Citrus Sinensis ID: 018185

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAYRDERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIESCA
ccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccccccEEcccccccccccccHHHHHHHHHcc
ccHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccHHccccccHHHHHHHHHHHHHHHHHHccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHccHHHHHcccccEEcccccEEccccccccHHHHHHccc
MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRatthdpstppdpkrlttllsfghsSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKhgsfilqdqlsvypsaggrnylklsnfrdnttpltwELSSWVRWYALYLEHLLSTSRVLGFFLssssssvemdkeEEKVSALVNIDLLKEVDSLLSLLEQMcktpdclhvrgnplvddimGLVGEDYLSAINEVSIRVSEFNnrlgclslgDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAyrdermivstgrrdkasesarfgdrlsrrygdsvrfssarfgfnrfpnflvlDSIESCA
MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRAtthdpstppdpKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITalkdkvakerayrdermivstgrrdkasesarfgdrlsrrygdsvrfssarfgfnrfpnflvldsiesca
MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLssssssVEMDKEEEKVSALVNIdllkevdsllslleQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAYRDERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIESCA
********LMGIIK*******AAIISKPKTLTLHLSLL******************LLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFL****************SALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAY******************************DSVRFSSARFGFNRFPNFLVLDS*****
****RLA*LMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFF**********************IDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLIT******************************************************NRFPNFLVLDSIESC*
MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRAT********DPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSS*************VSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAYRDERMIVS***********RFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIESCA
**MGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSS*********EKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAYRDERMIVSTGR****SESARFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIESCA
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MNMGRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKERAYRDERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIESCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q8L936365 Putative clathrin assembl yes no 0.969 0.953 0.594 1e-113
Q8H0W9338 Putative clathrin assembl no no 0.827 0.878 0.338 2e-37
Q9FKQ2295 Putative clathrin assembl no no 0.785 0.955 0.349 1e-36
Q8VYT2 601 Putative clathrin assembl no no 0.520 0.311 0.323 5e-17
Q9LVD8 591 Putative clathrin assembl no no 0.518 0.314 0.312 3e-16
Q8LBH2 571 Putative clathrin assembl no no 0.462 0.290 0.333 4e-16
Q9LHS0 544 Putative clathrin assembl no no 0.498 0.329 0.326 2e-14
P94017 692 Putative clathrin assembl no no 0.470 0.244 0.316 3e-14
Q8GX47 611 Putative clathrin assembl no no 0.420 0.247 0.305 5e-13
Q8S9J8 635 Probable clathrin assembl no no 0.392 0.222 0.319 9e-13
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2 Back     alignment and function desciption
 Score =  410 bits (1053), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/360 (59%), Positives = 264/360 (73%), Gaps = 12/360 (3%)

Query: 3   MGRL---ANLMGIIKDKVSQSKAAIIS---KPKTLTLHLSLLRATTHDPSTPPDPKRLTT 56
           MGR+   A+L+G IKDK SQSKAA++S   K KTL+ HLS+LRATTHDPSTPP  + L  
Sbjct: 1   MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60

Query: 57  LLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSA 116
           +LS G  SRATA++ +E++M+RL TT DA VA+KSLI +HHIVKHG FILQDQLSV+P++
Sbjct: 61  ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120

Query: 117 GGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEE 176
           GGRNYLKLS FRD  +PL WELSSWVRWYALYLEHLLSTSR++GFF+SS+SS++  ++ E
Sbjct: 121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180

Query: 177 EKVSALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSI 236
           E VS+L N DLL+E+D+L+ LLE+ CK PD     G  L D I  LVGEDY+S+INE+  
Sbjct: 181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240

Query: 237 RVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHR--KRVLIEAFWGLITALKDK 294
           R +EF  R   LS GD++EL CALKRLE CKERLS + H   KR  I+ FWGL+  +K  
Sbjct: 241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300

Query: 295 VAK-ERAYRD-ERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARF-GFNRFPNFLV 351
           +   E  Y   E+ IV  G+RDK  ESARF DRL   Y + VRFSS RF   +RF NF V
Sbjct: 301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSSGRFSNVDRF-NFPV 359

