Citrus Sinensis ID: 018180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MAADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHcccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEEEccccEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccHEEEEEccccEEccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccHHHHHHHHHHHcccccccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
maadkgkkrrqflphnrpvkkkgayplrpgiqgffitcdggrerqaSHEAIYVLDSFYEELvhgkgsgvkpagipnkplnkkivfasssddeddddnnvgekeeavegegkdkeggedqkgegkhsdtckdddrshenltnkktdphdaekvcsgkeMEAVTaenkeddknhesqtneaeeppakkqcleagasksvnndkvEEQSIDKLIEAELKELGDKNKRRFinldsgcngVAVVQMRkidgdpspkdIVQHMMTSvastrkpisrSILRVLPIELACYTSEEEISRAIKPLvaqyfpletqspQKFAVLYEARANSGIDRMKIINAVAksvpaphkvdlsnpdktIVVEIVKDY
Flexible Loop (DISEMBL)
maadkgkkrrqflphnrpvkkkgayplrpgIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSgvkpagipnkplnKKIVFasssddeddddnnvgekeeavegegkdkeggedqkgegkhsdtckdddrshenltnkktdphdaekvcsGKEMEAVTaenkeddknhesqtneaeeppakkQCLEagasksvnndkveeQSIDKLIEAELKElgdknkrrfinldsgcngVAVVQMRKIDGDPSPKDIVQHMMtsvastrkpisrsiLRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKsvpaphkvdlsnpdktiVVEIVKDY
Low Complexity Region (SEG)
MAADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFAsssddeddddNNvgekeeavegegkdkeggedqkgegkHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Disordered region (IsUnstruct)
***********************AYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKG*************************************************************************************************************************************************************RRFINLDSGCNGVAVVQMRKI**********************PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSV*************TIVVEI****
Disordered Region (DISOPRED)
************************YPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVH*******************************************************************************************************************************************************************INLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Disordered Region (DISEMBL)
*********RQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFAS****************************************************TNKKTDPHDAEKVCSGKEME*************************KKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Disordered Region (DISPRO)
*********RQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFAS********************************************************************************************************************EQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVKDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q24K03	357	THUMP domain-containing p	yes	no	0.387	0.389	0.339	7e-16
Q99J36	350	THUMP domain-containing p	yes	no	0.384	0.394	0.341	1e-15
Q9NXG2	353	THUMP domain-containing p	yes	no	0.384	0.390	0.329	6e-15
Q9VZD8	324	THUMP domain-containing p	yes	no	0.381	0.422	0.285	3e-12
P53072	289	tRNA acetyltransferase TA	yes	no	0.428	0.532	0.296	3e-08

>sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 20/159 (12%)

Query: 211 IEAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAS 263
           +EA LK E+GD         RRF +++SG N V  ++   I+    P+ +V H++  +  
Sbjct: 95  VEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDIYK 150

Query: 264 TRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANS 321
           T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F ++Y++R NS
Sbjct: 151 TKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNS 206

Query: 322 GIDRMKIINAVA---KSVPAPHKVDLSNPDKTIVVEIVK 357
            ++R ++I  +A    S+ + +KVDLSNP  T+VVEI+K
Sbjct: 207 HMNREEVIKELAGIVGSLNSENKVDLSNPQYTVVVEIIK 245

Bos taurus (taxid: 9913)

>sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 93/158 (58%), Gaps = 20/158 (12%)

Query: 212 EAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAST 264
           EA LK E+GD      K  RRF +++SG N V  ++   I+    P+ +V H++  +  T
Sbjct: 96  EAALKKEVGDIKASTEKRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKT 151

Query: 265 RKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANSG 322
           +K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F ++Y++R NS 
Sbjct: 152 KKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNSH 207

Query: 323 IDRMKIINAVA---KSVPAPHKVDLSNPDKTIVVEIVK 357
           ++R ++I  +A    S+ + +KVDL+NP+ T+VVEI+K
Sbjct: 208 MNREEVIKELAGIVGSLNSENKVDLTNPEYTVVVEIIK 245

Mus musculus (taxid: 10090)

>sp|Q9NXG2|THUM1_HUMAN THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 20/158 (12%)

Query: 212 EAELK-ELGD------KNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAST 264
           EA LK E+GD         RRF +++SG N V  ++   I+    P+ +V H++  +  T
Sbjct: 96  EAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKT 151

Query: 265 RKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--FAVLYEARANSG 322
           +K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F ++Y++R NS 
Sbjct: 152 KKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTFQIVYKSRNNSH 207

Query: 323 IDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
           ++R ++I  +A    ++ + +KVDL+NP  T+VVEI+K
Sbjct: 208 VNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIK 245

Homo sapiens (taxid: 9606)

>sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG15014 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 80/147 (54%), Gaps = 10/147 (6%)

Query: 216 KELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRV 275
           +E+  + K RF N+D+       ++ +  D    P  + +H++  +A+T K +SR +LR+
Sbjct: 114 REMLSQRKMRFQNVDTNTTNCVFIRTQLED----PVALGKHIINDIATTGKSMSRFVLRL 169

Query: 276 LPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKS 335
           +PIE+ C  +  +I  A   L  ++F  E   P  + +++  R N  I R +II  +A+ 
Sbjct: 170 VPIEVVCRANMPDIITAAGELFDKHFLKE---PTSYGIIFNHRYNQQIKRDQIITQLAEL 226

Query: 336 VPAP---HKVDLSNPDKTIVVEIVKDY 359
           V +    +KVDL    K+I+VE+++ +
Sbjct: 227 VNSKNVGNKVDLKEAKKSIIVEVLRGW 253

Drosophila melanogaster (taxid: 7227)

>sp|P53072|TAN1_YEAST tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 28/182 (15%)

Query: 199 NDKVEEQSIDKLIEAELKEL-----------GDKNKR---RFINLDSGCNGVAVVQMRKI 244
           ND+ ++ SI+  I+ EL+EL           G+  K+    FI+L+  C  V   + RK 
Sbjct: 74  NDEKKDLSIEDQIKKELQELKGEETGKDLSSGETKKKDPLAFIDLNCEC--VTFCKTRK- 130

Query: 245 DGDPSPKDIVQHMMTSVASTRKPISRS--ILRVLPIELACYTSEEEISRAIKPLVAQYF- 301
                P++ V  +M  +A  +  + R+  + ++ PI  +C    E++ +    ++  +F 
Sbjct: 131 --PIVPEEFVLSIMKDLADPKNMVKRTRYVQKLTPITYSCNAKMEQLIKLANLVIGPHFH 188

Query: 302 -PLETQSPQKFAVLYEARANSGIDRMKIINAVAKSV-----PAPHKVDLSNPDKTIVVEI 355
            P   +   KFAV    R  + I+RM IIN V K V        H VDL N DK I+VE 
Sbjct: 189 DPSNVKKNYKFAVEVTRRNFNTIERMDIINQVVKLVNKEGSEFNHTVDLKNYDKLILVEC 248

Query: 356 VK 357
            K
Sbjct: 249 FK 250

Probable tRNA acetyltransferase required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs. Binds RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
225436571	392	PREDICTED: uncharacterized protein LOC10	0.966	0.885	0.639	1e-115
224104217	378	predicted protein [Populus trichocarpa]	0.924	0.878	0.617	1e-113
224054516	379	predicted protein [Populus trichocarpa]	0.949	0.899	0.616	1e-113
255544952	382	thump domain protein, putative [Ricinus	0.966	0.908	0.638	1e-112
356497337	384	PREDICTED: uncharacterized protein LOC10	0.958	0.895	0.594	1e-106
363808318	377	uncharacterized protein LOC100812892 [Gl	0.958	0.912	0.588	1e-104
449442547	386	PREDICTED: THUMP domain-containing prote	0.983	0.914	0.614	1e-104
449476100	384	PREDICTED: THUMP domain-containing prote	0.974	0.911	0.609	1e-103
18416857	376	THUMP domain-containing protein [Arabido	0.952	0.909	0.558	1e-99
297811371	362	THUMP domain-containing protein [Arabido	0.910	0.903	0.564	3e-99

>gi|225436571|ref|XP_002278600.1| PREDICTED: uncharacterized protein LOC100244787 [Vitis vinifera] gi|297734958|emb|CBI17192.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/358 (63%), Positives = 275/358 (76%), Gaps = 11/358 (3%)

Query: 5   KGKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVH 63
           K KKR+Q +LPHN+PVKKKG YPL PG+QGFFITCDGGRERQAS EA+ V+DSF+EELVH
Sbjct: 15  KNKKRKQRYLPHNKPVKKKGGYPLHPGVQGFFITCDGGRERQASREALNVIDSFFEELVH 74

Query: 64  GKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQKGEG 123
           GK SGVK + +PNKP+NKKI F+ S    DDDD+++ ++E+  +   +     E+   E 
Sbjct: 75  GKDSGVKLSMLPNKPMNKKIKFSYSDSGSDDDDDDIDDEEDKSDLHREKDANDENPSNEK 134

Query: 124 KHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKN----HESQTNEA 179
            H    K+DD   EN   +K D    +K   G E +   A+ ++ DKN    +E+Q  +A
Sbjct: 135 SHPQ--KNDDVCRENQNKEKAD----DKTQDGNENQENDADGEKADKNTEDGNENQEVDA 188

Query: 180 EEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVV 239
           EEP AKKQCLE  AS  + ++K EE+SIDKLIEAEL+ELGD+NKRRF NLDSGCNGV  V
Sbjct: 189 EEPSAKKQCLETDASTHIIHEKTEEKSIDKLIEAELQELGDRNKRRFGNLDSGCNGVVFV 248

Query: 240 QMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQ 299
           QMRK DGDPSPK+IVQHMMTS ASTRK +SR ILRVLP+E  CY SEEEIS AIKPLV Q
Sbjct: 249 QMRKKDGDPSPKEIVQHMMTSAASTRKHMSRFILRVLPVEATCYASEEEISIAIKPLVEQ 308

Query: 300 YFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
           YFP+ETQ+P+KFAVLYEAR+N+GIDRMKIIN+VAKSVP PHKVDLSNPD TIVV+IVK
Sbjct: 309 YFPVETQNPKKFAVLYEARSNTGIDRMKIINSVAKSVPGPHKVDLSNPDMTIVVQIVK 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104217|ref|XP_002313361.1| predicted protein [Populus trichocarpa] gi|222849769|gb|EEE87316.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/363 (61%), Positives = 266/363 (73%), Gaps = 31/363 (8%)

Query: 2   AADKGKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEE 60
           A    KKR+Q +LPHN+PV+KKG+YPL PG+QGFFITCDGGRERQAS EAI V+DSFYEE
Sbjct: 13  ATTNSKKRKQHYLPHNKPVRKKGSYPLHPGVQGFFITCDGGRERQASREAINVIDSFYEE 72

Query: 61  LVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGE------KEEAVEGEGKDKE 114
           L +GK + VK A  P+KP NKKI F+ S D+ D ++++  E      K EA EG      
Sbjct: 73  LAYGKDTSVKLADFPDKPTNKKIKFSYSDDEGDGEEDDDEEDGEDENKSEAPEG------ 126

Query: 115 GGEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHES 174
                            +D  ++N T+KK      E   S  + E  T + +E  KN E 
Sbjct: 127 -----------------NDAMNDNPTDKKVGSPTVENENSENQTEEKTNQ-EEGCKNDEK 168

Query: 175 QTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCN 234
           Q NEAE PPAKK+C E  A K+V  +KVEE+SID+LIE ELKELGDKNKRRF++LDSGCN
Sbjct: 169 QANEAEGPPAKKKCTETCAPKTVVQEKVEEKSIDRLIEDELKELGDKNKRRFLSLDSGCN 228

Query: 235 GVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIK 294
           GVA +QMRKIDGDP PKDIVQH+MTS ASTRK +SR I+R+LPIE+ACY SEEEISRAI 
Sbjct: 229 GVAFIQMRKIDGDPCPKDIVQHIMTSAASTRKHMSRFIIRMLPIEVACYASEEEISRAIA 288

Query: 295 PLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVE 354
           P+V +YFP++TQ P KFAV+YEARANSGIDRMKIIN+VAKSVP PHKVDL NPDKTIVVE
Sbjct: 289 PVVEKYFPVDTQDPLKFAVMYEARANSGIDRMKIINSVAKSVPGPHKVDLGNPDKTIVVE 348

