+ +....|+++++.|||||++++.+...... ......+.... ...+....+.++|.++|.++||+.
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~---~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP---EQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc---cccCCcccCHHHHHHHHHhCCCce
Confidence 999643 55678999999999999999988643110 00000000000 000123346778999999999998
Q ss_pred eeEEe
Q 018145 344 INFAS 348 (360)
Q Consensus 344 ~~~~~ 348 (360)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 77643
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.8e-05 Score=76.85 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=74.3
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCC------------------CCeEEEecc-hhHHHhCCCC------CC-
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP------------------QIKAVNFDL-PHVVQDAPSY------AG- 241 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~------~~- 241 (360)
+++.+. ..+..+|+|.+||+|.++..+.+... ...++++|+ +.+++.|+.. ..
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 344443 45567999999999999988776532 236888888 7777766531 22
Q ss_pred ----cEEEecCCCC-C-CC--CCcEEEeccccccCC------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 242 ----VEHVGGNMFE-S-VP--EGDAILMKWILHCWD------------DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 242 ----v~~~~~d~~~-~-~~--~~D~i~~~~vlh~~~------------~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+..+|.+. + .+ ..|+|+++--+.... ...-..+++++.+.|||||++.++-+
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 7899999987 3 22 239999864433211 11123789999999999999999864
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.1e-05 Score=59.32 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC----CCcEEEeccccccCC
Q 018145 196 QNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP----EGDAILMKWILHCWD 269 (360)
Q Consensus 196 ~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~----~~D~i~~~~vlh~~~ 269 (360)
..+.+|||||||+| ..+..|++. .+..++++|+ |..++ ++..|++++.. ..|+|+..+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 44679999999999 588877764 3677888887 55544 89999999654 339998765 4
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+.+....+.++.+.. |.-++|.-.
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 566777777777765 456666443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=73.26 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=70.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-------CC-cEEEecCCCCC----CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-------AG-VEHVGGNMFES----VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~d~~~~----~~~~-D~i~ 260 (360)
.++.+|||++||+|.++..++++.++ .+++.+|+ +..++.++++ ++ ++++.+|+.+. .+.. |+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998765 57899998 8888776642 34 89999998662 1223 9998
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+.- . .. ...++..+.+.|+|||.|++..
T Consensus 131 lDP--~--g~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--F--GT--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECC--S--SC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECC--C--cC--HHHHHHHHHHHhCCCCEEEEEe
Confidence 854 1 11 1358999999999999877765
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=60.55 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=70.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC---CCC--CCcEEEec-CCCC-CCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA---PSY--AGVEHVGG-NMFE-SVPE 255 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~--~~v~~~~~-d~~~-~~~~ 255 (360)
...++.+.+. +++..+||||||++|.++...+....-.+++++|+ +.-.+.- +.. +.|+|+.+ |++. +...
T Consensus 66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 3456666664 77888999999999999997777766567899997 2222211 111 67999999 9765 3223
Q ss_pred CcEEEeccccccCChh--H---HHHHHHHHHHhCCCCcEEEE
Q 018145 256 GDAILMKWILHCWDDD--H---CLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~--~---~~~~L~~i~~~LkpgG~lli 292 (360)
.|+|+|--.=.. +.+ + ..++|.-+.++|++ |-++|
T Consensus 145 ~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 599987322211 111 1 23467777899999 77776
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=61.59 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=63.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhh--CCCCeE--EEecchhHHHhCCCCCCc---EEEec-CCCCCCC-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK--YPQIKA--VNFDLPHVVQDAPSYAGV---EHVGG-NMFESVP-E 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~--~~~D~~~~~~~a~~~~~v---~~~~~-d~~~~~~-~ 255 (360)
..+|-++. -++++.+|||+||+.|.++...++. ...+.+ ++.|+ +.........++ .|..+ |+++..+ .
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 44566655 3788999999999999999988775 211122 33342 111111111455 55557 9987333 3
Q ss_pred CcEEEecccc---ccCChhH-HHHHHHHHHHhCCCCc-EEEEEee
Q 018145 256 GDAILMKWIL---HCWDDDH-CLRILKNCYKAVPGNG-KVIVMNS 295 (360)
Q Consensus 256 ~D~i~~~~vl---h~~~~~~-~~~~L~~i~~~LkpgG-~lli~e~ 295 (360)
.|+|++-..= +..-|+. ...+|.-+.+.|+||| .+++--+
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 4999873321 1111111 2235777889999999 8887433
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.59 E-value=6.1e-05 Score=52.62 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=52.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcC-cHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPM-MLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~-~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
.+-.|++.|...||.|+.+||+.+|+ ... .+++.|..|...|+|...+...+ .|.+|+.+...
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~~ 75 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRER 75 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHTT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHhH
Confidence 35567788888899999999999999 887 99999999999999986543334 89999988643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0006 Score=61.19 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=93.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCCC----------CC-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG- 256 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~~----------~~- 256 (360)
+...||+||||-=.....+.. .++++++.+|.|.+++..++ .++..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999998877666542 12488999999988875432 3568899999876211 11
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhh-hHH-Hhh-----hcCCCcc-CC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-DVL-LMT-----RDGGGRE-RT 328 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 328 (360)
=++++-.+||++++++...+|+.+.+.+.||+.|++ |.+.++.+ .......... ... ... -..+... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 577889999999999999999999999999888776 44443321 0000000000 000 000 0001112 25
Q ss_pred -HHHHHHHHHHcCCcee
Q 018145 329 -KKEYTELAIAAGFKGI 344 (360)
Q Consensus 329 -~~e~~~ll~~aGf~~~ 344 (360)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 6789999999999987
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.5e-05 Score=70.49 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=70.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------------CCcEEEecCCCCCC------C-
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------------AGVEHVGGNMFESV------P- 254 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~~~------~- 254 (360)
++.+||=||+|.|..++++++. |..+++.+|+ |.+++.+++. +|++++.+|....+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999985 4578888888 8888877541 46899999987521 1
Q ss_pred CCcEEEecccccc-------CC-hhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 EGDAILMKWILHC-------WD-DDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 ~~D~i~~~~vlh~-------~~-~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..|+|+.-..=.. .. ..-...+++.++++|+|||.++..-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2399987421110 01 0113467899999999999988753
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00032 Score=69.92 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=67.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC---CCeEEEecc-hhHHHhC--C----C----C--CCcEEEecCCCCC--CC-C-
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP---QIKAVNFDL-PHVVQDA--P----S----Y--AGVEHVGGNMFES--VP-E- 255 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~d~~~~--~~-~- 255 (360)
.++.+|||.|||+|.++..+++..+ ..+++++|+ +.+++.| + . + ....+...|+..+ .+ .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3568999999999999999998876 357889988 7776665 1 1 1 1235556666652 12 2
Q ss_pred CcEEEecccc---ccCChh------------------------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 GDAILMKWIL---HCWDDD------------------------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~D~i~~~~vl---h~~~~~------------------------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|+++=-. ...+.. -...+++++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3999984333 111110 123478899999999999999875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.9e-05 Score=73.13 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC---------------CCeEEEecc-hhHHHhCCCC-------CCc
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP---------------QIKAVNFDL-PHVVQDAPSY-------AGV 242 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~~v 242 (360)
..+++.+. .. ..+|+|.+||+|.++..+.+..+ ...++++|+ +.+++.|+.. .++
T Consensus 235 ~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i 312 (544)
T 3khk_A 235 TLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF 312 (544)
T ss_dssp HHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC
T ss_pred HHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33444443 23 34999999999999888765432 467899998 7777776532 234
Q ss_pred EEEecCCCC-C-CCC-C-cEEEeccccc--cCChh-------------------------HHHHHHHHHHHhCCCCcEEE
Q 018145 243 EHVGGNMFE-S-VPE-G-DAILMKWILH--CWDDD-------------------------HCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 243 ~~~~~d~~~-~-~~~-~-D~i~~~~vlh--~~~~~-------------------------~~~~~L~~i~~~LkpgG~ll 291 (360)
.+..+|.+. + .+. . |+|+++=-+. .|..+ .--.+++++.+.|+|||++.
T Consensus 313 ~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 313 GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp CSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred ceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 458888876 3 232 2 9999842222 12110 11258999999999999999
Q ss_pred EEee
Q 018145 292 VMNS 295 (360)
Q Consensus 292 i~e~ 295 (360)
++-+
T Consensus 393 iVlP 396 (544)
T 3khk_A 393 LLLA 396 (544)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8864
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00085 Score=58.54 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=69.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHh---CCCC--CCcEEEec-CCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQD---APSY--AGVEHVGG-NMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~--~~v~~~~~-d~~~-~~~~~ 256 (360)
..++.+.+. +++..+||||||++|.++...+....-.+++++|+ ..-.+. .++. +-|.++.+ |++. +....
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 445666654 67778999999999999997777665557889997 221111 1111 34889988 8766 32234
Q ss_pred cEEEeccccccCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 018145 257 DAILMKWILHCWDDDH-----CLRILKNCYKAVPGN-GKVIV 292 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~-----~~~~L~~i~~~Lkpg-G~lli 292 (360)
|+|+|--. .--+.+. ..++|.-+.++|++| |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 98887433 2222221 234677778999999 88887
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=55.18 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=55.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHh--CcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcCC
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQL--QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNK 116 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~--~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~~ 116 (360)
+..|++.|.+.|+.|+.+||+.+ |+ .+..+++-|+.|...|+|+.. ..+.|++|+.+..++...
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 46688888776799999999999 99 889999999999999999974 334899999998777653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.40 E-value=4.8e-05 Score=66.43 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=51.8
Q ss_pred CCCc--ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhH-------HHhCCC-------C-CCcEEEecCCCC---CC
Q 018145 195 FQNV--ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHV-------VQDAPS-------Y-AGVEHVGGNMFE---SV 253 (360)
Q Consensus 195 ~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~d~~~---~~ 253 (360)
.+++ .+|||+|||+|..+..+++. +.+++++|. +.+ ++.++. . .+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 457999998 543 333321 1 368999999876 23
Q ss_pred CCC-cEEEecccccc
Q 018145 254 PEG-DAILMKWILHC 267 (360)
Q Consensus 254 ~~~-D~i~~~~vlh~ 267 (360)
++. |+|++.-.+++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 333 99999776655
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00051 Score=66.46 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=70.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhC---CCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC-CCC---C--CcE
Q 018145 197 NVERLVDVGGGFGVTLSMITSKY---PQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE-SVP---E--GDA 258 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~~---~--~D~ 258 (360)
.+.+|+|.+||+|.++..+.+.. +...++++|+ +.+...|+.. +++.+..+|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999888875 3567899998 7777766531 357899999987 333 2 299
Q ss_pred EEecccc-ccC------------------Ch--hHHHHHHHHHHHhCC-CCcEEEEEee
Q 018145 259 ILMKWIL-HCW------------------DD--DHCLRILKNCYKAVP-GNGKVIVMNS 295 (360)
Q Consensus 259 i~~~~vl-h~~------------------~~--~~~~~~L~~i~~~Lk-pgG~lli~e~ 295 (360)
|+++=-+ ..| ++ ..--.+++++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 9975111 011 10 001258999999999 9999998764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00069 Score=56.62 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=59.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------CCCcEEEecCCCCC-------------
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------YAGVEHVGGNMFES------------- 252 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~------------- 252 (360)
.+..+||||||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|+.+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 346899999985 55556666 45788888886 666555543 24699999996431
Q ss_pred -----------CC--C-CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 253 -----------VP--E-GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 253 -----------~~--~-~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+ . .|+|++-.-. ....+..+.+.|+|||.|++-+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 12 2 2999985421 1355666779999999885533
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=66.19 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=50.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCC-----CCcEEEe
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVP-----EGDAILM 261 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~-----~~D~i~~ 261 (360)
++.+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ .+++++.+|+.+..+ ..|+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 4689999999999999998887 468888888 8888877542 368999999987321 2399998
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=58.22 Aligned_cols=96 Identities=19% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc-hh--------------------------HHHhCCC-----
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PH--------------------------VVQDAPS----- 238 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 238 (360)
..+.+|||+|+..|..+..+++.. ++.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999988877654 4778888883 11 1111211
Q ss_pred ---CCCcEEEecCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 239 ---YAGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 239 ---~~~v~~~~~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.++|+++.||+.+. .+.. |+|++=.-.+ +.....|..+...|+|||.+++-+.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 16799999999763 3222 8887754221 2345789999999999998877443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0054 Score=61.41 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=103.2
Q ss_pred CcceEEEEcCCcchHHHHHHhhCC--------CCeEEEecchhHHHhCCC------------------------------
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYP--------QIKAVNFDLPHVVQDAPS------------------------------ 238 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 238 (360)
+...|+-+|||.=.....+...+| +++++-+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 468999999999999999988755 788999999887763211
Q ss_pred CCCcEEEecCCCC--CC----------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCc
Q 018145 239 YAGVEHVGGNMFE--SV----------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 304 (360)
Q Consensus 239 ~~~v~~~~~d~~~--~~----------~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~ 304 (360)
.++..++..|+.+ .+ ... -++++-.+|.+++.+.+.++|+.+.+ + |+|.+++.|.+.+..+..+
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378899999987 21 222 57788999999999999999999985 4 7889999898876533322
Q ss_pred hhhhhhhhhhHHHhhhc--CCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 305 SAARETSLLDVLLMTRD--GGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 305 ~~~~~~~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
. .... ...+...... ......+.++..+.|.+.||+.+...++
T Consensus 265 f-~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 F-SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp H-HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred H-HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1 1110 1111110000 0012347899999999999998776543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00049 Score=60.22 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=53.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~ 251 (360)
..+++++.+. .+++..+||.+||.|..+..+++. +.+++++|. |.+++.+++. ++++++.+|+.+
T Consensus 10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 3456677666 667789999999999999999998 778999998 8887665432 589999999876
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00065 Score=49.59 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=49.1
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.-.++.|++.| . |+.|..+||+.+|+ ++.-+.+.|+.|...|+|.+. . +.|.+++.+.
T Consensus 30 ~~~r~~Il~~L-~-~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---~-g~y~l~~~g~ 87 (96)
T 1y0u_A 30 NPVRRKILRML-D-KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---G-ERWVVTDAGK 87 (96)
T ss_dssp CHHHHHHHHHH-H-TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECTTTC
T ss_pred CHHHHHHHHHH-c-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---C-CEEEECCCch
Confidence 34466678888 5 68999999999999 889999999999999999974 3 5899988764
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00042 Score=46.91 Aligned_cols=54 Identities=9% Similarity=0.269 Sum_probs=44.8
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
+..|++.|... +++|..+||+.+|+ +...+.+.+..|...|+|.. ...++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 45677888764 38999999999999 89999999999999999986 345778764
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=46.54 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=47.8
Q ss_pred HhhChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
.+..|++.|.+.| ++|+.+||+++|+ +..-+++.|..|...|+|...+ ..++.|...+....+
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhc
Confidence 3555777887766 7999999999999 8889999999999999998754 355788777665433
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0006 Score=47.53 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=47.9
Q ss_pred HhhChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 45 IQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 45 ~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.+..|++.|...| +.|+.+||+++|+ +..-+.+.|..|...|+|...+ ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 3566778888876 8999999999999 8889999999999999998864 3456776654
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00047 Score=50.49 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=54.1
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc---cCCCceeecchhchhh
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV---SGGERLYALNPVSKYF 112 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~---~~~~~~y~~t~~s~~~ 112 (360)
.++..-.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+.. ......|.+|+.+...
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 44555567778888865568999999999999 8999999999999999999642 1222368888877543
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00084 Score=49.05 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=48.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+........|.+++.+
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 345667777777569999999999999 89999999999999999997532233357666554
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0042 Score=48.50 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=49.6
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 3567778888888789999999999999 889999999999999999985321122 3778888876554
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0022 Score=47.27 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCce
Q 018145 23 ESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL 102 (360)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~ 102 (360)
+....+++.+...+. +.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........
T Consensus 11 ~~~~~~~~~l~~~~r---------~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 11 NEVANLLKTLSHPVR---------LMLVCTLVE-GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHHHCSHHH---------HHHHHHHHT-CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHHcCCHHH---------HHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 444445555555444 445566655 68999999999999 8889999999999999998753223345
Q ss_pred eecchh
Q 018145 103 YALNPV 108 (360)
Q Consensus 103 y~~t~~ 108 (360)
|++++.
T Consensus 77 y~l~~~ 82 (102)
T 3pqk_A 77 YRLTEA 82 (102)
T ss_dssp EEECSS
T ss_pred EEECcH
Confidence 776653
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0013 Score=48.05 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
-.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 345667777777 69999999999999 8999999999999999998753222335666654
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=49.62 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
--.++.|+..|...|+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 3446678888875579999999999999 8999999999999999998742112225666654
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=48.08 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred hhChhhHhhhCCCCCHHHH----HHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEI----AAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~l----a~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+| |+.+++ ++..+.+.++.|+..|+|.+........|.+|+.|..++.
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHH
Confidence 4456677766678999999 999999 8999999999999999999754333446888888886654
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0025 Score=44.81 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=39.0
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
..|++.|...|+.|..+||+.+|+ ++.-+++.|+.|...|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 346777776678999999999999 89999999999999999985
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0036 Score=56.10 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=55.1
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE 251 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~ 251 (360)
+.+++++.+. .+++..+||..||.|..+..+++.. |+.+++++|. |.+++.++.. +|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777776 6778999999999999999999985 7899999999 8888887532 578888887754
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0025 Score=47.86 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCC--HHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 24 SYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELS--APEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t--~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
++..+++.+.+.|...++. .|.. |+.+ +.+|++.+ |+ .+..+.+.|+.|...|+|++... ..
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~-g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-r~ 80 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN-GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-QI 80 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS-SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-SS
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc-CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-Cc
Confidence 4445566666666655554 4444 5777 99999999 99 89999999999999999998542 35
Q ss_pred ceeecchhchhhhc
Q 018145 101 RLYALNPVSKYFVS 114 (360)
Q Consensus 101 ~~y~~t~~s~~~~~ 114 (360)
..|++|+.|..+..
T Consensus 81 ~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 81 TTYALTEKGMNVRN 94 (111)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECccHHHHHH
Confidence 68999999986653
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.....|++.|.+.| .|+.+||+++|+ ....+++.|..|+..|+|.... ..+-.|.++....
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-DIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-SSSCEEESCC---
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-CCCCcceeccCcc
Confidence 34556777888764 999999999999 8899999999999999999753 3455777765543
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=48.25 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=47.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.++.|+..|.. |+.|..+||+.+|+ ++.-+.+.|+.|...|+|.+........|.+|+.+.
T Consensus 22 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR-ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 34556667744 68999999999999 899999999999999999874322223488777654
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.016 Score=46.38 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=53.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..++.
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 35567888887789999999999999 899999999999999999986432222 4888888886654
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.004 Score=48.77 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=46.0
Q ss_pred hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 54 ~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
...++.|..+||+.+|+ ++..+.+.++.|...|+|.+. ....|.+|+.|..+..
T Consensus 18 ~~~~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~ 71 (142)
T 1on2_A 18 EEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGK 71 (142)
T ss_dssp HHHSSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHH
Confidence 33468999999999999 899999999999999999973 4578999999876543
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.002 Score=48.88 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.--.++.|+..|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|++++.+.
T Consensus 15 l~~~~R~~Il~~L~~-~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 15 LADPTRRAVLGRLSR-GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF 79 (118)
T ss_dssp HTSHHHHHHHHHHHT-CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hCCHHHHHHHHHHHh-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence 333456677777775 69999999999999 899999999999999999875322334688877553
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0053 Score=48.26 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=63.0
Q ss_pred ccCCchhHHhHHHHHHHHHHHhhhHHHHH----HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 12 QKKHEEEEEEEESYSHAMQLAMGVVLPMA----TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
|......+.-...+..+...+...+...+ =-+..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+
T Consensus 4 M~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le 79 (148)
T 3nrv_A 4 MQKINIDRHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLE 79 (148)
T ss_dssp -CCSCGGGCHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 33444444334444444444444433322 123456778888887789999999999999 8999999999999
Q ss_pred cCcceeecccC---CCceeecchhchhhhc
Q 018145 88 SHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 88 ~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..|+|.+.... ....+.+|+.|..++.
T Consensus 80 ~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 80 EKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HTTSEEC---------CCBEECHHHHHHHH
T ss_pred HCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 99999975321 1335788888876554
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0066 Score=47.52 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..+..
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 346667778876678999999999999 899999999999999999985322222 4888888886653
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0099 Score=51.89 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCcceEEEEcC------CcchHHHHHHhhCCC-CeEEEecchhHHHhCCCCCCcEEEecCCCC-CCCCC-cEEEecc---
Q 018145 196 QNVERLVDVGG------GFGVTLSMITSKYPQ-IKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SVPEG-DAILMKW--- 263 (360)
Q Consensus 196 ~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~~-D~i~~~~--- 263 (360)
+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+ ..... |+|++-.
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPN 180 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDP 180 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCT
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCC
Confidence 45799999996 66774 34455776 689999985544322 1 458999765 23232 9998721
Q ss_pred ---c-cccC--ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 264 ---I-LHCW--DDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 264 ---v-lh~~--~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. -+.- ...-+..++.-+.+.|+|||.|++--
T Consensus 181 tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 181 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 1 1111 11246677888999999999999853
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.004 Score=54.84 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=46.0
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|...+ +.|+.|||+++|+ +..-+.|+|..|+..|+|.+. .+++|++.+..-
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 45777777643 7999999999999 889999999999999999984 457899987543
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.028 Score=44.19 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=48.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec--ccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS--VSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~--~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..| ..++.|..+||+.+++ ++..+.+.++.|+..|+|.+. ....+. .+.+|+.|..+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 44478888 6579999999999999 899999999999999999972 111222 4678888776553
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0038 Score=43.42 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=39.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|.+.|.+.|.+|+++||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 6778888889999999999999 999999999999999999984
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=45.93 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~ 113 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45667888877679999999999999 899999999999999999986431 223588999998776
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0035 Score=44.47 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=39.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|.+.|.+.|.+|+.+||+.+++ .+.-++|-|+.|+..|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 6778888889999999999999 999999999999999999984
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.028 Score=44.29 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=52.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee--cccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC--SVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~--~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+ .....+ -.+.+|+.|..++.
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 35667777877779999999999999 89999999999999999998 432122 25888888876654
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0042 Score=53.54 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=53.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+|+ ++.-+.|.|+.|...|+|.+. .....|.+|+.+..+..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIK 216 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHH
Confidence 35556777655579999999999999 999999999999999999985 35668999999987654
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.016 Score=45.39 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=51.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.|..++.
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 4557777777679999999999999 89999999999999999998532112 24788888876553
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0071 Score=46.79 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=52.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..+..
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 45567778877679999999999999 8899999999999999999753211 224778888876653
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.023 Score=45.68 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=53.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 345667888877679999999999999 899999999999999999985322222 4788888876554
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0063 Score=44.17 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=47.9
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
|...+.. | .+..+||..+|+ +++.++..++.|...|+|.. ..+.|.+|+.|..++.
T Consensus 13 IL~~i~~-~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~----~~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACKS-G-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHTT-C-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHH
T ss_pred HHHHHHc-C-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEE----ECCeeEEChhHHHHHH
Confidence 4455554 4 899999999999 99999999999999999997 3567999999997765
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0065 Score=45.12 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cc
Q 018145 26 SHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ER 101 (360)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~ 101 (360)
..+++.+.+-|...+| ..|.. |+.+..+|++.+ |+ ++..+.+.|+.|...|+|.+..... .-
T Consensus 5 ~~~l~~l~~~~~~~IL---------~~L~~-~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVIL---------XHLTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHHH---------HHHTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHHH---------HHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 3455555555554444 34443 689999999999 99 8999999999999999999864311 12
Q ss_pred eeecchhchhhh
Q 018145 102 LYALNPVSKYFV 113 (360)
Q Consensus 102 ~y~~t~~s~~~~ 113 (360)
.|.+|+.|..+.
T Consensus 71 ~y~LT~~G~~l~ 82 (107)
T 2hzt_A 71 EYELSEYGRSLE 82 (107)
T ss_dssp EEEECTTGGGGH
T ss_pred EEEECccHHHHH
Confidence 588998876544
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0044 Score=45.96 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|...
T Consensus 27 ~r~~IL~~L~~-~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 27 NRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34556666665 68999999999999 899999999999999999874
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.02 Score=45.24 Aligned_cols=66 Identities=6% Similarity=0.057 Sum_probs=51.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 35567777877679999999999999 8999999999999999999753211 124788888876654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.022 Score=50.47 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCcceEEEEcCCcchHHHH----HHhhCCCCe--EEEecchhHHHhC------------------CC--CCC--cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSM----ITSKYPQIK--AVNFDLPHVVQDA------------------PS--YAG--VEHVGG 247 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~~~~a------------------~~--~~~--v~~~~~ 247 (360)
...-+|||+|=|+|..... +.+..|+.+ ++.++. ..++.. .. ..+ +++..|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 3457899999999976543 334567754 455542 111100 00 023 457778
Q ss_pred CCCCC---CCC--CcEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhc
Q 018145 248 NMFES---VPE--GDAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRD 321 (360)
Q Consensus 248 d~~~~---~~~--~D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (360)
|+.+. ++. .|++++-..--.- |+-.-..+++++++.++|||+|.- ++
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt------------------------- 226 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS------------------------- 226 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC-------------------------
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee-------------------------
Confidence 88662 333 2998874322111 111235789999999999998762 11
Q ss_pred CCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEE
Q 018145 322 GGGRERTKKEYTELAIAAGFKGINFASCVCNLYIME 357 (360)
Q Consensus 322 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~ 357 (360)
....+++.|+++||++.++-..+..--++.
T Consensus 227 ------aag~VRR~L~~aGF~V~k~~G~g~KReml~ 256 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSSREIGRKRKGTV 256 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEEECC---CEEEE
T ss_pred ------CcHHHHHHHHHCCCEEEecCCCCCCCceeE
Confidence 123467889999999877755443333333
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.002 Score=48.08 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=43.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|+..|.. |+.|+.+||+.+|+ ++..+.+.|+.|...|+|..........|.+++.
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 84 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGM----NLTTASANLQALKSGGLVEARREGTRQYYRIAGE 84 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 3445555655 68999999999999 8999999999999999998742112224655543
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0041 Score=49.41 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=55.2
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchh
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKY 111 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~ 111 (360)
..+|.--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+.|+.|...|+|..........|++++.+..
T Consensus 52 l~aL~~p~R~~IL~~L~~-~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~ 120 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLTS-GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA 120 (151)
T ss_dssp HHHHTSHHHHHHHHHGGG-CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHH
Confidence 455556668888888885 69999999999999 8999999999999999998753223346888876643
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0066 Score=47.02 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 4556777776678999999999999 899999999999999999985322222 4788888876654
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.023 Score=44.29 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=52.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
..++.++..|. .++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ ..+.+|+.|..++.
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 34566777787 679999999999999 89999999999999999997532112 24788888876653
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0077 Score=46.51 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC-
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG- 99 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~- 99 (360)
.+++...++++.+-|...+|... .. |+.++.||++.+ |+ .+..+.+.|+.|+..|+|++....+
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L---------~~-g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d 78 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHM---------ID-GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQV 78 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHH---------TT-SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCcHHHHHHHHcCcCHHHHHHHH---------hc-CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCC
Confidence 47788888999998887777543 33 589999999999 99 8999999999999999999864311
Q ss_pred --Cceeecchhchhhhc
Q 018145 100 --ERLYALNPVSKYFVS 114 (360)
Q Consensus 100 --~~~y~~t~~s~~~~~ 114 (360)
.-.|++|+.|..+..
T Consensus 79 ~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 79 PPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SCEEEEEECTTGGGGHH
T ss_pred CCeEEEEECHhHHHHHH
Confidence 236999999987654
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0071 Score=46.76 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=51.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 35556777777679999999999999 899999999999999999985321222 3778888776543
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.01 Score=46.50 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
+..++.++..|.. .|+.|..+||+.+|+ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..++.
T Consensus 34 ~~~~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 34 QFSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 3456778888887 679999999999999 899999999999999999985321 2224788888876554
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=53.51 Aligned_cols=54 Identities=9% Similarity=0.148 Sum_probs=39.9
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC---CCCCcEEEecCCCC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP---SYAGVEHVGGNMFE 251 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~v~~~~~d~~~ 251 (360)
...|||||.|.|.++..|++.....+++++++ +..+...+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 57899999999999999998754345666655 43333221 34789999999976
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0066 Score=47.05 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=52.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 39 ~~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 39 TQWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 46668888876679999999999999 899999999999999999985321112 4788888876543
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0084 Score=44.92 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.++...+++.+.+-|...+|. .|.. |+.+..+||+.+ ++ ++..+.+.|+.|+..|+|.+.....+
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMD---------ELFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 456667777777777665544 3444 589999999999 99 89999999999999999998643111
Q ss_pred ---ceeecchhchhhh
Q 018145 101 ---RLYALNPVSKYFV 113 (360)
Q Consensus 101 ---~~y~~t~~s~~~~ 113 (360)
-.|.+|+.|..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 2589999887654
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=45.43 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=51.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..+..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 34556777766679999999999999 89999999999999999998632122 25788888886654
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0068 Score=42.63 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=41.0
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.+..|++.|... ++.|+++|++.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 455688888764 589999999999 88 8889999999999999999753
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0064 Score=42.15 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=36.8
Q ss_pred hhhHhhhC------CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKA------GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~------g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|++.|... +|.|+.|||+.+|+ .+.-+++-|..|+..|+|.+.
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 44555544 69999999999999 778899999999999999985
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.011 Score=54.07 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------------CCCCcEEEecCCCC--C-CCCC-c
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------------SYAGVEHVGGNMFE--S-VPEG-D 257 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~-~~~~-D 257 (360)
.+++.+|||+-+|.|.=+..+++..++..++..|. +.-++..+ ...++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56789999999999999999999877777888887 43322211 11468888888765 2 2333 8
Q ss_pred EEEe----cc----c-------cccCChhHH-------HHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 258 AILM----KW----I-------LHCWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 258 ~i~~----~~----v-------lh~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
.|++ +. + .+.+..++. .++|.++.+.|||||+|+-.+-...