Arabidopsis thaliana (taxid: 3702)
>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410 OS=Arabidopsis thaliana GN=At5g10410 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKQ2|CAP18_ARATH Putative clathrin assembly protein At5g65370 OS=Arabidopsis thaliana GN=At5g65370 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
359496894354 PREDICTED: putative clathrin assembly pr 0.977 0.991 0.639 1e-127
147780138354 hypothetical protein VITISV_009769 [Viti 0.977 0.991 0.636 1e-126
30841458351 fiber protein Fb19 [Gossypium barbadense 0.930 0.951 0.658 1e-125
255586691271 clathrin assembly protein, putative [Ric 0.738 0.977 0.743 1e-113
297798052364 hypothetical protein ARALYDRAFT_353021 [ 0.969 0.956 0.6 1e-113
15236113365 putative clathrin assembly protein [Arab 0.969 0.953 0.594 1e-112
21617928364 unknown [Arabidopsis thaliana] 0.966 0.953 0.594 1e-110
449508392361 PREDICTED: putative clathrin assembly pr 0.944 0.939 0.546 1e-102
449439019361 PREDICTED: putative clathrin assembly pr 0.944 0.939 0.546 1e-102
357463251328 hypothetical protein MTR_3g086670 [Medic 0.896 0.981 0.548 1e-94
>gi|359496894|ref|XP_002263086.2| PREDICTED: putative clathrin assembly protein At4g40080-like [Vitis vinifera] gi|297745712|emb|CBI41037.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/358 (63%), Positives = 286/358 (79%), Gaps = 7/358 (1%)

Query: 3   MGR---LANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLS 59
           MGR   L +L+G IKDK S SKAA++SKP TL+LHLSLLRATTH+PS PP  K +  LLS
Sbjct: 1   MGRSTKLRDLIGAIKDKASLSKAALLSKPNTLSLHLSLLRATTHEPSIPPHDKHIAALLS 60

Query: 60  FGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGR 119
           FG+SSRATA+AVIEALMDRLQ THDASVAIK LIAVHHI++ GSFILQDQLS+YPS GGR
Sbjct: 61  FGNSSRATASAVIEALMDRLQNTHDASVAIKCLIAVHHIIRRGSFILQDQLSIYPSTGGR 120

Query: 120 NYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKV 179
           NYLKLS FRD++ P+TWELSSWVRWY+ YLEH+LSTSRVLGFFL SS S+V  D+E ++V
Sbjct: 121 NYLKLSGFRDSSDPITWELSSWVRWYSCYLEHVLSTSRVLGFFLCSSLSTVNKDEEVDQV 180

Query: 180 SALVNIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVS 239
           SAL N  L++E+ SL+ ++E+  K PD LHV G+ L+ ++M LVG+DYLSAINEVS+R++
Sbjct: 181 SALTNQQLIREIASLVDVIEETYKAPDSLHVHGDRLLSEVMNLVGDDYLSAINEVSLRIN 240

Query: 240 EFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALKDKVAKER 299
           EF  RL  LS G+SVEL CALKRLE+CKER S+  HRK+  +E FWGL++ +KD+V KE 
Sbjct: 241 EFGERLRVLSFGESVELMCALKRLENCKERSSIQPHRKKASMETFWGLVSEMKDRVGKE- 299