Query: 355 IVK 357
           IVK
Sbjct: 349 IVK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054516|ref|XP_002298299.1| predicted protein [Populus trichocarpa] gi|222845557|gb|EEE83104.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/357 (61%), Positives = 263/357 (73%), Gaps = 16/357 (4%)

Query: 1   MAADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEE 60
           +  +  K+++++LPHN+PVKKKG+YPL PG+QGFFITCDGGRERQAS EAI V+DSFYEE
Sbjct: 13  VTTNSKKRKQRYLPHNKPVKKKGSYPLHPGVQGFFITCDGGRERQASREAINVIDSFYEE 72

Query: 61  LVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQK 120
           LV GK + VK A +PNKP+NKKI F+ S  + DDD+    ++E+ ++          D K
Sbjct: 73  LVFGKDTSVKLAELPNKPINKKIKFSYSDVEGDDDEEKEEDEEDGLDENKSGAPEANDAK 132

Query: 121 GEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAE 180
            E        D+      L N+ ++    EK              +E  KN + Q +EAE
Sbjct: 133 NENPA-----DEKLGSPCLENESSECQRREK-----------TNQEEGCKNDKKQESEAE 176

Query: 181 EPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQ 240
           E PAKK+C E  A KSV  +KVEE+SIDKLIE ELKELGDKNKR F++LDSGCNGV  VQ
Sbjct: 177 ELPAKKKCTETCAPKSVGQEKVEEKSIDKLIEDELKELGDKNKRHFLSLDSGCNGVVFVQ 236

Query: 241 MRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQY 300
           MRKIDGDP PKDIVQHMMTS ASTRK +SR ILRVLPIE+ACY SE+EISRAI P+V +Y
Sbjct: 237 MRKIDGDPCPKDIVQHMMTSAASTRKHMSRFILRVLPIEVACYASEDEISRAIAPVVEKY 296

Query: 301 FPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
           FP++TQ PQKFAV+YEARANSGIDRMKIIN+VAK VP PHKVDLSNPDKTIVVEIVK
Sbjct: 297 FPVDTQDPQKFAVMYEARANSGIDRMKIINSVAKCVPGPHKVDLSNPDKTIVVEIVK 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544952|ref|XP_002513537.1| thump domain protein, putative [Ricinus communis] gi|223547445|gb|EEF48940.1| thump domain protein, putative [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/357 (63%), Positives = 282/357 (78%), Gaps = 10/357 (2%)

Query: 1   MAADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEE 60
           +A +  K+++++LPHN+PVKKKG+YPL PG+QGFFITCDGGRERQASHEAI V+DSFYEE
Sbjct: 10  VATNSKKRKQRYLPHNKPVKKKGSYPLHPGVQGFFITCDGGRERQASHEAINVIDSFYEE 69

Query: 61  LVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQK 120
           LVH K + VK   +P KP +KKI F  S D+EDDDDN V  +EE  + E   +EG +   
Sbjct: 70  LVHAKDTSVK-LELPKKPSSKKIKFVYSDDEEDDDDNGVEGEEEEEDKEEDKEEGNK--- 125

Query: 121 GEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAE 180
                SDT +++D  ++N  N+K +  + +K C+G + E  T +N+   K+ E QTNE +
Sbjct: 126 -----SDTKQNNDDKNDNPANEKLEFPNVDKTCNGNQTEKNTCDNEAGGKD-EHQTNETD 179

Query: 181 EPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQ 240
           EPPAKKQ +E   S SV ++KVE++SIDKLIE ELKELGDK+KRRF NLDSGCNGV  VQ
Sbjct: 180 EPPAKKQIIETCVSSSVVHEKVEQRSIDKLIEDELKELGDKSKRRFTNLDSGCNGVVFVQ 239

Query: 241 MRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQY 300
           MRK DGDPSPKDI QH+MTS ASTRK +SR ILRVLP+E+ACY SEEEIS+A+ P+V +Y
Sbjct: 240 MRKRDGDPSPKDIAQHIMTSAASTRKHMSRFILRVLPVEIACYASEEEISKAMAPIVEKY 299

Query: 301 FPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
           FP++TQ+PQKFAVLYEARAN+GIDRMKIIN+VAKSVP PHKVDL+NPDKTIVVEIVK
Sbjct: 300 FPVDTQNPQKFAVLYEARANTGIDRMKIINSVAKSVPGPHKVDLNNPDKTIVVEIVK 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497337|ref|XP_003517517.1| PREDICTED: uncharacterized protein LOC100776466 [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/353 (59%), Positives = 263/353 (74%), Gaps = 9/353 (2%)

Query: 6   GKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEELVHGK 65
           GKKRR++LPHN+ VKKKG+YPLRPG+QGFFITCDGGRE QAS EA+ +LDSFYEELV G+
Sbjct: 13  GKKRRRYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDSFYEELVDGE 72

Query: 66  GSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQKGEGK- 124
                   +P+KPLNKKI FA S     D +    E+EE  E E +    G+++KG+ K 
Sbjct: 73  KE------LPSKPLNKKITFADSDSSSSDGEEEEEEEEEEEEEEEEAVHDGDEEKGDKKP 126

Query: 125 HSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPA 184
             DT  DD+ SH++   +K+DPH+ ++  + +E +  T +NK ++ N ++    A++ PA
Sbjct: 127 KLDTSSDDNASHDDGAGEKSDPHNVDEPHTQEENK--TCDNKGNNGNLKTTKGTADDLPA 184

Query: 185 KKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKI 244
            KQC +        +DKVE +SIDKLIE E KELGDKNKRRF+ LDSGCNGV  VQMRK 
Sbjct: 185 VKQCCKTNVPACNFSDKVEHKSIDKLIEEEFKELGDKNKRRFVKLDSGCNGVVFVQMRKK 244

Query: 245 DGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLE 304
           DGD SPKDIV  ++TS AST K +SR ILR+LPIE++CY S+EEISR IKPLV QYFP+E
Sbjct: 245 DGDRSPKDIVHRIVTSAASTGKHMSRFILRILPIEVSCYASKEEISRTIKPLVEQYFPVE 304

Query: 305 TQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
           TQ+P KFAVLYEARAN+G+DRM+II+AVAKSVP PHKVDL NPDKTIVVEI +
Sbjct: 305 TQNPLKFAVLYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIAR 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808318|ref|NP_001242247.1| uncharacterized protein LOC100812892 [Glycine max] gi|255647118|gb|ACU24027.1| unknown [Glycine max]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/357 (58%), Positives = 262/357 (73%), Gaps = 13/357 (3%)

Query: 2   AADKGKKRRQFLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEEL 61
           AA  GKKRR++LPHN+ VKKKG+YPLRPG+QGFFITCDGGRE QAS EA+ +LDSFYEEL
Sbjct: 6   AAANGKKRRRYLPHNKAVKKKGSYPLRPGVQGFFITCDGGREHQASREALNILDSFYEEL 65

Query: 62  VHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKEGGEDQKG 121
           V G+ S VK   +P+KPLNKKI FA S              ++  + E ++ + G+++KG
Sbjct: 66  VDGEHSSVKE--LPSKPLNKKITFADSDSSS--------SDDDDDDEEEEEVQEGDEEKG 115

Query: 122 EGK-HSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQTNEAE 180
           + K   DT  DD+ SH++   +K+DPH  ++  + +  E  T +NK  + N ++    A+
Sbjct: 116 DKKPKLDTSNDDNTSHDDGVPEKSDPHKVDEPHTQEVDE--TCDNKGANDNLKTTKGTAD 173

Query: 181 EPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQ 240
             PA KQC +        +DKVE++SIDKLIE E KELGDKNKR F+ LDSGCNGV  VQ
Sbjct: 174 GLPAVKQCCKTNVPACNFSDKVEQKSIDKLIEEEFKELGDKNKRCFVKLDSGCNGVVFVQ 233

Query: 241 MRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQY 300
           MRK DGD S KDIV  ++TS AST K +SR ILR+LPIE+ACY S+EEISRAIKPLV QY
Sbjct: 234 MRKKDGDRSLKDIVHRIVTSAASTGKHMSRFILRILPIEIACYASKEEISRAIKPLVEQY 293

Query: 301 FPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
           FP+ETQ+P KFAVLYEARAN+G+DRM+II+AVAKSVP PHKVDL NPDKTIVVEI +
Sbjct: 294 FPVETQNPHKFAVLYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIAR 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442547|ref|XP_004139043.1| PREDICTED: THUMP domain-containing protein 1-like [Cucumis sativus]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/363 (61%), Positives = 269/363 (74%), Gaps = 10/363 (2%)

Query: 1   MAADK-----GKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVL 54
           MAAD      GKKR+Q FLPHN+PVKKKG YPLRPG+QGFFITCDGGRERQAS EAI V+
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 55  DSFYEELVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDKE 114
           DSF++EL  GK  GVK   + +KPLNKKI F+ S     DDD++  + EE  E +G D E
Sbjct: 61  DSFFDELALGKNCGVKLTELADKPLNKKIKFSDSESSSSDDDDDDNDNEEEEEEKGDDDE 120

Query: 115 GGEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHES 174
             +  + E K     + ++ S+EN T    +PH  E V S  + E  + EN+ D K  E 
Sbjct: 121 NKKVPEEESKSPK--EQNEPSNENETTDVANPHQEETVASENQTEEKSNENERDMKCPEV 178

Query: 175 QTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCN 234
            + E EEPP KK C+EA ASKS+  +K  E+SID+LIEAEL+ELGDK KRRF NLDSGCN
Sbjct: 179 PSEEVEEPPNKKHCIEADASKSIIKEK--EKSIDQLIEAELQELGDKTKRRFFNLDSGCN 236

Query: 235 GVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIK 294
           GV  +QMRK DG+P P+ +VQHMMTS+ASTRK ISR ILR+LPIE+ACY S EEI+RAIK
Sbjct: 237 GVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAIK 296

Query: 295 PLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVE 354
           PL+ + FP+E+Q+P KFAVLYEARANSGIDR  IIN VAK+VP PHKVDL+NP+KTIVVE
Sbjct: 297 PLIEKNFPVESQNPVKFAVLYEARANSGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVE 356

Query: 355 IVK 357
           IVK
Sbjct: 357 IVK 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476100|ref|XP_004154640.1| PREDICTED: THUMP domain-containing protein 1-like [Cucumis sativus]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/364 (60%), Positives = 271/364 (74%), Gaps = 14/364 (3%)

Query: 1   MAADK-----GKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVL 54
           MAAD      GKKR+Q FLPHN+PVKKKG YPLRPG+QGFFITCDGGRERQAS EAI V+
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 55  DSFYEELVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGK-DK 113
           DSF++EL  GK  GVK   + +KPLNKKI F+ S     DDD++  E+EE  +G+   +K
Sbjct: 61  DSFFDELALGKNCGVKLTELADKPLNKKIKFSDSESSSSDDDDDDNEEEEEEKGDDDENK 120

Query: 114 EGGEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHE 173
           +  E++    K     + ++ S+EN T    +PH  E V S  + E  + EN+ D K  E
Sbjct: 121 KVPEEESKSPK-----EQNEPSNENETTDVANPHQEETVASENQTEEKSNENERDMKCPE 175

Query: 174 SQTNEAEEPPAKKQCLEAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGC 233
             + E EEPP KK C+EA ASKS+  +K  E+SID+LIEAEL+ELGDK KRRF NLDSGC
Sbjct: 176 VPSEEVEEPPNKKHCIEADASKSIIKEK--EKSIDQLIEAELQELGDKTKRRFFNLDSGC 233

Query: 234 NGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAI 293
           NGV  +QMRK DG+P P+ +VQHMMTS+ASTRK ISR ILR+LPIE+ACY S EEI+RAI
Sbjct: 234 NGVIFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAI 293

Query: 294 KPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVV 353
           KPL+ + FP+E+Q+P KFAVLYEARANSGIDR  IIN VAK+VP PHKVDL+NP+KTIVV
Sbjct: 294 KPLIEKNFPVESQNPVKFAVLYEARANSGIDRATIINTVAKAVPEPHKVDLNNPEKTIVV 353

