Citrus Sinensis ID: 018177
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 360 | ||||||
| 225435022 | 357 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.997 | 0.814 | 1e-169 | |
| 224054823 | 364 | predicted protein [Populus trichocarpa] | 0.997 | 0.986 | 0.796 | 1e-164 | |
| 224104479 | 359 | predicted protein [Populus trichocarpa] | 0.986 | 0.988 | 0.773 | 1e-158 | |
| 363807874 | 358 | uncharacterized protein LOC100815374 [Gl | 0.991 | 0.997 | 0.749 | 1e-158 | |
| 357472745 | 358 | hypothetical protein MTR_4g063570 [Medic | 0.991 | 0.997 | 0.740 | 1e-157 | |
| 18424303 | 359 | uncharacterized protein [Arabidopsis tha | 0.95 | 0.952 | 0.771 | 1e-156 | |
| 21537130 | 359 | unknown [Arabidopsis thaliana] | 0.95 | 0.952 | 0.771 | 1e-156 | |
| 297796947 | 359 | hypothetical protein ARALYDRAFT_496133 [ | 0.95 | 0.952 | 0.769 | 1e-155 | |
| 449462625 | 358 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.991 | 0.741 | 1e-154 | |
| 297788302 | 363 | predicted protein [Arabidopsis lyrata su | 0.933 | 0.925 | 0.761 | 1e-152 |
| >gi|225435022|ref|XP_002284193.1| PREDICTED: uncharacterized protein LOC100260346 [Vitis vinifera] gi|297746114|emb|CBI16170.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/356 (81%), Positives = 321/356 (90%)
Query: 5 SSSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGE 64
S +ST + SAYL ALTQEIEKKL RALAS SQRRNLL++LFADIALEVDDRARD+ILSGE
Sbjct: 2 SQASTAQSSAYLTALTQEIEKKLLRALASQSQRRNLLEQLFADIALEVDDRARDMILSGE 61
Query: 65 EGGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWI 124
E I P E+ +S+LCFYDVLADHYVR+PE+G+ ILDLIVQLWSQLF SHIFALLFHKW+
Sbjct: 62 EDVISPVEERSESKLCFYDVLADHYVRVPENGKSILDLIVQLWSQLFASHIFALLFHKWL 121
Query: 125 FEVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPV 184
FEVQL N EVL RYSSALVQGATNVFWIDIQTN+ FQSLFRYLLEEVAL P RLNKI
Sbjct: 122 FEVQLENSEVLFRYSSALVQGATNVFWIDIQTNTMRFQSLFRYLLEEVALVPTRLNKIAP 181
Query: 185 QVQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVE 244
Q QRDL+L+LSRFIFFYN VDKLESFLK+FP+FPN+FL GG AD FVIE+ADQLQKLKVE
Sbjct: 182 QAQRDLYLLLSRFIFFYNFVDKLESFLKEFPIFPNSFLAGGPADIFVIELADQLQKLKVE 241
Query: 245 PVLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPV 304
PVL+HYLSQIKVLQG+ELRMTTSTRLK CLYSFTSPGGPMYPTR VRHAAW+ALDFLFPV
Sbjct: 242 PVLVHYLSQIKVLQGLELRMTTSTRLKACLYSFTSPGGPMYPTRIVRHAAWEALDFLFPV 301
Query: 305 GQYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVRAEKNS 360
G+YPRH+ISLFFRLLYPW WPSSCWNFIMS +KAVL++LLR++FSS EK+R KN+
Sbjct: 302 GRYPRHLISLFFRLLYPWYWPSSCWNFIMSCIKAVLYSLLRLIFSSLEKLRRPKNA 357
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054823|ref|XP_002298370.1| predicted protein [Populus trichocarpa] gi|222845628|gb|EEE83175.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224104479|ref|XP_002313449.1| predicted protein [Populus trichocarpa] gi|222849857|gb|EEE87404.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|363807874|ref|NP_001241933.1| uncharacterized protein LOC100815374 [Glycine max] gi|255645052|gb|ACU23025.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|357472745|ref|XP_003606657.1| hypothetical protein MTR_4g063570 [Medicago truncatula] gi|355507712|gb|AES88854.1| hypothetical protein MTR_4g063570 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|18424303|ref|NP_568917.1| uncharacterized protein [Arabidopsis thaliana] gi|332009876|gb|AED97259.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21537130|gb|AAM61471.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297796947|ref|XP_002866358.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] gi|297312193|gb|EFH42617.1| hypothetical protein ARALYDRAFT_496133 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449462625|ref|XP_004149041.1| PREDICTED: uncharacterized protein LOC101221721 [Cucumis sativus] gi|449512817|ref|XP_004164148.1| PREDICTED: uncharacterized protein LOC101231975 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297788302|ref|XP_002862281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297307623|gb|EFH38539.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 360 | ||||||
| TAIR|locus:2168158 | 359 | AT5G59960 "AT5G59960" [Arabido | 0.972 | 0.974 | 0.768 | 1.9e-145 |
| TAIR|locus:2168158 AT5G59960 "AT5G59960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
Identities = 269/350 (76%), Positives = 308/350 (88%)
Query: 6 SSSTHRGSAYLNALTQEIEKKLQRALASPSQRRNLLQELFADIALEVDDRARDIILSGEE 65
SSS R SAYL ALTQEI+KKL RA+ SP+Q RNLLQ+LFADIALEVDDRA+D+ILS EE
Sbjct: 8 SSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEE 67
Query: 66 GGICPAEDGIDSRLCFYDVLADHYVRMPESGQRILDLIVQLWSQLFVSHIFALLFHKWIF 125
I E D LCF+DVLAD+YV++ E G+ ILDL+VQLWSQ F SHIF+LLFHKW+F
Sbjct: 68 DLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLF 127
Query: 126 EVQLNNDEVLLRYSSALVQGATNVFWIDIQTNSRHFQSLFRYLLEEVALEPARLNKIPVQ 185
EV+L+N E+LLRYSSALVQGATNVFWIDIQTN+R FQSLFRYLLEEVALE RL KIP+Q
Sbjct: 128 EVELDNQEILLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQ 187
Query: 186 VQRDLFLVLSRFIFFYNSVDKLESFLKQFPVFPNAFLVGGSADFFVIEVADQLQKLKVEP 245
QR+L+L+LSRFIFFYNSVDKL+SFL+ FP FPNAFL+GG DF VIE+ DQLQKLKVEP
Sbjct: 188 AQRELYLLLSRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEP 247
Query: 246 VLLHYLSQIKVLQGMELRMTTSTRLKTCLYSFTSPGGPMYPTRAVRHAAWDALDFLFPVG 305
VLLHYLSQ+K+LQGMELRMTTSTRLK CLYSFTSPGGPMYPTRAVRHAAWDALD LFPVG
Sbjct: 248 VLLHYLSQMKILQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALDSLFPVG 307
Query: 306 QYPRHVISLFFRLLYPWCWPSSCWNFIMSWLKAVLHTLLRVVFSSWEKVR 355
+YPRH+ISLFFRLLYPW WPSSCWNF++S +KAVL++++R++FS EK R
Sbjct: 308 RYPRHLISLFFRLLYPWYWPSSCWNFVVSCIKAVLYSIVRLIFSRREKPR 357
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.138 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 360 360 0.00082 117 3 11 22 0.45 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 622 (66 KB)
Total size of DFA: 248 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.25u 0.19s 30.44t Elapsed: 00:00:01
Total cpu time: 30.25u 0.19s 30.44t Elapsed: 00:00:01
Start: Fri May 10 23:04:54 2013 End: Fri May 10 23:04:55 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00024368001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (357 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00