Query: 300 AYRDERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARFGFNRFPNFLVLDSIES 357
            YR++  +V  GRR++A ESAR+G+R+  +  DSVRF S R   NRF  F +L+S+ES
Sbjct: 300 -YREDARMVMIGRRERACESARWGERV-LKSSDSVRFGSGRLVSNRFA-FSILESVES 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147780138|emb|CAN73287.1| hypothetical protein VITISV_009769 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30841458|gb|AAP34366.1| fiber protein Fb19 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|255586691|ref|XP_002533971.1| clathrin assembly protein, putative [Ricinus communis] gi|223526043|gb|EEF28409.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297798052|ref|XP_002866910.1| hypothetical protein ARALYDRAFT_353021 [Arabidopsis lyrata subsp. lyrata] gi|297312746|gb|EFH43169.1| hypothetical protein ARALYDRAFT_353021 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15236113|ref|NP_195718.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|46395895|sp|Q8L936.2|CAP16_ARATH RecName: Full=Putative clathrin assembly protein At4g40080 gi|5918311|emb|CAB56391.1| putative protein [Arabidopsis thaliana] gi|7271063|emb|CAB80671.1| putative protein [Arabidopsis thaliana] gi|119360027|gb|ABL66742.1| At4g40080 [Arabidopsis thaliana] gi|332661765|gb|AEE87165.1| putative clathrin assembly protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21617928|gb|AAM66978.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449508392|ref|XP_004163301.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439019|ref|XP_004137285.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357463251|ref|XP_003601907.1| hypothetical protein MTR_3g086670 [Medicago truncatula] gi|355490955|gb|AES72158.1| hypothetical protein MTR_3g086670 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2140084365 AT4G40080 [Arabidopsis thalian 0.969 0.953 0.558 2.6e-95
TAIR|locus:2142409338 AT5G10410 [Arabidopsis thalian 0.824 0.875 0.331 7.4e-34
TAIR|locus:2168287295 AT5G65370 [Arabidopsis thalian 0.785 0.955 0.330 4.2e-31
TAIR|locus:2120780 601 AT4G25940 [Arabidopsis thalian 0.409 0.244 0.370 8.4e-17
TAIR|locus:2165615 591 AT5G57200 [Arabidopsis thalian 0.406 0.247 0.359 9.6e-16
TAIR|locus:2049587 571 AT2G01600 [Arabidopsis thalian 0.406 0.255 0.346 4.8e-15
TAIR|locus:2182432 544 AT5G35200 [Arabidopsis thalian 0.420 0.277 0.333 3.4e-13
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.353 0.183 0.353 4e-13
TAIR|locus:505006543 635 AT4G32285 [Arabidopsis thalian 0.392 0.222 0.319 4.6e-13
TAIR|locus:2132382 611 AT4G02650 [Arabidopsis thalian 0.420 0.247 0.305 9.5e-13
TAIR|locus:2140084 AT4G40080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 201/360 (55%), Positives = 245/360 (68%)

Query:     3 MGRL---ANLMGIIKDKVSQSKAAIIS---KPKTLTLHLSLLRATTHDPSTPPDPKRLTT 56
             MGR+   A+L+G IKDK SQSKAA++S   K KTL+ HLS+LRATTHDPSTPP  + L  
Sbjct:     1 MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60

Query:    57 LLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSA 116
             +LS G  SRATA++ +E++M+RL TT DA VA+KSLI +HHIVKHG FILQDQLSV+P++
Sbjct:    61 ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120

Query:   117 GGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLXXXXXXVEMDKEE 176
             GGRNYLKLS FRD  +PL WELSSWVRWYALYLEHLLSTSR++GFF+      +  ++ E
Sbjct:   121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180

Query:   177 EKVSALVNIXXXXXXXXXXXXXXQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSI 236
             E VS+L N               + CK PD     G  L D I  LVGEDY+S+INE+  
Sbjct:   181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240

Query:   237 RVSEFNNRLGCLSLGDSVELACALKRLEDCKERLSVLSHR--KRVLIEAFWGLITALKDK 294
             R +EF  R   LS GD++EL CALKRLE CKERLS + H   KR  I+ FWGL+  +K  
Sbjct:   241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300

Query:   295 VAK-ERAYRD-ERMIVSTGRRDKASESARFGDRLSRRYGDSVRFSSARFG-FNRFPNFLV 351
             +   E  Y   E+ IV  G+RDK  ESARF DRL   Y + VRFSS RF   +RF NF V
Sbjct:   301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSSGRFSNVDRF-NFPV 359
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2142409 AT5G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168287 AT5G65370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L936CAP16_ARATHNo assigned EC number0.59440.96930.9534yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011452001
SubName- Full=Chromosome undetermined scaffold_309, whole genome shotgun sequence; (348 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 2e-24
pfam07651278 pfam07651, ANTH, ANTH domain 4e-13
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 2e-12
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information 
 Score = 95.7 bits (239), Expect = 2e-24
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)

Query: 33  LHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSL 92
           L  ++ +AT+HD   PP  K +  +++   SS A+  +   AL  RL    +  V +K+L
Sbjct: 1   LEKAVKKATSHD-EAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDR-NWVVVLKAL 58

Query: 93  IAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHL 152
           I +H +++ G      +L        R +L LSNF D ++ L +  S+++R YA YL+  
Sbjct: 59  ILLHRLLREGHPSFLQELLSR-----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDER 113

Query: 153 LS 154
           LS
Sbjct: 114 LS 115

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machinery for clathrin-mediated membrane budding. Length = 117
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.98
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 99.73
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.26
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.18
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 98.92
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.13
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.93
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.85
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.67
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.57
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.57
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.37
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.2
cd03561133 VHS VHS domain family; The VHS domain is present i 95.19
KOG2057 499 consensus Predicted equilibrative nucleoside trans 93.19
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 82.28
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-66  Score=526.98  Aligned_cols=268  Identities=32%  Similarity=0.425  Sum_probs=245.0