Query: 354 EIVK 357
           EIVK
Sbjct: 354 EIVK 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416857|ref|NP_568274.1| THUMP domain-containing protein [Arabidopsis thaliana] gi|14586371|emb|CAC42902.1| putative protein [Arabidopsis thaliana] gi|22022558|gb|AAM83236.1| At5g12410 [Arabidopsis thaliana] gi|24797044|gb|AAN64534.1| At5g12410/At5g12410 [Arabidopsis thaliana] gi|332004423|gb|AED91806.1| THUMP domain-containing protein [Arabidopsis thaliana]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 202/362 (55%), Positives = 264/362 (72%), Gaps = 20/362 (5%)

Query: 2   AADKGKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEE 60
           + D+ KKR+Q + P NRPVKKKG+YPL+PG+QGFFI+CDGGRE QA+ EAI V+DSF+EE
Sbjct: 3   SGDQSKKRKQHYRPQNRPVKKKGSYPLKPGVQGFFISCDGGREFQAAQEAINVIDSFFEE 62

Query: 61  LVHGKGSGVKPAGIPNKPLNKKIVFASSSDDEDDDDNNVGEKEEAVEGEGKDK----EGG 116
           L+ G  S V P G+   P+NKK+ F+ S D+++++D +   +EE  +G+G DK    EGG
Sbjct: 63  LIQGTDSKVNP-GLFGNPINKKVTFSYSEDEDEEEDESNNGEEEENKGDG-DKAVVSEGG 120

Query: 117 EDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQT 176
            D   E + +    +D  + + +         +E  C  K++       +E+DK +  Q 
Sbjct: 121 NDLVNEKEIASEGVNDQVNEKEIA--------SEGSCEVKQLAENETVKEEEDKGN--QK 170

Query: 177 NEAEEPPAKKQCLE-AGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNG 235
           N  +EPP KK C E A     VN +   E+SIDKLIEAELKELGDK+KRRF+ LD GCNG
Sbjct: 171 NGGDEPPRKKTCTEEANPLAKVNENA--EKSIDKLIEAELKELGDKSKRRFMKLDPGCNG 228

Query: 236 VAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKP 295
           +  +QM+K DGDPSPK+IVQH MTS A+T+K +SR ILR+LPIE++CY SEEEISRAIKP
Sbjct: 229 LVFIQMKKRDGDPSPKEIVQHAMTSAAATKKHMSRFILRLLPIEVSCYPSEEEISRAIKP 288

Query: 296 LVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEI 355
           LV QYFP+ET++P+KFAVLY ARAN+G+DRMKIIN +AKS+PAPHKVDLSNP+ TIVVEI
Sbjct: 289 LVEQYFPIETENPRKFAVLYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMTIVVEI 348

Query: 356 VK 357
           +K
Sbjct: 349 IK 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811371|ref|XP_002873569.1| THUMP domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319406|gb|EFH49828.1| THUMP domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/363 (56%), Positives = 264/363 (72%), Gaps = 36/363 (9%)

Query: 2   AADKGKKRRQ-FLPHNRPVKKKGAYPLRPGIQGFFITCDGGRERQASHEAIYVLDSFYEE 60
           + D+ KKR+Q + P NRPVKKKG+YPL+PG+QGFFI+CDGGRE QAS EAI V+DSF+EE
Sbjct: 3   SGDQSKKRKQHYRPQNRPVKKKGSYPLKPGVQGFFISCDGGREYQASQEAINVIDSFFEE 62

Query: 61  LVHGKGSGVKPAGIPNKPLNKKIVFA-SSSDDEDDDDNNVGEKEEAVEGEGKDK----EG 115
           L+ G  S V P G+ + P+NKK+ F+ S  +D+++D++N GE+EE  +G+G DK    EG
Sbjct: 63  LIQGTDSKVNP-GLFDNPINKKVTFSYSEDEDDEEDESNYGEEEEN-KGDG-DKAVVSEG 119

Query: 116 GEDQKGEGKHSDTCKDDDRSHENLTNKKTDPHDAEKVCSGKEMEAVTAENKEDDKNHESQ 175
           G DQ  E + +                      +E  C  K++     E +E+DK +  Q
Sbjct: 120 GNDQVNEKEIA----------------------SEGSCEVKKLAENETEKEEEDKGN--Q 155

Query: 176 TNEAEEPPAKKQCLE-AGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCN 234
            N  +EPP KK C E A     VN +   E+SIDKLIEAELKELGDK+KRRF+ LD GCN
Sbjct: 156 KNGGDEPPRKKTCTEEANPLAKVNENA--EKSIDKLIEAELKELGDKSKRRFMKLDPGCN 213

Query: 235 GVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIK 294
           G+  +QM++ DGDPSPKDI QH MTS A+T+K +SR ILR+LPIE++CY SEEEISRAIK
Sbjct: 214 GLVFIQMKRRDGDPSPKDIAQHAMTSAAATKKHMSRFILRLLPIEVSCYPSEEEISRAIK 273

Query: 295 PLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVE 354
           PLV QYFP+ET++P+KFAVLY ARAN+G+DRMKIIN +AKS+PAPHKVDLSNP+ +IVVE
Sbjct: 274 PLVEQYFPIETENPRKFAVLYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMSIVVE 333

Query: 355 IVK 357
           +VK
Sbjct: 334 VVK 336

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:505006609	376	AT5G12410 "AT5G12410" [Arabido	0.635	0.606	0.589	4.8e-95
UNIPROTKB|F1NY67	313	THUMPD1 "Uncharacterized prote	0.442	0.507	0.337	5.9e-21
MGI|MGI:2444479	350	Thumpd1 "THUMP domain containi	0.431	0.442	0.313	1.7e-20
RGD|1308854	353	Thumpd1 "THUMP domain containi	0.431	0.439	0.307	7.1e-20
UNIPROTKB|Q24K03	357	THUMPD1 "THUMP domain-containi	0.431	0.434	0.313	8.8e-19
UNIPROTKB|I3LLD6	359	THUMPD1 "Uncharacterized prote	0.440	0.440	0.300	1.2e-18
UNIPROTKB|E2RBF4	358	THUMPD1 "Uncharacterized prote	0.440	0.441	0.327	2e-18
UNIPROTKB|Q9NXG2	353	THUMPD1 "THUMP domain-containi	0.431	0.439	0.307	1.3e-17
UNIPROTKB|J3KQB0	439	THUMPD1 "THUMP domain-containi	0.431	0.353	0.307	5e-17
FB|FBgn0035532	324	CG15014 [Drosophila melanogast	0.493	0.546	0.273	3.9e-14

TAIR|locus:505006609 AT5G12410 "AT5G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
 Identities = 138/234 (58%), Positives = 176/234 (75%)

Query:   126 SDTCKDDDRSHENLTNKKTDPHDA-EKVCSGKEMEAVTAENKEDDKNHESQTNEAEEPPA 184
             +D   + + + E + ++  +   A E  C  K++       +E+DK +  Q N  +EPP 
Sbjct:   121 NDLVNEKEIASEGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKGN--QKNGGDEPPR 178

Query:   185 KKQCLE-AGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRK 243
             KK C E A     VN +   E+SIDKLIEAELKELGDK+KRRF+ LD GCNG+  +QM+K
Sbjct:   179 KKTCTEEANPLAKVNENA--EKSIDKLIEAELKELGDKSKRRFMKLDPGCNGLVFIQMKK 236

Query:   244 IDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPL 303
              DGDPSPK+IVQH MTS A+T+K +SR ILR+LPIE++CY SEEEISRAIKPLV QYFP+
Sbjct:   237 RDGDPSPKEIVQHAMTSAAATKKHMSRFILRLLPIEVSCYPSEEEISRAIKPLVEQYFPI 296

Query:   304 ETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVDLSNPDKTIVVEIVK 357
             ET++P+KFAVLY ARAN+G+DRMKIIN +AKS+PAPHKVDLSNP+ TIVVEI+K
Sbjct:   297 ETENPRKFAVLYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMTIVVEIIK 350

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006310 "DNA recombination" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|F1NY67 THUMPD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 5.9e-21, Sum P(2) = 5.9e-21
 Identities = 59/175 (33%), Positives = 101/175 (57%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELK-ELG------DKNKRRFINLDSGCNGVAVVQMRKIDG 246
             S S   ++ EE+  D   EA LK E+G      ++  RRF +++SG N V  ++ R I+ 
Sbjct:    83 SGSEREEEREEEDDDDDAEAALKKEVGQIRASTERQLRRFQSVESGANNVVFIRTRGIE- 141

Query:   247 DPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQ 306
                P+++V H++  + +T+K  +R ILR+LPI   C    E++ +  +     +F    +
Sbjct:   142 ---PENLVHHILKDIHTTKKKKTRVILRMLPISGTCKAFLEDMKKYTETFFEPWFKAPNK 198

Query:   307 SPQKFAVLYEARANSGIDRMKIINAVAKSVPA--P-HKVDLSNPDKTIVVEIVKD 358
             S   F ++Y+AR NS ++R ++I  +A  V +  P +KVDL+NP  T+VVEI+K+
Sbjct:   199 ST--FQIVYKARNNSHMNREEVIKELAGIVGSLNPENKVDLNNPQYTVVVEIIKN 251

GO:0003723 "RNA binding" evidence=IEA

MGI|MGI:2444479 Thumpd1 "THUMP domain containing 1" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 53/169 (31%), Positives = 97/169 (57%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDI 253
             S S   D   E ++ K +  ++K   +K  RRF +++SG N V  ++   I+    P+ +
Sbjct:    86 SGSEGEDDDAEAALKKEV-GDIKASTEKRLRRFQSVESGANNVVFIRTLGIE----PEKL 140

Query:   254 VQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--F 311
             V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F
Sbjct:   141 VHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTF 196

Query:   312 AVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
              ++Y++R NS ++R ++I  +A    S+ + +KVDL+NP+ T+VVEI+K
Sbjct:   197 QIVYKSRNNSHMNREEVIKELAGIVGSLNSENKVDLTNPEYTVVVEIIK 245

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1308854 Thumpd1 "THUMP domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 7.1e-20, Sum P(2) = 7.1e-20
 Identities = 52/169 (30%), Positives = 97/169 (57%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDI 253
             S S   D   E ++ K +  ++K   +K  RRF +++SG N V  ++   I+    P+ +
Sbjct:    86 SGSEGEDDDAEAALKKEV-GDIKASTEKRLRRFQSVESGANNVVFIRTLGIE----PEKL 140

Query:   254 VQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--F 311
             V H++  +  T+K  +R ILR+LP+   C    E++ +  +  +  +F    ++P K  F
Sbjct:   141 VHHILQDMYKTKKKKTRVILRMLPVSGTCKAFLEDMKKYAETFLEPWF----KAPNKGTF 196

Query:   312 AVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
              ++Y++R NS ++R ++I  +A    S+ + +KVDL+NP+ T+VVEI+K
Sbjct:   197 QIVYKSRNNSHMNREEVIKELAGIVGSLNSENKVDLTNPEYTVVVEIIK 245

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q24K03 THUMPD1 "THUMP domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
 Identities = 53/169 (31%), Positives = 95/169 (56%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDI 253
             S S   D   E ++ K +  ++K   +   RRF +++SG N V  ++   I+    P+ +
Sbjct:    86 SGSEGEDDDVEAALKKEV-GDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKL 140

Query:   254 VQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--F 311
             V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F
Sbjct:   141 VHHILQDIYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTF 196

Query:   312 AVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
              ++Y++R NS ++R ++I  +A    S+ + +KVDLSNP  T+VVEI+K
Sbjct:   197 QIVYKSRNNSHMNREEVIKELAGIVGSLNSENKVDLSNPQYTVVVEIIK 245

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|I3LLD6 THUMPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 52/173 (30%), Positives = 99/173 (57%)

Query:   190 EAGASKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPS 249
             +   S+  ++D VE  ++ K +  ++K   +   RRF +++SG N V  ++   I+    
Sbjct:    84 QPSGSEGEDDDDVEA-ALKKEV-GDIKASTEMRLRRFQSVESGANNVVFIRTLGIE---- 137

Query:   250 PKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQ 309
             P+ +V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P 
Sbjct:   138 PEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPN 193

Query:   310 K--FAVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
             K  F ++Y++R NS ++R ++I  +A    S+ + +KVDL+NP  T+VVEI+K
Sbjct:   194 KGTFQIVYKSRNNSHMNREEVIKELAGIVGSLNSENKVDLTNPQYTVVVEIIK 246

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RBF4 THUMPD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 59/180 (32%), Positives = 100/180 (55%)

Query:   192 GASKSVNNDKVEEQSI--DKLIEAEL-KELGD------KNKRRFINLDSGCNGVAVVQMR 242
             G  K ++ D+    S   D  +EA L KE+GD         RRF +++SG N V  ++  
Sbjct:    74 GPEKFMDKDQQPSGSEGEDDDVEAALRKEVGDIKASTEMKLRRFQSVESGANNVVFIRTL 133

Query:   243 KIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFP 302
              I+    P+ +V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F 
Sbjct:   134 GIE----PEKLVHHILQDMYQTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF- 188

Query:   303 LETQSPQK--FAVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
                ++P K  F ++Y++R NS ++R ++I  +A    S+ + +KVDLSNP  T+VVEI+K
Sbjct:   189 ---KAPNKGTFQIVYKSRNNSHMNREEVIKELAGIVGSLNSENKVDLSNPQYTVVVEIIK 245

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9NXG2 THUMPD1 "THUMP domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 52/169 (30%), Positives = 94/169 (55%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDI 253
             S S   D   E ++ K +  ++K   +   RRF +++SG N V  ++   I+    P+ +
Sbjct:    86 SGSEGEDDDAEAALKKEV-GDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKL 140

Query:   254 VQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--F 311
             V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F
Sbjct:   141 VHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTF 196

Query:   312 AVLYEARANSGIDRMKIINAVAKSV---PAPHKVDLSNPDKTIVVEIVK 357
              ++Y++R NS ++R ++I  +A  V    + +KVDL+NP  T+VVEI+K
Sbjct:   197 QIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIK 245

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J3KQB0 THUMPD1 "THUMP domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
 Identities = 52/169 (30%), Positives = 94/169 (55%)

Query:   194 SKSVNNDKVEEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDI 253
             S S   D   E ++ K +  ++K   +   RRF +++SG N V  ++   I+    P+ +
Sbjct:   172 SGSEGEDDDAEAALKKEV-GDIKASTEMRLRRFQSVESGANNVVFIRTLGIE----PEKL 226

Query:   254 VQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQK--F 311
             V H++  +  T+K  +R ILR+LPI   C    E++ +  +  +  +F    ++P K  F
Sbjct:   227 VHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWF----KAPNKGTF 282

Query:   312 AVLYEARANSGIDRMKIINAVAKSV---PAPHKVDLSNPDKTIVVEIVK 357
              ++Y++R NS ++R ++I  +A  V    + +KVDL+NP  T+VVEI+K
Sbjct:   283 QIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIK 331

GO:0003723 "RNA binding" evidence=IEA

FB|FBgn0035532 CG15014 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 53/194 (27%), Positives = 98/194 (50%)

Query:   176 TNEAEEPPAKKQCLE-AGASKSVNNDK-----VEEQSID-KLIEAELKELGDKNKRRFIN 228
             + + E  P KKQ  E AG     ++ K       +   D +   A+ +E+  + K RF N
Sbjct:    67 SEKPENEPEKKQPEEGAGGDAGEDDPKPAAGGTSDDDDDLEAAAAKCREMLSQRKMRFQN 126

Query:   229 LDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEE 288
             +D+       ++ +  D    P  + +H++  +A+T K +SR +LR++PIE+ C  +  +
Sbjct:   127 VDTNTTNCVFIRTQLED----PVALGKHIINDIATTGKSMSRFVLRLVPIEVVCRANMPD 182

Query:   289 ISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPH---KVDLS 345
             I  A   L  ++F  E   P  + +++  R N  I R +II  +A+ V + +   KVDL 
Sbjct:   183 IITAAGELFDKHFLKE---PTSYGIIFNHRYNQQIKRDQIITQLAELVNSKNVGNKVDLK 239

Query:   346 NPDKTIVVEIVKDY 359
                K+I+VE+++ +
Sbjct:   240 EAKKSIIVEVLRGW 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011477 hypothetical protein (379 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
cd11717	158	cd11717, THUMP_THUMPD1_like, THUMP domain-containi	9e-39
pfam02926	92	pfam02926, THUMP, THUMP domain	1e-07
smart00981	83	smart00981, THUMP, The THUMP domain is named after	5e-05
cd11718	145	cd11718, THUMP_SPOUT, THUMP domain associated with	6e-04
COG1818	175	COG1818, COG1818, Predicted RNA-binding protein, c	8e-04

>gnl|CDD|212586 cd11717, THUMP_THUMPD1_like, THUMP domain-containing protein 1-like

 Score =  135 bits (341), Expect = 9e-39
 Identities = 49/136 (36%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 224 RRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACY 283
               ++++G   V  ++ R       P ++V+ +    AST+K  +R I R++PI++ C 
Sbjct: 20  NLLQSVETGVKNVVFIKTRP---PVDPVELVEKIFEDAASTKKKRTRFIQRLIPIDVTCK 76

Query: 284 TSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPAPHKVD 343
            S EEI +  K L+ ++FP     P+ FAV  ++R N+ + R ++I AVA+ VP  HKVD
Sbjct: 77  ASLEEIEKLAKELLKKHFPTAEP-PKTFAVECKSRNNNKLSRDEVIKAVAELVPEIHKVD 135

Query: 344 LSNPDKTIVVEIVKDY 359
           L NPDK I+VE++K+ 
Sbjct: 136 LKNPDKVILVEVIKNV 151

This family contains THUMP domain-only proteins including THUMP domain-containing protein 1 and Saccharomyces cerevisiae Tan1. Tan1 is non essential and has been shown to be required for the formation of the modified nucleoside N(4)-acetylcytidine (ac(4)C) in tRNA. To date, there is no functional information available about THUMPD1. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 158

>gnl|CDD|217290 pfam02926, THUMP, THUMP domain

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 274 RVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEAR-ANSGIDRMKIINAV 332
           RV+P E  C    E+I    K ++ + F       + FAV  + R  N      ++   V
Sbjct: 1   RVIPPEAECKADLEDILELAKEIIKEKFF----EGETFAVRTKRRGKNHEFTSREVNREV 56

Query: 333 AKSV--PAPHKVDLSNPDKTIVVEIVKD 358
            K++      KVDL NPD  + VEI+KD
Sbjct: 57  GKAILERTGLKVDLENPDIVVHVEILKD 84

The THUMP domain is named after after thiouridine synthases, methylases and PSUSs. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterized RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 92

>gnl|CDD|214952 smart00981, THUMP, The THUMP domain is named after after thiouridine synthases, methylases and PSUSs

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 285 SEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVA---KSVPAPH 340
             E++      L+      +    + FAV  + R  +     +++  A+           
Sbjct: 1   DLEDLYETALELIRWEKIFK--EGKTFAVRAKRRGKNHEFTSLEVKRAIGDKLLEKTGGR 58

Query: 341 KVDLSNPDKTIVVEIVKDY 359
           KVDL NPD  I VE+ KD 
Sbjct: 59  KVDLKNPDVVIRVELRKDK 77

The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterised RNA-binding domains. It is predicted that this domain is an RNA-binding domain The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 83

>gnl|CDD|212587 cd11718, THUMP_SPOUT, THUMP domain associated with SPOUT RNA Methylases

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 274 RVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARAN---SGIDRMKIIN 330
           RV+P++       +EI R  + +       ET     FAV    R     + ID   ++ 
Sbjct: 58  RVIPVDAEVKADLDEIVRVAEEIAKHISEGET-----FAVRTTRRGKHDFTSIDVNVVLG 112

Query: 331 AVAKSVPAPHKVDLSNPDKTIVVEIVKDY 359
           A  K +    +VDL+NPDK + VEI+ D 
Sbjct: 113 AAVKELTGA-EVDLNNPDKVVYVEIIGDR 140

Members of this archaeal protein family are characterized by containing an N-terminal THUMP domain and a C-terminal SPOUT RNA methyltransferase domain. No functional information is available The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 145

>gnl|CDD|224731 COG1818, COG1818, Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 271 SILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGI----DRM 326
            + RV+P+E+   T  +EI  A   L  +         + FAV  + R           +
Sbjct: 60  EVERVIPVEIEVETDLDEIEEAAAELAEEKIK----EGKTFAVRTKRRGKHDFTSRDVEV 115

Query: 327 KIINAVAKSVPAPHKVDLSNPDKTIVVEIVKD 358
            +  AV K+  A   VDL +PDK + VE++ D
Sbjct: 116 VVGEAVKKATGAE--VDLEDPDKVVWVEVLGD 145

Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG3943	291	consensus THUMP domain-containing proteins [Genera	100.0
PF02926	144	THUMP: THUMP domain; InterPro: IPR004114 The THUMP	99.65
COG1818	175	Predicted RNA-binding protein, contains THUMP doma	99.54
PRK01565	394	thiamine biosynthesis protein ThiI; Provisional	99.08
PRK08384	381	thiamine biosynthesis protein ThiI; Provisional	98.88
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	98.85
TIGR00342	371	thiazole biosynthesis/tRNA modification protein Th	98.77
COG0301	383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	98.66
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.7
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.81
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	95.51

>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=284.57  Aligned_cols=150  Identities=31%  Similarity=0.501  Sum_probs=131.5

Q ss_pred             cccCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhh--cCCCcccceEEeeeeeE
Q 018180          203 EEQSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVAS--TRKPISRSILRVLPIEL  280 (359)
Q Consensus       203 ee~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~--tk~~~TRfI~RLiPIq~  280 (359)
                      .+++|-+.|.+=-    +.+++.|..++.+|+||.|++++++   +-|.++|+.|++++.+  ++..+|||||||+||++
T Consensus       101 kdEe~gddLk~~~----~~~~~P~~Fv~~~~~Cv~f~~t~Kn---iVpe~~v~~i~~dm~elk~k~kRtR~~Qr~~Pi~~  173 (291)
T KOG3943|consen  101 KDEEVGDDLKAST----EMRLRPFQFVESGANCVVFIRTLKN---IVPEKLVHHILQDMYELKTKKKRTRVIQRMLPISG  173 (291)
T ss_pred             hhhhhHHHHhhhh----hhhcCchhhhhccCceEEeecccCc---cCchHHHHHHHHHHHhhhccchhhhhhhhhccccc
Confidence            4455555555422    2245569999999999999999986   9999999999999985  67899999999999999


Q ss_pred             EeeCCHHHHHHHHHHHHHhhCCCC-CCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEEe
Q 018180          281 ACYTSEEEISRAIKPLVAQYFPLE-TQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEIV  356 (359)
Q Consensus       281 tC~A~leeI~k~ak~Ll~k~F~~e-~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEVi  356 (359)
                      ||.|.|+.|.++|..+|.+||+.. +.+..||+|+|++|||+++.|++||+.|+.+|-   +..+|||+|||++|+|||+
T Consensus       174 tc~a~le~m~k~a~~VI~p~fkap~tgK~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~~VdL~n~D~t~~Ve~~  253 (291)
T KOG3943|consen  174 TCKAFLEDMKKYAETVIEPWFKAPNTGKKGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSENKVDLTNPDYTVVVEII  253 (291)
T ss_pred             hHHhhHHHHHHHHHHhhcccccCCCCCcCceEEEEEEeccccchhHHHHHHHHHHHHHhcCccceeeccCCCeEEEEEee
Confidence            999999999999999999999863 446779999999999999999999999999984   5789999999999999999


Q ss_pred             ccC
Q 018180          357 KDY  359 (359)
Q Consensus       357 Knv  359 (359)
                      |++
T Consensus       254 ks~  256 (291)
T KOG3943|consen  254 KAV  256 (291)
T ss_pred             ece
Confidence            863

>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8

Probab=99.65  E-value=1.8e-16  Score=133.83  Aligned_cols=88  Identities=36%  Similarity=0.461  Sum_probs=79.3

Q ss_pred             cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC--CCcccC
Q 018180          268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA--PHKVDL  344 (359)
Q Consensus       268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~--~hKVDL  344 (359)
                      .+|+++|++|++..|.+++++|.+.|..++..++...   ..||+|++++|+++ .++++++.+.||++|..  +++|||
T Consensus        46 ~~~~~~ri~p~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~tF~V~~~r~~~~~~~~s~ei~~~vg~~i~~~~~~~Vdl  122 (144)
T PF02926_consen   46 KLRGISRIIPICRFCEADLEEIKEKAKELLWEKFIKE---DKTFAVRCRRRGKHFPFTSMEIEREVGDAIKEKGGPKVDL  122 (144)
T ss_dssp             HSSSESEEEEEEEEEESSHHHHHHHHHCSHGGGHSHT---TSEEEEEEEEESSSSSSCHHHHHHHHHHHHHHHHHTEE-S
T ss_pred             cccceeEEEEEEEEcCCCHHHHHHHHHHHHHHHhCCC---CCEEEEEEEEcCCccccCHHHHHHHHHHHHHHHhCCCccC
Confidence            5679999999999999999999999999999888642   23999999999999 99999999999999964  479999


Q ss_pred             CCCCeEEEEEEecc
Q 018180          345 SNPDKTIVVEIVKD  358 (359)
Q Consensus       345 kNPD~tIlVEViKn  358 (359)
                      +|||++|.|||+++
T Consensus       123 ~~Pd~~i~Vev~~~  136 (144)
T PF02926_consen  123 KNPDVVIHVEVRKD  136 (144)
T ss_dssp             SSSSEEEEEEEETT
T ss_pred             cCcCEEEEEEEECC
Confidence            99999999999986

The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....

>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

Probab=99.54  E-value=6.5e-14  Score=127.53  Aligned_cols=133  Identities=23%  Similarity=0.339  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCC
Q 018180          206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTS  285 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~  285 (359)
                      +.+.+...||..+-.  ...-....+|+.|+++++..     .+...++..         ......+.|++|+...|.++
T Consensus        11 ~~e~~~~~ei~~~~~--~~~~~~~~~g~~gvliv~~~-----~d~~~~~~~---------~~~~~~~~rv~pv~~~~~~d   74 (175)
T COG1818          11 GFERQAREEIKEIIG--DLEAEPRPTGFPGVLIVESE-----LDEEEALEK---------LKEVPEVERVIPVEIEVETD   74 (175)
T ss_pred             CccHHHHHHHHhhcc--cccccccccCCceEEEEEcc-----CcHHHHHHH---------hcCCCceeeEEEEEeeccCC
Confidence            456667777777765  23446789999999999874     233322221         23678999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEecc
Q 018180          286 EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       286 leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViKn  358 (359)
                      +++|..+|..++..+..    .+.||||++++|+.+.|++.++.-.++..|..  +..|||++||++|.|||+++
T Consensus        75 ldeI~~~~~~l~~~~i~----~~~tFaVr~~rRG~~~f~s~~~~v~vg~~v~~~tg~~VdL~~Pd~vv~Vevl~~  145 (175)
T COG1818          75 LDEIEEAAAELAEEKIK----EGKTFAVRTKRRGKHDFTSRDVEVVVGEAVKKATGAEVDLEDPDKVVWVEVLGD  145 (175)
T ss_pred             HHHHHHHHHHHHhcccC----CCCeEEEEEeecCCCCccccceeehhHHHHHHHhCCcccCCCCCEEEEEEEecC
Confidence            99999999999998776    47899999999999999999999999999975  89999999999999999986

>PRK01565 thiamine biosynthesis protein ThiI; Provisional

Probab=99.08  E-value=1.1e-09  Score=109.70  Aligned_cols=107  Identities=20%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEE
Q 018180          234 NGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAV  313 (359)
Q Consensus       234 kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI  313 (359)
                      .+-+||.+..    .++.++...+         .++-.|.++.|+. .|.+++++|.+++..++..+..    ...||+|
T Consensus        46 ~~r~~v~~~~----~~~~~~~~~l---------~~vfGI~~~s~~~-~~~~~~e~I~~~~~~~~~~~~~----~~~tF~V  107 (394)
T PRK01565         46 RDRMYIELNG----EDYEEVIERL---------KKVFGIQSFSPVY-KVEKDLEAIKEAALELLKEVYK----EGKTFKV  107 (394)
T ss_pred             CCEEEEEeCC----cCHHHHHHHH---------hhCCCcceEEEEE-EECCCHHHHHHHHHHHHHhhcc----CCCcEEE
Confidence            3678887632    3455554433         3688999999997 5889999999999999987643    3579999


Q ss_pred             EEEecCCC-CCCHHHHHHHHHhcCCC---CCcccCCCCCeEEEEEEecc
Q 018180          314 LYEARANS-GIDRMKIINAVAKSVPA---PHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       314 ~~krRnns-~LsRdeVI~~VA~lV~~---~hKVDLkNPD~tIlVEViKn  358 (359)
                      +.+|++++ .++|++|.+.||+.|..   +.+|||+|||++|.|||.++
T Consensus       108 r~rR~~k~f~~tS~ei~r~vG~~I~~~~~~~~VdL~nPd~~i~vei~~~  156 (394)
T PRK01565        108 EARRSDKSFPLDSMELNRELGAYILENFPNLKVDVKNPDVTLRVEVRKE  156 (394)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHHHhhCCCCcccccCCCeEEEEEEEcC
Confidence            99999988 99999999999999864   48999999999999999875

>PRK08384 thiamine biosynthesis protein ThiI; Provisional

Probab=98.88  E-value=2.2e-08  Score=100.88  Aligned_cols=90  Identities=19%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCC-CCCCHHHHHHHHHhcCCC--CCcccC
Q 018180          268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARAN-SGIDRMKIINAVAKSVPA--PHKVDL  344 (359)
Q Consensus       268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnn-s~LsRdeVI~~VA~lV~~--~hKVDL  344 (359)
                      +.-.|..+.|+ ..|..++++|.++|..++..++......+.||+|+++|++. ..++|++|.+.||+.|..  +.+|||
T Consensus        68 ~vfGI~~~s~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~tF~V~~rR~~k~f~~tS~ei~~~vG~~i~~~~~~~Vdl  146 (381)
T PRK08384         68 RVFGIVSLSPA-MEIDAELEKINRTALKLFRRKKRELELEKPRFRVTARRITKEFPLKSPEIQAKVGEYILENEESEVDL  146 (381)
T ss_pred             hCCCceeEEEE-EEeCCCHHHHHHHHHHHHHHhhhcccccCCeEEEEEEeCCCCCCCChHHHHHHHHHHHHhcCCCCccC
Confidence            57789999998 45778999999999999988753211134699999999996 599999999999999843  589999


Q ss_pred             CCCCeEEEEEEecc
Q 018180          345 SNPDKTIVVEIVKD  358 (359)
Q Consensus       345 kNPD~tIlVEViKn  358 (359)
                      +|||++|.|||.++
T Consensus       147 ~~Pd~~i~vEir~~  160 (381)
T PRK08384        147 HNYDIEVGVELMEG  160 (381)
T ss_pred             cCCCEEEEEEEEeC
Confidence            99999999999765

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=98.85  E-value=3.7e-08  Score=101.31  Aligned_cols=87  Identities=23%  Similarity=0.281  Sum_probs=78.0

Q ss_pred             CcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCccc
Q 018180          267 PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVD  343 (359)
Q Consensus       267 ~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVD  343 (359)
                      .+.-.|.+++|+..++..++++|.+.|..++..++.     ..||+|+.+|++++.+++++|...||+.|.   .+.+||
T Consensus        68 ~~vfGi~~~~~v~~~~~~~~e~I~~~a~~~~~~~~~-----~~tF~VrarR~~k~~~~S~ei~r~vG~~I~~~~~~~~Vd  142 (482)
T PRK01269         68 TRIPGIHHFLEVEEYPFTDLHDIFEKALALYREQLE-----GKTFCVRVKRRGKHDFTSIDVERYVGGGLNQHIESAGVD  142 (482)
T ss_pred             hcCCCceEEEEEEEECCCCHHHHHHHHHHHHHHhcC-----CCeEEEEEEeCCCCCCChHHHHHHHHHHHHHhCCCCcee
Confidence            368899999999888878999999999999998864     459999999999889999999999999993   258999


Q ss_pred             CCCCCeEEEEEEecc
Q 018180          344 LSNPDKTIVVEIVKD  358 (359)
Q Consensus       344 LkNPD~tIlVEViKn  358 (359)
                      |+|||++|.|||.++
T Consensus       143 L~nPD~~i~VeI~~d  157 (482)
T PRK01269        143 LKNPDVTVHLEIRDD  157 (482)
T ss_pred             CCCCCEEEEEEEECC
Confidence            999999999999875

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI

Probab=98.77  E-value=7.5e-08  Score=96.02  Aligned_cols=86  Identities=24%  Similarity=0.332  Sum_probs=73.3

Q ss_pred             CcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC--CCccc
Q 018180          267 PISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA--PHKVD  343 (359)
Q Consensus       267 ~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~--~hKVD  343 (359)
                      .+.-.|..+.|+ ..|.+++++|. .+..++..+...    ..||+|+.+|++++ ++++++|.+.||+.|..  +.+||
T Consensus        64 ~~vfGi~~~s~~-~~~~~~~~~i~-~~~~~~~~~~~~----~~tF~Vr~kR~~k~f~~~S~ei~r~~G~~i~~~~~~~Vd  137 (371)
T TIGR00342        64 TKIPGIVSFSPA-FKCDLPFDEIH-ILLKALKQLRKE----GKTFKVRTKRRGKDFPLNSVEVNKYVGGGIVEKIGLKVD  137 (371)
T ss_pred             hcCCCccEEEEE-EEECCCHHHHH-HHHHHHHHhhcc----CCcEEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCccc
Confidence            367889999998 57788999999 888888876532    46999999999864 67799999999999953  58999


Q ss_pred             CCCCCeEEEEEEecc
Q 018180          344 LSNPDKTIVVEIVKD  358 (359)
Q Consensus       344 LkNPD~tIlVEViKn  358 (359)
                      |+|||++|.|||.++
T Consensus       138 L~nPd~~i~vei~~~  152 (371)
T TIGR00342       138 LTNPDITVHIEIRED  152 (371)
T ss_pred             ccCCCEEEEEEEECC
Confidence            999999999999875

The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]

Probab=98.66  E-value=1.5e-07  Score=95.01  Aligned_cols=86  Identities=23%  Similarity=0.278  Sum_probs=74.8

Q ss_pred             cccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCC-CCCCHHHHHHHHHhcCCC---CCccc
Q 018180          268 ISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARAN-SGIDRMKIINAVAKSVPA---PHKVD  343 (359)
Q Consensus       268 ~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnn-s~LsRdeVI~~VA~lV~~---~hKVD  343 (359)
                      +.-.|+.+.|+ ..|..+++++...+..++.....    .+.||+|+.+|+++ +.|++.+|.+.||+.|-.   ..+||
T Consensus        66 ~vfGI~s~sp~-~~v~~~~~~i~~~~~~~~~~~~~----~g~tF~V~arR~~k~f~~~S~ev~~~vG~~i~~~~~~~~Vd  140 (383)
T COG0301          66 RVFGIVSFSPA-MEVEASLEEIIKAALLALRRKYK----EGKTFKVRARRAGKEFPFTSLEVNRYVGEAILENIESAGVD  140 (383)
T ss_pred             hcCCcceecee-EEecCCcHHHHHHHHHHHHHhhh----cCCeEEEEEEeCCCCCCCCHHHHHHHHHHHHHhhcccceee
Confidence            67789999999 77888888888888888877654    36699999999998 899999999999998853   69999


Q ss_pred             CCCCCeEEEEEEecc
Q 018180          344 LSNPDKTIVVEIVKD  358 (359)
Q Consensus       344 LkNPD~tIlVEViKn  358 (359)
                      |+|||++|.|||..+
T Consensus       141 l~~Pdv~i~iEIr~~  155 (383)
T COG0301         141 LKNPDVEIHIEIRED  155 (383)
T ss_pred             cCCCCeEEEEEEecC
Confidence            999999999999754

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.70  E-value=0.018  Score=58.77  Aligned_cols=128  Identities=26%  Similarity=0.344  Sum_probs=90.2

Q ss_pred             cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180          205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT  284 (359)
Q Consensus       205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A  284 (359)
                      ..+|+.+.+||.+|+-...     ...-..+|.|- -     +   .+++.++.        .-+|-+.|+.=+-..|++
T Consensus        11 ~GLE~~~~~El~~lg~~e~-----~~~~~ggV~f~-g-----d---~~~~~~~n--------lwsRta~Ri~i~l~~fk~   68 (381)
T COG0116          11 RGLEDLLARELEELGAEEV-----AKVVNGGVHFE-G-----D---VELIYRAN--------LWSRTASRILLPLGEFKA   68 (381)
T ss_pred             CcHHHHHHHHHHhcCceec-----cceeeccEEEe-c-----c---HHHHHHHh--------HHHHHHHhhheeeeeeee
Confidence            4689999999988875421     01112344443 1     1   22222221        245566676655577774


Q ss_pred             -CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180          285 -SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE  354 (359)
Q Consensus       285 -~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE  354 (359)
                       +.++|-..+..+ +..||+.    ..||+|++++-+.+..++.++-..|.++|-        ..-.|||..||+.|-|+
T Consensus        69 ~~~~dly~~v~~i~w~~~~~~----~~tf~V~~~~~~~~~~~s~~~a~~vkdAIvd~~~~~~~~r~~v~~~~Pdv~i~v~  144 (381)
T COG0116          69 ETLDDLYEAVKAINWEEYFPE----GATFAVRFRGVGSHLFTSPDIARIVKDAIVDRFRRKYGRRPSVDLDGPDVRINVE  144 (381)
T ss_pred             CCHHHHHHHhhcCCHHHhCCC----CCEEEEEEEeccCCccccHHHHHHHHHHHHHHHhhccCCCCCccccCCCeEEEEE
Confidence             688998888877 7778874    569999988888889999999999988873        13389999999999999


Q ss_pred             Eecc
Q 018180          355 IVKD  358 (359)
Q Consensus       355 ViKn  358 (359)
                      +.++
T Consensus       145 l~~~  148 (381)
T COG0116         145 LDKD  148 (381)
T ss_pred             EEcC
Confidence            9886

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.81  E-value=0.16  Score=55.21  Aligned_cols=127  Identities=19%  Similarity=0.246  Sum_probs=74.5

Q ss_pred             cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEee-
Q 018180          205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACY-  283 (359)
Q Consensus       205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~-  283 (359)
                      ..+|+.|++||.+|+-..      +..+-.||.| ..       ++..+..-.+         .+|.+.|++=+-..+. 
T Consensus        10 ~GlE~~l~~El~~lg~~~------~~~~~ggV~f-~g-------~~~~~~~~nl---------~~R~A~RVll~l~~f~a   66 (702)
T PRK11783         10 KGLEELLKDELEALGASE------CKVVQGGVHF-EG-------DLELAYRSCL---------WSRLASRILLPLAEFKV   66 (702)
T ss_pred             ccHHHHHHHHHHhcCCcc------cEEEcCEEEE-Ee-------CHHHHHHHHH---------HhcchhheEEEeeeeec
Confidence            357999999999998541      2223334444 32       2344332211         2344444333323333 


Q ss_pred             CCHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCC----HHHHHHHHHhcC----CCCCcccCCCCCeEEEEE
Q 018180          284 TSEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGID----RMKIINAVAKSV----PAPHKVDLSNPDKTIVVE  354 (359)
Q Consensus       284 A~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~Ls----RdeVI~~VA~lV----~~~hKVDLkNPD~tIlVE  354 (359)
                      .+.++|...++.+ +..||+.    ..||+|++..++..-.+    ...|-++|.+.+    ...-+||+.+|++.|.|-
T Consensus        67 ~~~~~Ly~~v~~i~W~~~l~~----~~tf~V~~~~~~s~l~~~~~~~~~vKdAI~d~~~~~~~~rp~vd~~~pdv~i~~~  142 (702)
T PRK11783         67 YSDLDLYLGVQAIDWTEHFSP----DKTFAVDFSGTNDEIRNTQFGALKVKDAIVDRFRRKGGPRPSVDKEQPDIRINAR  142 (702)
T ss_pred             CCHHHHHHHHHcCCHHHhCCC----CCeEEEEEEEecCCccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEE
Confidence            3788888888775 4446663    45999999877643222    223333333333    223479999999999999


Q ss_pred             Eecc
Q 018180          355 IVKD  358 (359)
Q Consensus       355 ViKn  358 (359)
                      +.++
T Consensus       143 ~~~~  146 (702)
T PRK11783        143 LNKG  146 (702)
T ss_pred             EeCC
Confidence            8764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=95.51  E-value=0.041  Score=53.92  Aligned_cols=72  Identities=18%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             EeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC-CCcccCCCCCeEEEEEEec
Q 018180          281 ACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA-PHKVDLSNPDKTIVVEIVK  357 (359)
Q Consensus       281 tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~-~hKVDLkNPD~tIlVEViK  357 (359)
                      .|..+.++|.+.+..+--..+.     ..||+|++++++++.+++..+.+.|++.+.. +.+|||+|||++|.|.+..
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~~-----~~sf~v~~~~~~~~~~~~~~~~~~ig~~i~~~g~~v~l~~Pd~~i~v~~~~  133 (329)
T TIGR01177        61 YDTCAAKDLYDFVAGLEASDLD-----RKSFAVRVRDLRGYSVDKARLERKIGAILKKKGFKVSLRRPDIVVRVVITE  133 (329)
T ss_pred             hcCCCHHHHHHHHhhcchhhcc-----CCeEEEEEEecCCCCCCHHHHHHHHHHHHHhcCCccccCCCCeEEEEEEEC
Confidence            4445677888777764333222     2599999999887788898888889888853 3599999999999987654

This family is found exclusively in the Archaea.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2dir_A	98	Solution Structure Of The Thump Domain Of Thump Dom		4e-04

>pdb|2DIR|A Chain A, Solution Structure Of The Thump Domain Of Thump Domain- Containing Protein 1 Length = 98

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 40/57 (70%), Gaps = 5/57 (8%)
Query: 306 QSPQK--FAVLYEARANSGIDRMKIINAVAK---SVPAPHKVDLSNPDKTIVVEIVK 357
           ++P K  F ++Y++R NS ++R ++I  +A    ++ + +KVDL+NP  T+VVEI+K
Sbjct: 27  KAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIK 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
2dir_A	98	Thump domain-containing protein 1; structural geno	1e-22

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3 Length = 98

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 282 CYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---A 338
                E++ +  +  +  +F     +   F ++Y++R NS ++R ++I  +A  V    +
Sbjct: 7   GKAFLEDMKKYAETFLEPWFKAP--NKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNS 64

Query: 339 PHKVDLSNPDKTIVVEIVKDY 359
            +KVDL+NP  T+VVEI+K  
Sbjct: 65  ENKVDLTNPQYTVVVEIIKAV 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
2dir_A	98	Thump domain-containing protein 1; structural geno	99.6
2c5s_A	413	THII, probable thiamine biosynthesis protein THII;	99.08
1vbk_A	307	Hypothetical protein PH1313; structural genomics,	99.06
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.91
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.86
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.59
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.55
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.54
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.28

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3

Probab=99.60  E-value=5.6e-16  Score=125.72  Aligned_cols=78  Identities=29%  Similarity=0.491  Sum_probs=70.6

Q ss_pred             eEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEE
Q 018180          279 ELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEI  355 (359)
Q Consensus       279 q~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEV  355 (359)
                      ..+|.+++++|.++|..++.++|+..  .+.||+|+++||+++.|+|++|++.||+.|.   ++++|||+|||++|.|||
T Consensus         4 ~~~~~~~~e~I~~~a~~~~~~~f~~~--~~~TF~V~~kR~~k~~~~S~ei~~~vG~~i~~~~~~~kVdL~nPd~~I~VEI   81 (98)
T 2dir_A            4 GSSGKAFLEDMKKYAETFLEPWFKAP--NKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEI   81 (98)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHSTT--CCCEEEEEEECSSCCSSCHHHHHHHHHHHHHHHCTTCEECSSSCSEEEEEEE
T ss_pred             eEEEECCHHHHHHHHHHHHHHhcCcC--CCceEEEEEEeCCCCCCCHHHHHHHHHHHHHhhCCCCeeEcCCCCEEEEEEE
Confidence            37899999999999999999998532  3579999999999999999999999999995   379999999999999999


Q ss_pred             ecc
Q 018180          356 VKD  358 (359)
Q Consensus       356 iKn  358 (359)
                      +++
T Consensus        82 ~~~   84 (98)
T 2dir_A           82 IKA   84 (98)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            986

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1

Probab=99.08  E-value=2.6e-09  Score=105.83  Aligned_cols=132  Identities=13%  Similarity=0.102  Sum_probs=101.1

Q ss_pred             CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCC
Q 018180          206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTS  285 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~  285 (359)
                      ..+.+|..-|...-..- ..+...  ...|.+||.+..    .++.+++.++         .++..|.++.|+.. |..+
T Consensus        32 ~f~~~L~~ni~~~l~~~-~~~~v~--~~~gri~v~~~~----~~~~~~~~~L---------~~vfGI~~~~~v~~-~~~d   94 (413)
T 2c5s_A           32 KFVSTLKDNVKFKLKKF-PNIKID--ATHDRMYIQLNG----EDHEAVSERL---------KDVFGIHKFNLAMK-VPSE   94 (413)
T ss_dssp             HHHHHHHHHHHHHTTTS-TTCEEE--ECSSCEEEECTT----CCHHHHHHHH---------TTCTTEEEEEEEEE-EESS
T ss_pred             HHHHHHHHHHHHHHhhc-CceEEE--EECCEEEEEeCC----CCHHHHHHHH---------hhCCCeEEEEEEEE-ecCC
Confidence            46777777766543321 123322  224788887642    3566665555         36889999999955 6799


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCC-CCCHHHHHHHHHhcCCC---CCcccCCCCCeEEEEEEecc
Q 018180          286 EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANS-GIDRMKIINAVAKSVPA---PHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       286 leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns-~LsRdeVI~~VA~lV~~---~hKVDLkNPD~tIlVEViKn  358 (359)
                      +++|.++|..++..++.    .+.||+|+.+|++.+ .++|++|.+.||+.|..   +.+|||+|||++|.|||.++
T Consensus        95 le~I~~~~~~~~~~~~~----~~~tF~V~~kR~~k~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~~  167 (413)
T 2c5s_A           95 LEDIKKGALAAFLQVKG----DVKTFKITVHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSG  167 (413)
T ss_dssp             HHHHHHHHHHHHHTCCS----CCCEEEEEEEECCTTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHhhcc----CCCcEEEEEEECCCCCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEec
Confidence            99999999999987653    356999999999987 99999999999999853   57999999999999999875

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1

Probab=99.06  E-value=6.9e-10  Score=106.35  Aligned_cols=131  Identities=21%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHhccccCCceEE-ccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180          206 SIDKLIEAELKELGDKNKRRFIN-LDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT  284 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~-v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A  284 (359)
                      ..|++|...|...-..  ..+.. --....|-+||..      .++.++++++         .++..|.++.|+.. |..
T Consensus        21 ~Fe~~L~~nI~~~L~~--~~~~~~~v~~~~gri~V~~------~~~~~~~~~L---------~~vfGI~~~s~v~~-~~~   82 (307)
T 1vbk_A           21 WFEKILMNNIREALVT--EEVPYKEIFSRHGRIIVKT------NSPKEAANVL---------VRVFGIVSISPAME-VEA   82 (307)
T ss_dssp             HHHHHHHHHHHHHHHH--TTCCCSEEEEETTEEEEEC------SCHHHHHHHH---------TTSTTEEEEEEEEE-EEC
T ss_pred             HHHHHHHHHHHHHhcc--cCccceeEEEECCEEEEEc------CCHHHHHHHH---------hhcCCeEEEEEEEE-eCC
Confidence            3777887777654332  12220 0113457788862      2577766665         36789999999965 679


Q ss_pred             CHHHHHHHHHHHHHhhCCCCCCC-Cc---eEEEEEEecC-CCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEec
Q 018180          285 SEEEISRAIKPLVAQYFPLETQS-PQ---KFAVLYEARA-NSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVK  357 (359)
Q Consensus       285 ~leeI~k~ak~Ll~k~F~~e~~~-~~---TFAI~~krRn-ns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViK  357 (359)
                      ++++|.+.+..++..++.    + +.   ||+|+.+|++ ++.++|++|.+.||+.|..  +.+|||+|||++|.|||.+
T Consensus        83 dle~I~~~~~~~~~~~~~----~~~~~~~tF~Vr~kR~~k~~~~~S~ei~r~vG~~i~~~~~~~Vdl~~PD~~i~VEi~~  158 (307)
T 1vbk_A           83 SLEKINRTALLMFRKKAK----EVGKERPKFRVTARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQ  158 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHH----HHTCSSCEEEEEEEESSSCSSSCHHHHHHHHHHHHHHHSSCEECSSSCSEEEEEEEET
T ss_pred             CHHHHHHHHHHHHHHhhc----ccCCCCceEEEEEEeCCCCCCCChHHHHHHHHHHHHHHhCCceeeeCCCEEEEEEEEc
Confidence            999999999999887531    1 23   9999999999 7799999999999999853  5899999999999999987


Q ss_pred             c
Q 018180          358 D  358 (359)
Q Consensus       358 n  358 (359)
                      +
T Consensus       159 ~  159 (307)
T 1vbk_A          159 G  159 (307)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.91  E-value=5.4e-05  Score=74.49  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             cCHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC
Q 018180          205 QSIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT  284 (359)
Q Consensus       205 ~DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A  284 (359)
                      ..+|..|++||.+|+-    ...   ..-.+|.| ..       +...+....+         .+|-..|++-+-..+.+
T Consensus        23 ~GlE~~la~El~~lG~----~v~---~~~g~V~f-~g-------~~~~~~r~~l---------~~R~a~RVl~~l~~f~a   78 (393)
T 3k0b_A           23 SGLEAIVGKEVARLGY----DPK---VENGKVYF-EG-------DLSAIARANL---------WLRVADRVKIVVGVFKA   78 (393)
T ss_dssp             TTCHHHHHHHHHHTTC----CCE---EETTEEEE-EE-------CHHHHHHHHH---------HCSSCSCEEEEEEEEEC
T ss_pred             ccHHHHHHHHHHhCCC----CcE---EeccEEEE-EE-------CHHHHHHHHh---------cccceeeEEEEEEEEec
Confidence            3578999999999974    122   22244444 43       2233333222         36777777766667765


Q ss_pred             -CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180          285 -SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE  354 (359)
Q Consensus       285 -~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE  354 (359)
                       +.++|.+.+..+ +..||+.    ..||+|+.++++++.+++.++...|..+|-        ..-.||+++||+.|.|.
T Consensus        79 ~~~~~L~~~~~~i~w~~~l~~----~~tF~V~~~~~~s~~fss~~~~~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~  154 (393)
T 3k0b_A           79 TTFDELFEKTKALPWEDYLPL----DAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVS  154 (393)
T ss_dssp             SSHHHHHHHHHTSCGGGTCCT----TCBCCEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEE
T ss_pred             CCHHHHHHHHHhCCHHHhCCC----CCeEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEE
Confidence             799999999998 6788863    569999999999999999888888877762        12379999999999999


Q ss_pred             Eecc
Q 018180          355 IVKD  358 (359)
Q Consensus       355 ViKn  358 (359)
                      +.++
T Consensus       155 l~~~  158 (393)
T 3k0b_A          155 ILKD  158 (393)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            8765

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.86  E-value=1.4e-05  Score=75.95  Aligned_cols=126  Identities=13%  Similarity=0.091  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHH-hccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEe--
Q 018180          206 SIDKLIEAELKE-LGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELAC--  282 (359)
Q Consensus       206 DIE~~I~kELae-LK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC--  282 (359)
                      .+|..|++||.+ |+..   ...  .....|-|++.+..     ++..+             .++|.+.|++-+-..+  
T Consensus        29 GlE~~l~~El~~~lg~~---~~~--~~~~~g~v~~~~~~-----~~~~~-------------~~lR~a~rvl~~~~~~~~   85 (354)
T 3tma_A           29 GLEDLLLEELSALYPGE---GAE--VDARKGRVRIPRAW-----VGEEA-------------LGLRLAHHLVLFRARLLL   85 (354)
T ss_dssp             TCHHHHHHHHHHHSCSS---CCE--EETTTTEEEEECSC-----CCGGG-------------GGCSSCSCEEEEEEEEEC
T ss_pred             cHHHHHHHHHHHHcCCc---cce--eeecCCEEEEEecC-----CHHHH-------------HhcCCccEEEEEeeeccC
Confidence            679999999999 8754   111  12234566666532     22221             2478888887776666  


Q ss_pred             e-CC-HHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC--CCcccCCCCCeEEEEEEecc
Q 018180          283 Y-TS-EEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA--PHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       283 ~-A~-leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~--~hKVDLkNPD~tIlVEViKn  358 (359)
                      . .+ +++|.+.+..+--..++    ...||+|++++.+++.+++.+|.+.|+..+..  +.+|||++||+.|.|.+.++
T Consensus        86 ~~~~~~~~L~~~~~~~~w~~~~----~~~tF~V~~~~~~~~~f~s~~vk~~i~~~l~~~~g~~v~~~~pd~~i~v~i~~d  161 (354)
T 3tma_A           86 SREDPLGALERAALALPWPELE----GAGSFRVEARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGE  161 (354)
T ss_dssp             CSSSHHHHHHHHHHTSCCTTHH----HHCCEEEEEEEESCCSSCHHHHHHHHHHHHHHHHCCCBCSSSCSEEEEEEEETT
T ss_pred             CchhhHHHHHHHHHhCchhhcC----CCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCcccCCCCCEEEEEEEECC
Confidence            4 36 88998888765211111    24699999999998899999999999998753  56799999999999998764

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.59  E-value=0.00028  Score=68.21  Aligned_cols=140  Identities=21%  Similarity=0.239  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHHhccccCC--ceEEccCCCCeEEEEEeccC---C--CCC-CHHHHHHHHHHHHhhcCCCcccceEEeee
Q 018180          206 SIDKLIEAELKELGDKNKR--RFINLDSGCNGVAVVQMRKI---D--GDP-SPKDIVQHMMTSVASTRKPISRSILRVLP  277 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkr--rF~~v~TG~kGvVFIrtr~~---d--~di-DPveLV~~I~ed~~~tk~~~TRfI~RLiP  277 (359)
                      .+|+.|++||.+|.....-  ....+..+.+|-|++.....   +  .-. +-..+ .+++        ..+|...|++-
T Consensus        10 GlE~~l~~El~~lg~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~R~a~rv~~   80 (373)
T 3tm4_A           10 GIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYVDEKGRKRELSIS-TYLN--------ENSRLLHRVII   80 (373)
T ss_dssp             TCHHHHHHHHHHHHHTTTCCEEEEESGGGCTTEEEEEECCEEEECTTSCEEEECHH-HHHH--------HHCSSCSEEEE
T ss_pred             chHHHHHHHHHHhhccccccccceeccccccceEEEEEecccccccccccCCHHHH-HHHH--------HhhhhHhheEE
Confidence            5789999999999863111  22334554566666655100   0  000 11122 2221        14788999988


Q ss_pred             eeEEeeC----------CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCCC-----C-C
Q 018180          278 IELACYT----------SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA-----P-H  340 (359)
Q Consensus       278 Iq~tC~A----------~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~~-----~-h  340 (359)
                      +-..+.+          +.++|.+.+..+ +..||+.    ..||+|++++.+++.+++.++...|+..|-.     + .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~w~~~l~~----~~tF~V~~~~~~~~~~~s~~~~~~vk~aIvd~~~~~g~~  156 (373)
T 3tm4_A           81 EIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFVKV----SETFAVRSFRKGDHNITSIDIARTVGEAIFERLSRFGTP  156 (373)
T ss_dssp             EEEEEECTTTTTSCHHHHHHHHHHHHHTSCGGGGSCT----TSEEEEEEEEESSCSSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             EEEEeEeccccccccCCCHHHHHHHHHhCCHHHhCCC----CCcEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            8777765          477888887775 4567763    5699999999988889998888888776631     1 5


Q ss_pred             cccCCCCCeEEEEEEecc
Q 018180          341 KVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       341 KVDLkNPD~tIlVEViKn  358 (359)
                      .|||.+||+.|.|.+.++
T Consensus       157 ~v~~~~p~~~i~~~~~~d  174 (373)
T 3tm4_A          157 LVNLDHPAVIFRAELIKD  174 (373)
T ss_dssp             EECSSSCSEEEEEEEETT
T ss_pred             cccCCCCCeEEEEEEECC
Confidence            899999999999988764

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.55  E-value=0.0004  Score=68.24  Aligned_cols=125  Identities=20%  Similarity=0.244  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180          206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT-  284 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A-  284 (359)
                      .+|+.|++||.+|+-    ..+   ..-.+|.| ..       +...+....+         -+|-..|++-+-..+.+ 
T Consensus        14 GlE~~la~El~~lG~----~~~---~~~g~V~f-~g-------d~~~~~~~~l---------~~R~a~RVl~~l~~f~a~   69 (384)
T 3ldg_A           14 GIEAVVGKELRNLGL----DCQ---VENGRVLF-KG-------NIETIAKSNL---------WLRSADRIKIVVGEFPAR   69 (384)
T ss_dssp             TCHHHHHHHHHHTTC----CCE---EETTEEEE-EE-------CHHHHHHHHH---------HCSSCSEEEEEEEEEECS
T ss_pred             hHHHHHHHHHHhCCC----CcE---EeeeEEEE-EE-------CHHHHHHHHh---------hcccceeEEEEEEEEecC
Confidence            578999999999975    122   22234444 43       2233332222         46778888877777776 


Q ss_pred             CHHHHHHHHHHH-HHhhCCCCCCCCceEEE-EEEecCCCCCCHHHHHHHHHhcCC--------CCCc--ccCCCCCeEEE
Q 018180          285 SEEEISRAIKPL-VAQYFPLETQSPQKFAV-LYEARANSGIDRMKIINAVAKSVP--------APHK--VDLSNPDKTIV  352 (359)
Q Consensus       285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI-~~krRnns~LsRdeVI~~VA~lV~--------~~hK--VDLkNPD~tIl  352 (359)
                      +.++|-+.++.+ +..||+.    ..||+| +.++.+++.+++.++...|..+|-        ..-.  ||+++||+.|.
T Consensus        70 ~~~~Ly~~~~~i~W~~~l~~----~~tf~V~~~~~~~s~~~~s~~~~~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~  145 (384)
T 3ldg_A           70 TFEELFQGVYALDWENYLPL----GCQFPVAKAKSVKSKLHNEPSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIE  145 (384)
T ss_dssp             SHHHHHHHHHHSCGGGTCCT----TCBCCBCCCEEESCSCCCHHHHHHHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEE
T ss_pred             CHHHHHHHHHcCCHHHhCCC----CCeEEEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCccccCCCCCCEEEE
Confidence            799999999998 6788874    569999 888888888998888777766652        1122  99999999999


Q ss_pred             EEEecc
Q 018180          353 VEIVKD  358 (359)
Q Consensus       353 VEViKn  358 (359)
                      |.+.++
T Consensus       146 v~~~~~  151 (384)
T 3ldg_A          146 ISLLKD  151 (384)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            998775

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.54  E-value=0.00033  Score=68.52  Aligned_cols=126  Identities=17%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180          206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT-  284 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A-  284 (359)
                      .+|..|++||.+|+-.      .+...-.+|.| ...       ...+....+         -+|-..|++=+-..+.+ 
T Consensus        16 GlE~~l~~El~~Lg~~------~~~~~~g~V~f-~g~-------~~~~~~~~l---------~~R~a~RVl~~l~~f~~~   72 (385)
T 3ldu_A           16 GMEKMLAREITNLGYE------IIKTEDGRITY-KTD-------EFGIAKSNM---------WLRCAERVHLKIAEFEAK   72 (385)
T ss_dssp             TCHHHHHHHHHHTTCE------EEEEETTEEEE-EEC-------TTHHHHHHH---------HCSSCSCCEEEEEEEECS
T ss_pred             hHHHHHHHHHHhcCCC------ceEEeccEEEE-EEC-------HHHHHHHHh---------ccCceeEEEEEeeeEecC
Confidence            5789999999999853      23333345555 331       122222222         35666666655566665 


