Citrus Sinensis ID: 018177


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
cccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHEEccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccEEEEEccHcHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mseassssthrgSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIIlsgeeggicpaedgidsrlCFYDVLADhyvrmpesGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEValeparlnkipvqVQRDLFLVLSRFIFFYNSVDKLESFLkqfpvfpnaflvggsadFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTClysftspggpmyptraVRHAAWDALDflfpvgqyprHVISLFFRLlypwcwpsscwNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
mseassssthrgsAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGeeggicpaedgIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFsswekvraekns
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
***************************************LLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEK*******
******************LTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSW**V******
***********GSAYLNALTQEIEKKL********QRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWE********
************SAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVR*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSEASSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEEGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIFEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEPVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVGQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
225435022357 PREDICTED: uncharacterized protein LOC10 0.988 0.997 0.814 1e-169
224054823364 predicted protein [Populus trichocarpa] 0.997 0.986 0.796 1e-164
224104479359 predicted protein [Populus trichocarpa] 0.986 0.988 0.773 1e-158
363807874358 uncharacterized protein LOC100815374 [Gl 0.991 0.997 0.749 1e-158
357472745358 hypothetical protein MTR_4g063570 [Medic 0.991 0.997 0.740 1e-157
18424303359 uncharacterized protein [Arabidopsis tha 0.95 0.952 0.771 1e-156
21537130359 unknown [Arabidopsis thaliana] 0.95 0.952 0.771 1e-156
297796947359 hypothetical protein ARALYDRAFT_496133 [ 0.95 0.952 0.769 1e-155
449462625358 PREDICTED: uncharacterized protein LOC10 0.986 0.991 0.741 1e-154
297788302363 predicted protein [Arabidopsis lyrata su 0.933 0.925 0.761 1e-152
>gi|225435022|ref|XP_002284193.1| PREDICTED: uncharacterized protein LOC100260346 [Vitis vinifera] gi|297746114|emb|CBI16170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/356 (81%), Positives = 321/356 (90%)

Query: 5   SSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGE 64
           S +ST + SAYL ALTQEIEKKL RALAS SQRRNLL++LFADIALEVDDRARD+ILSGE
Sbjct: 2   SQASTAQSSAYLTALTQEIEKKLLRALASQSQRRNLLEQLFADIALEVDDRARDMILSGE 61

Query: 65  EGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWI 124
           E  I P E+  +S+LCFYDVLADHYVR+PE+G+ ILDLIVQLWSQLF SHIFALLFHKW+
Sbjct: 62  EDVISPVEERSESKLCFYDVLADHYVRVPENGKSILDLIVQLWSQLFASHIFALLFHKWL 121

Query: 125 FEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPV 184
           FEVQL N EVL RYSSALVQGATNVFWIDIQTN+  FQSLFRYLLEEVAL P RLNKI  
Sbjct: 122 FEVQLENSEVLFRYSSALVQGATNVFWIDIQTNTMRFQSLFRYLLEEVALVPTRLNKIAP 181

Query: 185 QVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVE 244
           Q QRDL+L+LSRFIFFYN VDKLESFLK+FP+FPN+FL GG AD FVIE+ADQLQKLKVE
Sbjct: 182 QAQRDLYLLLSRFIFFYNFVDKLESFLKEFPIFPNSFLAGGPADIFVIELADQLQKLKVE 241

Query: 245 PVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPV 304
           PVL+HYLSQIKVLQG+ELRMTTSTRLK CLYSFTSPGGPMYPTR VRHAAW+ALDFLFPV
Sbjct: 242 PVLVHYLSQIKVLQGLELRMTTSTRLKACLYSFTSPGGPMYPTRIVRHAAWEALDFLFPV 301

Query: 305 GQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS 360
           G+YPRH+ISLFFRLLYPW WPSSCWNFIMS +KAVL++LLR++FSS EK+R  KN+
Sbjct: 302 GRYPRHLISLFFRLLYPWYWPSSCWNFIMSCIKAVLYSLLRLIFSSLEKLRRPKNA 357




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054823|ref|XP_002298370.1| predicted protein [Populus trichocarpa] gi|222845628|gb|EEE83175.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104479|ref|XP_002313449.1| predicted protein [Populus trichocarpa] gi|222849857|gb|EEE87404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807874|ref|NP_001241933.1| uncharacterized protein LOC100815374 [Glycine max] gi|255645052|gb|ACU23025.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357472745|ref|XP_003606657.1| hypothetical protein MTR_4g063570 [Medicago truncatula] gi|355507712|gb|AES88854.1| hypothetical protein MTR_4g063570 [Medicago truncatula] Back     alignment and taxonomy information
>gi|18424303|ref|NP_568917.1| uncharacterized protein [Arabidopsis thaliana] gi|332009876|gb|AED97259.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537130|gb|AAM61471.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796947|ref|XP_002866358.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] gi|297312193|gb|EFH42617.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449462625|ref|XP_004149041.1| PREDICTED: uncharacterized protein LOC101221721 [Cucumis sativus] gi|449512817|ref|XP_004164148.1| PREDICTED: uncharacterized protein LOC101231975 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297788302|ref|XP_002862281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297307623|gb|EFH38539.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query360
TAIR|locus:2168158359 AT5G59960 "AT5G59960" [Arabido 0.972 0.974 0.768 1.9e-145
TAIR|locus:2168158 AT5G59960 "AT5G59960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
 Identities = 269/350 (76%), Positives = 308/350 (88%)

Query:     6 SSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEE 65
             SSS  R SAYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE
Sbjct:     8 SSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEE 67

Query:    66 GGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIF 125
               I   E   D  LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+F
Sbjct:    68 DLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLF 127

Query:   126 EVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQ 185
             EV+L+N E+LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE  RL KIP+Q
Sbjct:   128 EVELDNQEILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQ 187

Query:   186 VQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEP 245
              QR+L+L+LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG  DF VIE+ DQLQKLKVEP
Sbjct:   188 AQRELYLLLSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEP 247

Query:   246 VLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVG 305
             VLLHYLSQ+K+LQGMELRMTTSTRLK CLYSFTSPGGPMYPTRAVRHAAWDALD LFPVG
Sbjct:   248 VLLHYLSQMKILQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALDSLFPVG 307

Query:   306 QYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVR 355
             +YPRH+ISLFFRLLYPW WPSSCWNF++S +KAVL++++R++FS  EK R
Sbjct:   308 RYPRHLISLFFRLLYPWYWPSSCWNFVVSCIKAVLYSIVRLIFSRREKPR 357


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      360       360   0.00082  117 3  11 22  0.45    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  248 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.25u 0.19s 30.44t   Elapsed:  00:00:01
  Total cpu time:  30.25u 0.19s 30.44t   Elapsed:  00:00:01
  Start:  Fri May 10 23:04:54 2013   End:  Fri May 10 23:04:55 2013


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00024368001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (357 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00