Q ss_pred             HHHHhhhhccchhhhhhcCCCCccchhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhH
Q 018185            8 NLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASV   87 (359)
Q Consensus         8 ~~~g~lKD~asi~~A~~~~~~~~~dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~V   87 (359)
                      +++|++||++|+++|++++  ...++++||+|||||++ .|||+|||++||.+|+++++++++||++|++||++|+||+|
T Consensus         1 ~~~gaiKD~~s~~~a~v~~--~~~~l~~AV~KATsh~~-~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~V   77 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVAS--AGSDLEKAVVKATSHDD-MPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTV   77 (491)
T ss_pred             CCccccchhhhhHHHHhhh--hhhhHHHHHHhhccCCC-CCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceee
Confidence            4789999999999999986  34489999999999997 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcchHHHhhhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhcccccccCC
Q 018185           88 AIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSS  167 (359)
Q Consensus        88 alKaLIviH~LlreG~~~f~d~l~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d~~~~~  167 (359)
                      ||||||+||+||++|++.|.+++..+     +..|+|++|+|++++.+||+++|||||+.||+||+.+|+.+++|++.++
T Consensus        78 AlKsLIliH~ll~~G~~~f~~~l~~~-----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~  152 (491)
T KOG0251|consen   78 ALKALILIHRLLKEGDPSFEQELLSR-----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVK  152 (491)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHhc-----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999999999999999999999533     3679999999999989999999999999999999999999999998764


Q ss_pred             CCcccchhhhhhhccC-hHHHHHHHHHHHHHHHHh-ccCCCCcCCCCcHHHHHHHHHHHHH---HHHHHHHHHH-HHhhh
Q 018185          168 SSVEMDKEEEKVSALV-NIDLLKEVDSLLSLLEQM-CKTPDCLHVRGNPLVDDIMGLVGED---YLSAINEVSI-RVSEF  241 (359)
Q Consensus       168 s~~~~~~~~~~~~~L~-~~~LL~~l~~LQ~lid~l-~~~p~~~~~~~N~lI~~af~Ll~~D---ly~~inEgvi-lLe~f  241 (359)
                      .+.    ....++++. ++.+|++++.||.|||++ +|+|.+.+ .+|.||++||.||++|   +|+++||||| +||+|
T Consensus       153 ~~~----~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~-~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekf  227 (491)
T KOG0251|consen  153 RGK----EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSA-LNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKF  227 (491)
T ss_pred             Ccc----cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchh-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            331    122334444 678999999999999995 99999985 9999999999999999   7999999999 99999


Q ss_pred             hccccCCChhhHHHHHHHHHHHHHhhhhHHhhhHHHHHHhHhHHHHHHHHH
Q 018185          242 NNRLGCLSLGDSVELACALKRLEDCKERLSVLSHRKRVLIEAFWGLITALK  292 (359)
Q Consensus       242 fEm~~~l~~~dA~~aL~iyKrf~~qtE~l~~f~~~~k~~~~~~w~~~~~~k  292 (359)
                      |||.    ++||.++|+|||||.+|+|+|++||++||.+--+.|..+-.+|
T Consensus       228 fem~----~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~  274 (491)
T KOG0251|consen  228 FEMS----KHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLK  274 (491)
T ss_pred             hhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchh
Confidence            9985    6999999999999999999999999999998888898888888

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 7e-05
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 9e-05
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 1e-04
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 1e-04
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 36  SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAI-KSLIA 94
           ++ +ATTH+    P  K L  L+   +        + ++L +R  TT+ + V + KSLI 
Sbjct: 32  TVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFER--TTNSSWVVVFKSLIT 88
Query: 95  VHHIVKHGSFILQDQLSVYPSAGGRNYL-KLSNFRDNTTPLTWELSSWVRWYALYLEHLL 153
            HH++ +G+    ++   Y ++  RN L  LSNF D +    +++S+++R Y+ YL    
Sbjct: 89  THHLMVYGN----ERFIQYLAS--RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKA 142
Query: 154 STSRVLGF 161
            + R + F
Sbjct: 143 VSYRQVAF 150
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 1e-33
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 4e-33
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 2e-29
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  124 bits (313), Expect = 1e-33
 Identities = 43/268 (16%), Positives = 99/268 (36%), Gaps = 16/268 (5%)