Q ss_pred             CHHHHHHHHHHH-HHhhCCCCCCCCceEEEE-EEecCCCCCCHHHHHHHHHhcCC--------CCCcccCCCCCeEEEEE
Q 018180          285 SEEEISRAIKPL-VAQYFPLETQSPQKFAVL-YEARANSGIDRMKIINAVAKSVP--------APHKVDLSNPDKTIVVE  354 (359)
Q Consensus       285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~-~krRnns~LsRdeVI~~VA~lV~--------~~hKVDLkNPD~tIlVE  354 (359)
                      +.++|-+.+..+ +..||+.    ..||+|+ .++++++.+++.++...|..+|-        ..-.||+.+||+.|.|.
T Consensus        73 ~~~~L~~~~~~i~w~~~~~~----~~tf~V~~~~~~~s~~~~~~~~~~~vkdAIvd~~~~~~~~rp~v~~~~p~~~i~~~  148 (385)
T 3ldu_A           73 SFDELFENTKRINWSRYIPY----GAQFPISKASSIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVF  148 (385)
T ss_dssp             SHHHHHHHHHTSCGGGTSCT----TCBCCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTTCCSCCCCCSCBCCEEEE
T ss_pred             CHHHHHHHHHhCCHHHhCCC----CceEEEEeecccCCCcCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEE
Confidence            799999999987 6788874    5699999 88889888999888877776652        12479999999999999


Q ss_pred             Eecc
Q 018180          355 IVKD  358 (359)
Q Consensus       355 ViKn  358 (359)
                      |.++
T Consensus       149 i~~~  152 (385)
T 3ldu_A          149 IHKD  152 (385)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            8765

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.28  E-value=0.0023  Score=67.49  Aligned_cols=126  Identities=20%  Similarity=0.258  Sum_probs=86.2

Q ss_pred             CHHHHHHHHHHHhccccCCceEEccCCCCeEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeC-
Q 018180          206 SIDKLIEAELKELGDKNKRRFINLDSGCNGVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYT-  284 (359)
Q Consensus       206 DIE~~I~kELaeLK~kKkrrF~~v~TG~kGvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A-  284 (359)
                      .+|..|++||.+|+-.      .+...-.+|.| ..       +...+.+..+         -+|-..|++=+-..+.+ 
T Consensus        12 GlE~~l~~El~~lg~~------~~~~~~g~V~f-~g-------~~~~~~~~~l---------~~R~a~Rvl~~l~~f~~~   68 (703)
T 3v97_A           12 GLEELLKTELENLGAV------ECQVVQGGVHF-KG-------DTRLVYQSLM---------WSRLASRIMLPLGECKVY   68 (703)
T ss_dssp             TCHHHHHHHHHHTTCE------EEEEETTEEEE-EE-------CHHHHHHHHH---------HCSSCSEEEEEEEEEECS
T ss_pred             cHHHHHHHHHHhcCCc------ccEEECCEEEE-Ee-------CHHHHHHHHH---------hhCceeEEEEEEEEEecC
Confidence            4689999999999853      23344456655 32       2334333222         46777787776677775 


Q ss_pred             CHHHHHHHHHHH-HHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcC--------CCCCcccCCCCCeEEEEEE
Q 018180          285 SEEEISRAIKPL-VAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSV--------PAPHKVDLSNPDKTIVVEI  355 (359)
Q Consensus       285 ~leeI~k~ak~L-l~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV--------~~~hKVDLkNPD~tIlVEV  355 (359)
                      +.++|-+.++.+ +..||+.    ..||+|.+++++.+-.++..+...|..+|        +....||+++||+.|.|-+
T Consensus        69 ~~~~L~~~~~~~~w~~~~~~----~~tf~V~~~~~~~~~~~~~~~~~~vk~ai~d~~~~~~g~rp~v~~~~pd~~i~v~l  144 (703)
T 3v97_A           69 SDLDLYLGVQAINWTEMFNP----GATFAVHFSGLNDTIRNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWL  144 (703)
T ss_dssp             SHHHHHHHHHTSCHHHHBCT----TCCEEEEEECCCSSCCSHHHHHHHHHHHHHHHHHTTTCCCCCBCSSSCSEEEEEEE
T ss_pred             CHHHHHHHHHcCCHHHhCCC----CceEEEEEEEecCCcCChHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEE
Confidence            799999999998 7888874    56999999887755444554443333333        2234699999999999998


Q ss_pred             ecc
Q 018180          356 VKD  358 (359)
Q Consensus       356 iKn  358 (359)
                      .++
T Consensus       145 ~~~  147 (703)
T 3v97_A          145 HKE  147 (703)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d2dira1	85	d.308.1.3 (A:8-92) THUMP domain-containing protein	1e-13
d1vbka2	175	d.308.1.1 (A:1-175) Hypothetical protein PH1313, N	9e-08

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 285 SEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVPA---PHK 341
             E++ +  +  +  +F     +   F ++Y++R NS ++R ++I  +A  V      +K
Sbjct: 3   FLEDMKKYAETFLEPWFKAP--NKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENK 60

Query: 342 VDLSNPDKTIVVEIVKDY 359
           VDL+NP  T+VVEI+K  
Sbjct: 61  VDLTNPQYTVVVEIIKAV 78

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 175

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Hypothetical protein PH1313, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.1 bits (117), Expect = 9e-08
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 271 SILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYE-ARANSGIDRMKII 329
           SI   + +E     S E+I+R    +  +      +   KF V          +D ++I 
Sbjct: 73  SISPAMEVE----ASLEKINRTALLMFRKKAKEVGKERPKFRVTARRITKEFPLDSLEIQ 128

Query: 330 NAVAKSV--PAPHKVDLSNPDKTIVVEIVKDY 359
             V + +      +VDL N D  I +EI++  
Sbjct: 129 AKVGEYILNNENCEVDLKNYDIEIGIEIMQGK 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d2dira1	85	THUMP domain-containing protein 1 {Human (Homo sap	99.74
d1vbka2	175	Hypothetical protein PH1313, N-terminal domain {Ar	99.41
d2c5sa2	171	Thiamine biosynthesis protein ThiI, N-terminal dom	99.33

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-18  Score=137.73  Aligned_cols=75  Identities=31%  Similarity=0.523  Sum_probs=69.1

Q ss_pred             eCCHHHHHHHHHHHHHhhCCCCCCCCceEEEEEEecCCCCCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEEeccC
Q 018180          283 YTSEEEISRAIKPLVAQYFPLETQSPQKFAVLYEARANSGIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEIVKDY  359 (359)
Q Consensus       283 ~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~~krRnns~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEViKnv  359 (359)
                      +|++++|.+.|..|+++||+.  .++.||+|+++||+|+.|+|++|++.||++|.   ++|+|||+|||++|+|||++++
T Consensus         1 ~A~ledi~k~a~~l~~~~~~~--~~~~TF~V~~krr~~~~l~s~ev~~~vg~~v~~~~~~~~VdL~~Pd~~I~Vev~~~~   78 (85)
T d2dira1           1 KAFLEDMKKYAETFLEPWFKA--PNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAV   78 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHHST--TCCCEEEEEEECSSCCSSCHHHHHHHHHHHHHHHCTTCEECSSSCSEEEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEEeCCCCCCCHHHHHHHHHHHHHhhCCCceeeccCCCEEEEEEEeCCE
Confidence            478999999999999999985  35789999999999999999999999999995   4799999999999999999874

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Hypothetical protein PH1313, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=4.5e-13  Score=117.02  Aligned_cols=108  Identities=23%  Similarity=0.273  Sum_probs=87.9

Q ss_pred             eEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEE
Q 018180          235 GVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVL  314 (359)
Q Consensus       235 GvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~  314 (359)
                      +.++|...      +|.++.+.+         .+...|..+.|+ ..|..++++|.++|..++..++.....++.||+|+
T Consensus        49 ~ri~v~~~------~~~~~~~~L---------~~vfGI~~~s~v-~~ve~~le~I~~~a~~~~~~~~~~~~~~~~tF~V~  112 (175)
T d1vbka2          49 GRIIVKTN------SPKEAANVL---------VRVFGIVSISPA-MEVEASLEKINRTALLMFRKKAKEVGKERPKFRVT  112 (175)
T ss_dssp             TEEEEECS------CHHHHHHHH---------TTSTTEEEEEEE-EEEECCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CEEEEEcC------ChHHHHHHH---------HhCCCCCeEEEE-EEEcCCHHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence            45677652      455554443         367899999999 67899999999999999988764322346799999


Q ss_pred             EEecCC-CCCCHHHHHHHHHhcC--CCCCcccCCCCCeEEEEEEecc
Q 018180          315 YEARAN-SGIDRMKIINAVAKSV--PAPHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       315 ~krRnn-s~LsRdeVI~~VA~lV--~~~hKVDLkNPD~tIlVEViKn  358 (359)
                      ++|++. ..++|++|...||+.|  .++++|||+|||++|.|||.++
T Consensus       113 ~kR~~k~f~~tS~ei~~~vG~~i~~~~~~~VdL~nPd~~i~vEI~~~  159 (175)
T d1vbka2         113 ARRITKEFPLDSLEIQAKVGEYILNNENCEVDLKNYDIEIGIEIMQG  159 (175)
T ss_dssp             EEESSSCSSSCHHHHHHHHHHHHHHHSSCEECSSSCSEEEEEEEETT
T ss_pred             EEecCCCCCCChHHHHHHHHHHHhhcCCCeeeccCCCEEEEEEEEeC
Confidence            999985 4799999999999988  4589999999999999999875

>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Thiamine biosynthesis protein ThiI, N-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=99.33  E-value=7.9e-12  Score=109.10  Aligned_cols=106  Identities=14%  Similarity=0.165  Sum_probs=86.6

Q ss_pred             eEEEEEeccCCCCCCHHHHHHHHHHHHhhcCCCcccceEEeeeeeEEeeCCHHHHHHHHHHHHHhhCCCCCCCCceEEEE
Q 018180          235 GVAVVQMRKIDGDPSPKDIVQHMMTSVASTRKPISRSILRVLPIELACYTSEEEISRAIKPLVAQYFPLETQSPQKFAVL  314 (359)
Q Consensus       235 GvVFIrtr~~d~diDPveLV~~I~ed~~~tk~~~TRfI~RLiPIq~tC~A~leeI~k~ak~Ll~k~F~~e~~~~~TFAI~  314 (359)
                      +-++|.+..    .++.++.+.+         .++-.|.++.|+. .|..++++|.++|..++..+..    ++.||+|+
T Consensus        46 ~r~~v~~~~----~~~~~v~e~L---------~~vfGI~~~s~~~-~~~~dle~I~~~a~~~~~~~~~----~~~tF~Vr  107 (171)
T d2c5sa2          46 DRMYIQLNG----EDHEAVSERL---------KDVFGIHKFNLAM-KVPSELEDIKKGALAAFLQVKG----DVKTFKIT  107 (171)
T ss_dssp             SCEEEECTT----CCHHHHHHHH---------TTCTTEEEEEEEE-EEESSHHHHHHHHHHHHHTCCS----CCCEEEEE
T ss_pred             CEEEEEecC----CCHHHHHHHH---------ccCCCccEEEEEE-EeCCCHHHHHHHHHHHHHHhcc----CCceEEEE
Confidence            345666542    3566665554         3788999999996 5779999999999999876543    36799999


Q ss_pred             EEecCCC-CCCHHHHHHHHHhcCC---CCCcccCCCCCeEEEEEEecc
Q 018180          315 YEARANS-GIDRMKIINAVAKSVP---APHKVDLSNPDKTIVVEIVKD  358 (359)
Q Consensus       315 ~krRnns-~LsRdeVI~~VA~lV~---~~hKVDLkNPD~tIlVEViKn  358 (359)
                      ++|++++ .++|++|...||+.|-   ++++|||+|||++|.|||.++
T Consensus       108 ~kR~~k~f~~tS~ei~~~lG~~il~~~~~~kVdL~nPd~~i~veI~~~  155 (171)
T d2c5sa2         108 VHRSYKHFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRSG  155 (171)
T ss_dssp             EEECCTTCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECSS
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHhCCCCeeeccCCCEEEEEEEEcC
Confidence            9999988 8999999999999883   368999999999999999875