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 8875 22 1 122222222 3689999999999999988775553
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.043 Score=43.50 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=50.5
Q ss_pred HhhChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..| ...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 356688888 45569999999999999 88999999999999999998532111 23778888876653
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0074 Score=46.04 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=45.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
.++.|+..|.. |+.++.+||+.+|+ .+..+.+.|+.|...|++........-.|++++.
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 35567777765 68999999999999 8999999999999999998742112224655543
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=46.15 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=50.4
Q ss_pred hhChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..| ...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..+..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 45577777 55579999999999999 89999999999999999998532111 24777877775543
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.019 Score=45.10 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=51.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFV 113 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~ 113 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 446677788877789999999999999 89999999999999999998532122 2477888887654
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.026 Score=43.95 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=52.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+ |..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 345678888888666 99999999999 999999999999999999986422222 4889998886654
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0067 Score=52.25 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=48.6
Q ss_pred hChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhh
Q 018145 47 LGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYF 112 (360)
Q Consensus 47 lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~ 112 (360)
+.|++.|...+ +.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+. .++++|++++..-.+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~--~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEAL--GPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEEC--GGGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe--CCCCeEEECHHHHHH
Confidence 45677776643 7999999999999 899999999999999999984 234789998765433
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.01 Score=51.39 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=47.9
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
-+.|++.|...+ +.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ ..++.|++++..-
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~---~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLR---KKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEE---CTTSCEEECTHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE---CCCCcEEECHHHH
Confidence 345677776644 7999999999999 89999999999999999997 3467899987543
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.021 Score=45.57 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 4557777876679999999999999 89999999999999999998532112 25788888886654
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0078 Score=46.98 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=52.7
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.++++.|+..|+|++.... ..-.+.+|+.|..++.
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence 345667777776679999999999999 899999999999999999985321 1225788888876654
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0098 Score=46.36 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=51.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..+..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 4556777777678999999999999 89999999999999999998542212 24788888876653
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.005 Score=53.75 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=47.4
Q ss_pred hChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|.. .+++|+.|||+++|+ +..-+.|+|+.|+..|+|.+. .+.++|++.+.--
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 446677765 258999999999999 899999999999999999984 2347999987543
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0096 Score=44.17 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.++...+++.+.+-|...+|. .|.. |+.+..+|++.+ |+ ++..+.+.|+.|+..|+|.+.....+
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIF---------QINR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHH---------HHTT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 356777778887777766554 3333 589999999999 59 89999999999999999998643211
Q ss_pred ---ceeecchhchhhh
Q 018145 101 ---RLYALNPVSKYFV 113 (360)
Q Consensus 101 ---~~y~~t~~s~~~~ 113 (360)
-.|.+|+.|..+.
T Consensus 78 ~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 78 PPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SCEEEEEECHHHHTTH
T ss_pred CCeeEEEECccHHHHH
Confidence 2599999887554
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=45.51 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
..++...+++.+.+-|...+|.. |.. |+.+..+|++.+ |+ ++..+.+.|+.|+..|+|.+.....
T Consensus 21 ~~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 21 EQCPSREVLKHVTSRWGVLILVA---------LRD-GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp TTCTHHHHHHHHHSHHHHHHHHH---------GGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred CCCCHHHHHHHHcCCcHHHHHHH---------HHc-CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34566777777777776655433 443 689999999999 79 8999999999999999999864321
Q ss_pred C---ceeecchhchhhh
Q 018145 100 E---RLYALNPVSKYFV 113 (360)
Q Consensus 100 ~---~~y~~t~~s~~~~ 113 (360)
+ -.|.+|+.|..+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 1 2699999987654
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.037 Score=43.57 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=51.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 4457777776678999999999999 89999999999999999998532111 24778888776553
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.014 Score=46.01 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC--
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-- 99 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~-- 99 (360)
.+++...++.+.+-|...+|.. |.. |+.+..+|++.+|+ ++..+.+.|+.|+..|+|++.....
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~---------L~~-g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRD---------AFE-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHH---------HHT-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred CCcHHHHHHHhCCchHHHHHHH---------HHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3455566777777776655543 333 58999999999999 8999999999999999999864211
Q ss_pred Cceeecchhchhhh
Q 018145 100 ERLYALNPVSKYFV 113 (360)
Q Consensus 100 ~~~y~~t~~s~~~~ 113 (360)
.-.|.+|+.|..+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 23799999887554
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.01 Score=46.31 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .|.+|+.|..+..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 345667777776679999999999999 899999999999999999985321122 4788888876653
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0072 Score=46.95 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=52.5
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 346667778877678999999999999 899999999999999999985321222 3778888876553
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.014 Score=45.32 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+..
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 346667778877678999999999999 888999999999999999985421 1125778888876554
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.014 Score=44.89 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|.++||+.+|+ ++..++++|+.|...|+|.... ...+.|.++..
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-g~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-GAYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-CCCCceEeCCC
Confidence 48999999999999 9999999999999999998742 12366876643
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.064 Score=42.00 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=51.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence 5567778877679999999999999 899999999999999999985321 1125788888876543
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.015 Score=46.08 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 446677888877679999999999999 8999999999999999999853211 224778888876653
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.022 Score=45.55 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.++++.+.+... ..+++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++.
T Consensus 28 yAlr~L~~LA~~---~~~~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 88 (159)
T 3lwf_A 28 YGLTITLELAKR---IGDGPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR-GAHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHT---TTSCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred HHHHHHHHHHhc---CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence 444444444321 22348999999999999 9999999999999999999753 3456787663
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.077 Score=40.87 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=49.9
Q ss_pred hhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
++.++..|...+ +.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. .+.+|+.|..+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 455677777665 7999999999999 899999999999999999985421122 577888776554
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.012 Score=46.95 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=53.0
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|...|+.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....+.+|+.|..++.
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 121 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD 121 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 345667888887779999999999999 899999999999999999985321 1224788888876553
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.016 Score=45.30 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc---CCCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS---GGERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~---~~~~~y~~t~~s~~~~~ 114 (360)
..++.|+..|...| .|..+||+.+|+ ++..+.+.++.|+..|+|.+... ...-.+.+|+.|..+..
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~ 106 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE 106 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence 34666778888765 999999999999 89999999999999999997532 12235777877765543
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.045 Score=43.39 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=51.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 119 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP 119 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence 3455777766679999999999999 89999999999999999998643222 25788888876654
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.015 Score=41.82 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=51.1
Q ss_pred hhChhhHhhhCCCCCHHHHHH-HhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAA-QLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~-~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+..|+-.|.+.|+.|+.+||+ .+++ +...+.|-++.|...|+|+. .+++ +.+|+.|..++.
T Consensus 18 QfsiL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHHH
Confidence 455677787778999999999 9999 89999999999999999983 2334 999999987664
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.016 Score=46.16 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ....|.+|+.|..++.
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 35667888877679999999999999 899999999999999999974311 1134778888876553
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.025 Score=44.82 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=45.9
Q ss_pred HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 52 IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 52 ~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.|...|+.|..+||+.+|+ ++..+.+.|+.|...|+|.+. .+..+.+|+.|..+.
T Consensus 48 ~l~~~~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~---~~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMI---PWRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEE---TTTEEEECHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEe---cCCceEEChhHHHHH
Confidence 4444468999999999999 899999999999999999973 456788998887654
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=43.43 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=40.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 35556667765569999999999999 999999999999999999975
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.057 Score=41.59 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
.++.++..|...| +.|..+||+.+++ ++..+.+.++.|+..|+|++..... .-.+.+|+.|..+..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 3555677777654 8999999999999 8999999999999999999864322 224778888876654
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.019 Score=41.50 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred hhhHhhhCC-CCCHHHHHHHhCcCCCCCcCc-HHHHHHHHhcCcceeeccc-CCCceeecchhchhhhc
Q 018145 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMM-LDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~-~~~~L~~L~~~g~l~~~~~-~~~~~y~~t~~s~~~~~ 114 (360)
++..|...| +.|..+||+.+++ ++.. +.+.++.|+..|+|..... ...-.+.+|+.|..+..
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 455555555 7999999999999 8889 9999999999999984321 12235788888876653
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.071 Score=51.40 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=68.7
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-------------CCCeEEEecc-hhHHHhCCCC------CCcEEE
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-------------PQIKAVNFDL-PHVVQDAPSY------AGVEHV 245 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~~v~~~ 245 (360)
..+++.+. ...+.+|+|-.||+|.+.....+.. ....+.++|+ +.+...|+-. +.-.+.
T Consensus 207 ~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~ 285 (530)
T 3ufb_A 207 RFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID 285 (530)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred HHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence 33444444 4556799999999999988765532 1245788887 6666665421 334677
Q ss_pred ecCCCC-CCC------CCcEEEecccccc---------CC-----hhHHHHHHHHHHHhCC-------CCcEEEEEee
Q 018145 246 GGNMFE-SVP------EGDAILMKWILHC---------WD-----DDHCLRILKNCYKAVP-------GNGKVIVMNS 295 (360)
Q Consensus 246 ~~d~~~-~~~------~~D~i~~~~vlh~---------~~-----~~~~~~~L~~i~~~Lk-------pgG~lli~e~ 295 (360)
.+|.+. +.. ..|+|+.+=-+-. ++ .+.-..+++++.+.|| |||++.++-+
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 888775 321 1399998533311 10 1122356888888887 6999999865
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.02 Score=44.41 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
.++.|..+||+.+|+ ++..+.+.++.|+..|+|.+. . ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence 358999999999999 899999999999999999973 3 6799999887553
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.024 Score=42.71 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=40.9
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
-.++.|+..|.+ ++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 346667777777 68999999999999 999999999999999999864
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.02 Score=45.27 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++.+.+... .+++.|.++||+.+++ ++..++++|..|...|+|.... +.+.|.++...
T Consensus 15 yAl~~L~~La~~----~~~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G~GGy~L~~~p 75 (149)
T 1ylf_A 15 IAVHILSILKNN----PSSLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHHS----CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--CCCceEeCCCh
Confidence 455555555432 2248999999999999 9999999999999999998753 26678776543
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.038 Score=43.26 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=43.6
Q ss_pred hhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 45567777665 69999999999999 88999999999999999997532112 24678888776554
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.036 Score=44.48 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=46.5
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+++++...+..- .+++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++...
T Consensus 13 yAlr~l~~La~~----~~~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~p 74 (162)
T 3k69_A 13 VAVHSILYLDAH----RDSKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV-GKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHHTT----TTSCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC-STTCEEECCSCG
T ss_pred HHHHHHHHHHhC----CCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec-CCCCCeEecCCh
Confidence 455555544432 2248999999999999 9999999999999999998653 345678877543
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.019 Score=45.24 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=52.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhcC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVSN 115 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~~ 115 (360)
.++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..+...
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 35667778877679999999999999 899999999999999999985321 11258888888866543
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.015 Score=50.69 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred hChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 47 LGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 47 lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
+.|++.|.. .++.|+.|||+++|+ +..-+.|+|+.|+..|+|.+. ..+.|++++..-
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSR---ADGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCeEEecHHHH
Confidence 445666653 358999999999999 899999999999999999984 333899987543
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.046 Score=42.83 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHhhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...+ ++|..+||+.+++ ++..+.++++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 34566777776443 7899999999999 899999999999999999985321222 3778888876654
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=46.48 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=53.1
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhcC
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVSN 115 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~~ 115 (360)
..++.++..|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... ..-.+.+|+.|..++..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 345667777776678999999999999 899999999999999999985321 12247888888866543
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=43.04 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=43.4
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.++.|+..|...|+.|+.+||+.+|+ .+..+.+.|+.|... ++........-.|++++.+
T Consensus 28 ~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 28 MRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence 44556644433368999999999999 899999999999999 9986422222356666543
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.031 Score=43.85 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++.|.++||+.+++ ++..++++|..|...|+|.... ..++.|.++..
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR-GAKGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS-SSSSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC-CCCCCeeecCC
Confidence 38999999999999 9999999999999999998643 23467877643
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.023 Score=45.63 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=50.9
Q ss_pred HhhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.++..|.. .++.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 35667777876 468999999999999 99999999999999999998532112 25788888876654
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=94.76 E-value=0.012 Score=45.14 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=50.7
Q ss_pred hhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC---Cceeecchhchhhhc
Q 018145 46 QLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG---ERLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~---~~~y~~t~~s~~~~~ 114 (360)
++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+..... .-.+.+|+.|..++.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45566777665 68999999999999 8899999999999999999853222 224778888876554
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.02 Score=49.76 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=48.5
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ +++.|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~----~~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAG----SGGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----CCCEEEEcHHHHHHH
Confidence 4566777643 48999999999999 89999999999999999997 348999988765443
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=42.06 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 59 LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 59 ~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
.|..+||+.+++ ++..+.++++.|+..|+|..........|.+|+.|..+..
T Consensus 31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHH
Confidence 899999999999 8999999999999999994321112235899998886653
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.03 Score=47.21 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=46.0
Q ss_pred hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 55 KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 55 ~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
..++.|..+||+.+++ ++..+.+.++.|...|+|.+. ....+.+|+.|..+..
T Consensus 17 ~~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVS 69 (214)
T ss_dssp SCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHH
Confidence 3469999999999999 899999999999999999983 4468999999986653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.032 Score=49.52 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=39.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS 238 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 238 (360)
+...++..+. .++..|||++||+|.++.+.++. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 3455555543 45679999999999999988776 467899998 888887764
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.13 Score=42.19 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=54.5
Q ss_pred HHHhhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 43 AAIQLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 43 ~a~~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
+..++.++..|.. .|+.|..+||+.+++ ++..+.++++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 4556777788875 358999999999999 89999999999999999998643222 35889999886654
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.09 Score=42.08 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=49.0
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..++.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 456667777763 49999999999999 889999999999999999986432222 4778888876654
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.022 Score=49.77 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=46.5
Q ss_pred hhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 46 QLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 46 ~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
-+.|++.|.. .++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.+ +++.|++++..
T Consensus 23 ~l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~----~~~~Y~Lg~~~ 79 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVAT----DGSAFWLTPRV 79 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE----SSSEEEECGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe----cCCEEEEcHHH
Confidence 3456676654 248999999999999 89999999999999999997 35889998754
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=94.13 E-value=0.024 Score=39.65 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=39.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|++.|...++.|+.+|++.++...+-.+.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 355677777766799999999999730000567899999999999999985
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.06 Score=38.86 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~t~~s~~~~ 113 (360)
++.+..+||+.+++ +...+.|.|..|...|+|.+.... .-+...+|+.|+.++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 58899999999999 999999999999999999985431 122456777776554
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.093 Score=41.36 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred hhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++-.|... ++.+..+||+.+++ ++..+.++++.|+..|+|.+.....+. ...+|+.|..++.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 34455666543 36788999999999 999999999999999999986543333 4778888876654
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.054 Score=42.49 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=47.0
Q ss_pred hhhHhh--hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~--~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++..|. ..|+.|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..++.
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 444443 2358999999999999 999999999999999999986542222 3778888876653
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.06 Score=42.09 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=40.8
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887789999999999999 89999999999999999985
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.064 Score=42.23 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=41.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...|+.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567788877779999999999999 89999999999999999986
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.033 Score=45.34 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=49.9
Q ss_pred HhhChhhHhhhCCC---CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~---~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.++.|+..|...++ .|..+||+.+++ ++..+.+.++.|+..|+|.+.....+ -.+.+|+.|..++.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 35567777876543 899999999999 88899999999999999997532111 24778888876553
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.043 Score=41.75 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhChhhHhhhCC-C-CCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG-E-LSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g-~-~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|+..|...+ | .|+.+||+.+++ +..-+.|.|+.|...|+|.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 556777777654 4 899999999999 999999999999999999974
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.025 Score=41.29 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=39.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|-+.|+.|+.||++.++...+-.+.-+.++|+-|+..|+|.+.
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 56677777766799999999999851001456799999999999999985
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.038 Score=46.22 Aligned_cols=65 Identities=14% Similarity=-0.034 Sum_probs=51.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...++.|..+||+.+++ ++..+.++++.|+..|+|.+.....+. .+.+|+.|..++.
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 4556777776679999999999999 899999999999999999985321112 6789999886654
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.056 Score=42.53 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=41.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+.+|+ ++..+.+.++.|...|++.+
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 35668888887779999999999999 89999999999999999985
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.057 Score=40.03 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.7
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|...| +.|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 445666664335 8999999999999 899999999999999999863
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.084 Score=43.93 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=49.2
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecchhch
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNPVSK 110 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~~s~ 110 (360)
++..-.++.|+..|.. ||.|..+||+.+|+ ++..+.+.|+.|...|+|..... ...-.|++|+.+.
T Consensus 11 aL~~~~rl~IL~~L~~-~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHSHHHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 3334455666667765 69999999999999 89999999999999999997532 1122577776543
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.063 Score=36.43 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=45.3
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
+-.|++.|.+.| |+++.+||+++|+ +..-+...|..|-..|.|..+ ..-+|+++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 456777887765 9999999999999 889999999999999999874 44567665
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.076 Score=42.42 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=41.1
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|.+.++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 34567888887789999999999999 89999999999999999986
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.069 Score=41.88 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
.+++++.+.+..- . ++ |.++||+.+++ ++..++++|..|...|+|.... +.+.|.++...
T Consensus 9 ~yAl~~L~~La~~----~-~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G~GGy~Lar~p 68 (145)
T 1xd7_A 9 AVAIHILSLISMD----E-KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--GVPGASLKKDP 68 (145)
T ss_dssp HHHHHHHHHHHTC----S-CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--SSSSCEESSCG
T ss_pred HHHHHHHHHHHhC----C-CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--CCCCceecCCH
Confidence 3455555544321 2 25 99999999999 9999999999999999998753 26678776543
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.031 Score=42.33 Aligned_cols=62 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhC----cCCCCCcCcHHHHHHHHhcCcceeecccCCCce---eecchhchhhh
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECSVSGGERL---YALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~----~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~---y~~t~~s~~~~ 113 (360)
++.|+..|...++.|..+||+.++ + .+.-+.++|+-|+..|+|.+... +.+ +.+|+.+..+.
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~--~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKD--NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEE--TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEec--CCeEEEEEecCHHHHHH
Confidence 344566665556999999999999 5 68889999999999999998632 332 34666665443
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.091 Score=35.73 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=40.5
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
.++.|..++..|+.+||+++|+ +..-+.|.|.-|...|+|.... ..+-.|..+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~-~~PP~W~~~ 72 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP-SNPPKWFKN 72 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-CSSCEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC-CCCCCccCC
Confidence 3446666545999999999999 8888999999999999998643 233345443
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.32 Score=36.47 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhC--------cCCCCCc-CcHHHHHHHHhcCcceeecccC----CCceeecch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQ--------AQNVKAP-MMLDRMLRLLVSHRVLECSVSG----GERLYALNP 107 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~--------~~~~~~~-~~~~~~L~~L~~~g~l~~~~~~----~~~~y~~t~ 107 (360)
+....++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+.|+..|+|+..... ....|++|+
T Consensus 10 ~~~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 444556667777876 5999999999983 6 77 8899999999999999876321 112689999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|...+.
T Consensus 85 ~G~~~l~ 91 (118)
T 2esh_A 85 QGKLYLR 91 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986543
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.1 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=41.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 34567888888789999999999999 89999999999999999985
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.13 Score=40.42 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=50.5
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeeccc--------CCCceeecchhchhhh
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVS--------GGERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~--------~~~~~y~~t~~s~~~~ 113 (360)
.++-|++.|... +..|+++|++.++ + ...-+.+.|+.|+..|+|..... .....|++|+.|..++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 455566666543 3579999999999 8 88899999999999999995421 0112799999998766
Q ss_pred cC
Q 018145 114 SN 115 (360)
Q Consensus 114 ~~ 115 (360)
..
T Consensus 106 ~~ 107 (151)
T 3u1d_A 106 RA 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.086 Score=41.56 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|+..|.+.++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 10 d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 4567888887789999999999999 89999999999999999986
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.091 Score=41.35 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=41.2
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|+..|...++.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 35567888888789999999999999 89999999999999999985
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.078 Score=41.79 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|++.|.+.|+.|..+||+++|+ ++..+.+.++.|...|++.+
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 4567888887789999999999999 89999999999999999985
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.092 Score=41.98 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=42.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|++.|.+.|+.|..+||+++|+ .+..+.+-++.|...|++.+
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678899988889999999999999 89999999999999999985
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.11 Score=44.16 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
++.|..++|+++++ .+..+.+.++.|+..|+|.+........+.+|+.|..+..
T Consensus 26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 36899999999999 9999999999999999999842222567999999987764
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.085 Score=40.91 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|+..|...++.|..+||+.+|+ ++..+.+.|+.|...|++.+
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 4557777877678999999999999 89999999999999999985
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=92.00 E-value=0.37 Score=37.26 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=36.6
Q ss_pred hhhHhh-hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIA-KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~-~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++..|. ..++.|..+||+.+|+ ++..+.+.|+.|+..|+|.+.
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 444553 2368999999999999 899999999999999999985
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=91.98 E-value=0.1 Score=38.08 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|..+||+.+|+ +..-+.+.|+.|...|+|.+.
T Consensus 34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 468999999999999 899999999999999999974
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=91.29 E-value=0.19 Score=41.39 Aligned_cols=49 Identities=10% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
....+..|+..|.. |+.|..+||+.+|+ .+..+.+.++.|...|+|.+.
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34556778888885 79999999999999 899999999999999999975
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.13 Score=39.25 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..|.++||+.+|+ ++.-+.+.++.|...|+|.+.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999984
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.39 Score=35.98 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=53.3
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHh------CcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t~ 107 (360)
.+++-.+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+.... .....|++|+
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 34445556666667776 599999999998 67 78899999999999999997532 1122599999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+..+.
T Consensus 81 ~G~~~l~ 87 (117)
T 4esf_A 81 AGRQELE 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986654
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.13 Score=36.73 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=39.4
Q ss_pred hhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++.|+..|...| +++..+||+++++ +..-+.++|+.|+..|+|.+.
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 455677777633 8999999999999 999999999999999999953
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.17 Score=41.78 Aligned_cols=38 Identities=29% Similarity=0.224 Sum_probs=33.0
Q ss_pred hhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 53 IAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 53 L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+.+.| |.|..|||+.+|+ ....+.+.|+.|+..|++.+
T Consensus 18 ~~~~g~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHhCCCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 33334 8999999999999 66689999999999999997
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=1.1 Score=39.92 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred ceEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCCcEEEeccccccCChhHHH
Q 018145 199 ERLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEGDAILMKWILHCWDDDHCL 274 (360)
Q Consensus 199 ~~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~D~i~~~~vlh~~~~~~~~ 274 (360)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ....+|+|+++ .++....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHHH
Confidence 6899999874 344555555544347888887 5566655433222222233332 23345999886 3556677
Q ss_pred HHHHHHHHhCCCCcEEE
Q 018145 275 RILKNCYKAVPGNGKVI 291 (360)
Q Consensus 275 ~~L~~i~~~LkpgG~ll 291 (360)
.+++.+...++||..++
T Consensus 109 ~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVT 125 (314)
T ss_dssp HHHHHHHHHSCTTCEEE
T ss_pred HHHHHHhhccCCCcEEE
Confidence 88999999999987544
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.21 E-value=0.07 Score=39.51 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHhhChhhHhhhCCCCCHHHHHHHh----CcCCCCCcCcHHHHHHHHhcCcceeecccCCCc----eeecchhchhhh
Q 018145 42 QAAIQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER----LYALNPVSKYFV 113 (360)
Q Consensus 42 ~~a~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~----~y~~t~~s~~~~ 113 (360)
.-..++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|+..|+|++.....++ .|++|+.|+..+
T Consensus 7 ~g~l~~~IL~~L~~-~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 7 ALLIEYLILAIVSK-HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHHH-SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 34455666777777 588888888775 77 888999999999999999985321122 499999998655
Q ss_pred c
Q 018145 114 S 114 (360)
Q Consensus 114 ~ 114 (360)
.
T Consensus 82 ~ 82 (108)
T 3l7w_A 82 V 82 (108)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=90.07 E-value=0.054 Score=46.11 Aligned_cols=66 Identities=8% Similarity=0.158 Sum_probs=50.6
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC-C-----Cceeecchhch
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-G-----ERLYALNPVSK 110 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~-----~~~y~~t~~s~ 110 (360)
++.--.++.|+..|.. ||.|..+||+.+|+ .+..+.+.|+.|...|+|...... . ...|++++.+.
T Consensus 8 aL~~~~R~~IL~~L~~-g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 8 ILGNKVRRDLLSHLTC-MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHTSHHHHHHHHHHTT-TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 3444456678888876 69999999999999 889999999999999999972111 1 22588887664
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.49 Score=35.34 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=54.0
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceee
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYA 104 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~ 104 (360)
.++++-..++=|+..|.. +|.+.-+|.+.+ ++ ++..+...|+-|+..|+|+.... .....|+
T Consensus 6 ~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred HHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 345555566667777776 599999999887 56 78889999999999999997521 1122599
Q ss_pred cchhchhhhc
Q 018145 105 LNPVSKYFVS 114 (360)
Q Consensus 105 ~t~~s~~~~~ 114 (360)
+|+.|+..+.
T Consensus 81 LT~~G~~~l~ 90 (116)
T 3f8b_A 81 LTEIGHENMR 90 (116)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999986553
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.17 Score=43.64 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=51.7
Q ss_pred HhhChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...+ +.|..+||+.+++ ++..+-++++-|+..|+|.+.....+. ...+|+.|..++.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 4556777777643 5899999999999 899999999999999999997543333 4677888876554
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.26 Score=37.03 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhC------cCCCCCcCcHHHHHHHHhcCcceeeccc-----CCCceeecc
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVS-----GGERLYALN 106 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~~~~~L~~L~~~g~l~~~~~-----~~~~~y~~t 106 (360)
.+++.-..++-|+..|.. +|.+.-+|++.+. + ++..+...|+.|...|+|+.... .....|++|
T Consensus 8 ~~l~~g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 8 ERILHGLITLYILKELVK-RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHhhHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 345556666777778876 5999999999886 6 67889999999999999997532 011269999
Q ss_pred hhchhhhc
Q 018145 107 PVSKYFVS 114 (360)
Q Consensus 107 ~~s~~~~~ 114 (360)
+.|+..+.
T Consensus 83 ~~G~~~l~ 90 (117)
T 3elk_A 83 DAGKKFLC 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986654
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.26 Score=38.10 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=40.4
Q ss_pred HhhChhhHhhh-CCCCCHHHHHHHhC----cCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAK-AGELSAPEIAAQLQ----AQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~-~g~~t~~~la~~~~----~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|.. .++.|..+|++.++ + ++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45667777876 47999999999998 6 778899999999999999985
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=89.62 E-value=0.26 Score=35.85 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=38.7
Q ss_pred HHHHHhhChhh-HhhhCCCC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFE-IIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd-~L~~~g~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+.-.++..|.+ .+..+..+ |..+||+.+|+ ...-+++-|+.|...|+|...
T Consensus 16 l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 16 VATHFRTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 33444445555 34443355 99999999999 888999999999999999874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=89.26 E-value=0.43 Score=41.63 Aligned_cols=97 Identities=11% Similarity=-0.027 Sum_probs=68.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCCC----CC---CCcEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFES----VP---EGDAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~~----~~---~~D~i~~~~vl 265 (360)
+..+||+=+|||.++.+.++ +.-+++.+|. +..++..+++ .+++++..|.+.. .| ..|+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999999 3477888888 6666554443 5799999997651 12 23999884332
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCcEEEEEeeecC
Q 018145 266 HCWDDDHCLRILKNCYK--AVPGNGKVIVMNSIVP 298 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~--~LkpgG~lli~e~~~~ 298 (360)
.. .++..++++.+.+ .+.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 21 1245566666665 4568999999887764
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=89.07 E-value=0.26 Score=41.84 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 60 SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 60 t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+..+||+.+++ ++..+.+.|+.|+..|+|++. .+..+.+|+.|..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA---GDRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHHH
Confidence 44999999999 889999999999999999984 4467899999876643
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=88.91 E-value=0.64 Score=39.42 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=43.6
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.-|.-.|.. |+.|.++||+.+|+ +++-+...|.-|...|+|.+ ..++...+..
T Consensus 168 ~~l~~~l~~-~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN-GRATVEELSDRLNL----KEREVREKISEMARFVPVKI---INDNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS-SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE---ETTTEEEECH
T ss_pred HHHHHHHhc-CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE---ecCCeEEecH
Confidence 455566666 69999999999999 99999999999999999986 3566665553
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=6.8 Score=30.31 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=52.3
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-C------CCCCcEEEecccc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S------VPEGDAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~------~~~~D~i~~~~vl 265 (360)
.....+|+=+|+|. |......+... +.+++++|. ++.++.++...++.++.+|..+ + ....|+|+..-
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 34567899998864 33333333333 457888886 6666666523456777777654 1 11238887753
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+++.....+..+.+.+.|..+++.
T Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233344455555666666665554
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=0.25 Score=46.80 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=51.5
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
-+..|+..|.+. +++|..+||+.+++ ++..+-|+++-|+..|+|.+.....+. ...+|+.|+.++
T Consensus 405 ~q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 405 EEIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 356677888776 78999999999999 999999999999999999986542222 466777776544
|
| >3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A | Back alignment and structure |
|---|
Probab=88.73 E-value=0.64 Score=30.69 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=39.5
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+-.|++.|...||.++-.||+.+|++ ...-+.+.|..|...|+|..+
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 44588889888999999999999993 333489999999999999763
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.24 Score=38.80 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=41.2
Q ss_pred hChhhHhhhC-----CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 47 LGVFEIIAKA-----GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 47 lglfd~L~~~-----g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|... ...+. ...+|+.|..++.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~-~~~DrR~~~v~LT~~G~~~~~ 106 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM-AGADARCKRIELTAKGRAALQ 106 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee-CCCCCCeeEEEECHHHHHHHH
Confidence 3445555432 36899999999999 999999999999999999542 11212 4677777775543
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.58 E-value=0.38 Score=36.77 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeec
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYAL 105 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~ 105 (360)
.+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 355677788888754 489999999999 66 777899999999999999976432 2235654
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=88.57 E-value=0.19 Score=37.93 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=40.3
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|+..|-..||.|..+||+.++...+-++.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677777776799999999999741001577899999999999999985
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=88.32 E-value=0.57 Score=39.55 Aligned_cols=50 Identities=10% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+.+..+||+.+++ ++..+.+.++.|...|+|.+ .....+.+|+.|+.+..
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHHH
Confidence 3356999999999 88999999999999999998 34567999999886543
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=88.20 E-value=0.31 Score=38.13 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=51.8
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecch
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 107 (360)
+..-.++-|+..|.. +|.+.-+|++.+ ++ .+..+.+.|+-|+..|+|.+.... ....|.+|+
T Consensus 38 ~~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344456666677766 589999998888 57 788999999999999999875321 123699999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+.++.
T Consensus 113 ~G~~~l~ 119 (145)
T 1xma_A 113 EGIKYYK 119 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986643
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.6 Score=36.37 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeecc
Q 018145 43 AAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYALN 106 (360)
Q Consensus 43 ~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~t 106 (360)
+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|...
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 44556688888653 489999999999 55 677899999999999999976421 23357653
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=87.94 E-value=0.59 Score=34.92 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHhhChhhHhhhCCCCCHHHHHHHh------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecch
Q 018145 39 MATQAAIQLGVFEIIAKAGELSAPEIAAQL------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNP 107 (360)
Q Consensus 39 ~~l~~a~~lglfd~L~~~g~~t~~~la~~~------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~ 107 (360)
++++-.+++=|+..|.. +|.+.-+|++.+ ++ ++..+...|+-|+..|+|+..... ....|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR-KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 44444555666777776 599999999998 56 788899999999999999975311 112599999
Q ss_pred hchhhhc
Q 018145 108 VSKYFVS 114 (360)
Q Consensus 108 ~s~~~~~ 114 (360)
.|+..+.
T Consensus 83 ~G~~~l~ 89 (116)
T 3hhh_A 83 SGEAELA 89 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986654
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.50 E-value=0.78 Score=29.00 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchh
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPV 108 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~ 108 (360)
++|+.|+|...|+ +.+..+.-|+.|-+.|-+. +...+|++.|-
T Consensus 18 GMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LR----KRsSRYrlkph 60 (68)
T 3i71_A 18 GMTAGEVAAHFGW----PLEKARNALEQLFSAGTLR----KRSSRYRLKPH 60 (68)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE----EECCEEEECC-
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHhcchhh----hhccccccCcc
Confidence 7999999999999 8888899999999999998 57789987753
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=87.46 E-value=0.22 Score=40.60 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=47.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhC-cCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhch
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQ-AQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSK 110 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~-~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~ 110 (360)
=.++.|+..|.. |+.|+.+|++.++ + ++..+.+.|+.|...|+|+..... ....|++++.+.
T Consensus 23 P~Rl~il~~L~~-~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 23 PLRWRITQLLIG-RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 357778888876 6999999999996 8 778899999999999999753211 123577776554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.40 E-value=0.56 Score=40.50 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=38.0
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP 237 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 237 (360)
+...++..+. .++..|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4455665543 45689999999999999887776 568899998 77777654
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=87.13 E-value=0.44 Score=36.79 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
+-.|.+.|. .|+.|..+||+++|+ ....++-.|..|+..|+|.+.....-..+++
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L 67 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVAFGNVALVCL 67 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEEETTEEEEES
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEEEccEEEEEe
Confidence 345677887 589999999999999 8889999999999999999864322234544
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=86.89 E-value=0.66 Score=37.57 Aligned_cols=64 Identities=9% Similarity=0.300 Sum_probs=48.9
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHh--------CcCCCCCcCcHHHHHHHHhcCcceeecccC-----CCceeecchhchh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQL--------QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-----GERLYALNPVSKY 111 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~--------~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-----~~~~y~~t~~s~~ 111 (360)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|...|+|+..... ....|++|+.|+.
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 35557777776 699999999998 56 778899999999999999975321 1236999999975
Q ss_pred hh
Q 018145 112 FV 113 (360)
Q Consensus 112 ~~ 113 (360)
.+
T Consensus 78 ~l 79 (179)
T 1yg2_A 78 AL 79 (179)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.81 E-value=2.5 Score=33.07 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecch-hHHHhCCCCCCcEEEecC
Q 018145 170 NETYHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLP-HVVQDAPSYAGVEHVGGN 248 (360)
Q Consensus 170 ~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d 248 (360)
...|-+.|...... .++.+..+.+. ..-|||+|=|+|..=-.+.+.+|+.+++++|.. ..-..+.. +.=.++.||
T Consensus 16 LDsfirRltaQR~~-L~~a~~~v~~~--~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P-~~e~~ilGd 91 (174)
T 3iht_A 16 LDLFIDRMVSQRAC-LEHAIAQTAGL--SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTP-PEAQLILGD 91 (174)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTTC--CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCC-CGGGEEESC
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCC--CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCC-chHheeccc
Confidence 44555555433322 23445555433 357999999999999999999999999999941 11000100 234577777
Q ss_pred CCCCCCC-----C-cEEEe--ccccccCChhHHHHH----HHHHHHhCCCCcEEEEEeee
Q 018145 249 MFESVPE-----G-DAILM--KWILHCWDDDHCLRI----LKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 249 ~~~~~~~-----~-D~i~~--~~vlh~~~~~~~~~~----L~~i~~~LkpgG~lli~e~~ 296 (360)
+.+..+. + .+.+. -.-.|+ .++-... =.-+..+|.|||.++...+.
T Consensus 92 i~~tL~~~~~r~g~~a~LaHaD~G~g~--~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 92 IRETLPATLERFGATASLVHADLGGHN--REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp HHHHHHHHHHHHCSCEEEEEECCCCSC--HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred HHHHHHHHHHhcCCceEEEEeecCCCC--cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 7653221 1 22222 222222 2222222 23455678899988876655
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=86.79 E-value=0.54 Score=38.71 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~ 113 (360)
+|.+..+||+.+|+ .++-++..++.|...|+|+.. . +...+|+.|..++
T Consensus 29 ~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence 48999999999999 899999999999999999973 3 7889999998654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=86.69 E-value=0.97 Score=41.40 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-------CCCeEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDL 229 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~ 229 (360)
.+.+.+|+|+|+|+|.++..+++.. ..++++.++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3446789999999999999888753 3457888887
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=86.67 E-value=0.33 Score=35.38 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=35.5
Q ss_pred ChhhHhhhCCCC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGEL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|+..|..++.+ |..+||+.+|+ ...-+++-|+.|...|+|...
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334445443345 99999999999 888999999999999999974
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=0.52 Score=42.18 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=45.2
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+..|++.|...++.|.++||+.+|+ .+..++|-|+.|...|++... ..+..|++.+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~--~~g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECSS
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEE--ecCCCcEEee
Confidence 3456777776568999999999999 999999999999999998653 2444787754
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=86.34 E-value=0.14 Score=46.50 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=0.0
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
.+..++..|...++.|..+||+.+|+ ++.-++|.|+.|...|+|.+ ......+|+.|+.+...
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~----~~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEP----SKSGMTLTERGLEVYQG 83 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE----EecceEEcHHHHHHHHH
Confidence 45667777877679999999999999 89999999999999999984 22447788888766643
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=86.17 E-value=3.1 Score=36.18 Aligned_cols=88 Identities=13% Similarity=0.062 Sum_probs=51.9
Q ss_pred ceEEEEcCCcc--hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHH
Q 018145 199 ERLVDVGGGFG--VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 199 ~~vLDiG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~ 275 (360)
.+|.=||+|.= .++..+.+..+..+++++|. ++..+.+.+.........|..+.....|+|+++ .+++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 57888998852 44455666555667888887 554444322211111222322223334999885 45566678
Q ss_pred HHHHHHHh-CCCCcEEE
Q 018145 276 ILKNCYKA-VPGNGKVI 291 (360)
Q Consensus 276 ~L~~i~~~-LkpgG~ll 291 (360)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876544
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=86.14 E-value=0.35 Score=37.27 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=32.1
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..|.++||+++|+ ++.-+.+.|+-|...|+|...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999 999999999999999999984
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=86.11 E-value=0.43 Score=43.76 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 36 VLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 36 ~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
...++++...+..|++.|. .|+.|..|||+.+|+ .+.-+.++++.|...|+|.+.+
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp ----------CCCSHHHHH-HSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec
Confidence 4566777778888999999 789999999999999 8889999999999999998753
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=85.88 E-value=0.56 Score=38.27 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc-eeecccCCCceeecchh
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALNPV 108 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~-l~~~~~~~~~~y~~t~~ 108 (360)
..-....|.+.|.+. ++.|..+||+++|+ ..+-+++-++.|...|+ +.. ..+.|.+.+.
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~----~~~Gy~l~~~ 79 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECCTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----ECCEEEECCc
Confidence 345567788888753 47999999999999 89999999999999999 764 2355766543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=0.64 Score=40.05 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=64.2
Q ss_pred CcceEEEEcCCcchHHHHHHhh-------CCCCeEEEecc----hhH------------------------HH-------
Q 018145 197 NVERLVDVGGGFGVTLSMITSK-------YPQIKAVNFDL----PHV------------------------VQ------- 234 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 234 (360)
-+..|+|+|+-.|..+..++.. .++-+++++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999888776542 46778888883 321 00
Q ss_pred hCCC----CCCcEEEecCCCCCC-------CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 235 DAPS----YAGVEHVGGNMFESV-------PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 235 ~a~~----~~~v~~~~~d~~~~~-------~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..+. .++|+++.|++.+.. |.. |++.+=.=.+ +.....+..+...|+|||.+++-+.
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 0011 167999999987632 322 7777644221 2445789999999999999988664
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=84.98 E-value=4.5 Score=35.21 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCC----CeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQ----IKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~ 272 (360)
++..|+=||||.|.....|.+.+|+ ++.+.+|...-+...+..+ ++.+....+ ++.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~----------------NV~li~~fv----de~ 119 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLR----------------DVTLVTRFV----DEE 119 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCT----------------TEEEEECCC----CHH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhhhcCCC----------------cEEEEeccC----CHH
Confidence 4579999999999999999988775 5788888311111111112 444443332 222
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
-+++.++.+.....|+|.|.-..
T Consensus 120 ---dl~~l~~~~~~~~iLLISDIRS~ 142 (307)
T 3mag_A 120 ---YLRSIKKQLHPSKIILISDVRSK 142 (307)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC-
T ss_pred ---HHHHHHHhccCCCEEEEEEecCC
Confidence 25666777778889999887554
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=84.50 E-value=0.94 Score=34.98 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCC-CcCcHHHHHHHHhcCcceeeccc-CCCceeecc
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVK-APMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~-~~~~~~~~L~~L~~~g~l~~~~~-~~~~~y~~t 106 (360)
.+..+.-|++.|... ++.|+++|.+.+.-+.|. +..-+.|.|+.|+..|+|.+... ++..+|...
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 355677788888764 489999999998421111 66679999999999999988642 223467654
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=84.44 E-value=0.67 Score=39.79 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
-+..++..|.+. ++.|..+||+.+++ ++.-+-++++-|+..|+|.+.....+. ...+|+.|..++.
T Consensus 35 ~q~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~ 105 (250)
T 1p4x_A 35 KEFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (250)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHH
Confidence 345566777653 47899999999999 889999999999999999987543333 4678888876543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=84.29 E-value=2.4 Score=32.35 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred ceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC--C-----CCCcEEEeccccccCC
Q 018145 199 ERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--V-----PEGDAILMKWILHCWD 269 (360)
Q Consensus 199 ~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--~-----~~~D~i~~~~vlh~~~ 269 (360)
.+|+=+|||. |......+.. .+..++++|. ++.++.+++ .++.++.+|..++ + ...|++++.- +
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI-----P 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----S
T ss_pred CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----C
Confidence 5788888864 3333333333 2467888887 666665543 5688999998762 1 1238887642 2
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli 292 (360)
++.....+-...+.+.|+.+++.
T Consensus 81 ~~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred ChHHHHHHHHHHHHHCCCCeEEE
Confidence 22222223334566778877665
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=83.89 E-value=0.87 Score=34.98 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=44.7
Q ss_pred HHHhhChhhHhhhC--CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeeccc-CCCceeecc
Q 018145 43 AAIQLGVFEIIAKA--GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALN 106 (360)
Q Consensus 43 ~a~~lglfd~L~~~--g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-~~~~~y~~t 106 (360)
+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+... .+..+|..+
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 34456678888653 489999999998 55 67779999999999999997632 122467653
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=1 Score=32.64 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHh
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLV 87 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~ 87 (360)
.+.++||+..|.. |..|-.|||+.+|+ ....+.|+-++|-
T Consensus 44 l~~R~~l~~~L~~-ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR-GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH-CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4557999999988 57999999999999 8888888766664
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=83.47 E-value=1.1 Score=35.06 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHHhhChhhHhhhC-CCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcceeecccC-CCceeec
Q 018145 42 QAAIQLGVFEIIAKA-GELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVLECSVSG-GERLYAL 105 (360)
Q Consensus 42 ~~a~~lglfd~L~~~-g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~~~~y~~ 105 (360)
.+-.+.-|++.|... ++.|+++|.+.+ ++ +..-+.|.|+.|+..|+|.+.... +..+|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 356677788888764 489999999998 56 777899999999999999976421 2235665
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=83.28 E-value=2.7 Score=37.86 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=58.3
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC------CCCC----CCCC-cEEEe
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN------MFES----VPEG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d------~~~~----~~~~-D~i~~ 261 (360)
.+++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--..+..+ ..+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56778999999875 888888998875437888875 5545555433211222211 1100 1133 88875
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.-- . ...++...+.|+|||+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 432 1 2357788899999999998754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=83.25 E-value=1.5 Score=43.33 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=55.5
Q ss_pred CcceEEEEcCCcchHHHHHHhhC-------CC-----CeEEEecc----hhHHHhCCC-------------------C--
Q 018145 197 NVERLVDVGGGFGVTLSMITSKY-------PQ-----IKAVNFDL----PHVVQDAPS-------------------Y-- 239 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~~-------------------~-- 239 (360)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+-. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999998777665542 22 56777764 233331111 0
Q ss_pred ----------CCcEEEecCCCCC---CC----C-CcEEEeccccccC-ChhHHHHHHHHHHHhCCCCcEEE
Q 018145 240 ----------AGVEHVGGNMFES---VP----E-GDAILMKWILHCW-DDDHCLRILKNCYKAVPGNGKVI 291 (360)
Q Consensus 240 ----------~~v~~~~~d~~~~---~~----~-~D~i~~~~vlh~~-~~~~~~~~L~~i~~~LkpgG~ll 291 (360)
-.+++..+|+.+. ++ . .|++++-..-..- |+-.-..+++.+++.++|||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEE
Confidence 1244666777551 21 1 2888873322111 11123568999999999998766
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.17 E-value=0.72 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=37.7
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
-.|++.+..+ |-+.++.+|+++|+ +..-+-.+|+-|++.|++..
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 3467777775 47899999999999 88899999999999999974
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.14 E-value=2.4 Score=38.47 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec---CCCCC----CCCC-cEEEeccc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NMFES----VPEG-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~~~~----~~~~-D~i~~~~v 264 (360)
.+++.+||-+|+|. |.++..+++.....+++++|. ++-.+.+++..--.++.. |+.+. .+.+ |+|+-.--
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 56778999999886 888888888764436777775 555555543221122221 11110 1124 88875432
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. ...++.+.+.|+|||+++++-..
T Consensus 268 -----~---~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 24688889999999999987543
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.06 E-value=0.75 Score=34.58 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=41.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
....|.+.+.+ .|.++.+||+.+|+ ++..++.+|+.|...|.+..- ..+.|-++
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i---~~~~~~~~ 61 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI---VKDRYYRN 61 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE---ETTEEEEH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---cCCceECH
Confidence 33445556644 37799999999999 899999999999999999873 45655444
|
| >3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B | Back alignment and structure |
|---|
Probab=82.51 E-value=1.5 Score=36.70 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 56 AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 56 ~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.|++|+.+||+.+|+ ........|+.++..|++-++.
T Consensus 166 ~g~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEEC
Confidence 369999999999999 8889999999999999999863
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=82.48 E-value=1.8 Score=40.07 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCcceEEEEcCCcchHHHHHH-hhCCC-CeEEEecc-hhHHHh
Q 018145 196 QNVERLVDVGGGFGVTLSMIT-SKYPQ-IKAVNFDL-PHVVQD 235 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 235 (360)
+++..|+|||++.|.++..++ +..++ .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 567899999999999999988 56765 78999987 655443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=82.28 E-value=5 Score=35.78 Aligned_cols=122 Identities=10% Similarity=0.038 Sum_probs=70.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCe-EEEecc-hhHHHhCCCC-CCcEEEecCCCC-C---CCCCcEEEeccccccCCh
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIK-AVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-S---VPEGDAILMKWILHCWDD 270 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~---~~~~D~i~~~~vlh~~~~ 270 (360)
..+++|+-||.|.++..+.+.. .+ +..+|. +.+++..+.+ +... .+|+.+ . ++..|+++...-...++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 4789999999999999998874 33 455666 5555433321 2222 567765 1 334488887644444431
Q ss_pred ---------h--HHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 271 ---------D--HCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 271 ---------~--~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
+ ....-+-++.+.++| ++++.|.+..- .. .....+.+.+.+.|++.
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl-------------~~--------~~~~~~~~~i~~~l~~~ 143 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNF-------------AS--------HDNGNTLEVVKNTMNEL 143 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGG-------------GT--------GGGGHHHHHHHHHHHHT
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHH-------------Hh--------ccccHHHHHHHHHHHhC
Confidence 1 111123334455677 46777876531 00 01112456788888999
Q ss_pred CCceeeE
Q 018145 340 GFKGINF 346 (360)
Q Consensus 340 Gf~~~~~ 346 (360)
||.+...
T Consensus 144 GY~v~~~ 150 (327)
T 2c7p_A 144 DYSFHAK 150 (327)
T ss_dssp TBCCEEE
T ss_pred CCEEEEE
Confidence 9886443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.25 E-value=5.5 Score=34.31 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred eEEEEcCCc-c-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCC-CCcEEEeccccccCChhHHHH
Q 018145 200 RLVDVGGGF-G-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVP-EGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 200 ~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~-~~D~i~~~~vlh~~~~~~~~~ 275 (360)
+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......|..+... ..|+|+++ .+++....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 677888774 2 33333444322236888887 5555544322211111223222233 45999885 45666778
Q ss_pred HHHHHHHhCCCCcEEEE
Q 018145 276 ILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 276 ~L~~i~~~LkpgG~lli 292 (360)
+++.+...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 88999899999875543
|
| >4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=82.14 E-value=0.84 Score=33.99 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=48.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhC------cCCCCCcCcHHHHHHHHhcCcceeecccC-C----Cceeecchhchhhh
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQ------AQNVKAPMMLDRMLRLLVSHRVLECSVSG-G----ERLYALNPVSKYFV 113 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~------~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~----~~~y~~t~~s~~~~ 113 (360)
+++=|+..|.. +|.+.-+|++.+. + ++..+...|+-|+..|+|+..... + ...|++|+.|+..+
T Consensus 10 l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQ-EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 34445666766 5899999999885 6 788899999999999999975321 1 12599999998655
Q ss_pred c
Q 018145 114 S 114 (360)
Q Consensus 114 ~ 114 (360)
.
T Consensus 85 ~ 85 (115)
T 4esb_A 85 E 85 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.01 E-value=0.27 Score=46.58 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HhhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCc-ceeecccCCCceeecchhchhhhcCCCCC
Q 018145 45 IQLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHR-VLECSVSGGERLYALNPVSKYFVSNKDGA 119 (360)
Q Consensus 45 ~~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g-~l~~~~~~~~~~y~~t~~s~~~~~~~~~~ 119 (360)
++..|+..|...+ +.+.++||+.+|+ ++..+-+.+..|.+.| ++.... .....|.+|+.|+.++...++.
T Consensus 6 ~~~~iL~~l~~~~~~~~~~~~a~~~~~----~~~~v~~~~~~L~~~~~~v~~~~-~~~~~~~Lt~eg~~~~~~G~pE 77 (508)
T 3l4g_A 6 VAELLLRRLEASDGGLDSAELAAELGM----EHQAVVGAVKSLQALGEVIEAEL-RSTKHWELTAEGEEIAREGSHE 77 (508)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHcCC----CHHHHHHHHHHHHhCCCeEEEEE-EEEEEEEECHHHHHHHHcCCHH
Confidence 4556677777655 7789999999999 8888999999999998 887654 4667899999999998887764
|
| >2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C* | Back alignment and structure |
|---|
Probab=81.78 E-value=1.4 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=27.7
Q ss_pred hhHhhhCCCCCHHHHHHHh-----CcCCCCCcCcHHHHHHHHhcCcce
Q 018145 50 FEIIAKAGELSAPEIAAQL-----QAQNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 50 fd~L~~~g~~t~~~la~~~-----~~~~~~~~~~~~~~L~~L~~~g~l 92 (360)
...+...++.|+++|++.+ ++ ...-+.|.|+ ..|++
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 3445555699999999999 88 7777888887 55777
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=81.69 E-value=1.2 Score=41.52 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=44.0
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
++..-+..|++.|...+++|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 444455567888888789999999999999 888999999999999999975
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.62 E-value=3.9 Score=37.47 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec---CC-CCC----CCC-C-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NM-FES----VPE-G-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~-~~~----~~~-~-D~i~~~ 262 (360)
.+++.+||.+|+|. |.++..+++.....+++++|. ++-.+.+++.. .+.+.. |+ .+. .+. + |+|+-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66788999999886 888889998864337888886 66666665542 233322 11 110 112 4 888764
Q ss_pred cccccCC--h----hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 263 WILHCWD--D----DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 263 ~vlh~~~--~----~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
---.... + ......++.+.+.|+|||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 3321100 0 00123688889999999999876543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 360 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-78 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 5e-74 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 1e-69 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 1e-37 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 4e-34 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 6e-34 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-33 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 2e-20 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 4e-15 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 7e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 6e-05 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 238 bits (609), Expect = 2e-78
Identities = 100/243 (41%), Positives = 151/243 (62%), Gaps = 3/243 (1%)
Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMF 178
L F ++ W+ K+AV++ I F VHG+ +E+ + + N+ ++++M
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 238
+ M+R+LE Y GF+ + LVDVGGG G L +I SKYP IK +NFDLP V+++AP
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 239 YAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298
+G+EHVGG+MF SVP+GDA+++K + H W D+ C+ L NC+KA+ NGKVI++ I+P
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 299 EIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLY-IME 357
E P S ++ S LD L+ GGRERT+K+Y +L+ +GF A N +ME
Sbjct: 183 EEPNTSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241
Query: 358 FFK 360
F+K
Sbjct: 242 FYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 227 bits (579), Expect = 5e-74
Identities = 131/242 (54%), Positives = 174/242 (71%)
Query: 117 DGASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEA 176
DG S+ + DKV MESW LKDAV++GGIPFN+ +GM FEY +PRFN+ +++
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 177 MFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDA 236
M +HSTI M++ILE Y GF+ ++ LVDVGGG G ++ I SKYP IK +NFDLPHV++DA
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 237 PSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296
PSY GVEHVGG+MF S+P+ DA+ MKWI H W D+HCL+ LKNCY+A+P NGKVIV I
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 297 VPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIM 356
+P P+ S A + +DV+++ + GG+ERT+KE+ +LA AGF+G N YIM
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 357 EF 358
EF
Sbjct: 241 EF 242
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 216 bits (551), Expect = 1e-69
Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 6/244 (2%)
Query: 120 SLGHFMALPLDKVFMESWLGLKDAVMEGGI-PFNRVHGMHIFEYASGNPRFNETYHEAMF 178
L + LD S+ LK + E + F G +++ NP +N ++++AM
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61
Query: 179 NHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS 238
+ S + + + F +E +VDVGGG G T +I +P++K + FD P VV++
Sbjct: 62 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121
Query: 239 YAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGN---GKVIVMNS 295
+ +VGG+MF S+P DA+L+K+ILH W D CLRILK C +AV + GKV +++
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181
Query: 296 IVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYI 355
++ + + + + L+DV + G+ER ++E+ +L I AGF+ + L +
Sbjct: 182 VIDKKKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239
Query: 356 MEFF 359
+E +
Sbjct: 240 IEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 133 bits (336), Expect = 1e-37
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 17/239 (7%)
Query: 133 FMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHY 192
++ GL D V G + +G +E S + +++ M +A E + Y
Sbjct: 18 ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 77
Query: 193 EGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGN---- 248
+ + V ++DVGGG G L+ I + P ++ +L + A +
Sbjct: 78 D-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 136
Query: 249 ----MFESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVS 304
D +L+ ++L W D+ L IL+ C +A+ G+++V++ E
Sbjct: 137 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG-- 194
Query: 305 SAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC-----VCNLYIMEF 358
A R S L L M GGR RT+ E +LA +AG + + + I+EF
Sbjct: 195 -ADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 252
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 119 bits (300), Expect = 4e-34
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE----LSAPEIAAQLQA--QN 72
+ E+ + AM L +V P AAI L +FEIIAKA +S EIA++L A Q+
Sbjct: 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60
Query: 73 VKAPMMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNKD 117
P LDRMLRLL S+ VL + G ER+Y L+ V KY V ++
Sbjct: 61 SDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 119 bits (299), Expect = 6e-34
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 8/105 (7%)
Query: 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE---LSAPEIAAQLQAQNVKAP 76
+EE+ AMQLA VLPM ++A++L + EIIAKAG +S EIA+QL N AP
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 77 MMLDRMLRLLVSHRVLECSV-----SGGERLYALNPVSKYFVSNK 116
+MLDRMLRLL + +L CSV +RLY L V+KY V N+
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 123 bits (308), Expect = 1e-33
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 136 SWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGF 195
S+ L DA+ G + ++G +E +G P ++ + +A + Y+ +
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78
Query: 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMF----- 250
NV ++DVGGG G + I + P + A ++ V A SY E + +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138
Query: 251 ---ESVPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAA 307
+ DAI++ ++L W D +RIL C +A+ G++++ +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQF 198
Query: 308 RETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342
E LD+ ++ GG RT++++ LA +AG
Sbjct: 199 TE---LDLRMLVF-LGGALRTREKWDGLAASAGLV 229
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 83.0 bits (205), Expect = 2e-20
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 17 EEEEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGE-LSAPEIAAQLQAQNVKA 75
+ E ++ + + + M+ + A+++ + II G+ +S + + LQ + K
Sbjct: 2 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKI 61
Query: 76 PMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSNKD 117
+ R++R L + E E YAL S+ V D
Sbjct: 62 GNV-RRLMRYLAHNGFFEIITK-EEESYALTVASELLVRGSD 101
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 67.5 bits (165), Expect = 4e-15
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLL 86
+ + PM + A L + + I G + +AA+ + P L R++R L
Sbjct: 4 RTLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDTR----PEALLRLIRHL 58
Query: 87 VSHRVLECSVSGGERLYALNPVSKYFVSN 115
V+ +LE + V + +
Sbjct: 59 VAIGLLEED---APGEFVPTEVGELLADD 84
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 61.7 bits (150), Expect = 7e-13
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMM 78
E ++ ++ +V PMA + A L + + + AG + +A + P
Sbjct: 2 EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL-AGADTLAGLADRTDTH----PQA 56
Query: 79 LDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFV 113
L R++R L VLE G +
Sbjct: 57 LSRLVRHLTVVGVLEGGEKQGRP-LRPTRLGMLLA 90
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESV----- 253
R++D+G G G T + + V+ V + +
Sbjct: 18 HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 254 ---PEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARET 310
D I ++ H + D + ++ + + +G+ ++++ PE P +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDPVLD------ 129
Query: 311 SLLDVLLMTRDGG-GRERTKKEYTELAIAAGFKGI 344
++ L RD RE + E+ + A
Sbjct: 130 EFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQ 164
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 12/164 (7%)
Query: 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEH 244
+ ++++ + E ++DV G G + ++ A + + G H
Sbjct: 4 LAKLMQIA-ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH 62
Query: 245 VGGNMFESVPEGDAILMKWILHCWDDDHCL------RILKNCYKAVPGNGKVIVMNSIVP 298
+ E + + Y+ + G+++++++ P
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 122
Query: 299 EIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342
E V R K ++ ++ AGF+
Sbjct: 123 ENDAFDVFYNY-----VEKERDYSHHRAWKKSDWLKMLEEAGFE 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 360 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.75 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.67 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.61 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.57 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.55 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.51 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.4 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.4 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.39 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.35 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.35 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.34 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.31 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.31 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.31 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.3 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.3 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.29 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.26 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.25 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.17 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.08 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.03 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.98 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.9 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.89 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.85 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.78 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.5 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.45 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.4 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.38 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.36 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.35 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.29 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.28 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.26 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.24 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.23 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.21 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.19 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.15 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.13 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.13 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.13 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.1 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.07 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.05 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.92 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.87 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.86 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.86 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.85 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.85 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.84 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.82 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.82 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.81 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.7 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.62 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.62 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.59 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.42 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.41 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 97.1 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.92 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.9 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 96.64 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.53 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.48 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.38 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 96.32 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.32 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.24 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 96.22 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.11 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 95.96 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.95 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 95.79 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 95.76 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.59 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 95.43 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.43 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 95.42 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 95.37 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.32 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 95.24 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.17 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.12 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.08 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.95 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.9 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.88 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 94.46 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 94.44 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 94.42 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 94.37 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.36 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.35 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.34 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 94.33 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 94.3 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 94.25 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 94.24 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 94.2 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.19 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.18 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 94.15 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 94.01 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.92 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 93.91 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.9 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.85 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 93.8 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.62 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.53 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 93.47 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 93.43 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 93.26 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.24 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.23 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.96 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 92.88 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 92.8 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 92.57 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 92.38 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 92.17 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 92.04 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.9 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.74 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 91.51 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.35 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 91.28 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.9 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.39 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.09 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 89.61 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 89.52 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 89.25 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 88.74 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 88.51 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 88.39 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.28 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 88.06 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 87.74 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.5 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.78 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 86.33 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 86.2 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 85.92 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 85.52 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 85.21 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 84.75 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 84.63 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 84.27 | |
| d1xn7a_ | 78 | Hypothetical protein YhgG {Escherichia coli [TaxId | 83.64 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 82.98 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 82.95 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 82.55 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 82.3 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 82.26 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.17 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 82.0 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.0 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 81.68 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 81.66 | |
| d1okra_ | 120 | Methicillin resistance regulatory protein MecI {St | 81.59 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.98 | |
| d2htja1 | 73 | P fimbrial regulatory protein PapI {Escherichia co | 80.82 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 80.31 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 80.29 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 80.06 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.8e-44 Score=314.24 Aligned_cols=240 Identities=41% Similarity=0.796 Sum_probs=207.2
Q ss_pred ChHHHhhccCChhHHHhhhchhHHHhcCC-CcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCc
Q 018145 120 SLGHFMALPLDKVFMESWLGLKDAVMEGG-IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198 (360)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~ 198 (360)
|+++++.+++.|.+++.|.+|.++++++. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++.+++.
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~ 82 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 82 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 68888888889999999999999999865 46899999999999999999999999999998888888999998866888
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHH
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILK 278 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~ 278 (360)
.+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+++++.++|+
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~ 162 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 162 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999988889999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC-CceeEEE
Q 018145 279 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV-CNLYIME 357 (360)
Q Consensus 279 ~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~ 357 (360)
+++++|+|||+|+|+|.+.++.+...........+++.|+... +|+.||.+||.++|++|||+.+++++.. +..+|||
T Consensus 163 ~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE 241 (244)
T d1fp1d2 163 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241 (244)
T ss_dssp HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEE
T ss_pred HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEE
Confidence 9999999999999999998876555444445566788887765 8999999999999999999999998654 7889999
Q ss_pred EeC
Q 018145 358 FFK 360 (360)
Q Consensus 358 ~~k 360 (360)
++|
T Consensus 242 ~~K 244 (244)
T d1fp1d2 242 FYK 244 (244)
T ss_dssp EEC
T ss_pred EeC
Confidence 998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=6.5e-43 Score=305.41 Aligned_cols=241 Identities=54% Similarity=1.011 Sum_probs=218.7
Q ss_pred CChHHHhhccCChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCc
Q 018145 119 ASLGHFMALPLDKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198 (360)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~ 198 (360)
.++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+......++..++..++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 36788888878888999999999999999999999999999999999999999999999988888888888888744667
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHH
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILK 278 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~ 278 (360)
.+|||||||+|.++..+++++|+++++++|+|.+++.++..+|++++.+|+++++|.+|+|++++++|+|+++++.++|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEEEE
Q 018145 279 NCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIMEF 358 (360)
Q Consensus 279 ~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 358 (360)
+++++|+|||+++|+|.+.++....+........+++.|+.++.+|+.||.+||+++|++|||+.+++++.+...+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999987654444333444567888887666899999999999999999999999999899999997
Q ss_pred e
Q 018145 359 F 359 (360)
Q Consensus 359 ~ 359 (360)
+
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.1e-41 Score=293.12 Aligned_cols=238 Identities=32% Similarity=0.593 Sum_probs=208.8
Q ss_pred hHHHhhccCChhHHHhhhchhHHHhcCC-CcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCcc
Q 018145 121 LGHFMALPLDKVFMESWLGLKDAVMEGG-IPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNVE 199 (360)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~~ 199 (360)
+..++.+..+|.++..|..+.+.++++. ++|+..+|.++|+|+.++|+..+.|+++|...+......+......+++..
T Consensus 3 ~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~ 82 (244)
T d1fp2a2 3 LAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLE 82 (244)
T ss_dssp CHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCS
T ss_pred hHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCce
Confidence 4556666678999999999999999975 579989999999999999999999999999887766666655432267778
Q ss_pred eEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHHHHH
Q 018145 200 RLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRILKN 279 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~ 279 (360)
+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|.+|+|+++++||+|+++++.++|++
T Consensus 83 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~ 162 (244)
T d1fp2a2 83 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKK 162 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999998887799999999999999999999999
Q ss_pred HHHhCCCC---cEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecCCceeEE
Q 018145 280 CYKAVPGN---GKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCVCNLYIM 356 (360)
Q Consensus 280 i~~~Lkpg---G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi 356 (360)
++++|+|| |+++|+|.+.++.............+++.|+. . +|+.||.+||+++|++|||+.+++++.++..+||
T Consensus 163 ~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~svI 240 (244)
T d1fp2a2 163 CKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLI 240 (244)
T ss_dssp HHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEE
T ss_pred HHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEEE
Confidence 99999998 89999999988765544333344556776664 3 7999999999999999999999999999999999
Q ss_pred EEeC
Q 018145 357 EFFK 360 (360)
Q Consensus 357 ~~~k 360 (360)
|++|
T Consensus 241 E~~p 244 (244)
T d1fp2a2 241 EIYP 244 (244)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.6e-38 Score=279.79 Aligned_cols=237 Identities=25% Similarity=0.414 Sum_probs=202.5
Q ss_pred CChHHHhhccCChhHH-HhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCC
Q 018145 119 ASLGHFMALPLDKVFM-ESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQN 197 (360)
Q Consensus 119 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~ 197 (360)
.++++|+.+....... .+|.+|.+++|+|.++|...+|.++|+|++++|+..+.|+++|...+......+++.++ +++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 4678888775333333 36999999999999999999999999999999999999999999888888889999998 889
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCCCCCCCCC-cEEEeccccccCC
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFESVPEG-DAILMKWILHCWD 269 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~~~-D~i~~~~vlh~~~ 269 (360)
..+|||||||+|.++..+++++|+++++++|+|++++.+++ .++++++.+|+++++|.+ |+|+++++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888877653 268999999999987766 9999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEec
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 349 (360)
++++.++|++++++|||||+|+|+|...+++... .......+++.|+... +|+.||.++|.++|+++||+++++.+.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 9999999999999999999999999876543222 2234556788888776 899999999999999999999999876
Q ss_pred C-----CceeEEEEe
Q 018145 350 V-----CNLYIMEFF 359 (360)
Q Consensus 350 ~-----~~~~vi~~~ 359 (360)
+ ...+|||+.
T Consensus 239 ~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 239 GSTTLPFDFSILEFT 253 (256)
T ss_dssp CCSSCSSCEEEEEEE
T ss_pred CCcCccCceEEEEEE
Confidence 5 356899986
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=7.4e-37 Score=269.19 Aligned_cols=235 Identities=24% Similarity=0.427 Sum_probs=196.8
Q ss_pred ChHHHhhccC-ChhHHHhhhchhHHHhcCCCcchhccCCChhhhhccCccHHHHHHHHHhhcchhhHHHHHhhcccCCCc
Q 018145 120 SLGHFMALPL-DKVFMESWLGLKDAVMEGGIPFNRVHGMHIFEYASGNPRFNETYHEAMFNHSTIAMERILEHYEGFQNV 198 (360)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~i~~~~~~~~~~ 198 (360)
.++.|..+.. ......+|.+|.+++++|+++++..+|.++|+++.++++....|..+|........+.+++.++ +.+.
T Consensus 3 ~~r~~~~~~~~~~~~~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~ 81 (253)
T d1tw3a2 3 AQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNV 81 (253)
T ss_dssp CHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTC
T ss_pred chhhhhCHHHHHhhccccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccC
Confidence 3555555431 1223447899999999999999999999999999999999999999999988888889999998 8889
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCCC-------CCcEEEecCCCCCCCCC-cEEEeccccccCCh
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPSY-------AGVEHVGGNMFESVPEG-DAILMKWILHCWDD 270 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~~~~~~-D~i~~~~vlh~~~~ 270 (360)
.+|||||||+|.++..+++++|+++++++|+|++++.+++. ++|+++.+|++++.|.. |+|+++++||||++
T Consensus 82 ~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d 161 (253)
T d1tw3a2 82 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPD 161 (253)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCH
T ss_pred CEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCc
Confidence 99999999999999999999999999999998888776542 68999999999876655 99999999999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
+++.++|++++++|||||+|+|.|...+...... .....+++.|+... +|+.||.++|.++|+++||+++++...+
T Consensus 162 ~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 162 HDAVRILTRCAEALEPGGRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 9999999999999999999999998665432221 23345677777765 8999999999999999999999887654
Q ss_pred C-----ceeEEEEe
Q 018145 351 C-----NLYIMEFF 359 (360)
Q Consensus 351 ~-----~~~vi~~~ 359 (360)
. ...+|++.
T Consensus 238 ~p~~~~~~~li~~~ 251 (253)
T d1tw3a2 238 SPTIPYDLSLLVLA 251 (253)
T ss_dssp CSSSSCEEEEEEEE
T ss_pred CCCCCccEEEEEEe
Confidence 2 34566654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=8.3e-21 Score=162.96 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=120.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCCCCcEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVPEGDAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~D~i~~~~ 263 (360)
.+++.+|||||||+|..+..+++.. |+.+++++|+ +.|++.|+++ .++.+..+|+.+ +.+..|+|+++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 3567899999999999999999864 8899999999 9999998652 467888888887 555559999999
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh-hcC------------CCccCCHH
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RDG------------GGRERTKK 330 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~t~~ 330 (360)
++|++++++..++|++++++|||||++++.|...+..+..... .......+.... ... ....++.+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999998888999999999999999999999887654211100 000001110000 000 01235889
Q ss_pred HHHHHHHHcCCceeeEEecCCceeEEEEeC
Q 018145 331 EYTELAIAAGFKGINFASCVCNLYIMEFFK 360 (360)
Q Consensus 331 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 360 (360)
++.++|+++||+.++++...-....+.++|
T Consensus 196 ~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 999999999999999875443344455554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=2.5e-20 Score=160.42 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=115.6
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC-CCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~~- 256 (360)
..+++..+ ++++.+|||||||+|.++..+++..+ +++++|+ +.+++.|++ .++++++.+|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 35556555 78889999999999999999998864 6788888 888887754 2789999999998 77654
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhh-hcCCCccCCHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMT-RDGGGRERTKKEYTE 334 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e~~~ 334 (360)
|+|++.+++||+++. .++|++++++|||||++++.++..+... . .....+..... .......++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCH---H---HHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 999999999999854 5789999999999999999998765431 1 11122221111 112345678899999
Q ss_pred HHHHcCCceeeEEe
Q 018145 335 LAIAAGFKGINFAS 348 (360)
Q Consensus 335 ll~~aGf~~~~~~~ 348 (360)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999887653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=4.6e-20 Score=163.76 Aligned_cols=157 Identities=16% Similarity=0.237 Sum_probs=120.5
Q ss_pred chhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-
Q 018145 181 STIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE- 251 (360)
Q Consensus 181 ~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~- 251 (360)
.......+....+ ++++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|+++ ++++++.+|+.+
T Consensus 52 ~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l 129 (282)
T d2o57a1 52 DEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 129 (282)
T ss_dssp HHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccc
Confidence 3334445555555 7888999999999999999999876 578999998 8888877653 589999999998
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCH
Q 018145 252 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTK 329 (360)
Q Consensus 252 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 329 (360)
+++.+ |+|++..++||+++. .++|++++++|||||+|++.++.......... .....+ .. . .....+.
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~~-~-~~~~~s~ 199 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILD---RI-K-LHDMGSL 199 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHH---HH-T-CSSCCCH
T ss_pred cccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhH---HHHHHH---Hh-c-cCCCCCH
Confidence 77755 999999999999854 57999999999999999999988765322211 111111 11 1 2334588
Q ss_pred HHHHHHHHHcCCceeeEEec
Q 018145 330 KEYTELAIAAGFKGINFASC 349 (360)
Q Consensus 330 ~e~~~ll~~aGf~~~~~~~~ 349 (360)
++|.++++++||+.+.+...
T Consensus 200 ~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 200 GLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHcCCceEEEEEC
Confidence 99999999999998888764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=8.5e-20 Score=159.17 Aligned_cols=147 Identities=18% Similarity=0.289 Sum_probs=116.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC--c
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG--D 257 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~--D 257 (360)
..+++.++ ..+..+|||||||+|.++..++..+++ +++++|. +.+++.|+++ +.+++..+|+.+ +++.. |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45666666 567789999999999999998877654 6788888 8898888643 558999999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAI 337 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 337 (360)
+|++.+++||+++++..++|++++++|||||+++|.|.+...... ..+. ..+...|+.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987653210 1110 11345679999999999
Q ss_pred HcCCceeeEEe
Q 018145 338 AAGFKGINFAS 348 (360)
Q Consensus 338 ~aGf~~~~~~~ 348 (360)
++||++++...
T Consensus 227 ~aGf~ii~~~~ 237 (254)
T d1xtpa_ 227 ESGVRVVKEAF 237 (254)
T ss_dssp HHTCCEEEEEE
T ss_pred HcCCEEEEEEe
Confidence 99999988765
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=3.3e-19 Score=153.74 Aligned_cols=151 Identities=17% Similarity=0.317 Sum_probs=116.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-- 256 (360)
-+++.++ ++++.+|||||||+|.++..+++.++ +++++|+ +.+++.|+++ +++.++.+|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3456666 88999999999999999999999864 6889998 8888887653 579999999988 77765
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHH-hhhcCCCccCCHHHHHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLL-MTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~l 335 (360)
|+|++.+++||+++ ...+|++++++|||||++++.++..+.. +... .+++... .......+..+..+|.++
T Consensus 84 D~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPED---PVLD---EFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSS---HHHH---HHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCC---HHHH---HHHHHHHhhCCCcccccCCHHHHHHH
Confidence 99999999999875 4689999999999999999999876542 1111 1122111 111124556689999999
Q ss_pred HHHcCCceeeEEe
Q 018145 336 AIAAGFKGINFAS 348 (360)
Q Consensus 336 l~~aGf~~~~~~~ 348 (360)
++++||.+.++..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998766543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1e-19 Score=155.67 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=112.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC--cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG--DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~--D~i~~~~v 264 (360)
..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.|++. .+++|.++|+.+ +.+.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999887765 47888998 8999887653 457999999988 55443 99999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
+||+++++..++|+++++.|||||++++.+...++... .+ .......++.++|.++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 99999988889999999999999999999987654210 00 0113445789999999999999998
Q ss_pred eEEec
Q 018145 345 NFASC 349 (360)
Q Consensus 345 ~~~~~ 349 (360)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=4.2e-19 Score=154.20 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=117.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
..+.+.+. +.++.+|||||||+|.++..+++.++ ++++++|+ +.+++.|++. ++|+|+.+|+.+..++.
T Consensus 23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~ 100 (245)
T d1nkva_ 23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 100 (245)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence 34556565 78889999999999999999998875 78999999 8888877652 57999999998844443
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHH
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTEL 335 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 335 (360)
|+|++..++||+++. .++|++++++|||||++++.++.....+...... .... ........+..++.++
T Consensus 101 fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~ 170 (245)
T d1nkva_ 101 CDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA---QACG-----VSSTSDFLTLPGLVGA 170 (245)
T ss_dssp EEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHH---HTTT-----CSCGGGSCCHHHHHHH
T ss_pred eeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHHHH---HHhc-----cCCCcccCCHHHHHHH
Confidence 999999999999854 6799999999999999999998776543221111 0000 0112335688999999
Q ss_pred HHHcCCceeeEEecC
Q 018145 336 AIAAGFKGINFASCV 350 (360)
Q Consensus 336 l~~aGf~~~~~~~~~ 350 (360)
++++||+++.....+
T Consensus 171 ~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 171 FDDLGYDVVEMVLAD 185 (245)
T ss_dssp HHTTTBCCCEEEECC
T ss_pred HHHcCCEEEEEEeCC
Confidence 999999988876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=2e-18 Score=146.00 Aligned_cols=137 Identities=21% Similarity=0.175 Sum_probs=102.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEeccccccCChhH
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILMKWILHCWDDDH 272 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~~~ 272 (360)
+..+|||||||+|.++..+.+ .+++|+ +.+++.++++ +++++.+|+.+ +.+.. |+|++.++|||+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~~------~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHTC------CEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCCeEEEECCCCcccccccce------EEEEeCChhhccccccc-ccccccccccccccccccccccccccccccccc--
Confidence 456899999999999887743 478888 8999988753 69999999988 66644 99999999999985
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 273 CLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 273 ~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
..++|++++++|+|||++++.++..... ..... ...........+...+|.++|.++|+++||+.+++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESF-----LGREY-EKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHH-HHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcch-----hHHhh-hhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4689999999999999999998754321 10000 0000000011244567999999999999999988765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=7.6e-18 Score=148.32 Aligned_cols=164 Identities=15% Similarity=0.236 Sum_probs=123.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++.+. ++++.+|||||||.|.++..+++.++ ++++++|+ ++.++.|+++ .++.+...|..+.....
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 356777776 88899999999999999999888874 68999998 7777766542 46777777765432234
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC----Cch-hhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE----VSS-AARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
|.|++..+++|++++....+|++++++|||||+++|.+.+...... ... ........++...-.++++..++.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 9999999999999888889999999999999999998866543210 000 00011123444333457888999999
Q ss_pred HHHHHHHcCCceeeEEecC
Q 018145 332 YTELAIAAGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~ 350 (360)
+.+.++++||++.++...+
T Consensus 199 l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHTTCBCCCCEECH
T ss_pred hhhhHHhhccccceeeecc
Confidence 9999999999998887653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=4e-17 Score=143.65 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=124.3
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++.+. ++++.+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++..+|+.+.....
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 356777777 8899999999999999999999998 589999998 666665543 268999999976532234
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCC-----CCchhhhhhhhhhHHHhhhcCCCccCCHHH
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIP-----EVSSAARETSLLDVLLMTRDGGGRERTKKE 331 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 331 (360)
|.|++..++.|+..+....++++++++|||||++++.+.+..... ..+.........++...-.+++|..++.++
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~ 208 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 208 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence 999999999999877777899999999999999999887743210 000001111223333333457889999999
Q ss_pred HHHHHHHcCCceeeEEecC
Q 018145 332 YTELAIAAGFKGINFASCV 350 (360)
Q Consensus 332 ~~~ll~~aGf~~~~~~~~~ 350 (360)
+.++++++||+++++....
T Consensus 209 ~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHhchhhcccccch
Confidence 9999999999999887654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.71 E-value=2.2e-17 Score=146.03 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=111.1
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-c
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D 257 (360)
.++..+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|+++ .+++|..+|+.+ ++++. |
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD 96 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 96 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence 34444433567899999999999999999998875 78999998 8888887653 368999999988 55555 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCC-------CCC-chhhhhhhhhhHHHhhhcCCCc-cCC
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEI-------PEV-SSAARETSLLDVLLMTRDGGGR-ERT 328 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~-~~t 328 (360)
+|++.+++||++++ ..+|++++++|||||++++.|+..... ... ........+...........+. ...
T Consensus 97 ~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 174 (281)
T d2gh1a1 97 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 174 (281)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTG
T ss_pred EEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999865 578999999999999999999643111 000 0000011111111111111222 222
Q ss_pred HHHHHHHHHHcCCceeeEEe
Q 018145 329 KKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 329 ~~e~~~ll~~aGf~~~~~~~ 348 (360)
..++..+++++||+.+++.-
T Consensus 175 ~~~l~~~l~eaGf~~i~~~~ 194 (281)
T d2gh1a1 175 GMKIPIYLSELGVKNIECRV 194 (281)
T ss_dssp GGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 24678899999999987754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=6e-17 Score=142.92 Aligned_cols=164 Identities=16% Similarity=0.239 Sum_probs=122.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~ 256 (360)
.+.+++.+. ++++.+|||||||.|.++..++++++ ++++++++ ++.++.++++ .++++...|+...-...
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 346677776 88999999999999999999999885 68999998 6666655432 57888888864332234
Q ss_pred cEEEeccccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCch-----hhhhhhhhhHHHhhhcCCC
Q 018145 257 DAILMKWILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSS-----AARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 257 D~i~~~~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 324 (360)
|.|++..++.|+++ +.-..++++++++|||||++++...+.++...... ........++...-.+++|
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999886 34578999999999999999999988754211000 0001112233333345788
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..++..++...++++||++..+...+
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHhhhcccccccceeeecc
Confidence 99999999999999999999887764
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.67 E-value=3.8e-17 Score=119.79 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE 100 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~ 100 (360)
.+++..+++++.||+.+++|++|+++||||.|++. ||+|++|||+++++ ++.+.+.+.|+||+|++.|++.+.. +++
T Consensus 7 ~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~-~~~ 84 (101)
T d1fp2a1 7 FKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT-KEE 84 (101)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec-CCC
Confidence 34677899999999999999999999999999763 59999999999999 3334467999999999999997643 466
Q ss_pred ceeecchhchhhhcC
Q 018145 101 RLYALNPVSKYFVSN 115 (360)
Q Consensus 101 ~~y~~t~~s~~~~~~ 115 (360)
++|++|+.|+.|+.+
T Consensus 85 ~~Y~lt~~s~~Lv~~ 99 (101)
T d1fp2a1 85 ESYALTVASELLVRG 99 (101)
T ss_dssp EEEEECHHHHTTSTT
T ss_pred CeEecCHHHHHhhcC
Confidence 799999999977664
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.66 E-value=3.1e-16 Score=133.98 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC-CCCCC-cEEEeccccccCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE-SVPEG-DAILMKWILHCWD 269 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~-~~~~~-D~i~~~~vlh~~~ 269 (360)
..++.+|||||||+|.++..+++... +++++|+ +.+++.|+++ .+++++.+|+.+ +.++. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 34567899999999999999988764 5888888 8899888653 579999999887 44444 9999999999998
Q ss_pred hhHHHHHHHHHH-HhCCCCcEEEEEeeecCCCCCCchhhhhhhhh-------hHH-HhhhcCCCccCCHHHHHHHHHHcC
Q 018145 270 DDHCLRILKNCY-KAVPGNGKVIVMNSIVPEIPEVSSAARETSLL-------DVL-LMTRDGGGRERTKKEYTELAIAAG 340 (360)
Q Consensus 270 ~~~~~~~L~~i~-~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~t~~e~~~ll~~aG 340 (360)
++ ..+|++++ ++|||||++++..+-.... ........ .+. ..........++.++++++++++|
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~G 168 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG 168 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT
T ss_pred CH--HHHHHHHHHHhcCCCceEEEEeCCcccH-----HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCC
Confidence 54 67899998 7899999999976532210 00000000 000 000011334568999999999999
Q ss_pred CceeeEE
Q 018145 341 FKGINFA 347 (360)
Q Consensus 341 f~~~~~~ 347 (360)
|++++..
T Consensus 169 f~i~~~~ 175 (225)
T d2p7ia1 169 LQVTYRS 175 (225)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9988754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=4.5e-17 Score=139.04 Aligned_cols=100 Identities=16% Similarity=0.288 Sum_probs=86.4
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC--cEEEeccccc
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~--D~i~~~~vlh 266 (360)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.|++. ..+.++.+|+.+ +++.. |+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 45689999999999999999885 567899998 8899888653 568899999988 66644 9999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
|+++.+..++|++++++|||||++++..+..
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 9998888899999999999999999877543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=2.5e-16 Score=134.29 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=106.4
Q ss_pred cccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----CCCCcEEEecCCCCC--CCC-C-cEEEec
Q 018145 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VPE-G-DAILMK 262 (360)
Q Consensus 192 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~d~~~~--~~~-~-D~i~~~ 262 (360)
++ ++++.+|||||||+|.++..+++..|+..++++|+ |.+++.++ ..+++..+.+|...+ ... . |++++.
T Consensus 70 l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~ 148 (230)
T d1g8sa_ 70 MP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence 44 77889999999999999999999999999999999 77776553 357788899888773 222 2 777777
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+.+|+.+ +...+++++++.|||||++++.+.....+...+ .....+++.+.|+++||+
T Consensus 149 ~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~~e~~~~L~~aGF~ 206 (230)
T d1g8sa_ 149 EDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIFKEQKEILEAGGFK 206 (230)
T ss_dssp ECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHHHHHHHHHHHHTEE
T ss_pred ccccchH--HHHHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHHHHHHHHHHHcCCE
Confidence 7787754 557789999999999999999887654432111 111235788999999999
Q ss_pred eeeEEecCC
Q 018145 343 GINFASCVC 351 (360)
Q Consensus 343 ~~~~~~~~~ 351 (360)
+++.+.+.+
T Consensus 207 ive~idL~p 215 (230)
T d1g8sa_ 207 IVDEVDIEP 215 (230)
T ss_dssp EEEEEECTT
T ss_pred EEEEecCCC
Confidence 999988763
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.62 E-value=8.5e-16 Score=128.54 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=85.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC-CCCCC-cEEEecccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE-SVPEG-DAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~~~~-D~i~~~~vl 265 (360)
...+.+|||||||+|..+..++++. .+++++|+ +.+++.+++. +++++...|+.+ ..+.. |+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 3445799999999999999999985 56888888 7888866532 568999999988 44444 999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
||+++++..++|++++++|+|||++++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99998899999999999999999999987654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.1e-15 Score=132.64 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=87.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~ 258 (360)
.++.... .+++.+|||||||+|.++..+++.. .+++++|+ +.+++.|+++ .++++..+|+.+ +.++. |+
T Consensus 32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~ 108 (251)
T d1wzna1 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (251)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence 4455454 5667899999999999999999874 47889998 8899988753 479999999988 66655 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 259 ILMK-WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 259 i~~~-~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|++. +++++++.++..++|+++++.|||||++++..
T Consensus 109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8875 68888888888999999999999999998854
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.60 E-value=1.1e-15 Score=108.65 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=73.6
Q ss_pred HHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 28 AMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 28 ~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
.+..+.+++.+.++++|+++||||.|.. ||.|++|||+++|+ ++..+.|+||+|++.|++++ .+++.|++|+
T Consensus 5 ~l~~l~~~~~~~aL~~av~L~ifd~l~~-gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e---~~~~~y~lt~ 76 (85)
T d1tw3a1 5 TLIRLGSLHTPMVVRTAATLRLVDHILA-GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEE---DAPGEFVPTE 76 (85)
T ss_dssp HHHHHHCSHHHHHHHHHHHTTHHHHHHT-TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE---EETTEEEECT
T ss_pred HHHHHHchHHHHHHHHHHHcCcHHHhcc-CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEe---cCCCeEecCH
Confidence 3556688999999999999999999987 79999999999999 99999999999999999997 4678999999
Q ss_pred hchhhhcCC
Q 018145 108 VSKYFVSNK 116 (360)
Q Consensus 108 ~s~~~~~~~ 116 (360)
.|+.|..++
T Consensus 77 ~s~~L~~Dh 85 (85)
T d1tw3a1 77 VGELLADDH 85 (85)
T ss_dssp TGGGGSTTS
T ss_pred HHHHhhcCC
Confidence 999887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=2.7e-15 Score=125.06 Aligned_cols=108 Identities=13% Similarity=0.089 Sum_probs=89.0
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------------------CCcEEEecC
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------------------AGVEHVGGN 248 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~d 248 (360)
+...+. ++++.+|||||||+|..+..|+++ +.+++++|+ +.+++.|+++ ..+++..+|
T Consensus 12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 344454 678899999999999999999997 578899998 8899888642 346788888
Q ss_pred CCCCCC--C-C-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 249 MFESVP--E-G-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 249 ~~~~~~--~-~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
+.+..+ . . |+|+++.++|++++++...+++++++.|||||++++......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 887322 1 2 999999999999998889999999999999999998776554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.57 E-value=6.1e-16 Score=133.93 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=78.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-CCCCC-cEEEec-ccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-SVPEG-DAILMK-WILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~~-D~i~~~-~vlh~ 267 (360)
++.+|||||||+|.++..+++.+. +++++|+ +.|++.|+++ .+++++.+|+.+ +.+.. |+|++. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 457999999999999999999854 6889998 8899888653 479999999988 55544 998864 67777
Q ss_pred C-ChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 268 W-DDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 268 ~-~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
+ +.++..++|+++++.|||||.|++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6 466788999999999999999886
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1e-14 Score=124.68 Aligned_cols=131 Identities=10% Similarity=-0.025 Sum_probs=101.4
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------------------CCCcEEEecCCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------------------YAGVEHVGGNMF 250 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~d~~ 250 (360)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567789999999999999999986 568999999 888876532 146899999998
Q ss_pred C-C-CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCcc
Q 018145 251 E-S-VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRE 326 (360)
Q Consensus 251 ~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (360)
+ + .+.+ |+|+...++|++++++...++++++++|||||++++.....+.... ......
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~------------------~gpp~~ 182 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH------------------PGPPFY 182 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC------------------CCSSCC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC------------------CCCCCC
Confidence 7 2 3333 9999999999999999999999999999999999988776543210 001123
Q ss_pred CCHHHHHHHHHHcCCceeeE
Q 018145 327 RTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 327 ~t~~e~~~ll~~aGf~~~~~ 346 (360)
.+.+++.++|.+ +|.+..+
T Consensus 183 ~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEEE
Confidence 478999999965 6765443
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.55 E-value=4.6e-15 Score=106.69 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc
Q 018145 22 EESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER 101 (360)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~ 101 (360)
...+..+++.+.+++.+.++++|+++||||.|.. ||.|+++||+++|+ +++.+.|+||+|++.|++++.. ++..
T Consensus 5 d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~-gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~-d~~~ 78 (92)
T d1qzza1 5 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE-KQGR 78 (92)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC-C-CC
T ss_pred chhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC-CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec-CCCc
Confidence 3678889999999999999999999999999987 79999999999999 9999999999999999999742 2344
Q ss_pred eeecchhchhhhc
Q 018145 102 LYALNPVSKYFVS 114 (360)
Q Consensus 102 ~y~~t~~s~~~~~ 114 (360)
.|++|+.|..+..
T Consensus 79 ~~~~t~~g~lL~d 91 (92)
T d1qzza1 79 PLRPTRLGMLLAD 91 (92)
T ss_dssp CCEECTTGGGGST
T ss_pred eecccHHHHhccC
Confidence 6888998887653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.2e-15 Score=131.11 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=95.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---C--Cc--------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---A--GV-------------------------- 242 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v-------------------------- 242 (360)
..++.+|||||||+|.++..++... ..+++++|+ +.+++.|++. . .+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467899999999998886665543 346899998 8888877532 0 00
Q ss_pred -----EEEecCCCC-----CCCCC--cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhh
Q 018145 243 -----EHVGGNMFE-----SVPEG--DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAAR 308 (360)
Q Consensus 243 -----~~~~~d~~~-----~~~~~--D~i~~~~vlh~~~~--~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~ 308 (360)
.....+... +.+.+ |+|++.+++||++. ++...+++++++.|||||++++.+........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~------ 201 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------ 201 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE------
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce------
Confidence 112222211 23333 99999999999763 46778999999999999999998875432100
Q ss_pred hhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEEe
Q 018145 309 ETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFAS 348 (360)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 348 (360)
..+. .......+.++|+++|+++||+++++..
T Consensus 202 ---~~~~-----~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 202 ---VGKR-----EFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp ---ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ---eccc-----cccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 0012345899999999999999888743
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.2e-14 Score=123.95 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHh----hCCCC--eEEEecc-hhHHHhCCCC-------CCcE--EEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITS----KYPQI--KAVNFDL-PHVVQDAPSY-------AGVE--HVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~~-------~~v~--~~~~d~ 249 (360)
..++..+...++..+|||||||+|.++..+++ .+++. +++++|. +.+++.+++. ..+. +...++
T Consensus 29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (280)
T d1jqea_ 29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS 108 (280)
T ss_dssp HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence 34444444244556999999999998777655 45554 5689998 7788776432 3333 333333
Q ss_pred C-------CCCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHh-h
Q 018145 250 F-------ESVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLM-T 319 (360)
Q Consensus 250 ~-------~~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (360)
. .+.+.. |+|++.+++||+++. ..+|++++++|+|||++++..+..+. . +...+..+... .
T Consensus 109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~~-----~--~~~l~~~~~~~~~ 179 (280)
T d1jqea_ 109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS-----G--WDKLWKKYGSRFP 179 (280)
T ss_dssp HHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS-----H--HHHHHHHHGGGSC
T ss_pred hhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCcc-----h--HHHHHHHHHHhcC
Confidence 2 122222 999999999999754 68999999999999999998753221 1 11111111110 0
Q ss_pred hcCCCccCCHHHHHHHHHHcCCceeeE
Q 018145 320 RDGGGRERTKKEYTELAIAAGFKGINF 346 (360)
Q Consensus 320 ~~~~~~~~t~~e~~~ll~~aGf~~~~~ 346 (360)
.......++.++|.++|.+.||+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 180 QDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred CCcccccCCHHHHHHHHHHCCCceEEE
Confidence 011234568899999999999985443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.5e-14 Score=126.55 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=81.7
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCC-CCCCC--cEEEeccccccCCh
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFE-SVPEG--DAILMKWILHCWDD 270 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~~--D~i~~~~vlh~~~~ 270 (360)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++. +++++..+|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4678999999999999999999999999999999 8899888653 789999999998 77655 99999888876
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 271 DHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 271 ~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+++++|+|||||++++..+..
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEECT
T ss_pred ------HHHHHHHhCCCcEEEEEeeCC
Confidence 467899999999999988643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=5e-14 Score=118.17 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=99.6
Q ss_pred cccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCC-CCCCC---cEEEec
Q 018145 192 YEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFE-SVPEG---DAILMK 262 (360)
Q Consensus 192 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~---D~i~~~ 262 (360)
++ ++++.+|||||||+|..+..+++..|+.+++++|+ |.+++.+++ .+++.++.+|... +.+.. ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 44 78899999999999999999999999999999999 888887654 3789999999887 33322 222333
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
+.+++.. +...+++++++.|||||++++.+.....+...+.. . ...+..+.+ ++||+
T Consensus 131 ~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~----~----------------~~~~~~~~l-~~gf~ 187 (209)
T d1nt2a_ 131 QDIAQKN--QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE----E----------------VFKSVLKEM-EGDFK 187 (209)
T ss_dssp ECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH----H----------------HHHHHHHHH-HTTSE
T ss_pred ecccChh--hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHH----H----------------HHHHHHHHH-HcCCE
Confidence 3454433 45678999999999999999987544322111100 0 011122233 37999
Q ss_pred eeeEEecCC---ceeEEEEe
Q 018145 343 GINFASCVC---NLYIMEFF 359 (360)
Q Consensus 343 ~~~~~~~~~---~~~vi~~~ 359 (360)
+++.+.+.+ .+.++.++
T Consensus 188 i~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 188 IVKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEEECTTTCTTEEEEEEE
T ss_pred EEEEEccCCCccCcEEEEEE
Confidence 999987753 45555543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=1e-14 Score=125.79 Aligned_cols=97 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-CCCCC--cEEEe-ccccccCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-SVPEG--DAILM-KWILHCWD 269 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~--D~i~~-~~vlh~~~ 269 (360)
.+++.+|||||||+|.++..+++. +.+++++|+ +.+++.|+++....++.+|+.+ +++.+ |+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 346689999999999999999886 568999998 8999998876545678889888 67654 99987 57899988
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+. .++|+++++.|||||.+++..+
T Consensus 118 d~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NK--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred hH--HHHHHHHHhhcCcCcEEEEEEC
Confidence 65 5689999999999999998764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=2.9e-14 Score=123.68 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=83.5
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CC-CC-C
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SV-PE-G 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~-~~-~ 256 (360)
+++.+ .+++.+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++ .++.+..+|+.. +. +. .
T Consensus 17 lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLY--TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHH--CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHh--CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 44444 3567899999999999999998874 347889998 8898887532 468999999976 43 23 3
Q ss_pred -cEEEeccccccC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCW--DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~--~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+|++..++||+ +.++...+|+++++.|||||++++..+
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 999999999986 346778999999999999999998643
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.47 E-value=4.6e-14 Score=103.27 Aligned_cols=95 Identities=54% Similarity=0.784 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS 97 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~ 97 (360)
+++..-..++++.+++.+.+|++|++|||||.|++.| ++|+.|||.+++.++|+.+..++|+||.|++.|++.+...
T Consensus 4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~ 83 (107)
T d1kyza1 4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 83 (107)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeee
Confidence 3445556789999999999999999999999999854 7899999999999666556689999999999999986532
Q ss_pred --CC---CceeecchhchhhhcC
Q 018145 98 --GG---ERLYALNPVSKYFVSN 115 (360)
Q Consensus 98 --~~---~~~y~~t~~s~~~~~~ 115 (360)
.+ ...|.+||.|+.|+.+
T Consensus 84 ~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 84 TQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp ECTTSCEEEEEEECHHHHHHSCC
T ss_pred cCCCCCeeeEEecchhHHhhcCC
Confidence 11 1369999999999875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=1.2e-13 Score=114.79 Aligned_cols=104 Identities=16% Similarity=0.287 Sum_probs=82.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~~~~- 256 (360)
.+++.++ ..++.+|||||||+|.++..+++.+++ ++++|+ +.+++.+++. .++++..+|+++..++.
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3455565 567899999999999999999998875 555565 8888877541 46899999998855543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++.-.+|+. .+....+++.+.+.|||||+++++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999998888754 4456789999999999999998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.1e-13 Score=119.24 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=98.5
Q ss_pred HHHHHhhcchhhHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEe
Q 018145 173 YHEAMFNHSTIAMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVG 246 (360)
Q Consensus 173 ~~~~m~~~~~~~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~ 246 (360)
|-...+..++...+.+.+ . .+++.+|||+|||+|.++..+++. +.+++++|+ |.+++.|+++ -++++..
T Consensus 99 FGTG~H~TT~l~l~~l~~-~--~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~ 173 (254)
T d2nxca1 99 FGTGHHETTRLALKALAR-H--LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLE 173 (254)
T ss_dssp ---CCSHHHHHHHHHHHH-H--CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEE
T ss_pred cCccccchhhHHHHHHHh-h--cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEe
Confidence 433333334444444333 2 356789999999999999988775 457888998 8899888753 3578889
Q ss_pred cCCCCCCCC--CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCC
Q 018145 247 GNMFESVPE--GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGG 324 (360)
Q Consensus 247 ~d~~~~~~~--~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (360)
+|+.+..+. .|+|+++...+ ....+++.++++|||||+|++.+....
T Consensus 174 ~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~~-------------------------- 222 (254)
T d2nxca1 174 GSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILKD-------------------------- 222 (254)
T ss_dssp SCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------
T ss_pred ccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecchh--------------------------
Confidence 987764443 39999864433 456789999999999999998764321
Q ss_pred ccCCHHHHHHHHHHcCCceeeEEecC
Q 018145 325 RERTKKEYTELAIAAGFKGINFASCV 350 (360)
Q Consensus 325 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 350 (360)
..+++.+.++++||+.++....+
T Consensus 223 ---~~~~v~~~~~~~Gf~~~~~~~~~ 245 (254)
T d2nxca1 223 ---RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp ---GHHHHHHHHHHTTCEEEEEEEET
T ss_pred ---hHHHHHHHHHHCCCEEEEEEEEC
Confidence 24567888999999998887654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.2e-14 Score=121.13 Aligned_cols=138 Identities=13% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CC---------------------------
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AG--------------------------- 241 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~--------------------------- 241 (360)
..++.+|||||||+|.+....+.... .+++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 45678999999999987654444433 37999998 8888876421 00
Q ss_pred ----cEEEecCCCCC-------CCC-C-cEEEeccccccCCh--hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchh
Q 018145 242 ----VEHVGGNMFES-------VPE-G-DAILMKWILHCWDD--DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSA 306 (360)
Q Consensus 242 ----v~~~~~d~~~~-------~~~-~-D~i~~~~vlh~~~~--~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~ 306 (360)
......|+.++ .+. . |+|++.++||+.+. ++..++|+++++.|||||+|++.+.......
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----- 205 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----- 205 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-----
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-----
Confidence 12344566542 112 2 99999999999763 3578899999999999999999987653210
Q ss_pred hhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCceeeEE
Q 018145 307 ARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGINFA 347 (360)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 347 (360)
...... ......+.++++++|+++||+++++.
T Consensus 206 -----~~~~~~----~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 -----LAGEAR----LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp -----EETTEE----EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred -----ccCCcc----cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 000000 01223589999999999999987654
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.40 E-value=4.3e-13 Score=98.27 Aligned_cols=98 Identities=45% Similarity=0.621 Sum_probs=79.2
Q ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCC----CCCHHHHHHHhCc--CCCCCcCcHHHHHHHHhcCcce
Q 018145 19 EEEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAG----ELSAPEIAAQLQA--QNVKAPMMLDRMLRLLVSHRVL 92 (360)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g----~~t~~~la~~~~~--~~~~~~~~~~~~L~~L~~~g~l 92 (360)
|++++..-..++++.+++.+.+|++|++|||||.|.+.| ++|+.|||.++++ ++|+.+..++|+||.|++.|++
T Consensus 1 ~~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf 80 (110)
T d1fp1d1 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVL 80 (110)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcc
Confidence 346677888999999999999999999999999999754 3799999999886 2222234699999999999999
Q ss_pred eecccC--C---CceeecchhchhhhcCC
Q 018145 93 ECSVSG--G---ERLYALNPVSKYFVSNK 116 (360)
Q Consensus 93 ~~~~~~--~---~~~y~~t~~s~~~~~~~ 116 (360)
.+.... + ...|.+||.++.|+.++
T Consensus 81 ~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 81 TSTTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccccCCCCCeeeEEecchhhHhhcCCC
Confidence 765321 1 12699999999998765
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.5e-14 Score=119.57 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=89.8
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC---CCCCC--cEEE----
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE---SVPEG--DAIL---- 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~---~~~~~--D~i~---- 260 (360)
..+.+|||||||+|..+..+++..+ .+++++|+ |.+++.|+++ .++.++.+|+.. +++.+ |.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4568999999999999999998764 47888888 8899887643 457777777643 34443 6665
Q ss_pred -eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHc
Q 018145 261 -MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAA 339 (360)
Q Consensus 261 -~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 339 (360)
....++|++ +...++++++++|||||+|++.+...... ......+ .......+.+...+.++
T Consensus 131 ~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~l~~a 193 (229)
T d1zx0a1 131 PLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 193 (229)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHT
T ss_pred cccccccccc--CHHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhhhh--------hcchhhhhHHHHHHHHC
Confidence 466667655 45689999999999999998754322110 0000000 00111234566778889
Q ss_pred CCceeeEE
Q 018145 340 GFKGINFA 347 (360)
Q Consensus 340 Gf~~~~~~ 347 (360)
||+..++.
T Consensus 194 gF~~~~i~ 201 (229)
T d1zx0a1 194 GFRRENIR 201 (229)
T ss_dssp TCCGGGEE
T ss_pred CCeeEEEE
Confidence 99876654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.6e-13 Score=119.15 Aligned_cols=110 Identities=13% Similarity=0.206 Sum_probs=89.5
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC---------------CCCcEEEecCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS---------------YAGVEHVGGNM 249 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~ 249 (360)
..+++.+. +++..+|||||||+|.++..+++.++..+++++|+ +.+++.|++ ..+|+++.+|+
T Consensus 141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 45666666 78889999999999999999999999889999998 777776642 25799999999
Q ss_pred CC-CCCC----CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 250 FE-SVPE----GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 250 ~~-~~~~----~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
.+ ++.+ +|+|++.+..| + ++....|+++.+.|||||++++.+...+.
T Consensus 220 ~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPL 271 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred cccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCC
Confidence 98 5432 38888876654 2 46678899999999999999998877654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=2.3e-12 Score=108.88 Aligned_cols=141 Identities=12% Similarity=0.047 Sum_probs=98.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCC----CCCCcEEEecCCCCC--CC--CC--cEEEec
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAP----SYAGVEHVGGNMFES--VP--EG--DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~d~~~~--~~--~~--D~i~~~ 262 (360)
++++.+|||+|||+|.++..+++.. |+.+++++|+ +.+++.++ ....+..+.+|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6789999999999999999999975 7889999998 77777654 346688888887662 22 12 66554
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCc
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFK 342 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 342 (360)
.+++. ++...+++++++.|||||++++.......+..... .....+..+++ +.||+
T Consensus 150 -d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~--------------------~~v~~~v~~l~-~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEP--------------------EQVFREVEREL-SEYFE 205 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCH--------------------HHHHHHHHHHH-HTTSE
T ss_pred -Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCH--------------------HHHHHHHHHHH-HcCCE
Confidence 34432 35567899999999999999997654432211100 00112334444 56999
Q ss_pred eeeEEecCC---ceeEEEEeC
Q 018145 343 GINFASCVC---NLYIMEFFK 360 (360)
Q Consensus 343 ~~~~~~~~~---~~~vi~~~k 360 (360)
+++.+.+.+ .+.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 999988754 478888876
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.35 E-value=4.6e-13 Score=114.75 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=79.2
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCCC-
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPEG- 256 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~~- 256 (360)
.++..++ .+++.+|||+|||+|.++..+++. .|..+++.+|. ++.++.|+++ .+|++..+|+.+.+++.
T Consensus 76 ~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 4566666 788999999999999999999987 58889999998 7788877642 57999999998865543
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|.|++ +++++ ..+|.+++++|||||+|++..+
T Consensus 155 fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 155 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 99986 34433 3579999999999999998654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.34 E-value=1.1e-12 Score=109.11 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.0
Q ss_pred ceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC-C--CCCC--cEEEeccccc
Q 018145 199 ERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-S--VPEG--DAILMKWILH 266 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~~~--D~i~~~~vlh 266 (360)
..|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..+|.++.+|+.. . ++.+ |.|++.+...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4799999999999999999999999999998 776665533 2689999999876 2 5544 9998888777
Q ss_pred cCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 267 CWDDDH------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 267 ~~~~~~------~~~~L~~i~~~LkpgG~lli~e 294 (360)
+....+ ...+|+.++++|||||.|+|..
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 544322 1479999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=8.3e-13 Score=116.81 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=77.0
Q ss_pred HhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCC---CCC
Q 018145 189 LEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFE---SVP 254 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~---~~~ 254 (360)
...+. ..+..+|||||||+|..+..+++. +.+++++|+ +.+++.|+++ .+..+...|+.. +.|
T Consensus 49 ~~~l~-~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T d1xvaa_ 49 LGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 125 (292)
T ss_dssp HHHHH-HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred HHHhh-hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence 33343 455689999999999999999987 468999999 8999887642 234566666653 222
Q ss_pred --CC-cEEEe-ccccccCCh-----hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 255 --EG-DAILM-KWILHCWDD-----DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 255 --~~-D~i~~-~~vlh~~~~-----~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.. |+|++ ..+++|+++ ++...+|++++++|||||+|++..
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 33 87765 568888764 467789999999999999988843
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.1e-11 Score=107.30 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=100.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCCCC--cEEEecc---
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVPEG--DAILMKW--- 263 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~~~--D~i~~~~--- 263 (360)
..+.+|||+|||+|..+..++..+|+.+++++|+ +.+++.|+++ .+|+++.+|++++.+.. |+|+++=
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4568899999999999999999999999999999 8888888653 57999999999976643 9999852
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCC
Q 018145 264 ----------ILHCWDD----------DHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGG 323 (360)
Q Consensus 264 ----------vlh~~~~----------~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (360)
++.+-|. ....++++.+.+.|+|||++++ |...
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~-------------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW-------------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS--------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc--------------------------
Confidence 1221111 2345788999999999999887 3210
Q ss_pred CccCCHHHHHHHHHHcCCceeeEEecCC-ceeEEEE
Q 018145 324 GRERTKKEYTELAIAAGFKGINFASCVC-NLYIMEF 358 (360)
Q Consensus 324 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~ 358 (360)
...+.+.+++++.||..+++...-. ..-++.+
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEE
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEE
Confidence 0235677899999999888876654 3335543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=1.1e-12 Score=113.05 Aligned_cols=105 Identities=14% Similarity=0.244 Sum_probs=87.0
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC---------CCcEEEecCCCC-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY---------AGVEHVGGNMFE-S 252 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~ 252 (360)
+..++..++ .+++.+|||+|||+|.++..|++. .|+.+++.+|. +++++.|+++ .++.++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 345667676 889999999999999999999998 68999999999 8888887642 679999999987 6
Q ss_pred CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 253 VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 253 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+++. |.|++ |++++ ..++.+++++|||||++++..++.
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 6654 99876 45655 367999999999999999877654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.3e-12 Score=109.78 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=80.4
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC-CCCC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES-VPEG 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~-~~~~ 256 (360)
..+++.+. ++++.+|||||||+|..+..+++.. ++.+++.+|. +.+++.|+++ .++.++.+|..+. ...+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 34556666 7889999999999999999999876 6788999998 8888887653 6788999998773 3232
Q ss_pred --cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 257 --DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 257 --D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|+|++..+++++++ .+.+.|||||+|++..
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 99999999998874 3567899999998843
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.8e-12 Score=112.29 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=97.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE 255 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~ 255 (360)
+..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|+++ +++.+...|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 345667676 8899999999999999999999886 7899999999 8888888653 5688888887665443
Q ss_pred C--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHH
Q 018145 256 G--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYT 333 (360)
Q Consensus 256 ~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 333 (360)
. |.|+ ++++++ ..+|++++++|||||+|++..++.. ..++..
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 7665 356654 4689999999999999998765321 123445
Q ss_pred HHHHHcCCceeeEEe
Q 018145 334 ELAIAAGFKGINFAS 348 (360)
Q Consensus 334 ~ll~~aGf~~~~~~~ 348 (360)
+.+++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 677888998777664
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.29 E-value=1.1e-12 Score=108.04 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=80.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC-CCC--C
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE-SVP--E 255 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~--~ 255 (360)
.++..+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.|+++ ++|+++.+|+.+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 3445555 6788999999999999999998875 47888888 8888888653 589999999877 333 3
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.|+|++....++ ...+++.+.+.|||||++++...
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 399999876654 34689999999999999987654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.26 E-value=1.3e-11 Score=102.56 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=75.5
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC---CCCCC--cEEEecccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE---SVPEG--DAILMKWIL 265 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~--D~i~~~~vl 265 (360)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..+|.++.+|+.+ .++.. |.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 35799999999999999999999999999998 666666533 2689999999876 24544 888876654
Q ss_pred ccCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDH------CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~------~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+....+ ...+|+.+++.|||||.|.+..
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4322111 1578999999999999998864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=6e-12 Score=114.69 Aligned_cols=110 Identities=14% Similarity=0.251 Sum_probs=85.1
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------------CCcEE-EecC
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------AGVEH-VGGN 248 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~-~~~d 248 (360)
..+++.+. ++++.+|||||||+|..+..+++.++..+++|+|+ +.+++.|++. ..+.+ ..++
T Consensus 206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 45667776 78889999999999999999999999889999999 8888877542 22333 4555
Q ss_pred CCC-C-----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 249 MFE-S-----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 249 ~~~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
+.+ + ++.+|+|++.+.+| +++....|+++.+.|||||+|++.+...+.
T Consensus 285 f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~ 338 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKVGCKIISLKSLRSL 338 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred hhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence 554 2 22348888876554 346788999999999999999998876654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.8e-11 Score=103.44 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=78.2
Q ss_pred HHHhhcc-cCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC-----------CCcEEEecCCCC-
Q 018145 187 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGGNMFE- 251 (360)
Q Consensus 187 ~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~- 251 (360)
.+++.+. ..+++.+|||||||+|+.+..+++. .|..+++++|. +++++.|++. .++.++.+|...
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 4444442 2577899999999999999888885 46789999998 8888877542 568999999887
Q ss_pred CCCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 252 SVPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 252 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+.+ |+|++..++++.++ .+.+.|||||+|++.-
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 33333 99999999998763 3567899999999843
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.8e-11 Score=105.88 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=87.4
Q ss_pred HHHHHHhhcchh----hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhh-CCCCeEEEecc-hhHHHhCCCC------
Q 018145 172 TYHEAMFNHSTI----AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSK-YPQIKAVNFDL-PHVVQDAPSY------ 239 (360)
Q Consensus 172 ~~~~~m~~~~~~----~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------ 239 (360)
.|...|....+. .+..|+..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|+++
T Consensus 70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~ 148 (324)
T d2b25a1 70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD 148 (324)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence 344455544443 2446677777 889999999999999999999987 58899999998 8888776531
Q ss_pred -----------CCcEEEecCCCCC---CCCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 240 -----------AGVEHVGGNMFES---VPEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 240 -----------~~v~~~~~d~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
++|++..+|+.+. ++.. |.|++ +++++. .+|.+++++|||||+|++.-++.
T Consensus 149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred hhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCCH
Confidence 5799999998762 2332 98876 445432 47999999999999999876544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.3e-10 Score=103.54 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=72.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCCCC-CCCCC--cEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh 266 (360)
++.+|||||||+|.++..+++..+ .+++++|..+....+++ .++|+++.+|+.+ +.+.. |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999998888643 47888887333333221 2679999999998 66543 9998877766
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCcEEEE
Q 018145 267 CWDD-DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 267 ~~~~-~~~~~~L~~i~~~LkpgG~lli 292 (360)
.+.. .....++..+++.|||||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6443 3567899999999999999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=1.6e-10 Score=103.56 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=72.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC-------CCCcEEEecCCCC-CCCCC--cEEEeccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS-------YAGVEHVGGNMFE-SVPEG--DAILMKWILH 266 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~--D~i~~~~vlh 266 (360)
++.+|||||||+|.++..+++.. ..+++++|...+++.+++ ..+++++.+|+.+ +.|.. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 46899999999999998777754 457888888555554433 2679999999988 66643 9999877666
Q ss_pred cCCh-hHHHHHHHHHHHhCCCCcEEEE
Q 018145 267 CWDD-DHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 267 ~~~~-~~~~~~L~~i~~~LkpgG~lli 292 (360)
.... .....++..+.+.|||||+++-
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 5443 3566789999999999998863
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.01 E-value=4e-10 Score=92.81 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCcchHH----HHHHhhC----CCCeEEEecc-hhHHHhCCCC---------------------------
Q 018145 196 QNVERLVDVGGGFGVTL----SMITSKY----PQIKAVNFDL-PHVVQDAPSY--------------------------- 239 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~~--------------------------- 239 (360)
.++.||+++|||+|.-. ..+.+.. +.+++++.|+ +.+++.|+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45689999999999743 3334332 3457888888 8888876421
Q ss_pred ----------CCcEEEecCCCCC--CC-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 240 ----------AGVEHVGGNMFES--VP-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 240 ----------~~v~~~~~d~~~~--~~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
..+.+...+...+ .+ .. |+|+|.++|++++++...+++++++++|+|||.|++-.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1245666666652 22 23 99999999999999999999999999999999988743
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.00 E-value=2e-10 Score=96.48 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=74.9
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----CCCcEEEecCCCCCCC-CC--cE
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----YAGVEHVGGNMFESVP-EG--DA 258 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~-~~--D~ 258 (360)
.+++.+. ++++.+|||||||+|+++..+++.. .+++.+|. +..++.|++ ..++.++.+|.....+ .+ |+
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 4556666 7889999999999999998888875 46777776 777776643 3789999999877433 23 99
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
|++...+++.++ .+.+.|||||+|++.
T Consensus 138 Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 999999988763 345789999999884
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.8e-10 Score=98.55 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=73.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC------CCCCcEEEecCCCC-CCCC-C-cEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP------SYAGVEHVGGNMFE-SVPE-G-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~-~~~~-~-D~i~~~~v 264 (360)
..++.+|||||||+|.++..+++..+ .+++++|. +.+....+ ..++++++.+|+.+ +.+. . |+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44578999999999999998888754 57889998 44332111 12679999999988 5553 3 99999877
Q ss_pred cccCChh-HHHHHHHHHHHhCCCCcEEEE
Q 018145 265 LHCWDDD-HCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 265 lh~~~~~-~~~~~L~~i~~~LkpgG~lli 292 (360)
.|+...+ ....++....+.|||||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7775544 455777778899999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=1.1e-09 Score=91.95 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHhhcc-cCCCcceEEEEcCCcchHHHHHHhhC------CCCeEEEecc-hhHHHhCCCC-----------CCcEEEec
Q 018145 187 RILEHYE-GFQNVERLVDVGGGFGVTLSMITSKY------PQIKAVNFDL-PHVVQDAPSY-----------AGVEHVGG 247 (360)
Q Consensus 187 ~i~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~ 247 (360)
.+++.+. .++++.+|||||||+|+.+..+++.. +..+++.+|. ++.++.++++ .+|.++.+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4455442 26788999999999999998887753 4567888887 7888777542 47999999
Q ss_pred CCCCCC-CCC--cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 248 NMFESV-PEG--DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 248 d~~~~~-~~~--D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
|..+.. +.+ |+|++...+++.|+ .+.+.|||||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 988733 333 99999999988773 356799999999874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.89 E-value=8.8e-10 Score=91.85 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=75.3
Q ss_pred HHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-CC-
Q 018145 186 ERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP-EG- 256 (360)
Q Consensus 186 ~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~-~~- 256 (360)
..+++.+. .+++.+|||||||+|+.+..+++-. +.+++.+|. +++++.+++. .++.++.+|..+..+ .+
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 34555566 7888999999999999998887764 345666666 7777777642 789999999987433 33
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
|+|++...++..|+. +.+.|+|||+|++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 999999999887742 45679999999874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=9.7e-10 Score=89.97 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=86.6
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCC-C----
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFE-S---- 252 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~---- 252 (360)
+..++++.+. ..++..+||++||+|.++..+++.+|+.+++++|. +.+++.+++. .++.++.+++.+ .
T Consensus 11 ll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 11 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 3456777776 67789999999999999999999999999999999 8999988652 689999999865 2
Q ss_pred -CC-CC-cEEEecccccc--C-----ChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 253 -VP-EG-DAILMKWILHC--W-----DDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 253 -~~-~~-D~i~~~~vlh~--~-----~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.+ .. |.|++-.-+.. + .-......|..+.+.|+|||+++++.+..
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 22 22 88776322210 0 11234578999999999999999988654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=1e-08 Score=88.00 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCCC--CcEEEeccc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVPE--GDAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~i~~~~v 264 (360)
.+++.+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ ++|+++.+|+.+-.++ .|.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 356789999999999999999987 4578999999 8888877542 5799999999884333 398887522
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchhhhhhhhhhHHHhhhcCCCccCCHHHHHHHHHHcCCcee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPEVSSAARETSLLDVLLMTRDGGGRERTKKEYTELAIAAGFKGI 344 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 344 (360)
.....+|..+.+.|+|||.|.+.+.+.... ......+.+.++.++.||++.
T Consensus 184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred ------CchHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 123457888999999999998876653221 001234567788888999764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=5.2e-07 Score=76.68 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=56.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC----C---CC--CcE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES----V---PE--GDA 258 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~----~---~~--~D~ 258 (360)
.+..++||||||+|..+..++++.|+.+++++|+ +.+++.|++. .++.++..+.... . .. .|+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3457999999999999999999999999999999 8888888653 6788887654431 1 12 299
Q ss_pred EEecccccc
Q 018145 259 ILMKWILHC 267 (360)
Q Consensus 259 i~~~~vlh~ 267 (360)
|+++=-.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999877764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.45 E-value=6.5e-08 Score=76.01 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=66.8
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC--CCC--CCcEEEeccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE--SVP--EGDAILMKWI 264 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~--~~~--~~D~i~~~~v 264 (360)
.+.+|||+|||+|.++.+.+.+.. .+++.+|. +.+++.+++. ++++++.+|+.+ ..+ ..|+|++---
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 468999999999999998888765 38888888 7777765432 579999999876 222 2399988422
Q ss_pred cccCChhHHHHHHHHHH--HhCCCCcEEEEE
Q 018145 265 LHCWDDDHCLRILKNCY--KAVPGNGKVIVM 293 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~--~~LkpgG~lli~ 293 (360)
. ........|..+. +.|+|||.+++-
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 1 1234456677665 458999988763
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=4.5e-08 Score=81.42 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=71.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC-------CC--c
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP-------EG--D 257 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~-------~~--D 257 (360)
.++.+|||||||+|..+..+++..+ +.+++.+|. +...+.+++. ++|+++.||..+..+ .. |
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4578999999999999999999875 589999998 7777777542 579999999875221 12 8
Q ss_pred EEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 258 AILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
+|++-+. | ........+....+.|||||.+++-+..+
T Consensus 135 ~ifiD~~-~--~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 135 MVFLDHW-K--DRYLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp EEEECSC-G--GGHHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred eeeeccc-c--cccccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 8887521 1 11122335777788999999766544333
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1e-07 Score=79.43 Aligned_cols=99 Identities=12% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCC-------CCCcEEEecCCCCCC--------CC-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS-------YAGVEHVGGNMFESV--------PE-G 256 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~--------~~-~ 256 (360)
..++.+|||||||+|..+..+++..| +.+++.+|. +...+.|++ .++++++.||+.+.. +. .
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45679999999999999999999987 688999987 777666654 268999999986521 22 2
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 257 DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 257 D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
|+|+.-. ....-...+..+.+.|+|||.+++-+..++
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~ 173 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR 173 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 9998853 123446788999999999999998666553
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.36 E-value=1.2e-07 Score=83.21 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC-----------CCCcEEEecCCCCC---CCCC-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS-----------YAGVEHVGGNMFES---VPEG-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~---~~~~-D~i 259 (360)
+.+.+||.||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+- .+.. |+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 5678999999999999999999888888988888 888887653 26899999999872 2333 999
Q ss_pred Eeccc--ccc-CChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 260 LMKWI--LHC-WDDD--HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 260 ~~~~v--lh~-~~~~--~~~~~L~~i~~~LkpgG~lli~e 294 (360)
++-.. ... -+.. -...+++.+++.|+|||.+++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 86321 111 0111 12478999999999999988754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=2.9e-07 Score=78.87 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=53.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCCC----CCcEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESVP----EGDAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~----~~D~i~~~ 262 (360)
.+..+++|+|||+|..+..+++ +|+.+++++|. +.+++.|+++ .++.+..+|++++.+ ..|+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3456899999999999999874 69999999999 8888887653 578899999988543 23999885
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.29 E-value=2.2e-07 Score=75.74 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.9
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-CCcEEEecCCCCCCCCCcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-AGVEHVGGNMFESVPEGDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~~~~~~D~i~~~ 262 (360)
.+.+|||+|||+|.++..++...+ .+++++|. +.+++.|+++ .+++++.+|+.+.....|+|+++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence 358999999999999987777654 46788887 8888887764 67999999987632334999986
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.28 E-value=3.6e-07 Score=80.84 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCC---C---CC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFES---V---PE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~---~~-~D~i~ 260 (360)
+++.+|||++||+|.++..++.... .+++.+|+ +.+++.++++ ++++++.+|+++. . .. .|+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 5678999999999999999888753 48999998 8888877653 4689999998762 1 12 29999
Q ss_pred ec---cccccCCh----hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 261 MK---WILHCWDD----DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~---~vlh~~~~----~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+. +..+.-.. ..-.++++.+.+.|+|||.|+....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 83 22221111 1224578889999999999998764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=2.5e-07 Score=80.18 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=74.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----------CCcEEEecCCCCC---CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----------AGVEHVGGNMFES---VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~d~~~~---~~~~-D~i~ 260 (360)
+.+.+||-||+|.|..+..+++..|..+++++|+ |.+++.+++. +|++++.+|..+- .+.. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4578999999999999999999888788888888 8899887652 7899999999772 2233 9998
Q ss_pred eccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+-..-..-... --..+++.+++.|+|||.+++.-
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 74221110110 12578999999999999988764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.24 E-value=4.6e-07 Score=78.15 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------------CCCcEEEecCCCCC--CCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------------YAGVEHVGGNMFES--VPE 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~~~~--~~~ 255 (360)
.+++.+||.||+|.|..+..+++ +|..+++++|+ |.+++.+++ .+|++++.+|...- ..+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35678999999999999999987 45568888888 899887752 36899999998762 222
Q ss_pred C-cEEEeccccccCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 018145 256 G-DAILMKWILHCWDDDH---CLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 256 ~-D~i~~~~vlh~~~~~~---~~~~L~~i~~~LkpgG~lli~e 294 (360)
. |+|++-.. ...+... -..+++.+++.|+|||.+++.-
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 3 99987332 2222111 1478999999999999988754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.23 E-value=4e-07 Score=76.91 Aligned_cols=90 Identities=10% Similarity=0.251 Sum_probs=67.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC----CCcEEEecCCCC-CCCCC-c
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY----AGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~~~~-D 257 (360)
.+.+++.+. ..+..+|||||||+|.++..|++... +++++|. +.+++.+++. ++++++.+|+.+ +.+.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 456777666 67789999999999999999999854 5666666 7777777653 679999999999 77755 5
Q ss_pred EEEeccccccCChhHHHHHH
Q 018145 258 AILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 258 ~i~~~~vlh~~~~~~~~~~L 277 (360)
..+.++.=++.+.+-...++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 65666766777865443433
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=5e-07 Score=77.71 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC--C-CCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE--S-VPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~-~~~~-D~i~ 260 (360)
..+.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... . .++. |+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998877778888888 888887754 2789999999876 2 2233 9998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+-..-..-+.. --..+++.+++.|+|||.++..-
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 64221110000 12468999999999999988754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=5.4e-07 Score=77.83 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC---CCCCC-cEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPEG-DAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~~~-D~i~ 260 (360)
+.+.+||-||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|... ..++. |+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998877888988888 999988864 2799999999876 22333 9998
Q ss_pred eccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+-. .+..... --..+++.+++.|+|||.+++.-
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 742 2211111 12367999999999999998764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.15 E-value=7.4e-07 Score=77.20 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCC---CCCC-C-cEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFE---SVPE-G-DAI 259 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~~-~-D~i 259 (360)
+++.+||=||+|.|..+.++++..|-.+++++|+ |.+++.+++ .+|++++.+|..+ ..++ . |+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999999877778888888 889888865 2789999999876 2333 2 999
Q ss_pred EeccccccCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 260 LMKWILHCWDDD---HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 260 ~~~~vlh~~~~~---~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+.-.. ...... --..+++.+++.|+|||.+++.-
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 86322 111111 12468999999999999999865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.13 E-value=4.8e-07 Score=75.54 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC---------C-C
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV---------P-E 255 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~---------~-~ 255 (360)
..++.+|||||+++|.-+..+++..| +.+++.+|. +...+.|++. ++|+++.+|+.+.. . .
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 34679999999999999999999987 578888887 7777666542 67999999987521 1 2
Q ss_pred CcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 256 GDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 256 ~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.|+|++-. .. ..-...++.+.+.|+|||.+++-+..+
T Consensus 137 fD~iFiDa----~k-~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 137 YDFIFVDA----DK-DNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp BSEEEECS----CS-TTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred eeEEEecc----ch-hhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 39999843 11 245678999999999999998866554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.13 E-value=5.6e-07 Score=79.33 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=70.3
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCC---C---CC-CcEEEec
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFES---V---PE-GDAILMK 262 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~---~---~~-~D~i~~~ 262 (360)
.+.+|||++||+|.++..+++. ..+++.+|. +.+++.++++ .+++++.+|.++. . .. .|+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 5789999999999999998764 457888998 8888887653 5789999998762 1 12 3999973
Q ss_pred cccccCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDD-------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~-------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
---...+. ..-..+++.+.+.|||||.|++...
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111111 1234688999999999999987653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.13 E-value=6.6e-07 Score=77.86 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=72.1
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC----------CCCcEEEecCCCCC---CCC-CcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS----------YAGVEHVGGNMFES---VPE-GDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~~~-~D~i~ 260 (360)
+.+.+||-||+|.|..+.++++..|-.+++.+|+ |.+++.+++ .+|++++.+|..+- .+. .|+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4678999999999999999998777678888888 888887754 27899999998772 223 39998
Q ss_pred eccccccCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 018145 261 MKWILHCWDDD--HCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 261 ~~~vlh~~~~~--~~~~~L~~i~~~LkpgG~lli~e 294 (360)
+-..-..-+.. -...+++.+++.|+|||.++..-
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 74321111111 13467999999999999998764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.10 E-value=3.8e-06 Score=70.39 Aligned_cols=85 Identities=9% Similarity=0.257 Sum_probs=60.8
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCC----CCCCcEEEecCCCC-CCCCC-c
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SYAGVEHVGGNMFE-SVPEG-D 257 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~~v~~~~~d~~~-~~~~~-D 257 (360)
..+.+++... ..++.+|||||||+|.++..|++....+.++-.| +..++..+ ..++++++.+|+.+ +.+.. .
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D-~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID-HKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC-HHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeec-cchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 3456777666 6788999999999999999999986544444444 66665443 34789999999998 66655 5
Q ss_pred EEEeccccccCCh
Q 018145 258 AILMKWILHCWDD 270 (360)
Q Consensus 258 ~i~~~~vlh~~~~ 270 (360)
..+.++.=++.+.
T Consensus 87 ~~vv~NLPYnIss 99 (235)
T d1qama_ 87 YKIFGNIPYNIST 99 (235)
T ss_dssp CEEEEECCGGGHH
T ss_pred ceeeeeehhhhhH
Confidence 5555555555443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.07 E-value=1.3e-06 Score=75.98 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC------C-CCcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------P-EGDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~------~-~~D~ 258 (360)
..++.+|||+.||+|.++..++.. +.+++.+|. +.+++.|+++ .+++|+.+|+++.. . ..|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999988876 457999998 7888887652 36999999998621 1 2399
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 259 ILMK---WILH----CWD-DDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 259 i~~~---~vlh----~~~-~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
|++- +.-. .+. ..+...+++.+.+.|+|||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9972 1110 011 234556788899999999987777654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.05 E-value=4.2e-06 Score=68.46 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=51.0
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCCCcEEEecccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPEGDAILMKWIL 265 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~~D~i~~~~vl 265 (360)
.+.+|||+|||+|.++..++... ..+++++|+ +.+++.++++ .++++..+|+.+.....|+|++.=-.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 45799999999999999877764 357888888 7777776542 46788888876643345999985443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=3.9e-06 Score=67.61 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=65.2
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCC--CCC-CC-cEEEeccccc
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFE--SVP-EG-DAILMKWILH 266 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~--~~~-~~-D~i~~~~vlh 266 (360)
+.+|||++||+|.++.+.+.+... +++.+|. +.+++.+++. .+++++.+|+++ ... .. |+|++-=-..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 479999999999999998887654 7888887 7777755432 568899999876 222 22 9999953322
Q ss_pred cCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 018145 267 CWDDDHCLRILKNCYK--AVPGNGKVIVM 293 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~--~LkpgG~lli~ 293 (360)
......++..+.+ .|+|+|.+++-
T Consensus 123 ---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 2234556666655 58999877763
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.2e-05 Score=65.72 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=70.6
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-h---hHHHhCC---CCCCcEEEecCCCCCCC--CCcEEEecccccc
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAP---SYAGVEHVGGNMFESVP--EGDAILMKWILHC 267 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~---~~~~v~~~~~d~~~~~~--~~D~i~~~~vlh~ 267 (360)
++.+|+|||+|.|.-+.-++-.+|+.+++.+|. . ..++.+. ...++++++..+.+..+ ..|+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 346899999999999999999999999999996 2 2333322 13679999999887323 23998887653
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 268 WDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 268 ~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
....++.-+...++|+|++++.-
T Consensus 143 ----~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ----SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEC
Confidence 23568888899999999999866
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.86 E-value=2.8e-05 Score=64.24 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHhhcccCCCcceEEEEcCCcchHHHHHHhhCCC-CeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-CCCC-cEEEecc
Q 018145 188 ILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQ-IKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-VPEG-DAILMKW 263 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-~~~~-D~i~~~~ 263 (360)
+++.+. .+++.+|||.|||+|.++..+.+..+. ..++++|+ +..+..++ ...+..+|++.. .... |+++..-
T Consensus 11 m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ii~np 86 (223)
T d2ih2a1 11 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDLILGNP 86 (223)
T ss_dssp HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccceecccC
Confidence 344444 456789999999999999998887665 56788887 55544333 357788888763 2233 8888754
Q ss_pred ccccCC---h------------------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 264 ILHCWD---D------------------------DHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 264 vlh~~~---~------------------------~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
-..... . +--..++.++.+.|+|||++.++-+
T Consensus 87 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 87 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 432110 0 0123567899999999999998865
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=2.1e-06 Score=68.41 Aligned_cols=94 Identities=18% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCC---C-CCC-CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFE---S-VPE-GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~---~-~~~-~D~i~~ 261 (360)
...+.+|||+|||+|.++.+.+.+. .+++.+|. +.+++.+++. .++....+|.+. . ..+ .|+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 3456899999999999999888874 46778888 8888877643 334444444322 1 112 399988
Q ss_pred ccccccCChhHHHHHHHHH--HHhCCCCcEEEEEe
Q 018145 262 KWILHCWDDDHCLRILKNC--YKAVPGNGKVIVMN 294 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i--~~~LkpgG~lli~e 294 (360)
.=-.+ ... ...+..+ ...|+|||.+++..
T Consensus 117 DPPY~-~~~---~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 117 APPYA-MDL---AALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCCTT-SCT---THHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccccc-cCH---HHHHHHHHHcCCcCCCeEEEEEe
Confidence 42221 111 1223333 35789999877643
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.85 E-value=0.00022 Score=62.78 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=93.0
Q ss_pred CCcceEEEEcCCcchHHH--------HHHhh--------CCCCeEEEecchh-----HHHhCCC---C-C--CcEEEecC
Q 018145 196 QNVERLVDVGGGFGVTLS--------MITSK--------YPQIKAVNFDLPH-----VVQDAPS---Y-A--GVEHVGGN 248 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~--------~l~~~--------~p~~~~~~~D~~~-----~~~~a~~---~-~--~v~~~~~d 248 (360)
.+..+|+|+||.+|..+. .+.+. -|..++..-|+|. .-..... . + -+.-+.|.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 345789999999997763 22221 2556677778752 1111111 1 1 15667889
Q ss_pred CCC-CCCCC--cEEEeccccccCCh-------------------------------hHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 249 MFE-SVPEG--DAILMKWILHCWDD-------------------------------DHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 249 ~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
|.+ -+|.. |+++++.+||+++. .|...+|+.=.+-|+|||+++++-
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 998 67876 99999999999752 244568888888999999999988
Q ss_pred eecCCCCCCchh-----h-hhhhhhhHHHhhhcCC---------CccCCHHHHHHHHHHcC-CceeeE
Q 018145 295 SIVPEIPEVSSA-----A-RETSLLDVLLMTRDGG---------GRERTKKEYTELAIAAG-FKGINF 346 (360)
Q Consensus 295 ~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~---------~~~~t~~e~~~ll~~aG-f~~~~~ 346 (360)
..+++....... . ....+.++........ --.++.+|+++.+++.| |.+.++
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred eccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 887653221100 0 0011222211110000 11258999999999987 665554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.85 E-value=3.2e-06 Score=74.20 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=70.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCCCC------CC-CcE
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFESV------PE-GDA 258 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~~~------~~-~D~ 258 (360)
..++.+|||+.||+|.++...+.. ...+++.+|. +..++.++++ .+++++.+|+++.. .. .|+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 345789999999999999877664 3456888888 7777766532 46899999997621 12 299
Q ss_pred EEec--------cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 259 ILMK--------WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 259 i~~~--------~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|++- ..++.. ..+-.++++.+.+.|+|||.|++...
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9972 111110 12345789999999999999998653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=1.7e-05 Score=63.45 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=79.6
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCC--CCCcEEEecCCCC-C-----CC
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPS--YAGVEHVGGNMFE-S-----VP 254 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~-----~~ 254 (360)
...++++.+. ..++..++|..+|.|.++..+++. +.+++++|. |.+++.++. .+++.++.+++.+ . ..
T Consensus 6 ll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 6 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 3456777666 677899999999999999999997 467888888 888887754 3789999998865 2 11
Q ss_pred -CC-cEEEecccc-----ccCCh--hHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 255 -EG-DAILMKWIL-----HCWDD--DHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 255 -~~-D~i~~~~vl-----h~~~~--~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
.. |.|++-.-+ .+-.. ......|....+.|+|||+++++.+-
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 22 777762211 11000 12345789999999999999998863
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=5.5e-05 Score=60.36 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=75.6
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecchhHHHhCCCCCCcEEEecCCCC-CC--------C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDLPHVVQDAPSYAGVEHVGGNMFE-SV--------P 254 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~--------~ 254 (360)
..+|.+.+.-+++..+||||||+.|.++..+.+.. +...++++|+..+ ...+++.++.+|+.+ .. .
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 34566666646788999999999999999888765 4577899997432 234779999999986 21 1
Q ss_pred C--CcEEEeccccccCChh---------HHHHHHHHHHHhCCCCcEEEEEee
Q 018145 255 E--GDAILMKWILHCWDDD---------HCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 255 ~--~D~i~~~~vlh~~~~~---------~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. .|+|++-....--... -+...|.-+.+.|+|||.+++=-+
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 2 2999885554322211 133567778899999999998554
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.82 E-value=1.1e-05 Score=71.09 Aligned_cols=101 Identities=10% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-----CCCeEEEecc-hhHHHhCCCC-----CCcEEEecCCCCCCCC--CcEEEe
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-----PQIKAVNFDL-PHVVQDAPSY-----AGVEHVGGNMFESVPE--GDAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~~~~~--~D~i~~ 261 (360)
.+++.+|+|.+||+|.++..+.++. ++.+++++|+ +.+++.|+.. ....+..+|.....+. .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 4567899999999999999887643 4557888888 7777766532 5678888888774332 399998
Q ss_pred ccccccCChhH----------------HHHHHHHHHHhCCCCcEEEEEee
Q 018145 262 KWILHCWDDDH----------------CLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 262 ~~vlh~~~~~~----------------~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
+--+......+ -..++.++.+.|+|||+++++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 64332111111 12369999999999999988775
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.81 E-value=5.2e-05 Score=62.67 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=66.4
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHh----CCCC--CCcEEEecCCCCCCC-C-C
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQD----APSY--AGVEHVGGNMFESVP-E-G 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~--~~v~~~~~d~~~~~~-~-~ 256 (360)
..++.+.+- +++..+|+|+|||.|.++..++...+...+.++++-.-... .... +-+++...+.....+ . .
T Consensus 55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 345555554 67778999999999999999888766556655554111100 0111 235666665444333 3 3
Q ss_pred cEEEeccccccCCh-----hHHHHHHHHHHHhCCCCcEEEEE
Q 018145 257 DAILMKWILHCWDD-----DHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 257 D~i~~~~vlh~~~~-----~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
|+|+|-..=+ -++ ....++|.-+.+.|+|||.+++-
T Consensus 134 D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 9999854322 121 22346788888999999988773
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.70 E-value=1.7e-05 Score=53.56 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=47.5
Q ss_pred hChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhc
Q 018145 47 LGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVS 109 (360)
Q Consensus 47 lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s 109 (360)
+.|++.+... +|.|+.|||+++|+ +..-+.|+|..|+..|++.+. .++.|.+++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~---~~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC---CCCCEeecHHH
Confidence 4567777764 48999999999999 999999999999999999983 56789888654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.62 E-value=5.6e-05 Score=62.89 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-h---hHHHhCCC---CCCcEEEecCCCC-C----CCCC-cEEEec
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-P---HVVQDAPS---YAGVEHVGGNMFE-S----VPEG-DAILMK 262 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~-~----~~~~-D~i~~~ 262 (360)
....+++|||+|.|.-+.-++=.+|+.+++.+|. . ..++.+.. ..++.+++..+.+ . ..+. |+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3567999999999999999998999999999996 2 23333222 3678888876654 1 2223 999997
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
.+- ....++.-+...++|||++++.-
T Consensus 149 Ava------~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 149 AVA------RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CCS------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhh------CHHHHHHHHhhhcccCCEEEEEC
Confidence 653 34578999999999999999866
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.62 E-value=0.00013 Score=60.58 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=63.5
Q ss_pred CcceEEEEcCCcchHHHHHHh----hCCCCeEEEecc-hhHHHhC-CCCCCcEEEecCCCC-C-C---CC--CcEEEecc
Q 018145 197 NVERLVDVGGGFGVTLSMITS----KYPQIKAVNFDL-PHVVQDA-PSYAGVEHVGGNMFE-S-V---PE--GDAILMKW 263 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~~d~~~-~-~---~~--~D~i~~~~ 263 (360)
+|.+|||||++.|.-+..++. ..++.+++++|+ +...... ....+|+++.+|..+ . + .+ .|+|+.=.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 368999999999987665443 236788999997 4433322 223789999999765 2 1 22 27777643
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
. |.. +....-+ .....|+|||++++-|..
T Consensus 160 ~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 160 A-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp S-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred C-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 3 542 2333334 356899999999987753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.59 E-value=2.6e-05 Score=62.47 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=66.6
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEecCCCCCC------C-CCcEEE
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVGGNMFESV------P-EGDAIL 260 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~------~-~~D~i~ 260 (360)
..+.+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.++++ .++++..+|+++.+ . ..|+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 3568999999999999999888864 36777887 7777766542 47999999987621 1 239998
Q ss_pred eccccccCChhHHHHHHHHHHH--hCCCCcEEEEEee
Q 018145 261 MKWILHCWDDDHCLRILKNCYK--AVPGNGKVIVMNS 295 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~--~LkpgG~lli~e~ 295 (360)
+-=-.. ......+|..+.+ .|+|+|.++ +|.
T Consensus 119 lDPPY~---~~~~~~~l~~i~~~~~L~~~giIi-~E~ 151 (182)
T d2fhpa1 119 LDPPYA---KQEIVSQLEKMLERQLLTNEAVIV-CET 151 (182)
T ss_dssp ECCCGG---GCCHHHHHHHHHHTTCEEEEEEEE-EEE
T ss_pred echhhh---hhHHHHHHHHHHHCCCCCCCEEEE-EEc
Confidence 842211 2234567777755 589999766 454
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00032 Score=59.66 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=55.1
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCC----CC---CCcEEEecCCCC-CCCCC
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAP----SY---AGVEHVGGNMFE-SVPEG 256 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~---~~v~~~~~d~~~-~~~~~ 256 (360)
.+.+++... ..+...|||||+|.|.++..|++....+.++-.| +..++..+ .. .+++++.+|+.+ +.+..
T Consensus 10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~ 87 (278)
T d1zq9a1 10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 87 (278)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhhhh
Confidence 456666665 6677899999999999999999997665566556 55444332 21 579999999998 66655
Q ss_pred cEEEec
Q 018145 257 DAILMK 262 (360)
Q Consensus 257 D~i~~~ 262 (360)
+.|+.+
T Consensus 88 ~~vV~N 93 (278)
T d1zq9a1 88 DTCVAN 93 (278)
T ss_dssp SEEEEE
T ss_pred hhhhcc
Confidence 666554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=4.8e-05 Score=64.02 Aligned_cols=84 Identities=11% Similarity=0.180 Sum_probs=57.4
Q ss_pred hHHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC----CCCcEEEecCCCC-CCCC---
Q 018145 184 AMERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS----YAGVEHVGGNMFE-SVPE--- 255 (360)
Q Consensus 184 ~~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~d~~~-~~~~--- 255 (360)
..+.+++... ..++..|||||||.|.++..|++....+.++-.| +..++..+. .++++++.+|+.+ +.++
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD-RDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC-HHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec-cchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence 3456666665 6678899999999999999999987655555555 666665433 2679999999987 4332
Q ss_pred --C-cEEEeccccccCC
Q 018145 256 --G-DAILMKWILHCWD 269 (360)
Q Consensus 256 --~-D~i~~~~vlh~~~ 269 (360)
+ -+.+..+.=++.+
T Consensus 87 ~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 87 KMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HHTSCEEEEEECCTTTH
T ss_pred ccCCCeEEEecchHHHH
Confidence 1 2445555444444
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.10 E-value=0.00011 Score=52.40 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=53.9
Q ss_pred HHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 43 AAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 43 ~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
.-.++.|+..|...|+.|+.+||+.+++ .+..+.+.|+.|...|+|++.....+. .|++|+.|....
T Consensus 15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~ 84 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA 84 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred CHHHHHHHHHhccCCCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence 3446778888876679999999999999 899999999999999999875322222 599999887543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.92 E-value=0.0033 Score=53.83 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------CCCcEEEecCCCCCCC----------CC
Q 018145 196 QNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------YAGVEHVGGNMFESVP----------EG 256 (360)
Q Consensus 196 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~~----------~~ 256 (360)
.+...|+.+|||-=.....+ ...++++++-+|+|++++.-++ ..+..++..|+.++.+ +.
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45567888999988877665 3457889999999988874221 2456788888765321 11
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
-++++-.++++++.+++.++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 5778888999999999999999999999999988764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.90 E-value=0.0061 Score=52.81 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=83.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecchhHHHhCCC---------------------------CCCcEEEecCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDLPHVVQDAPS---------------------------YAGVEHVGGNM 249 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~d~ 249 (360)
+...|+-+|||.=.....+...+|+++++-+|+|++++.-++ .++..++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 446899999999999989988899999999999887773210 14678899998
Q ss_pred CC-CC---------C-CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeecCCCCC
Q 018145 250 FE-SV---------P-EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIVPEIPE 302 (360)
Q Consensus 250 ~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~~~~~ 302 (360)
.+ .. . +. -++++-.+|.++++++..++|+.+.+..+ +|.+++.|++.+..+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~p~ 239 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQPN 239 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCSTT
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCCCC
Confidence 76 21 1 11 58899999999999999999999999884 5788889998654433
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.64 E-value=0.00053 Score=47.08 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=46.8
Q ss_pred hhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 53 IAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 53 L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
+...+++|..+||+.+++ ++..+.++|+.|...|+|.+......-.|.+|+.|..++.
T Consensus 16 ~~~~~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~ 73 (85)
T d3ctaa1 16 ASNRAYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 73 (85)
T ss_dssp TSSEEECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHHH
Confidence 334458999999999999 8999999999999999999864333335888888876543
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0011 Score=42.54 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=44.8
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
++.|+..|.+++..|.++||+.+|+ ...-+.+-+..|...|+.... ..+..|+++
T Consensus 7 ~~~iL~~L~~~~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~--~~g~GY~L~ 61 (63)
T d1biaa1 7 PLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT--VPGKGYSLP 61 (63)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE--ETTTEEECS
T ss_pred HHHHHHHHHHCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEE--eCCCeEEeC
Confidence 4567888887668999999999999 899999999999999984432 244468764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.48 E-value=0.0018 Score=58.60 Aligned_cols=110 Identities=19% Similarity=0.140 Sum_probs=72.2
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhCC-------------CCeEEEecc-hhHHHhCCC--------CCCc
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKYP-------------QIKAVNFDL-PHVVQDAPS--------YAGV 242 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~v 242 (360)
++.+++.+. .....+|+|-.||+|.++....+... .....++|. +.+...|+. ....
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 334444444 45678999999999999988776542 123667776 655554432 2456
Q ss_pred EEEecCCCCCCCC--CcEEEeccccccCC---------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 243 EHVGGNMFESVPE--GDAILMKWILHCWD---------------DDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 243 ~~~~~d~~~~~~~--~D~i~~~~vlh~~~---------------~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.+..+|.+...+. .|+|+++=-+..-. ...-..++.++.+.|+|||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 7888888874333 39998854432110 01123589999999999999998765
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0019 Score=56.97 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=64.4
Q ss_pred HHHhhcccCCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC------CCcEEEecCCCCCCC-----
Q 018145 187 RILEHYEGFQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY------AGVEHVGGNMFESVP----- 254 (360)
Q Consensus 187 ~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~~----- 254 (360)
.+.+.+. ..+..+|||+-||+|.++..|++.. .+++++|. ++.++.|+.. .+++|+.+|..+..+
T Consensus 203 ~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 3444444 5667899999999999999998864 46777777 7888877642 578999999877322
Q ss_pred -CC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 255 -EG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 255 -~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
.. |+|++- =|...+.+.++.+.+. +|.-.++|
T Consensus 280 ~~~~d~vilD-----PPR~G~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 280 KNGFDKVLLD-----PARAGAAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp TTCCSEEEEC-----CCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred hccCceEEeC-----CCCccHHHHHHHHHHc-CCCEEEEE
Confidence 12 888872 1122223455665554 56555544
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=96.32 E-value=0.0062 Score=45.90 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=52.0
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++.++..|...|+.|+.+||+.+++ ++..+.+.+..|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 37 q~~iL~~l~~~~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 37 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHH
Confidence 3346667766678999999999999 899999999999999999976543333 4888888886654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0016 Score=51.64 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=60.0
Q ss_pred cceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--------CCcEEEecCCCC----CCCC--CcEEEec
Q 018145 198 VERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--------AGVEHVGGNMFE----SVPE--GDAILMK 262 (360)
Q Consensus 198 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~----~~~~--~D~i~~~ 262 (360)
+.+|||+-||||.++.+.+.+.. .+++.+|. +.+++..++. ....+...|..+ .... .|+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 47999999999999999998864 37788887 5555443321 246666666543 1112 3999883
Q ss_pred cccccCChhHHHHHHHHHHH--hCCCCcEEEE
Q 018145 263 WILHCWDDDHCLRILKNCYK--AVPGNGKVIV 292 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~--~LkpgG~lli 292 (360)
=-.. ......+|..+.+ .|+|+|.+++
T Consensus 123 PPY~---~~~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 123 PPFH---FNLAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp CCSS---SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhHh---hhhHHHHHHHHHHhCCcCCCcEEEE
Confidence 2221 1234567777765 6899887766
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.24 E-value=0.0019 Score=46.32 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
..+|.--.++.|+..|...|+.|+.+||+.+|+ .+..+.+-|+.|...|+|.....+..-.|++++
T Consensus 25 ~kaLadp~Rl~Il~~L~~~~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~ 90 (108)
T d1u2wa1 25 LKAIADENRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEGKLALYSLGD 90 (108)
T ss_dssp HHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHhCCCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEECCEEEEEECH
Confidence 344555667888888866579999999999999 899999999999999999984221222465543
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=96.22 E-value=0.0029 Score=46.86 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=41.1
Q ss_pred hhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 50 fd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+-.|+..++.|.++||+.+++ ++..++++|+.|...|+|....+ .+|.| ++.
T Consensus 10 L~~la~~~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~rG-~~GGy-Lar 61 (127)
T d1xd7a_ 10 LSLISMDEKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRAG-VPGAS-LKK 61 (127)
T ss_dssp HHHHHTCSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCSS-SSSCE-ESS
T ss_pred HHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccCC-CCCcc-ccC
Confidence 334444569999999999999 99999999999999999997653 33445 553
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.11 E-value=0.0019 Score=45.42 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=47.1
Q ss_pred HHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 40 ATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 40 ~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
+|.--.++.|+..|.. |+.|+.+||+.+|+ .+..+.+-|+.|...|+|........-.|+++
T Consensus 19 aL~~p~Rl~Il~~L~~-~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~ 80 (98)
T d1r1ta_ 19 VLADPNRLRLLSLLAR-SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQ 80 (98)
T ss_dssp HHCCHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred HhCCHHHHHHHHHHHc-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 3334456667777876 69999999999999 89999999999999999987522222246554
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.96 E-value=0.0026 Score=45.78 Aligned_cols=45 Identities=16% Similarity=0.394 Sum_probs=39.4
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..++..|...|+.|+.+||+.+|+ +...+.+.|+-|...|+|.+.
T Consensus 23 ~~v~~~L~~~g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 23 VRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 345666666689999999999999 999999999999999999874
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.95 E-value=0.0034 Score=41.18 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=41.1
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|+..|...|++|..|||+.+|+ .+.-+.+.++.|...|+|.+.
T Consensus 8 ~~~Il~~l~~~g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 8 AGRVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3457888888789999999999999 899999999999999999863
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0086 Score=44.81 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=51.3
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
+.-++..|...|+.|+.+||+.+++ +...+.+.++.|+..|+|++.....+ -.+.+|+.|..++.
T Consensus 32 q~~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 32 QFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 3445555655579999999999999 89999999999999999998643222 35888988886654
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=95.76 E-value=0.0028 Score=44.17 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=47.2
Q ss_pred HHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 41 TQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 41 l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
|.--.++.|+..|.. |+.++.+|++.+|+ .+..+.+-|+.|...|+|........-.|+++
T Consensus 15 L~d~~Rl~Il~~L~~-~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~ 75 (94)
T d1r1ua_ 15 LGDYNRIRIMELLSV-SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLD 75 (94)
T ss_dssp TCSHHHHHHHHHHHH-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred hCCHHHHHHHHHHHc-CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence 333456677888877 69999999999999 89999999999999999987521111246665
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.61 E-value=0.0083 Score=38.32 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=39.8
Q ss_pred ChhhHhhhCC--CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCcee
Q 018145 48 GVFEIIAKAG--ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLY 103 (360)
Q Consensus 48 glfd~L~~~g--~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y 103 (360)
.|.+.+.++| |-++.|||+.+|+ ++..++.+|+.|+..|.+... .++.|
T Consensus 11 ~I~~~~~~~g~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI---~~d~y 61 (64)
T d1lvaa3 11 DLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI---NDEFY 61 (64)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES---SSSBE
T ss_pred HHHHHHHHcCCCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---ccccc
Confidence 3444555544 8899999999999 999999999999999999984 45544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.59 E-value=0.025 Score=43.58 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=61.2
Q ss_pred eEEEEcCCc--chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-CCCCcEEEeccccccCChhHHHH
Q 018145 200 RLVDVGGGF--GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-VPEGDAILMKWILHCWDDDHCLR 275 (360)
Q Consensus 200 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-~~~~D~i~~~~vlh~~~~~~~~~ 275 (360)
+|+=||||. |.++..|.+..++.+++++|. ++.++.+++...+....-+.... ....|+|+++ .|.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence 477799984 356667877878889999998 77777776554444333333322 2234999875 45667889
Q ss_pred HHHHHHHhCCCCcEEE
Q 018145 276 ILKNCYKAVPGNGKVI 291 (360)
Q Consensus 276 ~L~~i~~~LkpgG~ll 291 (360)
++..+...++++..+.
T Consensus 78 vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 78 IAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHSCTTCEEE
T ss_pred hhhhhhcccccccccc
Confidence 9999999999886554
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=95.43 E-value=0.0068 Score=45.23 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=53.4
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
..++.++..|...++.|..+||+.+++ ++..+.++++-|+..|+|++.....+. .+.+|+.|..+..
T Consensus 34 ~~q~~vL~~i~~~~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~ 103 (136)
T d2bv6a1 34 YPQFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 103 (136)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHH
Confidence 345566777777789999999999999 888999999999999999986543333 5688888876543
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0098 Score=38.11 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHHHHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcc-eeecccCCCceeecc
Q 018145 41 TQAAIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRV-LECSVSGGERLYALN 106 (360)
Q Consensus 41 l~~a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~-l~~~~~~~~~~y~~t 106 (360)
++.-....|++.|... +++|.++||+.+|+ ..+-++|-+..|...|+ |.. ..+.|.+.
T Consensus 4 ~k~eR~~~Il~~L~~~~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~----~~gGY~L~ 63 (65)
T d1j5ya1 4 VRQERLKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA----TPRGYVLA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE----ETTEEECC
T ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEE----eCCCEEeC
Confidence 3444456778888653 47999999999999 89999999999999997 553 34578775
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.025 Score=42.11 Aligned_cols=66 Identities=23% Similarity=0.176 Sum_probs=52.6
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++.++..|...|+.|..+||+.+++ ++..+.+++..|+..|+|++.....++ .+.+|+.|..+..
T Consensus 35 ~q~~vL~~l~~~~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 103 (138)
T d1jgsa_ 35 AQFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhHHhCcCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHH
Confidence 34555666666679999999999999 999999999999999999986543333 6888888886653
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.37 E-value=0.007 Score=48.25 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=47.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC-----Cceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG-----ERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~-----~~~y~~t~~s~ 110 (360)
.++.|++.|.+ ||.|+.+||+.+|+ ++..+.+-|+.|...|+|....... ...|.++..+.
T Consensus 16 ~R~~Il~~L~~-~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 16 TRRRILFLLTK-RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 35556677766 69999999999999 8999999999999999998542211 12688887654
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0058 Score=38.83 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=39.1
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|+..|.+ ||+|..|||+.+|+ ...-+.++++.|...|+|.+.
T Consensus 3 ~Il~~i~~-~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK-SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 47788887 69999999999999 889999999999999999974
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=95.24 E-value=0.0079 Score=45.09 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=54.3
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
.-++-++..|...|+.|+.+||+.+++ ++..+.+.++.|+..|+|.+.....+ -...+|+.|..++.
T Consensus 32 ~~q~~iL~~l~~~~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d2etha1 32 TTELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 101 (140)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHH
Confidence 345567777877789999999999999 99999999999999999998754333 26888888876543
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.011 Score=38.59 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=41.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
+..|+..|...|++|..+||+.+|+ ...-+.++++.|...|+|.+.
T Consensus 7 ~~~Il~~i~~~g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 7 AGAVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3457888888899999999999999 899999999999999999863
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.12 E-value=0.031 Score=41.68 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=51.5
Q ss_pred HHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 44 AIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 44 a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
..++-++..|...++.|..+||+.+++ ++..+.++++.|+..|+|++.....+. .+.+|+.|..+.
T Consensus 36 ~~q~~vL~~l~~~~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~ 104 (141)
T d1lnwa_ 36 PPDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 104 (141)
T ss_dssp HHHHHHHHHHHSSTTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence 345556677766668999999999999 999999999999999999986542222 467787776544
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.012 Score=50.92 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=39.7
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhC---CCCCCcEEEecCCCC
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDA---PSYAGVEHVGGNMFE 251 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~~~v~~~~~d~~~ 251 (360)
...+|||||+|.|.++..+++...--++++++. +...+.. ...++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 457899999999999999998753235666655 4433332 234689999999874
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.95 E-value=0.037 Score=40.81 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=50.2
Q ss_pred HhhChhhHhhhC--CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 45 IQLGVFEIIAKA--GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 45 ~~lglfd~L~~~--g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
.++-++..|... ++.|..+||+.+++ +...+.++++.|+..|+|.+.....+. .+.+|+.|..+..
T Consensus 30 ~q~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~ 100 (135)
T d3broa1 30 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 100 (135)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHH
Confidence 344455556643 36999999999999 899999999999999999876432222 5888888875543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.90 E-value=0.018 Score=45.84 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=67.1
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC---------CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES---------VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~---------~~~~-D~i~~~ 262 (360)
.+++.+||.+|||. |..+..+++.....++++.|. +.-++.+++.. .+.+.-....+ -+.+ |+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-a~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-ccEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 67789999999998 667788888887778888887 77777776543 22222111111 1224 888753
Q ss_pred ccc------cc-CChhHHHHHHHHHHHhCCCCcEEEEEeeecC
Q 018145 263 WIL------HC-WDDDHCLRILKNCYKAVPGNGKVIVMNSIVP 298 (360)
Q Consensus 263 ~vl------h~-~~~~~~~~~L~~i~~~LkpgG~lli~e~~~~ 298 (360)
--. |+ .........|+.+.+.++|||++.++-...+
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~ 144 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVT 144 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCS
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCC
Confidence 221 10 0111234689999999999999999875443
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.88 E-value=0.015 Score=43.52 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
+.|.++||+.+++ ++..++++|..|...|+|.... +.|.|.+..
T Consensus 23 ~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r--G~GG~~L~~ 66 (138)
T d1ylfa1 23 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--GPGGAGLLK 66 (138)
T ss_dssp GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec--CCCCceecC
Confidence 8999999999999 9999999999999999999864 346676653
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.46 E-value=0.015 Score=46.03 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC-C----Cceeecchhc
Q 018145 38 PMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG-G----ERLYALNPVS 109 (360)
Q Consensus 38 ~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~-~----~~~y~~t~~s 109 (360)
..++.--.+..|++.|.. ||.|+.+||+.+|+ ++..+.+.|+.|...|+|...... . ...|.+|+.+
T Consensus 13 ~~~l~~p~R~~Il~~L~~-~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~ 84 (190)
T d1ulya_ 13 IKVMLEDTRRKILKLLRN-KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV 84 (190)
T ss_dssp HHHHHSHHHHHHHHHHTT-CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred HHHhCCHHHHHHHHHHHh-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence 445555667888999976 79999999999999 899999999999999999753211 1 1347777654
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=94.44 E-value=0.021 Score=36.20 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=41.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|.+.|...+..|..+||+.+|+ .+.-+.+=++-|...|++..
T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 45678889998889999999999999 88999999999999999985
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=94.42 E-value=0.016 Score=43.65 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=49.6
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
-+...|...++.|..+||+.+++ ++..+.+.++.|+..|+|.+.....+. ...+|+.|..+..
T Consensus 33 ~iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~ 98 (144)
T d1lj9a_ 33 LYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHH
Confidence 34445556568999999999999 999999999999999999987543333 5778888875543
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.028 Score=34.22 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=41.4
Q ss_pred hChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceee
Q 018145 47 LGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYA 104 (360)
Q Consensus 47 lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~ 104 (360)
+++|..|..+...|+.+||.++++ +..-+.+.|..|...|-+.+.. ..+-.|+
T Consensus 5 l~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~~-gtPPlWr 57 (59)
T d2gxba1 5 LKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-GTPPLWK 57 (59)
T ss_dssp HHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-SSSCEEE
T ss_pred HHHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhcC-CCCCCcc
Confidence 345666665458999999999999 8999999999999999999743 2333444
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.36 E-value=0.013 Score=36.78 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=40.8
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
+..|...|.+.+..|..+||+++|+ ++..+.+=++.|...|++.+
T Consensus 5 D~kIl~~L~~n~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 5 DKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 5567888888889999999999999 89999999999999999985
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.35 E-value=0.014 Score=39.86 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=47.6
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhcC
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVSN 115 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~~ 115 (360)
|++.+.. +.+...|...+++ +...+...|+.|+..|++.. .++.|.+|+.|..|+..
T Consensus 11 IL~~~~~--g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~----~~~~Y~iT~kG~~~L~~ 67 (90)
T d1r7ja_ 11 ILEACKS--GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQ----EGKQYMLTKKGEELLED 67 (90)
T ss_dssp HHHHHTT--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----ETTEEEECHHHHHHHHH
T ss_pred HHHHHhC--CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeee----cCCEEEECccHHHHHHH
Confidence 3444433 4578999999999 99999999999999999984 67899999999988763
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.34 E-value=0.012 Score=42.08 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=37.0
Q ss_pred ChhhHh-hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEII-AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L-~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|+..| ...||+|+.+||+.+|+ ++..+.+.|+.|...|+|.+.
T Consensus 25 ~iL~~L~~~~~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 25 AVLLKMVEIEKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence 344444 23468999999999999 999999999999999999975
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.33 E-value=0.023 Score=35.60 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=41.8
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|...|.+.+..|..+||+++|+ ++..+.+=++.|...|++..
T Consensus 4 ~D~~Il~~L~~n~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 46678889999889999999999999 89999999999999999985
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.30 E-value=0.027 Score=42.29 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHhhChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccC---CCceeecchhchhhhc
Q 018145 44 AIQLGVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSG---GERLYALNPVSKYFVS 114 (360)
Q Consensus 44 a~~lglfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~---~~~~y~~t~~s~~~~~ 114 (360)
..++.++..|... |++|+.+||+.+++ ++..+.++++-|+..|+|.+.... ..-.+.+|+.|..+..
T Consensus 34 ~~q~~vL~~L~~~~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~ 104 (145)
T d2hr3a1 34 FSQLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 104 (145)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence 3456666667543 58999999999999 999999999999999999976431 1225888888886643
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.25 E-value=0.011 Score=44.05 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=51.4
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++-++..|...|+.|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..+..
T Consensus 32 q~~vL~~l~~~~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 99 (136)
T d2fbia1 32 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 99 (136)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHH
Confidence 4445666666679999999999999 999999999999999999976542322 4778888876554
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.24 E-value=0.013 Score=44.03 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=62.0
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
...+++...++++..-|...+|..+. . |+.+..+|.+.+|+ .+..+..=|+.|...|+|.+.....
T Consensus 5 ~~~Cpv~~~l~ilg~kW~l~Il~~l~---------~-G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~ 70 (142)
T d2f2ea1 5 QASCPVARPLDVIGDGWSMLIVRDAF---------E-GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAES 70 (142)
T ss_dssp TCSCTTTTTHHHHCSSSHHHHHHHHH---------T-TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHH---------c-CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCC
Confidence 34456667788888888888877642 3 69999999999999 8888999999999999998732222
Q ss_pred C--ceeecchhchhhh
Q 018145 100 E--RLYALNPVSKYFV 113 (360)
Q Consensus 100 ~--~~y~~t~~s~~~~ 113 (360)
+ -.|.+|+.|..|.
T Consensus 71 p~r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 71 GSHQEYRLTDKGRALF 86 (142)
T ss_dssp SSCEEEEECHHHHTTH
T ss_pred CCeeEEecCcCcchHH
Confidence 2 3599999998664
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.018 Score=36.56 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.7
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.+..|...|...+..|..+||+++|+ ++..+.+=++.|.+.|++..
T Consensus 6 ~D~~IL~~L~~~~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 35668888999889999999999999 89999999999999999985
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.19 E-value=0.047 Score=46.72 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=66.6
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCC-CCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC-CC-CC-CcEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYP-QIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE-SV-PE-GDAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-~~-~D~i~~-- 261 (360)
..++.+|||+-+|.|.=+..++.... ...++..|. +.-+...++ ..++.+...|... +. .. .|.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 56678999999999998888888765 457788887 443333222 1456666667655 22 22 277765
Q ss_pred ----ccccc-------cCChhHH-------HHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ----KWILH-------CWDDDHC-------LRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ----~~vlh-------~~~~~~~-------~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..++. .+..++. .++|.++.+.|||||+|+-.+-..
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 22221 2222222 367889999999999988776544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.11 Score=40.25 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-----------CCCCC-cEEE
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-----------SVPEG-DAIL 260 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-----------~~~~~-D~i~ 260 (360)
.+++.+||-+|+| .|.++..+++.....+++++|. ++-.+.+++..--.++...-.+ ..+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5677899999988 4788888998875457888886 6666666554221222211110 01234 8887
Q ss_pred eccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 261 MKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 261 ~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
-.- .. ...++...+.|+|||+++++-...
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred ecC-----Cc---hhHHHHHHHHhcCCCEEEEEeecC
Confidence 432 11 235788899999999999887543
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=94.15 E-value=0.0094 Score=44.49 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=51.8
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhcC
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVSN 115 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~~ 115 (360)
++.++..|...++.|..+||+.+++ ++..+.+.++-|+..|+|.+.....+. ...+|+.|..+...
T Consensus 35 q~~vL~~l~~~~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 103 (137)
T d1z91a1 35 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 103 (137)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHH
Confidence 3444556655579999999999999 999999999999999999987543333 37888888766543
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.01 E-value=0.087 Score=38.80 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=47.3
Q ss_pred hhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 49 VFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 49 lfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++-.|...+ +.|..+||+.+++ ++..+.++++.|+..|+|++.....++ ...+|+.|..+..
T Consensus 33 iL~~l~~~~~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~ 98 (137)
T d2fbha1 33 VLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 98 (137)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHH
Confidence 344454333 6899999999999 999999999999999999986432222 5778888876553
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.92 E-value=0.16 Score=39.16 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=63.7
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-C--------CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S--------VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~--------~~~~-D~i~~~ 262 (360)
.+++.+||=+|||. |.++..+++.....++++.|. ++-.+.+++..--.++...-.+ . .+.+ |+++-+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66788999999997 888889999987778888887 6666666654333333211111 1 1234 888754
Q ss_pred cccccCChhHHHHHHHHHHHhCCCC-cEEEEEee
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGN-GKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~Lkpg-G~lli~e~ 295 (360)
-- ....+....+.++|| |+++++-.
T Consensus 106 ~G--------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG--------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SC--------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cc--------cchHHHHHHHHhhcCCeEEEecCC
Confidence 31 135688999999996 99998764
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.032 Score=36.07 Aligned_cols=61 Identities=10% Similarity=0.088 Sum_probs=50.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHhCcCCCCCc-CcHHHHHHHHhcCcceeecccCCCceeecchhch
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQLQAQNVKAP-MMLDRMLRLLVSHRVLECSVSGGERLYALNPVSK 110 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~~~~~~~~~-~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~ 110 (360)
.+..|++.|...|+.|+-.||+.+|+ +. .-+.+.|..|...|.|.... ..+..|.++....
T Consensus 6 ~eekI~~~L~~~g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~-~tPP~W~L~~~~~ 67 (73)
T d1xmka1 6 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKR 67 (73)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCC-CCCCceeeecchh
Confidence 46678999999899999999999999 66 35999999999999999753 3556788886554
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.90 E-value=0.031 Score=38.67 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ce
Q 018145 27 HAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RL 102 (360)
Q Consensus 27 ~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~ 102 (360)
..++++.+-|...++.. |.. |+....||.+.+ |+ .+..+.+=|+.|+..|+|.+...... -.
T Consensus 3 ~~l~ilg~kW~l~Il~~---------L~~-g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~ve 68 (95)
T d2hzta1 3 ATLEVIGGKWKCVILCH---------LTH-GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVE 68 (95)
T ss_dssp HHHHHHCSTTHHHHHHH---------HTT-CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred HHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchh
Confidence 34555666666655543 334 689999999997 89 88899999999999999997642111 14
Q ss_pred eecchhchhhh
Q 018145 103 YALNPVSKYFV 113 (360)
Q Consensus 103 y~~t~~s~~~~ 113 (360)
|++|+.|..+.
T Consensus 69 Y~LT~~G~~L~ 79 (95)
T d2hzta1 69 YELSEYGRSLE 79 (95)
T ss_dssp EEECTTGGGGH
T ss_pred hhhhhhHHHHH
Confidence 99999998665
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.019 Score=53.10 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=65.9
Q ss_pred HHHHHhhcccCCCcceEEEEcCCcchHHHHHHhhC----CC--------------CeEEEecc-hhHHHhCCCC------
Q 018145 185 MERILEHYEGFQNVERLVDVGGGFGVTLSMITSKY----PQ--------------IKAVNFDL-PHVVQDAPSY------ 239 (360)
Q Consensus 185 ~~~i~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~~------ 239 (360)
+..+++.+. .....+|+|-.||+|.++....+.. .. ....++|+ +.+...|+-.
T Consensus 153 v~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 153 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 334444444 4556799999999999998765532 11 14677776 6655544310
Q ss_pred -----CCcEEEecCCCC-C---CCCCcEEEecccccc--C----------ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 240 -----AGVEHVGGNMFE-S---VPEGDAILMKWILHC--W----------DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 240 -----~~v~~~~~d~~~-~---~~~~D~i~~~~vlh~--~----------~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
..-.+..++.+. + .+..|+|+.+=-+-. . ....-..++.++.+.|+|||++.++-+
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 123455566554 2 122388887432210 0 001123589999999999999999765
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=93.80 E-value=0.022 Score=42.44 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=48.1
Q ss_pred hhChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 46 QLGVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
++-++..|.. +++.|..+||+.+++ ++..+.+.++.|+..|+|++.....+. .+.+|+.|..+..
T Consensus 33 ~~~~L~~l~~~~~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 33 HWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 3345555654 346999999999999 899999999999999999975432222 5889998886654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.081 Score=44.45 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCC----CC--CCcEEEecCCCC-C--CCC-CcEEEe--
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAP----SY--AGVEHVGGNMFE-S--VPE-GDAILM-- 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~d~~~-~--~~~-~D~i~~-- 261 (360)
..++.+|||+-+|.|.=+..++....+.+++..|. +.-+...+ +. ..+.....|... . .+. .|.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56778999999999999999999888888888886 33222221 11 234444444432 1 222 288865
Q ss_pred ----ccccc-------cCChhH-------HHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 ----KWILH-------CWDDDH-------CLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ----~~vlh-------~~~~~~-------~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..++. .+...+ -.++|+++.+.|||||+|+-..-..
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 33332 223222 2367889999999999998776544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.53 E-value=0.13 Score=39.05 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=54.8
Q ss_pred eEEEEcCC--cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCCCCCCcEEEeccccccCChhHHHHH
Q 018145 200 RLVDVGGG--FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFESVPEGDAILMKWILHCWDDDHCLRI 276 (360)
Q Consensus 200 ~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 276 (360)
+|.=||+| .+.++..+.+. +.+++++|. ++..+.+++...+.... +..+.....|+|+++ .|+.....+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceee-eeccccccccccccc-----CcHhhhhhh
Confidence 57778887 33455555554 567888887 66666665443332222 222234455999874 467788899
Q ss_pred HHHHHHhCCCCcEEEE
Q 018145 277 LKNCYKAVPGNGKVIV 292 (360)
Q Consensus 277 L~~i~~~LkpgG~lli 292 (360)
++++...++|+..++-
T Consensus 74 l~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHGGGSCTTCEEEE
T ss_pred hhhhhhhcccccceee
Confidence 9999999998876543
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=93.47 E-value=0.035 Score=39.80 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccC
Q 018145 20 EEEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSG 98 (360)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~ 98 (360)
.+.++....++++.+-|...++.. |.. |+....||.+.+ |+ .+..+.+-|+.|+..|+|.+....
T Consensus 9 ~~~Cpv~~~l~~ig~kW~l~Il~~---------L~~-g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~ 74 (114)
T d1yyva1 9 AEQCPSREVLKHVTSRWGVLILVA---------LRD-GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYP 74 (114)
T ss_dssp STTCTHHHHHHHHHSHHHHHHHHH---------GGG-CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHH---------Hhc-CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccC
Confidence 345788899999999998887754 233 588999999998 78 888899999999999999986421
Q ss_pred C---Cceeecchhchhhhc
Q 018145 99 G---ERLYALNPVSKYFVS 114 (360)
Q Consensus 99 ~---~~~y~~t~~s~~~~~ 114 (360)
. .-.|.+|+.|..+..
T Consensus 75 ~~p~~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 75 VVPPHVEYSLTPLGEQVSD 93 (114)
T ss_dssp SSSCEEEEEECHHHHHHHH
T ss_pred CCCchhHhHhhHhHHHHHH
Confidence 1 124999999987753
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=93.43 E-value=0.031 Score=39.23 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
+.++....++++.+-|...++... .. |+....||.+.+ |+ .+..+.+=|+.|+..|+|.+....+
T Consensus 6 ~~Cpv~~~l~ilg~kW~l~Il~~L---------~~-g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~ 71 (102)
T d2fswa1 6 EECPVRKSMQIFAGKWTLLIIFQI---------NR-RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPE 71 (102)
T ss_dssp TTCHHHHHHHHHTSSSHHHHHHHH---------TT-SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHH---------cc-CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCC
Confidence 357889999999999998876642 23 589999999997 89 8889999999999999999853211
Q ss_pred -C--ceeecchhchhhh
Q 018145 100 -E--RLYALNPVSKYFV 113 (360)
Q Consensus 100 -~--~~y~~t~~s~~~~ 113 (360)
+ -.|++|+.|..+.
T Consensus 72 ~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 72 VPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeehhhhhHhHHHHH
Confidence 1 2499999998664
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.26 E-value=0.066 Score=37.87 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhChhhHhhhCCCCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCC
Q 018145 21 EEESYSHAMQLAMGVVLPMATQAAIQLGVFEIIAKAGELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGG 99 (360)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglfd~L~~~g~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~ 99 (360)
..++....++++.+-|...++.. |.. |+....||.+.+ |+ .+..+.+=|+.|+..|+|.+.....
T Consensus 5 ~~c~i~~al~iig~kW~~~Il~~---------L~~-g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~~ 70 (108)
T d1z7ua1 5 KQTSINLALSTINGKWKLSLMDE---------LFQ-GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNE 70 (108)
T ss_dssp HHHHHHHHHHTTCSTTHHHHHHH---------HHH-SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred cCCcHHHHHHHHcCCCHHHHHHH---------HHc-CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccCC
Confidence 35788888888899888877664 334 588999999997 79 8889999999999999999853211
Q ss_pred C---ceeecchhchhhhc
Q 018145 100 E---RLYALNPVSKYFVS 114 (360)
Q Consensus 100 ~---~~y~~t~~s~~~~~ 114 (360)
. -.|.+|+.|..+..
T Consensus 71 ~p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 71 LPPRVEYTLTPEGYALYD 88 (108)
T ss_dssp SSCEEEEEECHHHHHHHH
T ss_pred CcceehhhhchhHHHHHH
Confidence 1 13999999987654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.24 E-value=0.031 Score=49.13 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=67.1
Q ss_pred CcceEEEEcCCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCC---------------------CCcEEEecCCCC---
Q 018145 197 NVERLVDVGGGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY---------------------AGVEHVGGNMFE--- 251 (360)
Q Consensus 197 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~d~~~--- 251 (360)
++.+|||..||+|..+...+...+..+++..|+ +..++.++++ ..+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 457999999999999999888887778889998 8887776542 124455555533
Q ss_pred CCCCC-cEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 252 SVPEG-DAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 252 ~~~~~-D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+. |+|.+-- +.. ...+|..+.++++.||.|.+.-.
T Consensus 125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCC--cHHHHHHHHHHhccCCEEEEEec
Confidence 12333 9887743 222 24689999999999999998653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.34 Score=36.87 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=62.0
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC----------CCCC-cEEEe
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES----------VPEG-DAILM 261 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~----------~~~~-D~i~~ 261 (360)
.+++.+||=+|+|. |.++..+++.....++++.|. +.-++.+++..--.++..+-.++ .+.+ |+|+-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56778999999975 455666777765557888887 77777776542222222221111 1223 88876
Q ss_pred ccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 262 KWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 262 ~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
.-- . ...++.+.+.++|||++++.-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcCCCEEEEEecCC
Confidence 432 1 346889999999999999987543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.96 E-value=0.23 Score=37.71 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=60.9
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCC-CcEEEecCCCCC-----------CCCC-cEE
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYA-GVEHVGGNMFES-----------VPEG-DAI 259 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~v~~~~~d~~~~-----------~~~~-D~i 259 (360)
.+++.+||-+||| .|.++..+++.. +.+++++|. +.-.+.+++.. ...+..-+...+ .+.+ |+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5677899999988 567777788776 468999987 66666666542 222222111111 1233 888
Q ss_pred EeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 260 LMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 260 ~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
+-.-- . ...+..+.+.++|+|++++.-..
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhcCCceEEEecC
Confidence 75421 1 24688888999999999987643
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.88 E-value=0.094 Score=32.99 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=33.5
Q ss_pred hhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 54 AKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 54 ~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.++++.+..+||+.+|+ .+.-+-+.++-|...|+|..
T Consensus 19 ~~~~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~ 55 (63)
T d2isya1 19 EEGVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRV 55 (63)
T ss_dssp HTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 44468999999999999 88899999999999999997
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=92.80 E-value=0.049 Score=34.12 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=35.3
Q ss_pred hhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 50 FEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 50 fd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|....+.|+.+..+||+.+|+ .+.-+...++-|...|+|+.
T Consensus 13 ~~l~~~~~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~ 53 (61)
T d2ev0a1 13 YMLIEEKGYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIY 53 (61)
T ss_dssp HHHHHHHSSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHhcCCCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 333444469999999999999 88899999999999999996
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=92.57 E-value=0.025 Score=40.67 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=46.3
Q ss_pred hhhHhh--hCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 49 VFEIIA--KAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 49 lfd~L~--~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
++..|. +.++.|..+||+.+++ ++..+.++++.|+..|+|.+.....+. ...+|+.|..++
T Consensus 37 vL~~l~~~~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 37 ILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 102 (115)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHccCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence 444444 2358999999999999 899999999999999999986543333 466777776544
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.063 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|-|..||++.+|++ .+..+.+.|..|+..|+|.+.
T Consensus 24 ~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~ 58 (71)
T d1jhfa1 24 PPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV 58 (71)
T ss_dssp CCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence 88999999999993 466799999999999999973
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=92.17 E-value=0.044 Score=39.95 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=48.4
Q ss_pred hhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
++-++..|.. .+++|+.+||+.+++ .+..+.+.++.|...|+|.+.....+. ...+|+.|+..+
T Consensus 36 q~~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 104 (125)
T d1p4xa1 36 EFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (125)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence 4445555543 247899999999999 899999999999999999987543222 477777776554
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=92.04 E-value=0.037 Score=42.44 Aligned_cols=65 Identities=14% Similarity=-0.049 Sum_probs=50.6
Q ss_pred hhChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCC---ceeecchhchhhhc
Q 018145 46 QLGVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGE---RLYALNPVSKYFVS 114 (360)
Q Consensus 46 ~lglfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~---~~y~~t~~s~~~~~ 114 (360)
+..++..|...++.|..+||+.+++ +...+.++++.|...|+|++.....+ -...+|+.|..++.
T Consensus 43 q~~vL~~l~~~~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~ 110 (162)
T d2fxaa1 43 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 110 (162)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHhhhccCCCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence 3445666766678999999999999 89999999999999999998643222 25888888876653
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.90 E-value=0.042 Score=40.07 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=48.2
Q ss_pred hhChhhHhhh--CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 46 QLGVFEIIAK--AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 46 ~lglfd~L~~--~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
++-++..|.. .++.|..+||+.+++ +...+.+.++-|+..|+|.+.....+. ...+|+.|+.++
T Consensus 35 q~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~ 103 (125)
T d1p4xa2 35 EFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 103 (125)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHH
Confidence 3445556633 247899999999999 899999999999999999986543333 477777776554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.74 E-value=0.13 Score=39.55 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=62.5
Q ss_pred HhhcccCCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCC-cE
Q 018145 189 LEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEG-DA 258 (360)
Q Consensus 189 ~~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~-D~ 258 (360)
.+... .+++.+||=+|||. |..+..+++.....++++.|. +.-++.+++..-..++..+-.+. .+.+ |+
T Consensus 21 ~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 21 INALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp HTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 34334 66788999999874 456677777777777777776 66666665543334443322211 1223 88
Q ss_pred EEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 259 ILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 259 i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
|+-+-- . ...++.+.+.++|+|+++++-.
T Consensus 100 vid~~G-----~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTG-----S---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECSC-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCC-----c---HHHHHHHHhcccCceEEEEEee
Confidence 775421 1 3467888999999999998754
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.51 E-value=0.066 Score=40.16 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=37.3
Q ss_pred ChhhHhhhC-CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 48 GVFEIIAKA-GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 48 glfd~L~~~-g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.|+..|..+ +|+|+.+||+.+|+ +...+.+.++.|...|+|.+..
T Consensus 30 ~i~~~L~~~~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 30 AVYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEEE
Confidence 344455432 48999999999999 9999999999999999998653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.35 E-value=0.15 Score=39.28 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=61.3
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC------C--CCCC-cEEEecc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE------S--VPEG-DAILMKW 263 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~------~--~~~~-D~i~~~~ 263 (360)
.+++.+||=+|||. |..+..+++.....++++.|. +.-.+.+++..-..++.-.-.+ . .+.+ |+|+-+-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 67788899999986 788888888775567888887 5556666543222222211111 0 1234 8887543
Q ss_pred ccccCChhHHHHHHHHHHHhCCCCcEEEEEeee
Q 018145 264 ILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSI 296 (360)
Q Consensus 264 vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~ 296 (360)
-- ...++...+.++|+|+++++-..
T Consensus 105 g~--------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEeec
Confidence 21 13577888999999999997643
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=91.28 E-value=0.039 Score=39.61 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~ 113 (360)
+++|..+||+.+++ ++..+.+.++.|+..|+|++.....+. .+.+|+.|+.++
T Consensus 48 ~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 103 (115)
T d2frha1 48 KEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 103 (115)
T ss_dssp SEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence 46899999999999 899999999999999999987542222 477888887654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.90 E-value=0.56 Score=35.57 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=60.1
Q ss_pred CCCcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC-C------CCCC-cEEEeccc
Q 018145 195 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE-S------VPEG-DAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~------~~~~-D~i~~~~v 264 (360)
.+++.+||-+|+|.. ..+..+++.....++++.|. ++-.+.+++.....++..+-.. . .+.+ |+|+-...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 456788999998754 55567777777778888887 5556666554333444332111 0 1233 87775432
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. ...++...+.++|||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred -----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 1 2458888999999999998763
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.39 E-value=0.21 Score=38.06 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=59.3
Q ss_pred CCCcceEEEEcC-C-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC--------CCCC-cEEEec
Q 018145 195 FQNVERLVDVGG-G-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--------VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--------~~~~-D~i~~~ 262 (360)
.+++.+||=+|| | .|.++..+++.....++++.+. +.-.+.+++..--.++..+-.+. .+.+ |+++-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 667789999996 3 5666777888777678888886 55555554322112333222211 1233 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. . ...++.+.+.++|||+++++-.
T Consensus 105 ~g-----~---~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 105 NN-----S---EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp CC-----C---HHHHTTGGGGEEEEEEEEECCS
T ss_pred cc-----c---chHHHhhhhhcccCCEEEEecc
Confidence 32 1 2457788899999999998854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.09 E-value=0.068 Score=40.97 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=57.9
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEe-cCCCC---CCCCC-cEEEec-cccc
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG-GNMFE---SVPEG-DAILMK-WILH 266 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~d~~~---~~~~~-D~i~~~-~vlh 266 (360)
.+++.+||-+|+| .|.++..+++.. +++++++|. ++-++.+++..--.++. .+..+ ..... |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6778899999998 667777787765 678888886 66666665432112222 11111 12334 877653 2222
Q ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 267 CWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 267 ~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
.. .+....+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 11 14466789999999999763
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.61 E-value=0.085 Score=40.68 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred hChhhHhhhCC---CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCc---eeecchhchhhhc
Q 018145 47 LGVFEIIAKAG---ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGER---LYALNPVSKYFVS 114 (360)
Q Consensus 47 lglfd~L~~~g---~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~---~y~~t~~s~~~~~ 114 (360)
+.|+..|...| ++|..+||+.+++ ++..+.++++-|+..|+|++.....+. ...+|+.|..++.
T Consensus 65 ~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~ 134 (172)
T d2fbka1 65 WDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 134 (172)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence 34445554433 4899999999999 889999999999999999986432222 4678888876554
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.2 Score=31.92 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCHHHHHHHh-CcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecch
Q 018145 58 ELSAPEIAAQL-QAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNP 107 (360)
Q Consensus 58 ~~t~~~la~~~-~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~ 107 (360)
++++.+|++++ |+ +..-++..++.|...|.|... -+++.|..|.
T Consensus 23 Gi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT--iDddHfkstd 67 (69)
T d1dpua_ 23 GLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST--VDDDHFKSTD 67 (69)
T ss_dssp TEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC--SSTTEEEESS
T ss_pred CcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc--cccchhcccC
Confidence 79999999998 79 888999999999999999975 4777887663
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=89.25 E-value=0.13 Score=32.67 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=37.4
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
..+.|..+...|+.+||+++|+ +..-+.+.|..|...|.|...
T Consensus 15 ~l~~L~~~~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~ 57 (70)
T d1sfua_ 15 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 57 (70)
T ss_dssp HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence 3456666568999999999999 888999999999999999975
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=88.74 E-value=0.3 Score=31.24 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeeccc-CCCceeecchhchhhh
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVS-GGERLYALNPVSKYFV 113 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~-~~~~~y~~t~~s~~~~ 113 (360)
++-|+..|+++.++ +-..++|.|-.|.+.|+++-... ++.+.=++|+.+..++
T Consensus 23 ~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 23 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 76 (81)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence 38999999999999 88899999999999999986543 3444677888877654
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.51 E-value=0.12 Score=34.61 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=37.6
Q ss_pred ChhhHhhh-CCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 48 GVFEIIAK-AGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 48 glfd~L~~-~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.|++.|.+ .+.+|=++||+++|+ ...-+++.|..|...|++...
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 47777653 347999999999999 889999999999999999764
|
| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.39 E-value=0.26 Score=31.26 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecchhchhhhc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALNPVSKYFVS 114 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t~~s~~~~~ 114 (360)
|+.-..||+.+|+ .++.++-.++.|...|+|+. ....-.+|+.|..++.
T Consensus 17 PiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~----~~~Gm~lTe~G~~~l~ 65 (69)
T d2p8ta1 17 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRS----KQRGHFLTLKGKEIRD 65 (69)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE----C--CEEECHHHHHHHH
T ss_pred CccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeee----eCCCCEECHhHHHHHH
Confidence 9999999999999 99999999999999999997 3455668888877653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.28 E-value=0.52 Score=35.49 Aligned_cols=91 Identities=9% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEecccc
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWIL 265 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~vl 265 (360)
.+++.+||=+|+|. |..+..+++.. +.+++.+|. +.-.+.+++..--.++..+-.+. ....|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 56778899899874 56667777776 478999987 66666666543233333221111 011233333221
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 266 HCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 266 h~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. ...+....+.|+|||+++++-
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 103 ---S----NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp ---C----HHHHHHHHTTEEEEEEEEECC
T ss_pred ---c----chHHHHHHHHhcCCcEEEEEE
Confidence 1 235788899999999999875
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.06 E-value=1.2 Score=31.85 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=52.4
Q ss_pred eEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEeccccccCC
Q 018145 200 RLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWILHCWD 269 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 269 (360)
+|+=+|+ |.++..+++.+ .+..++++|. |+.++.+++..++.++.||..++ ...+|.++.. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 5666665 66666666654 3467888887 77777654434688999999872 1233877763 12
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKV 290 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~l 290 (360)
+++.-.+...+.+.+.+.-.+
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHHHHHcCCceEE
Confidence 334444555666778877443
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.74 E-value=0.2 Score=29.54 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=43.3
Q ss_pred hhChhhHhhhCC-CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeec
Q 018145 46 QLGVFEIIAKAG-ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYAL 105 (360)
Q Consensus 46 ~lglfd~L~~~g-~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~ 105 (360)
|-.|++.|.+.| |.-..+|++++.+ +..-+.++|..|-..+=+.. .+++.|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl---~~patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSS---PEPATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEE---EETTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC----CHHHHHHHHHHHHhcccccc---CCCccccC
Confidence 455777777755 9999999999999 88899999999998888887 35666664
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.50 E-value=0.32 Score=42.21 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-------CCCeEEEecc
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-------PQIKAVNFDL 229 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~ 229 (360)
.++..+|+|+|+|+|.++..+++.+ ..++++.++.
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 3456799999999999999887754 2345777776
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.78 E-value=0.72 Score=34.77 Aligned_cols=92 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCcceEEEEcCC-cchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCC---CCCCC-cEEEeccccccC
Q 018145 195 FQNVERLVDVGGG-FGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFE---SVPEG-DAILMKWILHCW 268 (360)
Q Consensus 195 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~-D~i~~~~vlh~~ 268 (360)
.+++.+||=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++..--.++...-.. ....+ |+++-.---
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~--- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA--- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS---
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec---
Confidence 6778899999987 467888888887 556666765 4444555443222222221111 11233 887754321
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 269 DDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 269 ~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
...+....+.++|+|+++++-.
T Consensus 104 -----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 -----PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -----CCCHHHHHTTEEEEEEEEECCC
T ss_pred -----chhHHHHHHHHhcCCEEEEecc
Confidence 1236677889999999999754
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.33 E-value=1.7 Score=36.04 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred CCCcceEEEEcCCcchHHHHHHhhC-CCCeEEEecc-hhHHHhCCC------CCCcEEEecCCCC
Q 018145 195 FQNVERLVDVGGGFGVTLSMITSKY-PQIKAVNFDL-PHVVQDAPS------YAGVEHVGGNMFE 251 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 251 (360)
..++.+|||+.+|.|.-+..++... +..+++.+|. +.-++..++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4667899999999999888888764 4567888887 444443322 1568888888765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=0.9 Score=34.39 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCCcceEEEEcC--CcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec---CCCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGG--GFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG---NMFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~~~~-----~~~~-D~i~~~ 262 (360)
.+++.+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++.. |+.+. -+.+ |+|+.+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 667889999985 5778888888887 467766654 555566554422223221 11111 1233 888764
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
. . ...+....+.|+|+|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEEEEEEEECC
T ss_pred c-----c----HHHHHHHHhccCCCCEEEEEe
Confidence 2 1 235888899999999999874
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=85.92 E-value=0.3 Score=31.52 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=35.5
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
++|-++||+.+|+ ..+-+.|.|..|...|++.. ..+.+...
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~----~~~~i~I~ 67 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIEL----HRKEILIP 67 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEE----ETTEEEES
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe----cCCEEEEc
Confidence 7899999999999 89999999999999999985 44555544
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.52 E-value=0.53 Score=31.47 Aligned_cols=38 Identities=5% Similarity=-0.031 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 57 GELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 57 g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
-|.+..+|++.+|++- .+.-++..|..|...|+|....
T Consensus 22 ~Pv~s~~i~~~~~l~~--S~aTIRn~m~~LE~~G~l~~~h 59 (87)
T d1stza1 22 KPVSSQRVLEVSNIEF--SSATIRNDMKKLEYLGYIYQPH 59 (87)
T ss_dssp SCBCHHHHHHHSCCCS--CHHHHHHHHHHHHHTTSEECCS
T ss_pred CccCHHHHHHHhCCCC--CHHHHHHHHHHHHHCCcccCCC
Confidence 3999999999988710 4677999999999999999753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=85.21 E-value=3.1 Score=31.32 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=60.3
Q ss_pred CCCcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEe---cCCCC-C-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG---GNMFE-S-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d~~~-~-----~~~~-D~i~~~ 262 (360)
.+++.+||-+|||.. ..+..+++.....++++.|. ++-++.+++..-..++. .|... . .+.+ |+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 677899999999854 55666777777778999997 66777776653333332 22110 0 1234 777754
Q ss_pred cccccCChhHHHHHHHHHHHhCCC-CcEEEEEeeec
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPG-NGKVIVMNSIV 297 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~Lkp-gG~lli~e~~~ 297 (360)
-.- ...+......+++ +|+++++-...
T Consensus 105 ~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 105 AGR--------IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp SCC--------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CCC--------chHHHHHHHHHHHhcCceEEEEEec
Confidence 221 2456677777765 59999877543
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=0.24 Score=30.08 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=28.0
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
++..|.++.|.|.+.||..+|. +.. ++-.+|.++-=.++
T Consensus 7 LLr~LA~G~PVs~~~LA~alg~----~~~---eV~~aL~~~p~tEy 45 (60)
T d1s6la1 7 LLRELAKGRPVSRTTLAGILDW----PAE---RVAAVLEQATSTEY 45 (60)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTC----CHH---HHHHHHTTCCSSCE
T ss_pred HHHHHhCCCCcCHHHHHHHhCC----CHH---HHHHHHHhCCCcee
Confidence 5677888669999999999999 544 44455555544444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.63 E-value=1 Score=33.63 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCCcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC--------CCCCcEEEeccc
Q 018145 195 FQNVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES--------VPEGDAILMKWI 264 (360)
Q Consensus 195 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~--------~~~~D~i~~~~v 264 (360)
.+++.+||=.|+|.- ..+..+++. .+.++++.+. ++-.+.+++.. .+.+...-.++ .+..|.++....
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~G-a~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELG-ADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTT-CSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcC-cceecccccchhhhhcccccCCCceEEeecC
Confidence 567788999998765 444455555 4568888886 65555555432 22222111111 112244433221
Q ss_pred cccCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 018145 265 LHCWDDDHCLRILKNCYKAVPGNGKVIVMNS 295 (360)
Q Consensus 265 lh~~~~~~~~~~L~~i~~~LkpgG~lli~e~ 295 (360)
. ...+....+.|+|||+++++-.
T Consensus 103 ----~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 ----S----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ----C----HHHHHHHHHHhccCCceEeccc
Confidence 1 2468899999999999999753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=84.27 E-value=3 Score=31.29 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=57.6
Q ss_pred CCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEec-CCCCC--------CCCC-cEEEec
Q 018145 195 FQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGG-NMFES--------VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-d~~~~--------~~~~-D~i~~~ 262 (360)
.+++.+||=+|+|. |..+..+++.....+++..|. +.-.+.+++......+.. +..+. .+.+ |+|+-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 67788999998864 456777888887788999987 666666655433333321 21111 1234 988875
Q ss_pred cccccCChhHHHHHHHHHHHhCCCC-cEEEEEe
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGN-GKVIVMN 294 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~Lkpg-G~lli~e 294 (360)
.... ..++.+...+++| |.+++.-
T Consensus 106 ~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred CCch--------hHHHHHHHHHhcCCcceEEec
Confidence 4332 3567778888887 4555443
|
| >d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein YhgG domain: Hypothetical protein YhgG species: Escherichia coli [TaxId: 562]
Probab=83.64 E-value=0.66 Score=29.40 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=38.6
Q ss_pred hhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 49 VFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 49 lfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
|=|.|+-.|...+.+|++.+.. +.+.++..|+-|+++|=+++-
T Consensus 7 vRD~iAL~G~~da~qlS~qL~~----P~Plv~AMLerL~aMGK~eri 49 (78)
T d1xn7a_ 7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCcccHHHHHHHHcC----ChHHHHHHHHHHHHhhcceec
Confidence 4466777789999999999999 999999999999999999986
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.98 E-value=0.37 Score=30.59 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|+|-++||+.+|+ ..+-+.|.|+.|...|++..
T Consensus 29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~ 61 (69)
T d1i5za1 29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISA 61 (69)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7999999999999 88999999999999999996
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=82.95 E-value=1.4 Score=31.42 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEeccccccCChhHHHHHH
Q 018145 206 GGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWILHCWDDDHCLRIL 277 (360)
Q Consensus 206 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~vlh~~~~~~~~~~L 277 (360)
||.|..+..+++.+.+-.++++|. +..++..+ ..++.++.||..++ +.+++.+++.. . +|.... .+
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~-~~ 79 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETI-HC 79 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHH-HH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhH-HH
Confidence 566888888999886666667766 55555443 25789999998873 22346666532 1 233333 34
Q ss_pred HHHHHhCCCCcEEEEEe
Q 018145 278 KNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 278 ~~i~~~LkpgG~lli~e 294 (360)
-...+.+.|..+++..-
T Consensus 80 ~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 80 ILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHCSSSCEEEEC
T ss_pred HHHHHHHCCCceEEEEE
Confidence 44456678887766543
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=82.55 E-value=0.6 Score=30.49 Aligned_cols=33 Identities=30% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
|+|-++||+.+|+ ..+-+.|.|..|...|++..
T Consensus 29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~ 61 (81)
T d2gaua1 29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLAL 61 (81)
T ss_dssp CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 8999999999999 88999999999999999996
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.26 E-value=0.66 Score=30.27 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCceeecc
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLYALN 106 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y~~t 106 (360)
|+|-++||..+|+ ..+-+.|.|..|...|+|+. ...+.+...
T Consensus 30 ~~t~~eiA~~lG~----sretvsr~l~~l~~~g~I~~---~~~~~i~I~ 71 (80)
T d1ft9a1 30 DFTVEEIANLIGS----SRQTTSTALNSLIKEGYISR---QGRGHYTIP 71 (80)
T ss_dssp CCCHHHHHHHHCS----CHHHHHHHHHHHHHTTSSEE---CSTTCEECS
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE---CCCCeEEEC
Confidence 8999999999999 89999999999999999996 234445443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.17 E-value=0.18 Score=38.44 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=59.7
Q ss_pred CcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCC--CCcEEEecCCCC---CCCCCcEEEeccccccCC
Q 018145 197 NVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSY--AGVEHVGGNMFE---SVPEGDAILMKWILHCWD 269 (360)
Q Consensus 197 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~d~~~---~~~~~D~i~~~~vlh~~~ 269 (360)
++.+|+-||+|. |..+...+... ...++.+|. ++.+++.+.. .++++...+-.. ...++|+|+..-.+.--.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 468999999995 55666677766 578888887 6666544332 335544433211 133459998765433211
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeeecCC
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVMNSIVPE 299 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~e~~~~~ 299 (360)
.+ .-+=++..+.||||+.+ +|...+.
T Consensus 110 aP--~lIt~~mv~~Mk~GSVI--VDvaidq 135 (168)
T d1pjca1 110 AP--ILVPASLVEQMRTGSVI--VDVAVDQ 135 (168)
T ss_dssp CC--CCBCHHHHTTSCTTCEE--EETTCTT
T ss_pred cC--eeecHHHHhhcCCCcEE--EEeecCC
Confidence 11 12356788999999954 4655543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=82.00 E-value=0.73 Score=35.01 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=50.5
Q ss_pred ceEEEEcCCcchHHHH--HHhhCCCCeEEEecc-hhHHHhCCCC-------CCcEEEe------cCCCCCCCCCcEEEec
Q 018145 199 ERLVDVGGGFGVTLSM--ITSKYPQIKAVNFDL-PHVVQDAPSY-------AGVEHVG------GNMFESVPEGDAILMK 262 (360)
Q Consensus 199 ~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~------~d~~~~~~~~D~i~~~ 262 (360)
.+|.=||+|....+.+ |++. +..++++|. ++-++..++. +...... .|..+..+..|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 4677889986644433 3333 567888887 5555543321 1111111 1111113345998875
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEE
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIV 292 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli 292 (360)
- +......+++.+...|+++..+++
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred E-----chhHHHHHHHHhhhccCCCCEEEE
Confidence 2 455677899999999999876543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.00 E-value=0.3 Score=37.64 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=54.3
Q ss_pred CcceEEEEcCCcc-hHHHHHHhhCCCCeEEEecc-hhHHHhCCCC-C-CcEEE----------ec-------CCCCC---
Q 018145 197 NVERLVDVGGGFG-VTLSMITSKYPQIKAVNFDL-PHVVQDAPSY-A-GVEHV----------GG-------NMFES--- 252 (360)
Q Consensus 197 ~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~----------~~-------d~~~~--- 252 (360)
++.+||-||+|.. ..+...+..+ +..++++|. +...++.+.. . .+++. .+ ++...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 4689999999964 5566666666 668888887 5555544332 1 11110 00 11110
Q ss_pred -----CCCCcEEEeccccccCChhHHHHHHHHHHHhCCCCcEEEEEeeec
Q 018145 253 -----VPEGDAILMKWILHCWDDDHCLRILKNCYKAVPGNGKVIVMNSIV 297 (360)
Q Consensus 253 -----~~~~D~i~~~~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e~~~ 297 (360)
..+.|+|+..-.+..-..+. -+=+...+.||||+.+ +|...
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVI--VDvai 152 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVI--IDLAV 152 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEE--EETTG
T ss_pred HHHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEE--EEEee
Confidence 22349888765544322221 2456788899999954 46544
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=81.68 E-value=3.6 Score=29.10 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=47.1
Q ss_pred eEEEEcCCcchHHHHHHhhC--CCCeEEEecc-hhHHHhCCCCCCcEEEecCCCCC-------CCCCcEEEeccccccCC
Q 018145 200 RLVDVGGGFGVTLSMITSKY--PQIKAVNFDL-PHVVQDAPSYAGVEHVGGNMFES-------VPEGDAILMKWILHCWD 269 (360)
Q Consensus 200 ~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 269 (360)
+++=+|+ |.++..+++.+ -+..++++|. ++.++.++.. ....+.+|..++ +.++|.+++... +
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 3455555 55555555543 2456677776 8888887653 456778888763 123376655321 1
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEE
Q 018145 270 DDHCLRILKNCYKAVPGNGKVIVM 293 (360)
Q Consensus 270 ~~~~~~~L~~i~~~LkpgG~lli~ 293 (360)
++....+...+++ +.|..+++..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~iiar 97 (134)
T d2hmva1 75 NIQASTLTTLLLK-ELDIPNIWVK 97 (134)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred hHHhHHHHHHHHH-HcCCCcEEee
Confidence 2233334444444 4455666543
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=81.66 E-value=0.95 Score=28.57 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 58 ELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 58 ~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++..+||+.+|+ ...-+++-|+.|++.|+|+..
T Consensus 25 ~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 58 (69)
T d2hs5a1 25 RLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE 58 (69)
T ss_dssp EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 5678999999999 889999999999999999985
|
| >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Methicillin resistance regulatory protein MecI species: Staphylococcus aureus [TaxId: 1280]
Probab=81.59 E-value=0.24 Score=35.44 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=39.5
Q ss_pred HhhChhhHhhhCCCCCHHHHHHHh----CcCCCCCcCcHHHHHHHHhcCcceeec
Q 018145 45 IQLGVFEIIAKAGELSAPEIAAQL----QAQNVKAPMMLDRMLRLLVSHRVLECS 95 (360)
Q Consensus 45 ~~lglfd~L~~~g~~t~~~la~~~----~~~~~~~~~~~~~~L~~L~~~g~l~~~ 95 (360)
.++.|...|=..||.|+.+|.+.+ ++ .+.-+..+|+-|+..|+|++.
T Consensus 8 ~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~----~~sTv~t~L~rL~~Kg~l~r~ 58 (120)
T d1okra_ 8 AEWEVMNIIWMKKYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 58 (120)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhcccCc----cHHhHHHHHHHHHHCCCeEEE
Confidence 466777777777899999988887 56 677899999999999999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.98 E-value=2.6 Score=31.78 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=61.1
Q ss_pred HHhhcccCCCcceEEEEcCCc-chHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEe---cCCCCC------CCCC
Q 018145 188 ILEHYEGFQNVERLVDVGGGF-GVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVG---GNMFES------VPEG 256 (360)
Q Consensus 188 i~~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d~~~~------~~~~ 256 (360)
+.+... .+++.+||=+|+|. |.++..+++.....+++++|. ++-++.|++..--.++. .|.... .+.+
T Consensus 21 v~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 21 AVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp HHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 334333 67788999999985 466777888777789999998 77788777653222322 221110 1234
Q ss_pred -cEEEeccccccCChhHHHHHHHHHHHhC-CCCcEEEEEeeec
Q 018145 257 -DAILMKWILHCWDDDHCLRILKNCYKAV-PGNGKVIVMNSIV 297 (360)
Q Consensus 257 -D~i~~~~vlh~~~~~~~~~~L~~i~~~L-kpgG~lli~e~~~ 297 (360)
|+++-...- ...++.....+ +++|+++++-...
T Consensus 100 ~d~vi~~~g~--------~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 100 VGYTFEVIGH--------LETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp CCEEEECSCC--------HHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred ceEEEEeCCc--------hHHHHHHHHHhhcCCeEEEEEEccc
Confidence 877654321 23345555555 4559999876543
|
| >d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: FaeA-like domain: P fimbrial regulatory protein PapI species: Escherichia coli [TaxId: 562]
Probab=80.82 E-value=0.92 Score=27.77 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=38.2
Q ss_pred ChhhHhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecc
Q 018145 48 GVFEIIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSV 96 (360)
Q Consensus 48 glfd~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~ 96 (360)
.|+..|.+.++-+-.|||+.+|+ ..-..+..|-.|...|.|.++.
T Consensus 4 ~Il~fl~~~~~~~T~EIAea~gv----saYQARyYL~~Lekegki~RsP 48 (73)
T d2htja1 4 EILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRSP 48 (73)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhcCCccHHHHHHHhhh----HHHHHHHHHHHHHHhcCcccCh
Confidence 46677777667799999999999 7778889999999999999853
|
| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Chlorophenol reduction protein CprK species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=80.31 E-value=0.68 Score=30.17 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHHHHhhChhh----HhhhCCCCCHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceee
Q 018145 39 MATQAAIQLGVFE----IIAKAGELSAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLEC 94 (360)
Q Consensus 39 ~~l~~a~~lglfd----~L~~~g~~t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~ 94 (360)
.++..+...|... .+.- |+|-++||..+|+ ..+-+.+.|..|...|+|..
T Consensus 9 ~L~~L~~~~g~~~~~~~~i~~--~lt~~elA~~~g~----sretvsr~l~~l~~~glI~~ 62 (80)
T d3e5ua1 9 LFYELCSSQGKRVGDTYEITM--PLSQKSIGEITGV----HHVTVSRVLASLKRENILDK 62 (80)
T ss_dssp HHHHHHHHHCEEETTEEECCS--CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHhCCCCCCCeEEee--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe
Confidence 3444455556543 1222 8999999999999 88999999999999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.29 E-value=1.8 Score=32.71 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=55.4
Q ss_pred CCCcceEEEEc--CCcchHHHHHHhhCCCCeEEEecc-hhHHHhCCCCCCcEEEecC---CCCC-----CCCC-cEEEec
Q 018145 195 FQNVERLVDVG--GGFGVTLSMITSKYPQIKAVNFDL-PHVVQDAPSYAGVEHVGGN---MFES-----VPEG-DAILMK 262 (360)
Q Consensus 195 ~~~~~~vLDiG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~-----~~~~-D~i~~~ 262 (360)
.+++.+||=.| +|.|.++..+++.. +.+++.... ++-.+.+++..--..+... +.+. .+.+ |+|+..
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~ 101 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 101 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence 56778999877 35678888888876 456555443 5556666554222222211 1111 1234 988864
Q ss_pred cccccCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 018145 263 WILHCWDDDHCLRILKNCYKAVPGNGKVIVMN 294 (360)
Q Consensus 263 ~vlh~~~~~~~~~~L~~i~~~LkpgG~lli~e 294 (360)
-. . ..++.+.+.|+|+|+++.+-
T Consensus 102 ~g-----~----~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 102 LA-----G----EAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CC-----T----HHHHHHHHTEEEEEEEEECS
T ss_pred cc-----c----hHHHHHHHHhcCCCEEEEEc
Confidence 32 1 25777889999999999874
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=80.06 E-value=0.8 Score=29.72 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=34.0
Q ss_pred CC-CHHHHHHHhCcCCCCCcCcHHHHHHHHhcCcceeecccCCCcee
Q 018145 58 EL-SAPEIAAQLQAQNVKAPMMLDRMLRLLVSHRVLECSVSGGERLY 103 (360)
Q Consensus 58 ~~-t~~~la~~~~~~~~~~~~~~~~~L~~L~~~g~l~~~~~~~~~~y 103 (360)
.+ |..+||+.+|+ +..-+++-|+.|++.|+|... ...+.|
T Consensus 21 ~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~--~g~G~~ 61 (78)
T d3bwga1 21 KLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQV--RGSGIF 61 (78)
T ss_dssp BCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE--TTTEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE--cCcEEE
Confidence 55 89999999999 889999999999999999985 234444
|