Query: 4   GRLANLMGIIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHS 63
             +      + D+++ ++ ++        +  ++ +ATTH+    P  K L  L+   + 
Sbjct: 4   IGIHMSGQSLTDRITAAQHSVTGS----AVSKTVCKATTHEIM-GPKKKHLDYLIQCTNE 58

Query: 64  SRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLSVYPSAGGRNYLK 123
                  + ++L +R   +    V  KSLI  HH++ +G+      L+            
Sbjct: 59  MNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYLA-----SRNTLFN 112

Query: 124 LSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVEMDKEEEKVSALV 183
           LSNF D +    +++S+++R Y+ YL     + R + F  +      +            
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTE--- 169

Query: 184 NIDLLKEVDSLLSLLEQMCKTPDCLHVRGNPLVDDIMGLVGEDYLSAINEVSIRVSEFNN 243
              LLK V  + + ++ +       +   N +++    L+ +D +      +  +     
Sbjct: 170 --KLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLE 227

Query: 244 RLGCLSLGDSVELACALKRLEDCKERLS 271
           +   +      E     K+      R+S
Sbjct: 228 KYFDMKKNQCKEGLDIYKKFLTRMTRIS 255
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.44
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.43
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.05
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.05
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.44
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 96.49
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 96.15
3g2s_A149 C-terminal fragment of sortilin-related receptor; 96.06
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 96.03
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.6
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.59
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.44
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 95.21
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.19
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-60  Score=451.56  Aligned_cols=247  Identities=19%  Similarity=0.273  Sum_probs=222.0

Q ss_pred             hhhhccchhhhhhcCCCCccchhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHH
Q 018185           12 IIKDKVSQSKAAIISKPKTLTLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKS   91 (359)
Q Consensus        12 ~lKD~asi~~A~~~~~~~~~dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKa   91 (359)
                      .+.|+-...+-.+.+    +++++||+|||+|++ +|||+|||++||.+|+++++++++++++|.+|++ ++||+|||||
T Consensus        12 ~~~~~~~~~~~~~~~----s~l~~aV~KATs~~~-~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~~~w~v~~Ka   85 (271)
T 3zyl_A           12 SLTDRITAAQHSVTG----SAVSKTVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKS   85 (271)
T ss_dssp             CHHHHHHHHHHHHHH----HHHHHHHHHHTCSSS-SCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-SSCHHHHHHH
T ss_pred             cHHHHHHHHHhcccc----hHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-CCchHHHHHH
Confidence            345555555555543    379999999999998 9999999999999999999999999999999999 7999999999


Q ss_pred             HHHHHHHHhcCCcchHHHhhhccCCCCCCceeccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhhcccccccCCCCcc
Q 018185           92 LIAVHHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTPLTWELSSWVRWYALYLEHLLSTSRVLGFFLSSSSSSVE  171 (359)
Q Consensus        92 LIviH~LlreG~~~f~d~l~~y~s~~g~~~L~Ls~F~D~ss~~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d~~~~~s~~~  171 (359)
                      ||++|+||++|+|.+.+++.    +++ ++|+|++|.|.+++.+|++++|||+|++||++|+.+|+.++.|+++.+.   
T Consensus        86 LivlH~llreG~~~~l~~~~----~~~-~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~k~---  157 (271)
T 3zyl_A           86 LITTHHLMVYGNERFIQYLA----SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKR---  157 (271)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH----HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTSCC---
T ss_pred             HHHHHHHHhcCCHHHHHHHH----hCC-CeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccccCC---
Confidence            99999999999998877662    233 6899999999987788999999999999999999999999999986532   


Q ss_pred             cchhhhhhhccChHHHHHHHHHHHHHHHHh-ccCCCCcCCCCcHHHHHHHHHHHHH---HHHHHHHHHH-HHhhhhcccc
Q 018185          172 MDKEEEKVSALVNIDLLKEVDSLLSLLEQM-CKTPDCLHVRGNPLVDDIMGLVGED---YLSAINEVSI-RVSEFNNRLG  246 (359)
Q Consensus       172 ~~~~~~~~~~L~~~~LL~~l~~LQ~lid~l-~~~p~~~~~~~N~lI~~af~Ll~~D---ly~~inEgvi-lLe~ffEm~~  246 (359)
                        ..++++++|+++.||+++|.||+||+++ +|+|.+.+ .+|+++++||.||++|   +|+++||||| +||+||||. 
T Consensus       158 --~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~-~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~-  233 (271)
T 3zyl_A          158 --GADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNE-LTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMK-  233 (271)
T ss_dssp             --STTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGG-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSC-
T ss_pred             --CCCCccccCCHHHHHHHHHHHHHHHHHHHccCccccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence              2345788999999999999999999995 99999975 9999999999999999   7999999999 999999985 


Q ss_pred             CCChhhHHHHHHHHHHHHHhhhhHHhhhHHHHH
Q 018185          247 CLSLGDSVELACALKRLEDCKERLSVLSHRKRV  279 (359)
Q Consensus       247 ~l~~~dA~~aL~iyKrf~~qtE~l~~f~~~~k~  279 (359)
                         +.||++||+|||||.+|+|+|++||++||.
T Consensus       234 ---~~da~~aleiykrf~~Q~~~L~~Fy~~ck~  263 (271)
T 3zyl_A          234 ---KNQCKEGLDIYKKFLTRMTRISEFLKVAEQ  263 (271)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               699999999999999999999999999998
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 5e-25
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 2e-23
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 2e-09
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 96.5 bits (240), Expect = 5e-25
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 36  SLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAV 95
           S+ +ATT +    P  K L  L+   +    +   +   L++R Q   +  V  KSLI  
Sbjct: 6   SVCKATTEEC-IGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQN-ANWVVVYKSLITT 63

Query: 96  HHIVKHGSFILQDQLSVYPSAGGRNYLKLSNFRDNTTP-----------LTWELSSWVRW 144
           HH++ +G+      L     A   +   LS+F D  T            + +++S ++R 
Sbjct: 64  HHLMAYGNERFMQYL-----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRR 118

Query: 145 YALYLEHLLSTSRVLGF 161
           YA YL     + R + F
Sbjct: 119 YAKYLNEKSLSYRAMAF 135
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 99.93
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.92
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.81
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 96.04
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.84
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.54
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.91
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 93.89
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.6e-33  Score=239.89  Aligned_cols=127  Identities=27%  Similarity=0.396  Sum_probs=115.4

Q ss_pred             chhhhhhhcCCCCCCCCCChhhHHHHHHhccCCcccHHHHHHHHHHHhCcCCChhHHHHHHHHHHHHHhcCCcchHHHhh
Q 018185           32 TLHLSLLRATTHDPSTPPDPKRLTTLLSFGHSSRATAAAVIEALMDRLQTTHDASVAIKSLIAVHHIVKHGSFILQDQLS  111 (359)
Q Consensus        32 dl~~AIvKATth~~~~pPK~KhV~~IL~~t~~s~~~~~~~v~aL~~RL~~T~~W~ValKaLIviH~LlreG~~~f~d~l~  111 (359)
                      .|++||+|||+|++ .|||+|||++|+.+|+++++++++++++|.+|++ ++||+|++|||+++|+||++|+|.|.+++.
T Consensus         2 ~l~~aV~kAT~~~~-~~Pk~K~v~~i~~~t~~~~~~~~~i~~~L~~Rl~-~~~w~v~~K~L~llh~ll~~G~~~~~~~~~   79 (140)
T d1hx8a2           2 GLAKSVCKATTEEC-IGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ-NANWVVVYKSLITTHHLMAYGNERFMQYLA   79 (140)
T ss_dssp             HHHHHHHHHSCSSS-SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            48899999999998 9999999999999999999999999999999996 689999999999999999999999988874


Q ss_pred             hccCCCCCCceeccCCCCCCCC-----------CccchhHHHHHHHHHHHHHHhhhhhccccccc
Q 018185          112 VYPSAGGRNYLKLSNFRDNTTP-----------LTWELSSWVRWYALYLEHLLSTSRVLGFFLSS  165 (359)
Q Consensus       112 ~y~s~~g~~~L~Ls~F~D~ss~-----------~s~~~s~~VR~Ya~YLdeRl~~~r~l~~d~~~  165 (359)
                      .     ++++|+|++|+|.++.           .+|+++.|||+||+||+||+.+||.+++|+++
T Consensus        80 ~-----~~~~~~l~~f~d~~~~~~~~~~~~~~~~~~~~~~~Ir~Ya~yL~eRl~~~R~~~~D~~r  139 (140)
T d1hx8a2          80 S-----SNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCK  139 (140)
T ss_dssp             H-----TTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG
T ss_pred             h-----CCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhccCeee
Confidence            2     4678999999987542           23689999999999999999999999999975
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure