Citrus Sinensis ID: 018194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS
Secondary Structure (PSIPRED)
cccccccHHHHHHHccHHHHHHHHcHHHHHccHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEHHHcccccHHHHHHHHHHccccccEEEEEEEEcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEEEccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccEEEEHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MDSLALFCTGALLAGGLYWFVCVLgpaeqkgkravnlsggsisaeeVEDNYKEYWKFFkrpkettkekvpDFVDTFYNLVTDIyewgwgqsfhfspsipgkshrdaTRLHEEMAVDLidvkagdrildvgcgvggpmRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVcgnflkmpfednhfdgaysieatchapkleDVYAEVFRVLKPgslyvsyewvttdkyeaenkeHVDIIQgiergdalpglrsYAEITEIAKRVGFevvkekdlakppaqpwwtrlkMGRFAYWRNHILVTILAAlgiapkgtvgVHDMLFKTADYltrggetgiftpmhmvllrkphppkss
Flexible Loop (DISEMBL)
MDSLALFCTGALLAGGLYWFVCVLGPAEQKgkravnlsggsisaeevedNYKEYWKFfkrpkettkekvpdFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVttdkyeaenkeHVDIIQGiergdalpgLRSYAEITEIAKRvgfevvkekdlakppaqpwwtrLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMvllrkphppkss
Low Complexity Region (SEG)
MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS
Disordered region (IsUnstruct)
***LALFCTGALLAGGLYWFVCVLGPAE*****************EVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPS**********RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLL*********
Disordered Region (DISOPRED)
*******CTGALLAGGLYWFVCVLGPAEQ*******************DNYKEYW*****************VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVL***PH*****
Disordered Region (DISEMBL)
MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPS********ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS
Disordered Region (DISPRO)
*DSLALFCTGALLAGGLYWFVCVLGPAEQK**********SISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH*****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q39227	361	24-methylenesterol C-meth	yes	no	1.0	0.994	0.830	0.0
Q94JS4	359	24-methylenesterol C-meth	no	no	0.983	0.983	0.790	1e-175
O82427	363	24-methylenesterol C-meth	yes	no	0.983	0.972	0.721	1e-153
H2E7T5	378	Squalene methyltransferas	N/A	no	0.952	0.904	0.416	4e-74
Q6ZIX2	344	Cycloartenol-C-24-methylt	no	no	0.877	0.915	0.420	2e-72
H2E7T6	378	Squalene methyltransferas	N/A	no	0.955	0.907	0.401	3e-72
H2E7T7	379	Botryococcene C-methyltra	N/A	no	0.913	0.865	0.405	3e-71
Q9LM02	336	Cycloartenol-C-24-methylt	no	no	0.888	0.949	0.408	3e-69
H2E7T9	389	Sterol methyltransferase-	N/A	no	0.880	0.812	0.438	3e-68
Q54I98	354	Probable cycloartenol-C-2	yes	no	0.860	0.872	0.403	7e-65

>sp|Q39227|SMT2_ARATH 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/360 (83%), Positives = 337/360 (93%), Gaps = 1/360 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI 
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQ 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCG
Sbjct: 121 VKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVTT+K++AE+ 
Sbjct: 181 NFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEKFKAEDD 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLR+Y +I E AK+VGFE+VKEKDLA PPA+PWWTRLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWTRLKMGRLAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS 359
           WRNHI+V IL+A+G+APKGTV VH+MLFKTADYLTRGGETGIF+PMHM+L RKP  P+ S
Sbjct: 301 WRNHIVVQILSAVGVAPKGTVDVHEMLFKTADYLTRGGETGIFSPMHMILCRKPESPEES 360

Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4EC: 3

>sp|Q94JS4|SMT3B_ARATH 24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1

 Score =  615 bits (1585), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 280/354 (79%), Positives = 322/354 (90%), Gaps = 1/354 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDS+AL+CT  L+AG +YWF+CVLGPAE+KGKRA +LSGGSISAE+V+DNY +YW FF++
Sbjct: 1   MDSVALYCTAGLIAGAVYWFICVLGPAERKGKRASDLSGGSISAEKVKDNYNQYWSFFRK 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  + EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP +PGKS +DATR+HEEMAVDLI 
Sbjct: 61  PKEIESAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIK 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK G +ILD GCGVGGPMRAIAAHS+A V GITINEYQV RA+LHNKKAGLDSLC VVCG
Sbjct: 121 VKPGQKILDAGCGVGGPMRAIAAHSKAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFLKMPF++N FDGAYSIEATCHAPKLE+VY+E+FRV+KPGSL+VSYEWVTT+KY  +++
Sbjct: 181 NFLKMPFDENTFDGAYSIEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWVTTEKYRDDDE 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EH D+IQGIERGDALPGLRSYA+I   AK+VGFEVVKEKDLAKPP++PWW RLKMGR AY
Sbjct: 241 EHKDVIQGIERGDALPGLRSYADIAVTAKKVGFEVVKEKDLAKPPSKPWWNRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           WRNH++V IL+A+G+APKGTV VH MLFKTADYLTRGGETGIF+PMHM+L RKP
Sbjct: 301 WRNHVVVVILSAIGVAPKGTVDVHKMLFKTADYLTRGGETGIFSPMHMILCRKP 354

Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|O82427|SMT2_ORYSJ 24-methylenesterol C-methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Smt2-1 PE=2 SV=2

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 259/359 (72%), Positives = 292/359 (81%), Gaps = 6/359 (1%)

Query: 1   MDSLALFCTGALLAGGL-YWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFK 59
           M++  +  T A +   L YWFV V+G AE KGKRAV+L  GSI+ ++V+D Y +YW FF+
Sbjct: 1   MEAATMAWTAAGVGMALVYWFVWVMGAAEVKGKRAVDLKMGSITNDKVKDKYTQYWSFFR 60

Query: 60  RPKET-----TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMA 114
           RPKET     + EKVP FVDTFYNLVTDIYEWGWGQSFHFSPS+PG+SHR+ATR+HEE  
Sbjct: 61  RPKETATTEASAEKVPAFVDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHREATRVHEERV 120

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
            DL+  K G R+LDVGCGVGGPMRAIAAHS +NVVGITINEYQVNRAR HN+KAGLDS C
Sbjct: 121 ADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGLDSRC 180

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKY 234
           EVVCGNFL MPF D  FDGAYSIEATCHAP+L+DVY EVFRVLKPG LYVSYEWVTT  Y
Sbjct: 181 EVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLKPGGLYVSYEWVTTSLY 240

Query: 235 EAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKM 294
            A+N EHV+ I GIERGDALPGLR   EI  IAK VGFEV+KE DLA PPA PWWTRLKM
Sbjct: 241 RADNPEHVEAIHGIERGDALPGLRRQDEIASIAKEVGFEVLKELDLALPPALPWWTRLKM 300

Query: 295 GRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           GR AYWRN ++V +L  L IAPKG   VH+ML++TA +LTRGGETGIFTPMHMVLLRKP
Sbjct: 301 GRIAYWRNSLVVRVLTMLRIAPKGVCEVHEMLYETAQHLTRGGETGIFTPMHMVLLRKP 359

Catalyzes the methyl transfer from S-adenosyl-methionine to the methylene group of 24-methylene lophenol to form 24-ethylidene lophenol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 3

>sp|H2E7T5|SQMT1_BOTBR Squalene methyltransferase 1 OS=Botryococcus braunii GN=TMT-1 PE=1 SV=1

 Score =  278 bits (712), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/355 (41%), Positives = 203/355 (57%), Gaps = 13/355 (3%)

Query: 10  GALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKE-----T 64
           G ++A  L + +    P ++   + ++L  G IS E+V   Y +Y K +           
Sbjct: 25  GLVVAITLGYLIISRLPGQKSRPKLLDLKTGGISFEKVAAVYDDYDKSYGEGDHGELHVK 84

Query: 65  TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGD 124
            K KV    +TFY+ VTD YEW WG SFHFS  +PG SH  +  LHE      + +K G 
Sbjct: 85  DKNKVFQLANTFYDFVTDGYEWAWGSSFHFSQRMPGLSHAASQMLHESRMASFLRLKPGM 144

Query: 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
           + LDVGCGVG P R +A+ S A V GITINEYQ+ RA  HNK+ GL    + V GNF  M
Sbjct: 145 KCLDVGCGVGNPGRTVASCSGAEVTGITINEYQIKRAEYHNKRTGLVGYFKPVVGNFCAM 204

Query: 185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDI 244
           PF+D  FD A+++++TCHAPKLEDVY+EVFRVLKPG L+ +YEWV+T  Y+  N  HV +
Sbjct: 205 PFKDKTFDAAFAMDSTCHAPKLEDVYSEVFRVLKPGGLFATYEWVSTKDYDPNNSRHVKV 264

Query: 245 IQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPP--AQPWW----TRLKMGRFA 298
           +  I  G+ LP +RS+ +  +  K VGF++V   DLA  P   +PW+      +K G   
Sbjct: 265 MNSIIFGNGLPNIRSWKQAEDAGKNVGFKLVTSFDLATAPPVGKPWYYVPELMVKYGLLT 324

Query: 299 YWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
             +   LV     +G+ P     V +M+      L  GG T IFTPMH+++  KP
Sbjct: 325 IQK--ALVRGACNVGLLPNEGWKVCNMVADMVPNLVEGGATNIFTPMHLLIFEKP 377

Converts squalene to mono- and dimethyl derivatives, but not to tri- and tetramethylated products. Unable to methylate cycloartenol, zymosterol or lanosterol. Methylates both C-3 and C22 positions, but only C-3 position in monomethylated products. Produces mainly dimethylated squalene.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: 2

>sp|Q6ZIX2|SMT1_ORYSJ Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 193/328 (58%), Gaps = 13/328 (3%)

Query: 39  GGSISAEEVE---DNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFS 95
           GG I+ +EV+   D Y++Y  ++   +E  K    D V+ +Y+L T  YE+GWG+SFHF+
Sbjct: 14  GGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFA 73

Query: 96  PSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE 155
               G+S R++ + HE      + VK G ++LDVGCG+GGP+R IA  S A+V G+  NE
Sbjct: 74  HRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNE 133

Query: 156 YQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFR 215
           YQ+ R +  N+ AG+   C+ V  +F+KMPF DN FD  Y+IEATCHAP     Y E++R
Sbjct: 134 YQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYR 193

Query: 216 VLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
           VLKPG  +  YEW  TD YE  N  H  I   IE G+ LP +RS  +  + AK  GFEV+
Sbjct: 194 VLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIRSTQQCLQAAKDAGFEVI 253

Query: 276 KEKDLAKPPAQPWWTRLKMGRFAYWR----------NHILVTILAALGIAPKGTVGVHDM 325
            +KDLA+    PW+  L   RF+                +V  L  +G+AP+G+  V + 
Sbjct: 254 WDKDLAEDSPVPWYLPLDPSRFSLSSFRLTTVGRAITRTMVKALEYVGLAPQGSERVSNF 313

Query: 326 LFKTADYLTRGGETGIFTPMHMVLLRKP 353
           L K A+ L  GG+  IFTPM+  L+RKP
Sbjct: 314 LEKAAEGLVEGGKKEIFTPMYFFLVRKP 341

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|H2E7T6|SQMT2_BOTBR Squalene methyltransferase 2 OS=Botryococcus braunii GN=TMT-2 PE=1 SV=1

 Score =  272 bits (696), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/356 (40%), Positives = 202/356 (56%), Gaps = 13/356 (3%)

Query: 9   TGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKE----- 63
           TG + A  L + +    P ++   + ++L+ G I  E+V + + +Y K + +        
Sbjct: 24  TGLIAALILGYIIITRLPGQKTKPKLLDLTAGGIPFEKVGEVFNDYDKSYGKGTHGELHV 83

Query: 64  TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAG 123
               KV    +TFY+ VTD YEW WG SFHFS  +PG SH  +  LHE      + +K G
Sbjct: 84  QDTNKVFQLANTFYDFVTDGYEWAWGSSFHFSQRMPGLSHAASQMLHESRMASYLRLKPG 143

Query: 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
              LDVGCGVG P R +AA S A V GITIN+YQ+ RA  HN++ GL    +   GNF  
Sbjct: 144 MTCLDVGCGVGNPGRTVAACSGAVVTGITINKYQIQRAEYHNRRTGLVGFFKPTVGNFCN 203

Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD 243
           MPF+   FD A++++ATCHAPKLEDVY EVFRVLKPG  + +YEWV+T  Y+  N  HV 
Sbjct: 204 MPFDAKSFDAAFAMDATCHAPKLEDVYGEVFRVLKPGGFFATYEWVSTKNYDPTNTRHVK 263

Query: 244 IIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPP--AQPWW----TRLKMGRF 297
           ++  I  G+ LP +RS+ +  E  + VGF+++   DLA  P   +PW+      +K G  
Sbjct: 264 VMNSIIFGNGLPNIRSWKQAEEAGENVGFKLLTSFDLATAPPVGKPWYYVPELMVKYGLL 323

Query: 298 AYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
              +   LV    +LG+ P  +  V +M+      L  GG T IFTPMH+++ +KP
Sbjct: 324 KIQK--ALVRGACSLGLLPDQSWKVCNMVADMVPNLVEGGATDIFTPMHLLIFQKP 377

Converts squalene to mono- and dimethyl derivatives, but not to tri- and tetramethylated products. Unable to methylate cycloartenol, zymosterol or lanosterol. Methylates both C-3 and C22 positions, but only C-3 position in monomethylated products. Produces mainly monomethylated squalene and only 20% of dimethylated squalene.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: 2

>sp|H2E7T7|BOMT_BOTBR Botryococcene C-methyltransferase OS=Botryococcus braunii GN=TMT-3 PE=1 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/338 (40%), Positives = 203/338 (60%), Gaps = 10/338 (2%)

Query: 26  PAEQKGKRAV-NLSGGSISAEEVEDNYKEYWKFFKRPKE-----TTKEKVPDFVDTFYNL 79
           P  Q  K ++  +  G ++ E+V +   +Y   + + ++         K+    +TFY+L
Sbjct: 41  PGRQVAKPSLLQVRTGGVAFEKVAEVVADYSDSYGQTEKGELIVKDNNKIVSLANTFYDL 100

Query: 80  VTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRA 139
           +TD YEWGWG  FHFS  +PG S   +  LHE      + +K G ++LDVGCGVG P R 
Sbjct: 101 ITDGYEWGWGSGFHFSHRLPGMSFNASQLLHESRMASFLRLKPGMQVLDVGCGVGNPGRT 160

Query: 140 IAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199
           +AA S A V GITIN YQ+ RA LH K+AGL    + V GNF  MPF+D  FD A+++++
Sbjct: 161 VAACSGAVVTGITINAYQIKRAELHTKRAGLVGYFKPVQGNFCAMPFQDKSFDAAFAMDS 220

Query: 200 TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS 259
           TCHAPKLEDVY+EVFRVLKPG+ + +YEWV+T  Y++ N EHV  +  I  G+ LP +RS
Sbjct: 221 TCHAPKLEDVYSEVFRVLKPGAYFATYEWVSTKNYDSNNPEHVKCMNSIILGNGLPNIRS 280

Query: 260 YAEITEIAKRVGFEVVKEKDLA--KPPAQPWWT-RLKMGRFAYWRNH-ILVTILAALGIA 315
           + +  E  K VGF ++   D+A   P  +PW++   +M  +  +R H   +   + L + 
Sbjct: 281 WKQAEEAGKNVGFNLLTSLDMATNSPIGKPWYSVPERMVNWGLFRFHKACIRTASTLHLL 340

Query: 316 PKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           P  +     +L + A+ L +GG+  IFTPMH+++ +KP
Sbjct: 341 PPESWKFFYILAEMAENLVKGGQWDIFTPMHLLIFQKP 378

Converts botryococcene to mono- and dimethyl derivatives, but not to tri- and tetramethylated products. Unable to methylate cycloartenol, zymosterol or lanosterol, but can also use squalene as substrate. Methylates both C-3 and C22 positions, but only C-3 position in monomethylated squalenes. In contrast, monomethylated botryococcene occured mainly at the C-20 position yielding showacene, but also at the C-3 position yielding isoshowacene.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: 3

>sp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1

 Score =  262 bits (670), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 136/333 (40%), Positives = 191/333 (57%), Gaps = 14/333 (4%)

Query: 34  AVNLSGGSISAEEV---EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQ 90
           A NL GG I   +V    + Y++Y  F    +E  K    D V+ +Y+L T  YE+GWG+
Sbjct: 4   ASNL-GGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGE 62

Query: 91  SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG 150
           SFHF+    G+S R++ + HE      + ++ G ++LDVGCG+GGP+R IA  S + V G
Sbjct: 63  SFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTG 122

Query: 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVY 210
           +  NEYQ+ R +  N+ AG+D  C  V  +F+KMPF +N FD  Y+IEATCHAP     Y
Sbjct: 123 LNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCY 182

Query: 211 AEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270
            E++RVLKPG  + +YEW  TD ++ +N EH  I   IE GD LP +R   +  E  K+ 
Sbjct: 183 KEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIRLTTKCLEALKQA 242

Query: 271 GFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI----------LVTILAALGIAPKGTV 320
           GFEV+ EKDLAK    PW+  L    F+     +          +V IL  + +AP+G+ 
Sbjct: 243 GFEVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQGSQ 302

Query: 321 GVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
            V + L + A+ L  GG   IFTPM+  L RKP
Sbjct: 303 RVSNFLEQAAEGLVDGGRREIFTPMYFFLARKP 335

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|H2E7T9|SMTL2_BOTBR Sterol methyltransferase-like 2 OS=Botryococcus braunii GN=SMT-2 PE=2 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 145/331 (43%), Positives = 195/331 (58%), Gaps = 15/331 (4%)

Query: 37  LSGGSISAEEVEDNYKEYWKFFKRPKETT-------KEKVPDFVDTFYNLVTDIYEWGWG 89
           L+GG + A++V      Y K + +  + +       K++    VDTFYNLVTD YE  W 
Sbjct: 60  LTGGGVQAKDVSKVADVYDKSYGKEGDGSLTLHHLDKKESVAVVDTFYNLVTDGYEACWD 119

Query: 90  QSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVV 149
            SFHFSP     + R A  LHE     +  ++ G ++LD GCG+G P R +AA + A+V 
Sbjct: 120 TSFHFSPRPRFTNFRTAQILHEARIGYMARIQPGFKVLDCGCGIGNPGRTVAALTGAHVT 179

Query: 150 GITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDV 209
           GITINEYQV RA  H KKAGL  L   V G+F  MPF D  FD A++IEATCHAPKLE V
Sbjct: 180 GITINEYQVKRALYHTKKAGLTGLFTPVQGDFTDMPFADKTFDAAFAIEATCHAPKLEQV 239

Query: 210 YAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR 269
           Y E+FRVLKPG+ +  YE VTTDK++  NK HV+II  +  G+ +P +R++ +  E  K 
Sbjct: 240 YGEIFRVLKPGAFFAVYEAVTTDKFDPANKRHVEIINSLVYGNGIPDMRTWKQAEEAGKN 299

Query: 270 VGFEVVKEKD--LAKPPAQPWWTRLK----MGRFAYWRNHILVTILAALGIAPKGTVGVH 323
           VGF++    D   A P A PWW R+K     G   Y +   L   L +L + PK    V 
Sbjct: 300 VGFKLCCAFDAGAASPVALPWWERVKDMINWGVVKYTKAACLA--LDSLRLLPKDYWKVA 357

Query: 324 DMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354
           +M+  +   L   GETGIFTPM++++ +KP 
Sbjct: 358 NMVGDSLPDLVESGETGIFTPMYLLVWQKPE 388

Unable to convert squalene, botryococcene, cycloartenol, zymosterol or lanosterol to mono-, di-, tri- or tetramethylated derivatives.

Botryococcus braunii (taxid: 38881)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54I98|SMT1_DICDI Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1

 Score =  248 bits (632), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 130/322 (40%), Positives = 181/322 (56%), Gaps = 13/322 (4%)

Query: 45  EEVEDNYKEYWKFFK----RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG 100
           ++V+D    Y + FK    +  +  K      V+TFY+L TD YE+GWGQSFHF+     
Sbjct: 30  DKVDDTLNGYKELFKGNDDKAIQARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKY 89

Query: 101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
           +S   +   HE      + +  G +++D+GCGVGGPMR IA  S ANVVG+  NEYQ+ R
Sbjct: 90  ESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQR 149

Query: 161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
            +  N+ AGL  LC  +  +F+ +P EDN +D AY IEATCHAP L  +Y EVFR++KPG
Sbjct: 150 GKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPG 209

Query: 221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
            L+  YEW+ T+K+  E+   V+I + IE G+ LP L   AEI   AK  GFEV+   D+
Sbjct: 210 GLFGGYEWIMTNKFNPEDPVEVNIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDV 269

Query: 281 AKPPAQPWWTRLKMGRFAYWRNHI---------LVTILAALGIAPKGTVGVHDMLFKTAD 331
           A+    PW+  L  G       H             +L  + +AP G+   +  L   A 
Sbjct: 270 AETSELPWYLPLSSGVSITGFLHTGVGRYLTGKFTQLLEIVKLAPAGSYNTNVWLQNAAT 329

Query: 332 YLTRGGETGIFTPMHMVLLRKP 353
           +L +GGE  IF+PM  +L RKP
Sbjct: 330 FLVQGGEKQIFSPMFFLLCRKP 351

Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
163955690	361	24-sterol C-methyltransferase [Gossypium	0.997	0.991	0.878	0.0
255539070	361	s-adenosyl-l-methionine:delta24-sterol-C	0.997	0.991	0.874	0.0
163955692	361	24-sterol C-methyltransferase [Gossypium	1.0	0.994	0.858	0.0
356517628	363	PREDICTED: 24-methylenesterol C-methyltr	0.986	0.975	0.861	0.0
359807409	361	24-methylenesterol C-methyltransferase 2	0.986	0.980	0.856	0.0
242755468	363	sterol 24-C methyltransferase 2-2 [Glyci	0.986	0.975	0.859	0.0
225459762	360	PREDICTED: 24-methylenesterol C-methyltr	0.983	0.980	0.855	0.0
147811090	360	hypothetical protein VITISV_041951 [Viti	0.983	0.980	0.855	0.0
15217917	361	24-methylenesterol C-methyltransferase 2	1.0	0.994	0.830	0.0
224085956	364	predicted protein [Populus trichocarpa]	0.983	0.969	0.853	0.0

>gi|163955690|gb|ABY49843.1| 24-sterol C-methyltransferase [Gossypium hirsutum]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/361 (87%), Positives = 341/361 (94%), Gaps = 3/361 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL+LFCTGALLAGGLYWFVCVLGPAEQKGKRAV+LSGGSISAE+V DNYK+YW FF+R
Sbjct: 1   MDSLSLFCTGALLAGGLYWFVCVLGPAEQKGKRAVDLSGGSISAEKVRDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDRILDVGCGVGGPMRAIAAHS+A VVGITIN+YQVNRAR+HNKKAGLDSLCEVVCG
Sbjct: 121 VKPGDRILDVGCGVGGPMRAIAAHSQAKVVGITINDYQVNRARMHNKKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF+DN FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT+KY A+N 
Sbjct: 181 NFLEMPFQDNSFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTEKYRADNP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLRSY++I E AK+VGFEVVKEKDLAKPP+ PWWTRLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRSYSDIAEAAKKVGFEVVKEKDLAKPPSLPWWTRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH--PPK 357
           WRNHILV +LAA+GIAPKGTV VHDMLFKTADYLTRGG++GIF+PMHM+LLRKP   P K
Sbjct: 301 WRNHILVIVLAAIGIAPKGTVDVHDMLFKTADYLTRGGDSGIFSPMHMILLRKPKEAPSK 360

Query: 358 S 358
           S
Sbjct: 361 S 361

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539070|ref|XP_002510600.1| s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative [Ricinus communis] gi|223551301|gb|EEF52787.1| s-adenosyl-l-methionine:delta24-sterol-C-methyltransferase, putative [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/359 (87%), Positives = 336/359 (93%), Gaps = 1/359 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDS +LFCTGALLA GLYWFVC+LGPAE KGKRAV+LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDSFSLFCTGALLAVGLYWFVCILGPAEVKGKRAVDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPS+PGKSHRDATRLHEEMAVDLID
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSVPGKSHRDATRLHEEMAVDLID 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG
Sbjct: 121 VKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF DN FDGAYSIEATCHAPKLE+VYAE+FRVLKPGSLYVSYEWVTTDKY A + 
Sbjct: 181 NFLEMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYRASDS 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV+IIQGIERGDALPGLR+Y +I E A++VGFEVVKEKDLAKPPAQPWWTRLKMGR AY
Sbjct: 241 EHVEIIQGIERGDALPGLRNYIDIAETARKVGFEVVKEKDLAKPPAQPWWTRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKS 358
           WRNHILVT+L+A+GIAPKGTV VH+MLFKTADYLTRGGETGIFTPMHM+L RKP    S
Sbjct: 301 WRNHILVTMLSAIGIAPKGTVDVHEMLFKTADYLTRGGETGIFTPMHMILCRKPEKKPS 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163955692|gb|ABY49844.1| 24-sterol C-methyltransferase [Gossypium hirsutum]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/361 (85%), Positives = 339/361 (93%), Gaps = 2/361 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MD + LFCTGALLA GLYWFVC+LGPAEQKGKRAV+LSGGSISAE+V+DNYK+YW FF++
Sbjct: 1   MDPVGLFCTGALLACGLYWFVCLLGPAEQKGKRAVDLSGGSISAEKVQDNYKQYWSFFRQ 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI GKSHRDATRLHEEMAVDLI+
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIRGKSHRDATRLHEEMAVDLIE 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDR+LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG
Sbjct: 121 VKPGDRVLDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF+DN FDGAYSIEATCHAPKLE+VYAEVFRVLKPGSLYVSYEWVTTD+Y  +N 
Sbjct: 181 NFLEMPFKDNTFDGAYSIEATCHAPKLEEVYAEVFRVLKPGSLYVSYEWVTTDRYRGDNP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLR+Y +I E+AK+VGFEVVKEKDLAKPPA PWWTRLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRNYKDIAEVAKKVGFEVVKEKDLAKPPALPWWTRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH-PPKS 358
           WRNHILVT+LA++GIAPKGTV VH+MLFKTADYLTRGG++GIF+PMHM+LLRKP  PP  
Sbjct: 301 WRNHILVTVLASIGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILLRKPQVPPTQ 360

Query: 359 S 359
           S
Sbjct: 361 S 361

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517628|ref|XP_003527489.1| PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Glycine max]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/355 (86%), Positives = 336/355 (94%), Gaps = 1/355 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL+LFCTGALLAGGLYWFVCVLGPAEQKGKRA +LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDSLSLFCTGALLAGGLYWFVCVLGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T +KVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHR+ATRLHEEMAVDLI+
Sbjct: 61  PKEIETADKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHREATRLHEEMAVDLIE 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
            K G++ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR+HNKKAGLDSLCEVVCG
Sbjct: 121 AKPGNKILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARMHNKKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFLKMPF DN FDGAYSIEATCHAPKLE+VYAE+FRVLKPG+LYVSYEWVTTDKY  ++ 
Sbjct: 181 NFLKMPFVDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTDKYSGDDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLRSYAEI E A++VGF VVKE+DLAKPPA PWW+RLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRSYAEIAETARKVGFAVVKERDLAKPPALPWWSRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354
           WRNHI+VT+LAALGIAPKGTV VH+MLFKTADYLTRGG++GIF+PMHM+L RKPH
Sbjct: 301 WRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILCRKPH 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807409|ref|NP_001241131.1| 24-methylenesterol C-methyltransferase 2-like [Glycine max] gi|242755433|gb|ACS93763.1| sterol 24-C methyltransferase 2-1 [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/355 (85%), Positives = 335/355 (94%), Gaps = 1/355 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MD L+LFCTGALLAGGLYWFVCVLGPAEQKGKRA +LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDPLSLFCTGALLAGGLYWFVCVLGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T +KVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLI+
Sbjct: 61  PKEIETADKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIE 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
            K G+RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR+HNKKAGL+SLCEVVCG
Sbjct: 121 AKPGNRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARMHNKKAGLESLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFLKMPF DN FDGAYSIEATCHAPKLE+VYAE+FRVLKPG+LYVSYEWVTTDKY  ++ 
Sbjct: 181 NFLKMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTDKYRGDDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLR+Y +I E A++VGF VVKE+DLAKPPAQPWW+RLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRNYTDIAETARKVGFAVVKERDLAKPPAQPWWSRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354
           WRNHI+VT+LAALGIAPKGTV VH+MLFKTADYLTRGG++GIF+PMHM+L RKPH
Sbjct: 301 WRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILCRKPH 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242755468|gb|ACS93764.1| sterol 24-C methyltransferase 2-2 [Glycine max]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/355 (85%), Positives = 335/355 (94%), Gaps = 1/355 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL+LFCTGALLAGGLYWFVCVLGPAEQKGKRA +LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDSLSLFCTGALLAGGLYWFVCVLGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T +KVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHR+ATRLHEEMAVDLI+
Sbjct: 61  PKEIETADKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHREATRLHEEMAVDLIE 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
            K G++ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR+HNKKAGLDSLCE VCG
Sbjct: 121 AKPGNKILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARMHNKKAGLDSLCEGVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFLKMPF DN FDGAYSIEATCHAPKLE+VYAE+FRVLKPG+LYVSYEWVTTDKY  ++ 
Sbjct: 181 NFLKMPFVDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTDKYSGDDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLRSYAEI E A++VGF VVKE+DLAKPPA PWW+RLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRSYAEIAETARKVGFAVVKERDLAKPPALPWWSRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH 354
           WRNHI+VT+LAALGIAPKGTV VH+MLFKTADYLTRGG++GIF+PMHM+L RKPH
Sbjct: 301 WRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILCRKPH 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459762|ref|XP_002285903.1| PREDICTED: 24-methylenesterol C-methyltransferase 2 [Vitis vinifera]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/354 (85%), Positives = 330/354 (93%), Gaps = 1/354 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL LFCT ALLAGGLYWFVC+LG AEQ GKR V+LSGGSISAE+V+D YK+YW FF+R
Sbjct: 1   MDSLTLFCTAALLAGGLYWFVCILGSAEQTGKRGVDLSGGSISAEKVQDKYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP++PGKSHRDATRLHEEMAVDLID
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLID 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN+KAGLDSLCEVVCG
Sbjct: 121 VKPGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF DN FDGAYSIEATCHAP+LE+VYAE+FRVLKPGS+YVSYEWVTTDK++AE+ 
Sbjct: 181 NFLQMPFADNSFDGAYSIEATCHAPELEEVYAEIFRVLKPGSMYVSYEWVTTDKFKAEDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHVD+IQGIERGDALPGLR Y++I   A++VGFEVV+EKDLAKPPA PWWTRLKMGR AY
Sbjct: 241 EHVDVIQGIERGDALPGLRPYSDIAATARKVGFEVVREKDLAKPPAMPWWTRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           WRNHIL+ I AALGIAPKGTV VH+MLFKTADYLTRGGE+GIFTPMHM+L RKP
Sbjct: 301 WRNHILIMIFAALGIAPKGTVDVHEMLFKTADYLTRGGESGIFTPMHMILCRKP 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811090|emb|CAN67923.1| hypothetical protein VITISV_041951 [Vitis vinifera]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/354 (85%), Positives = 329/354 (92%), Gaps = 1/354 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL LFCT ALLAGGLYWFVC+LG AEQ GKR V+LSGGSISAE+V+D YK+YW FF+R
Sbjct: 1   MDSLTLFCTAALLAGGLYWFVCILGSAEQTGKRGVDLSGGSISAEKVQDKYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP++PGKSHRDATRLHEEMAVDLID
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLID 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN+KAGLDSLCEVVCG
Sbjct: 121 VKXGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF DN FDGAYSIEATCHAP+LE+VYAE+FRVLKPGS+YVSYEWVTTDK++AE+ 
Sbjct: 181 NFLQMPFADNSFDGAYSIEATCHAPELEEVYAEIFRVLKPGSMYVSYEWVTTDKFKAEDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHVD+IQGIERGDALPGLR Y++I   A++VGFEVV EKDLAKPPA PWWTRLKMGR AY
Sbjct: 241 EHVDVIQGIERGDALPGLRPYSDIAATARKVGFEVVXEKDLAKPPAMPWWTRLKMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           WRNHIL+ I AALGIAPKGTV VH+MLFKTADYLTRGGE+GIFTPMHM+L RKP
Sbjct: 301 WRNHILIMIFAALGIAPKGTVDVHEMLFKTADYLTRGGESGIFTPMHMILCRKP 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217917|ref|NP_173458.1| 24-methylenesterol C-methyltransferase 2 [Arabidopsis thaliana] gi|62900893|sp|Q39227.2|SMT2_ARATH RecName: Full=24-methylenesterol C-methyltransferase 2; Short=24-sterol C-methyltransferase 2; Short=Sterol-C-methyltransferase 2; AltName: Full=Protein COTYLEDON VASCULAR PATTERN 1 gi|9558593|gb|AAF88156.1|AC026234_7 Identical to 24-sterol C-methyltransferase from Arabidopsis thaliana gi|2129517 and is a member of the ubiE/COQ5 methyltransferase family PF|01209. ESTs gb|T42228, gb|T46520, gb|T41746, gb|N38458, gb|AI993515, gb|AA389843, gb|AI099890, gb|AI099653 come from this gene [Arabidopsis thaliana] gi|12083242|gb|AAG48780.1|AF332417_1 putative sterol-C-methyltransferase [Arabidopsis thaliana] gi|15028255|gb|AAK76716.1| putative sterol-C-methyltransferase [Arabidopsis thaliana] gi|21281107|gb|AAM45009.1| putative sterol-C-methyltransferase [Arabidopsis thaliana] gi|332191841|gb|AEE29962.1| 24-methylenesterol C-methyltransferase 2 [Arabidopsis thaliana]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/360 (83%), Positives = 337/360 (93%), Gaps = 1/360 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+R
Sbjct: 1   MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRR 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI 
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQ 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCG
Sbjct: 121 VKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVTT+K++AE+ 
Sbjct: 181 NFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEKFKAEDD 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLR+Y +I E AK+VGFE+VKEKDLA PPA+PWWTRLKMGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWTRLKMGRLAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS 359
           WRNHI+V IL+A+G+APKGTV VH+MLFKTADYLTRGGETGIF+PMHM+L RKP  P+ S
Sbjct: 301 WRNHIVVQILSAVGVAPKGTVDVHEMLFKTADYLTRGGETGIFSPMHMILCRKPESPEES 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085956|ref|XP_002307753.1| predicted protein [Populus trichocarpa] gi|118482368|gb|ABK93107.1| unknown [Populus trichocarpa] gi|222857202|gb|EEE94749.1| predicted protein [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/354 (85%), Positives = 335/354 (94%), Gaps = 1/354 (0%)

Query: 1   MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
           MDSLALFCTGAL+AGG+YWFVC+LGPAEQKGKRAV+LSGGSISAE+V+DNYK+YW FF+ 
Sbjct: 1   MDSLALFCTGALIAGGIYWFVCILGPAEQKGKRAVDLSGGSISAEKVQDNYKQYWSFFRS 60

Query: 61  PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
           PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH +ATRLHEEMAVDLI+
Sbjct: 61  PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHLEATRLHEEMAVDLIN 120

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           VK GDRILDVGCGVGGPMRAIAAHSRA VVGITIN+YQV+RAR HNKKAGLDSLCEVV G
Sbjct: 121 VKPGDRILDVGCGVGGPMRAIAAHSRAKVVGITINDYQVSRARTHNKKAGLDSLCEVVQG 180

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           NFL+MPF +N FDGAYSIEATCHAPKLE+VYAE+FRVLKPGSLYVSYEWVTTDKY++ + 
Sbjct: 181 NFLEMPFPENSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGSLYVSYEWVTTDKYKSSDP 240

Query: 240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
           EHV++IQGIERGDALPGLR+Y++I E A++VGFEVVKEKDLAKPPAQPWWTRL+MGR AY
Sbjct: 241 EHVEVIQGIERGDALPGLRNYSDIAETARKVGFEVVKEKDLAKPPAQPWWTRLQMGRIAY 300

Query: 300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
           WRNHI+VTIL+ALGIAPKGTV VH+MLFKTADYLT+GG+TGIFTPMHM+L RKP
Sbjct: 301 WRNHIVVTILSALGIAPKGTVDVHEMLFKTADYLTKGGDTGIFTPMHMILCRKP 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2012938	361	SMT2 "sterol methyltransferase	1.0	0.994	0.830	7.2e-171
TAIR|locus:2199777	359	SMT3 "sterol methyltransferase	0.983	0.983	0.790	7.3e-162
TAIR|locus:2173229	336	SMT1 "sterol methyltransferase	0.888	0.949	0.408	6.7e-65
UNIPROTKB|Q5EN22	390	ERG6 "Sterol 24-C-methyltransf	0.768	0.707	0.418	3.3e-63
SGD|S000004467	383	ERG6 "Delta(24)-sterol C-methy	0.757	0.710	0.408	9.9e-62
DICTYBASE|DDB_G0288907	354	smt1 "putative delta-24-sterol	0.860	0.872	0.403	3.9e-60
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.721	0.685	0.402	4.8e-60
CGD|CAL0006397	376	ERG6 [Candida albicans (taxid:	0.688	0.656	0.424	3.3e-59
UNIPROTKB|O74198	376	ERG6 "Sterol 24-C-methyltransf	0.688	0.656	0.424	3.3e-59
ASPGD|ASPL0000068274	377	AN7146 [Emericella nidulans (t	0.752	0.716	0.379	7.8e-58

TAIR|locus:2012938 SMT2 "sterol methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1661 (589.8 bits), Expect = 7.2e-171, P = 7.2e-171
 Identities = 299/360 (83%), Positives = 337/360 (93%)

Query:     1 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
             MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+R
Sbjct:     1 MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRR 60

Query:    61 PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
             PKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI 
Sbjct:    61 PKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQ 120

Query:   120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
             VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCG
Sbjct:   121 VKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCG 180

Query:   180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
             NFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVTT+K++AE+ 
Sbjct:   181 NFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEKFKAEDD 240

Query:   240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
             EHV++IQGIERGDALPGLR+Y +I E AK+VGFE+VKEKDLA PPA+PWWTRLKMGR AY
Sbjct:   241 EHVEVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWTRLKMGRLAY 300

Query:   300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPPKSS 359
             WRNHI+V IL+A+G+APKGTV VH+MLFKTADYLTRGGETGIF+PMHM+L RKP  P+ S
Sbjct:   301 WRNHIVVQILSAVGVAPKGTVDVHEMLFKTADYLTRGGETGIFSPMHMILCRKPESPEES 360

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0007389 "pattern specification process" evidence=IMP

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA;TAS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=IDA;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2199777 SMT3 "sterol methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 280/354 (79%), Positives = 322/354 (90%)

Query:     1 MDSLALFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKR 60
             MDS+AL+CT  L+AG +YWF+CVLGPAE+KGKRA +LSGGSISAE+V+DNY +YW FF++
Sbjct:     1 MDSVALYCTAGLIAGAVYWFICVLGPAERKGKRASDLSGGSISAEKVKDNYNQYWSFFRK 60

Query:    61 PKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
             PKE  + EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP +PGKS +DATR+HEEMAVDLI 
Sbjct:    61 PKEIESAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIK 120

Query:   120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
             VK G +ILD GCGVGGPMRAIAAHS+A V GITINEYQV RA+LHNKKAGLDSLC VVCG
Sbjct:   121 VKPGQKILDAGCGVGGPMRAIAAHSKAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCG 180

Query:   180 NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
             NFLKMPF++N FDGAYSIEATCHAPKLE+VY+E+FRV+KPGSL+VSYEWVTT+KY  +++
Sbjct:   181 NFLKMPFDENTFDGAYSIEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWVTTEKYRDDDE 240

Query:   240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY 299
             EH D+IQGIERGDALPGLRSYA+I   AK+VGFEVVKEKDLAKPP++PWW RLKMGR AY
Sbjct:   241 EHKDVIQGIERGDALPGLRSYADIAVTAKKVGFEVVKEKDLAKPPSKPWWNRLKMGRIAY 300

Query:   300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
             WRNH++V IL+A+G+APKGTV VH MLFKTADYLTRGGETGIF+PMHM+L RKP
Sbjct:   301 WRNHVVVVILSAIGVAPKGTVDVHKMLFKTADYLTRGGETGIFSPMHMILCRKP 354

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA;TAS

GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=TAS

TAIR|locus:2173229 SMT1 "sterol methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 136/333 (40%), Positives = 191/333 (57%)

Query:    34 AVNLSGGSISAEEV---EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQ 90
             A NL GG I   +V    + Y++Y  F    +E  K    D V+ +Y+L T  YE+GWG+
Sbjct:     4 ASNL-GGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGE 62

Query:    91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG 150
             SFHF+    G+S R++ + HE      + ++ G ++LDVGCG+GGP+R IA  S + V G
Sbjct:    63 SFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTG 122

Query:   151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVY 210
             +  NEYQ+ R +  N+ AG+D  C  V  +F+KMPF +N FD  Y+IEATCHAP     Y
Sbjct:   123 LNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCY 182

Query:   211 AEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV 270
              E++RVLKPG  + +YEW  TD ++ +N EH  I   IE GD LP +R   +  E  K+ 
Sbjct:   183 KEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIRLTTKCLEALKQA 242

Query:   271 GFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI----------LVTILAALGIAPKGTV 320
             GFEV+ EKDLAK    PW+  L    F+     +          +V IL  + +AP+G+ 
Sbjct:   243 GFEVIWEKDLAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQGSQ 302

Query:   321 GVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
              V + L + A+ L  GG   IFTPM+  L RKP
Sbjct:   303 RVSNFLEQAAEGLVDGGRREIFTPMYFFLARKP 335

GO:0005737 "cytoplasm" evidence=ISM

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IGI;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA;IMP;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5EN22 ERG6 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 555 (200.4 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 120/287 (41%), Positives = 160/287 (55%)

Query:    49 DNYKEYWKFFKRPKETTK---EKVPDFVDT---FYNLVTDIYEWGWGQSFHFSPSIPGKS 102
             D Y  +W       ETTK   E+  D+      +YNLVTD YE+GWGQSFHF    PG++
Sbjct:    55 DQYFRHWDGKTAKTETTKVREERKADYATLTRQYYNLVTDFYEYGWGQSFHFCTFAPGET 114

Query:   103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
                A   +E      I +K G ++LD+GCGVGGP R IA  + AN+ GITINEYQV RAR
Sbjct:   115 FASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERAR 174

Query:   163 LHNKKAGLDS--LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
              + +  G  +    + V G+F+ +PFE   FD  YSIEAT HAPKLEDVY ++F VLKPG
Sbjct:   175 RYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLKPG 234

Query:   221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
              ++  YEWV TD Y+  +  H +I  GIE G  +  L++        K  GFE+++ +DL
Sbjct:   235 GIFGLYEWVMTDAYDENDPHHKEIRFGIEHGGGIANLQTAQTAIAAIKAAGFELLESEDL 294

Query:   281 A-KPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDML 326
             A      PW+  L  G  A+        IL+   + P G    H +L
Sbjct:   295 ADNSDRAPWYWPL--GGNAWQYASTFGDILSTFTMTPAGRAIAHTVL 339

GO:0005575 "cellular_component" evidence=ND

SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 554 (200.1 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 114/279 (40%), Positives = 162/279 (58%)

Query:    28 EQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVD---TFYNLVTDIY 84
             ++ G  A+     S   E V+  Y   W   +  K+  + ++ D+ +   ++YN+VTD Y
Sbjct:    24 KKTGLSALMSKNNSAQKEAVQ-KYLRNWDG-RTDKDAEERRLEDYNEATHSYYNVVTDFY 81

Query:    85 EWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS 144
             E+GWG SFHFS    G+S   +   HE        ++ GD +LDVGCGVGGP R IA  +
Sbjct:    82 EYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFT 141

Query:   145 RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP 204
               NV+G+  N+YQ+ +A+ + KK  L    + V G+F+KM FE+N FD  Y+IEATCHAP
Sbjct:   142 GCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAP 201

Query:   205 KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT 264
             KLE VY+E+++VLKPG  +  YEWV TDKY+  N EH  I   IE GD +P +       
Sbjct:   202 KLEGVYSEIYKVLKPGGTFAVYEWVMTDKYDENNPEHRKIAYEIELGDGIPKMFHVDVAR 261

Query:   265 EIAKRVGFEVVKEKDLAKPPAQ-PWWTRLKMGRFAYWRN 302
             +  K  GFEV+  +DLA    + PW+  L  G + Y +N
Sbjct:   262 KALKNCGFEVLVSEDLADNDDEIPWYYPLT-GEWKYVQN 299

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

DICTYBASE|DDB_G0288907 smt1 "putative delta-24-sterol methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 130/322 (40%), Positives = 183/322 (56%)

Query:    45 EEVEDNYKEYWKFFK----RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG 100
             ++V+D    Y + FK    +  +  K      V+TFY+L TD YE+GWGQSFHF+     
Sbjct:    30 DKVDDTLNGYKELFKGNDDKAIQARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKY 89

Query:   101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
             +S   +   HE      + +  G +++D+GCGVGGPMR IA  S ANVVG+  NEYQ+ R
Sbjct:    90 ESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQR 149

Query:   161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
              +  N+ AGL  LC  +  +F+ +P EDN +D AY IEATCHAP L  +Y EVFR++KPG
Sbjct:   150 GKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPG 209

Query:   221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
              L+  YEW+ T+K+  E+   V+I + IE G+ LP L   AEI   AK  GFEV+   D+
Sbjct:   210 GLFGGYEWIMTNKFNPEDPVEVNIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDV 269

Query:   281 AKPPAQPWWTRLKMG----RFAY-----WRNHILVTILAALGIAPKGTVGVHDMLFKTAD 331
             A+    PW+  L  G     F +     +       +L  + +AP G+   +  L   A 
Sbjct:   270 AETSELPWYLPLSSGVSITGFLHTGVGRYLTGKFTQLLEIVKLAPAGSYNTNVWLQNAAT 329

Query:   332 YLTRGGETGIFTPMHMVLLRKP 353
             +L +GGE  IF+PM  +L RKP
Sbjct:   330 FLVQGGEKQIFSPMFFLLCRKP 351

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 536 (193.7 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
 Identities = 110/273 (40%), Positives = 163/273 (59%)

Query:    31 GKRAVNLSG-GSISAEEVEDNYK---EYWKFFKRPKETTKE-----KVPDF---VDTFYN 78
             GK A   +G  +I++++V++  +   EY++F+ R  E   E     ++  +   V+++Y+
Sbjct:    21 GKAAEKKTGLAAIASKDVDEQSRKLQEYFEFWDRNHENESEEDRARRIDGYKSVVNSYYD 80

Query:    79 LVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMR 138
             L TD+YE+GW QSFHFS    G++   +   HE      + +K G R+LDVGCGVGGP R
Sbjct:    81 LATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAR 140

Query:   139 AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198
              I   +  N+VG+  N+YQ++R   +  K  LD     V G+F+ MPFEDN FD  Y+IE
Sbjct:   141 EITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFMHMPFEDNTFDYVYAIE 200

Query:   199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR 258
             AT HAP LE VY E+FRVLKPG ++  YEWV +D Y++   +H +I   IE GD +P + 
Sbjct:   201 ATVHAPSLEGVYGEIFRVLKPGGVFGVYEWVMSDDYDSSIPKHREIAYNIEVGDGIPQMV 260

Query:   259 SYAEITEIAKRVGFEVVKEKDLAKP--PAQPWW 289
                +  E  K+VGF +++E DL     P  PW+
Sbjct:   261 RKCDAVEAIKKVGFNLLEEDDLTDHDNPDLPWY 293

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

CGD|CAL0006397 ERG6 [Candida albicans (taxid:5476)]

 Score = 534 (193.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 106/250 (42%), Positives = 145/250 (58%)

Query:    43 SAEEVEDNYKEYWK--FFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG 100
             +A    + Y ++W     K  +E            +YNLVTD YE+GWG SFHFS    G
Sbjct:    41 AASVAAEGYFKHWDGGISKDDEEKRLNDYSQLTHHYYNLVTDFYEYGWGSSFHFSRYYKG 100

Query:   101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
             ++ R AT  HE      +++    ++LDVGCGVGGP R I   +   +VG+  N+YQ+ R
Sbjct:   101 EAFRQATARHEHFLAHKMNLNENMKVLDVGCGVGGPGREITRFTDCEIVGLNNNDYQIER 160

Query:   161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
             A  + KK  LD     V G+F++M FE   FD  Y+IEAT HAP LE VY+E+++VLKPG
Sbjct:   161 ANHYAKKYHLDHKLSYVKGDFMQMDFEPESFDAVYAIEATVHAPVLEGVYSEIYKVLKPG 220

Query:   221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
              ++  YEWV TDKY+  N+EH  I  GIE GD +P + S     +  K VGFE+  +KDL
Sbjct:   221 GIFGVYEWVMTDKYDETNEEHRKIAYGIEVGDGIPKMYSRKVAEQALKNVGFEIEYQKDL 280

Query:   281 AKPPAQ-PWW 289
             A    + PW+
Sbjct:   281 ADVDDEIPWY 290

GO:0006696 "ergosterol biosynthetic process" evidence=IGI

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IGI;ISS;IDA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0071210 "protein insertion into membrane raft" evidence=IEA

UNIPROTKB|O74198 ERG6 "Sterol 24-C-methyltransferase" [Candida albicans SC5314 (taxid:237561)]

 Score = 534 (193.0 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 106/250 (42%), Positives = 145/250 (58%)

Query:    43 SAEEVEDNYKEYWK--FFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG 100
             +A    + Y ++W     K  +E            +YNLVTD YE+GWG SFHFS    G
Sbjct:    41 AASVAAEGYFKHWDGGISKDDEEKRLNDYSQLTHHYYNLVTDFYEYGWGSSFHFSRYYKG 100

Query:   101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
             ++ R AT  HE      +++    ++LDVGCGVGGP R I   +   +VG+  N+YQ+ R
Sbjct:   101 EAFRQATARHEHFLAHKMNLNENMKVLDVGCGVGGPGREITRFTDCEIVGLNNNDYQIER 160

Query:   161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
             A  + KK  LD     V G+F++M FE   FD  Y+IEAT HAP LE VY+E+++VLKPG
Sbjct:   161 ANHYAKKYHLDHKLSYVKGDFMQMDFEPESFDAVYAIEATVHAPVLEGVYSEIYKVLKPG 220

Query:   221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
              ++  YEWV TDKY+  N+EH  I  GIE GD +P + S     +  K VGFE+  +KDL
Sbjct:   221 GIFGVYEWVMTDKYDETNEEHRKIAYGIEVGDGIPKMYSRKVAEQALKNVGFEIEYQKDL 280

Query:   281 AKPPAQ-PWW 289
             A    + PW+
Sbjct:   281 ADVDDEIPWY 290

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IGI;IMP;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IGI

GO:0035690 "cellular response to drug" evidence=IMP

ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)]

 Score = 504 (182.5 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 107/282 (37%), Positives = 154/282 (54%)

Query:    27 AEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPD--------FVDTFYN 78
             A+ KG  A      + + +   D Y ++W    +  ET  E++ +            +YN
Sbjct:    26 AQAKGGFAAMRQKSAAAQKAAVDEYFKHWD--NKSAETETEEIREARRAEYATLTRHYYN 83

Query:    79 LVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMR 138
             L TD+YE+GWG SFHF     G+    A   HE      + +K G ++LDVGCGVGGP R
Sbjct:    84 LATDLYEYGWGTSFHFCRFAYGEPFYQAIARHEHYLAHQMGIKPGMKVLDVGCGVGGPAR 143

Query:   139 AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE 198
              I   + A+V G+  N+YQ+ RA  + ++ GL      V G+F++M F DN FD  Y+IE
Sbjct:   144 EIVKFTDAHVTGLNNNDYQIQRATRYAEREGLSHKLNFVKGDFMQMQFPDNSFDAVYAIE 203

Query:   199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR 258
             AT HAP+L  VY E+ RVLKPG ++  YEW+ TD Y+ +N EH  I  GIE+GD +  + 
Sbjct:   204 ATVHAPELAGVYKEIMRVLKPGGVFGVYEWLMTDAYDNDNPEHRKIRLGIEQGDGISNMV 263

Query:   259 SYAEITEIAKRVGFEVVKEKDLAKPPAQ-PWWTRLKMGRFAY 299
               +E     K  G E++  +DLA  P + PW+  L  G F +
Sbjct:   264 KVSEGLAAIKEAGLELLHHEDLADRPDEIPWYYPLA-GSFKH 304

GO:0016125 "sterol metabolic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0071210 "protein insertion into membrane raft" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82427	SMT2_ORYSJ	2, ., 1, ., 1, ., 1, 4, 3	0.7214	0.9832	0.9724	yes	no
O14321	ERG6_SCHPO	2, ., 1, ., 1, ., 4, 1	0.3757	0.8997	0.8544	yes	no
Q39227	SMT2_ARATH	2, ., 1, ., 1, ., 1, 4, 3	0.8305	1.0	0.9944	yes	no
Q94JS4	SMT3B_ARATH	2, ., 1, ., 1, ., 1, 4, 3	0.7909	0.9832	0.9832	no	no
Q6BRB7	ERG6_DEBHA	2, ., 1, ., 1, ., 4, 1	0.3890	0.9025	0.8594	yes	no
Q54I98	SMT1_DICDI	2, ., 1, ., 1, ., 4, 1	0.4037	0.8607	0.8728	yes	no
Q6FRZ7	ERG6_CANGA	2, ., 1, ., 1, ., 4, 1	0.3778	0.9192	0.8870	yes	no
P25087	ERG6_YEAST	2, ., 1, ., 1, ., 4, 1	0.3848	0.8941	0.8381	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
3rd Layer	2.1.1.143	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015513001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (360 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024612001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (222 aa)						•	•		0.908
	GSVIVG00024234001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (271 aa)						•			0.899
	GSVIVG00018422001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (273 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
PLN02244	340	PLN02244, PLN02244, tocopherol O-methyltransferase	2e-25
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	4e-23
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	7e-18
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-17
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-16
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	2e-15
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	4e-15
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	5e-15
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	5e-14
pfam02353	273	pfam02353, CMAS, Mycolic acid cyclopropane synthet	1e-13
pfam08498	67	pfam08498, Sterol_MT_C, Sterol methyltransferase C	4e-13
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	5e-11
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-09
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	2e-09
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-09
PTZ00098	263	PTZ00098, PTZ00098, phosphoethanolamine N-methyltr	2e-08
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	4e-08
PLN02336	475	PLN02336, PLN02336, phosphoethanolamine N-methyltr	6e-08
smart00828	224	smart00828, PKS_MT, Methyltransferase in polyketid	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-07
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	7e-07
COG1041	347	COG1041, COG1041, Predicted DNA modification methy	8e-07
PRK11705	383	PRK11705, PRK11705, cyclopropane fatty acyl phosph	1e-06
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	1e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	2e-05
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-05
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-05
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	4e-05
PLN02396	322	PLN02396, PLN02396, hexaprenyldihydroxybenzoate me	9e-05
TIGR01177	329	TIGR01177, TIGR01177, TIGR01177 family protein	1e-04
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	2e-04
PRK13168	443	PRK13168, rumA, 23S rRNA m(5)U1939 methyltransfera	2e-04
pfam01170	172	pfam01170, UPF0020, Putative RNA methylase family	2e-04
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	2e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	2e-04
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	3e-04
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	6e-04
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	0.002
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	0.002
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	0.003
COG2521	287	COG2521, COG2521, Predicted archaeal methyltransfe	0.003

>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase

 Score =  104 bits (261), Expect = 2e-25
 Identities = 69/241 (28%), Positives = 105/241 (43%), Gaps = 12/241 (4%)

Query: 60  RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFH---FSPSIPGKSHRDA-TRLHEEM-- 113
            P       + + +  FY+  + ++E  WG+  H   + P      HR A  R+ EE   
Sbjct: 48  SPAPAATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLA 107

Query: 114 --AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
              V   D K   RI+DVGCG+GG  R +A    ANV GIT++  Q  RA       GL 
Sbjct: 108 WAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS 167

Query: 172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231
                   + L  PFED  FD  +S+E+  H P       E+ RV  PG   +   W   
Sbjct: 168 DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHR 227

Query: 232 DKYEAEN---KEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPW 288
           D    E     +   ++  I     LP   S ++  ++A+ +G + +K +D ++  A P+
Sbjct: 228 DLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVA-PF 286

Query: 289 W 289
           W
Sbjct: 287 W 287

Length = 340

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 91.6 bits (228), Expect = 4e-23
 Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186
           LDVGCG G    A+A    A V G+ ++   +  AR            + V G+   +PF
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAEDLPF 53

Query: 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
            D  FD   S     H P  E    E+ RVLKPG   V
Sbjct: 54  PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 81.5 bits (202), Expect = 7e-18
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL 170
              + L+ +K GD++LDV CG G     +A       VVG+ I+E  +  AR   KK G+
Sbjct: 41  RALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV 100

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
               E V G+   +PF DN FD         +   ++    E++RVLKPG
Sbjct: 101 -QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149

Length = 238

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAG 169
               +L+ V+ GDR+LDVGCG G   R +A        VVGI  +E  +  A+   + AG
Sbjct: 9   ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK--ERAAG 66

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
           L    E V G+   +PF D  FD   S     H        AE+ RVL+PG
Sbjct: 67  LGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178
           K+G ++LD+GCG G     +A      A VVGI I+E  + +A+ + KK G ++  E + 
Sbjct: 2   KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQ 60

Query: 179 GNFLKMP---FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
           G+  ++P    EDN FD   S E   H P  + V  E+ RVLKPG + +
Sbjct: 61  GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)

Query: 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQVNRARLHNKKAGL 170
             +  + V+ GD++LD+ CG G    A+A        VVG+  +E  +   R   +  GL
Sbjct: 42  KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL 101

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA------PKLEDVYAEVFRVLKPG 220
               E V G+   +PF DN FD A +I     A      P ++    E++RVLKPG
Sbjct: 102 SGNVEFVQGDAEALPFPDNSFD-AVTI-----AFGLRNVPDIDKALREMYRVLKPG 151

Length = 239

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 26/194 (13%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHN 165
           RL    AV LI V  G ++LDV CG G     +A     R  V G+  +   +  A+   
Sbjct: 25  RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK--- 81

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
           KK+ L    E +  +   +PFEDN FD    A+ +       K      E++RVLKPG  
Sbjct: 82  KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK---ALREMYRVLKPGGR 138

Query: 223 YVSYEWVTTDK------YEAENKEHVDIIQGIERGDA-----LP----GLRSYAEITEIA 267
            V  E+           Y+   K  +  I G+   +A     LP       S  E+  + 
Sbjct: 139 LVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198

Query: 268 KRVGFEVVKEKDLA 281
           K  GFE V+ + L 
Sbjct: 199 KEAGFEEVRYRSLT 212

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 69.8 bits (171), Expect = 5e-15
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
           R+LD+GCG G    A+A+   A V G+ I+   +  AR     A L    EV+ G+  ++
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59

Query: 185 PF-EDNHFDGAYSIEATCHAPKL-EDVYAEVFRVLKP-GSLYVSYEWV 229
           P   D  FD   S     H  +       E  R+LKP G L ++    
Sbjct: 60  PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 18/186 (9%)

Query: 104 RDATRLHE------EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
                L E      ++ ++ + +K G  +LD+GCG GG     A      VVG+T++E Q
Sbjct: 48  DPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ 107

Query: 158 VNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-APKLEDVY-AEVFR 215
           +  A       GL+   EV           +  FD   S+    H   +  D +  +V+ 
Sbjct: 108 LAYAEKRIAARGLEDNVEVR---LQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYA 164

Query: 216 VLKPGSLYVSYEWVTTD-KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV 274
           +LKPG   + +     D ++         I + I  G  LP +    EI E+A   GF V
Sbjct: 165 LLKPGGRMLLHSITGPDQEFRRFPDF---IDKYIFPGGELPSIS---EILELASEAGFVV 218

Query: 275 VKEKDL 280
           +  + L
Sbjct: 219 LDVESL 224

Length = 283

>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 22/190 (11%)

Query: 104 RDATRLHE------EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
           R    L E      ++ +D + +K G  +LD+GCG GG MR  A     NVVG+T+++ Q
Sbjct: 38  RPDMTLEEAQQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQ 97

Query: 158 VNRARLHNKKAGLDSLCEVVCGNFLKMPFED--NHFDGAYSIEATCHAPK--LEDVYAEV 213
              AR      GL    EV     L   + D    FD   S+    H      +  + ++
Sbjct: 98  YKHARQRVAAEGLQRKVEV-----LLQDYRDFDEPFDRIVSVGMFEHVGHENYDTFFKKL 152

Query: 214 FRVLKPGSLYVSYEWVTTDKYEAENKEHVD---IIQGIERGDALPGLRSYAEITEIAKRV 270
           + +L PG L + +        E  ++  +    I + I  G  LP +     I E +   
Sbjct: 153 YNLLPPGGLMLLHTITGLHPDET-SERGLPLKFIDKYIFPGGELPSIS---MIVESSSEA 208

Query: 271 GFEVVKEKDL 280
           GF V   + L
Sbjct: 209 GFTVEDVESL 218

This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273

>gnl|CDD|149521 pfam08498, Sterol_MT_C, Sterol methyltransferase C-terminal

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 290 TRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVL 349
           T  +  R   +  H +V  L  +G+APKG+  V D L   A+ L  GG+  +FTPM + +
Sbjct: 3   TIFRTTRVGRFITHNMVGALEKIGLAPKGSKKVTDALEVAAEGLVAGGKKKLFTPMFLFV 62

Query: 350 LRKPH 354
            RKP 
Sbjct: 63  ARKPE 67

This domain is found to the C-terminus of a methyltransferase domain (pfam08241) in fungal and plant sterol methyltransferases. Length = 67

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 127 LDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLD--SLCEVVCGNFLK 183
           LD+GCG G  +RA+          G+ I+   +  A       GL       +   + + 
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
           +      FD   +     H      V   + R+LKPG
Sbjct: 61  LDPG--SFDVVVASNVLHHLADPRAVLRNLRRLLKPG 95

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
           ILD+GCG G  +RA+A    ++V G+ I++  +  A+   +  G       V  +   +P
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLP 58

Query: 186 FEDNHFDGAYSIEATCHA---PKLEDVYAEVFRVLKPG 220
           FE+  FD       +       +L  +  E  R+L+PG
Sbjct: 59  FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPG 96

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHN 165
           RL ++  +  + VK G++ LDV  G G     ++    S   VVG+ INE  +       
Sbjct: 33  RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKA 92

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
           K+ G  ++ E + GN  ++PFED+ FD    ++ +       K   V  E FRVLKPG  
Sbjct: 93  KEEGKYNI-EFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLK---VLKEAFRVLKPGGR 148

Query: 223 YVSYE 227
            V  E
Sbjct: 149 VVCLE 153

Length = 233

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 123 GDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181
           GDR+LD G G G  + A A     A VVG+ ++      AR     AGL     VV G+ 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 182 LKMP-FEDNHFDGAYS----IEATCHAPKLEDVYAEVF----RVLKPG 220
            ++    D  FD                   D+Y        R+LKPG
Sbjct: 61  RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPG 108

This family contains methyltransferase domains. Length = 117

>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 22/180 (12%)

Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           I++    ++LD+G G+GG  + I     A+V G+ I E  VN A+L N      +  E  
Sbjct: 48  IELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFE 104

Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
             + LK  F +N FD  YS +A  H     D   ++ + ++ LKP  + +  ++      
Sbjct: 105 ANDILKKDFPENTFDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCADKIE 163

Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
            ++ E K ++      +R   L  ++ Y ++    K   F+ V  KD++      +W  L
Sbjct: 164 NWDEEFKAYIK-----KRKYTLIPIQEYGDLI---KSCNFQNVVAKDISD-----YWLEL 210

Length = 263

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 117 LIDVKAGDRILDVGCGVG--GPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
            ++V+AG   LDV CG        A A     +V+G+  +E  ++  R   K AGL ++ 
Sbjct: 40  RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNV- 98

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227
           E+V GN +++PF+DN FD         + P    V  E++RV+KPG   V  E
Sbjct: 99  ELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-GLDSL 173
           VD +D+K G ++LDVGCG+GG    +A +   +VVGI ++   VN      ++A G    
Sbjct: 259 VDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS---VNMISFALERAIGRKCS 315

Query: 174 CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
            E    +  K  + DN FD  YS +   H      ++   F+ LKPG
Sbjct: 316 VEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG 362

Length = 475

>gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 125 RILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
           R+LD GCG G  +  +A  H    + G TI+  Q    R   +  GL     +   +  K
Sbjct: 2   RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61

Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD 243
            PF D  +D  +  E   H     D+++ + R LK G   V  +++      A     ++
Sbjct: 62  DPFPDT-YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI------ANLLSAIE 114

Query: 244 IIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA 281
                E   +    R   E  E+  R    VV+  D +
Sbjct: 115 ----HEETTSYLVTRE--EWAELLARNNLRVVEGVDAS 146

Length = 224

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 122 AGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
            G R+LD+GCG G   +        A V G+ ++   +  AR  N K  L      V G+
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELAR-ENAKLALGPRITFVQGD 59

Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
                     FD   ++        L ++   +  +LKPG   V
Sbjct: 60  APDALDLLEGFD---AVFIGGGGGDLLELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           K G+ +LD+G G GG    +AA        V+G+ +    + +AR + +KAG  ++ E  
Sbjct: 76  KPGETVLDLGSG-GGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV-EFR 133

Query: 178 CGNFLKMPFEDNHFDGAYSIEATC---HAPKLEDVYAEVFRVLKP-GSLYVSYEWVTTDK 233
            G    +P  DN  D    I + C    +P  E V+ E FRVLKP G   +S + V   +
Sbjct: 134 LGEIEALPVADNSVD---VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS-DVVLRGE 189

Query: 234 YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276
              E +   ++  G      + G     E   +    GF  + 
Sbjct: 190 LPEEIRNDAELYAG-----CVAGALQEEEYLAMLAEAGFVDIT 227

Length = 272

>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair]

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           V+L  VK G+ +LD  CG GG +   A    A V+G  I+E  V  A+++ +  G++   
Sbjct: 190 VNLARVKRGELVLDPFCGTGG-ILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYP 248

Query: 175 EVVCGNFLKMPFEDNHFDGA-----YSIEATCHAPKLEDVYAEVF----RVLKPG 220
            +   +   +P  DN  D       Y          L+++Y E       VLKPG
Sbjct: 249 VLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303

Length = 347

>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 104 RDATRLHE--EMAVDLI----DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
           +DA  L E  E  +DLI     +K G R+LD+GCG GG  R  A H   +VVG+TI+  Q
Sbjct: 143 KDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQ 202

Query: 158 VNRARLHNKKAGLD 171
              A+     AGL 
Sbjct: 203 QKLAQERC--AGLP 214

Length = 383

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 48.0 bits (111), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 119 DVKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
            +  G  +LD+GCG G   + A      A VVG+ ++   +  AR   + AGL  +  VV
Sbjct: 45  LLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV 104

Query: 178 CGNF-LKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV 229
                  +PFED+            H         E+ RVLKPG   V  + +
Sbjct: 105 ADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157

Length = 257

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRA--RL 163
           R+ + MAV     K GDR+LD+ CG G     ++    S   V+G+  +  Q+  A  R 
Sbjct: 59  RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ 118

Query: 164 HNKKAGLDSLCEVVCGNFLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAEVFRVLKPG 220
             K        E + G+   +PF+D +FD     Y +       K      E++RVLKPG
Sbjct: 119 ELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLK---AMQEMYRVLKPG 175

Query: 221 S 221
           S
Sbjct: 176 S 176

Length = 261

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181
            G R+LDVGCG G     +A    A+V GI  +E  +  A+LH  ++G++   +      
Sbjct: 59  PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNI--DYRQATV 115

Query: 182 LKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP-GSLYVS 225
             +      FD    +E   H P  E       +++KP G L++S
Sbjct: 116 EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160

Length = 243

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN---VVGITINEYQVNRARLHNKKAGLDS 172
           +    K GDR+L+VG G G     +A  +  N   VVG+ IN Y V  A+ + K   + +
Sbjct: 17  ENAVDKKGDRVLEVGTGSG----IVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN 72

Query: 173 LC-EVVCGNFLKMPFEDNHFD 192
              EV+  +  + PF  + FD
Sbjct: 73  NGVEVIRSDLFE-PFRGDKFD 92

Length = 188

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 125 RILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
            +LD+GCG G   RA+     +A  +   I+   + +A+    +       + +CG+  K
Sbjct: 37  SVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----VQFICGDAEK 91

Query: 184 MPFEDNHFDGAYSIEAT--CHAPKLEDVYAEVFRVLKPGSL 222
           +P ED+ FD   S  A   C    L    +E+ RVLKPG L
Sbjct: 92  LPLEDSSFDLIVSNLALQWCD--DLSQALSELARVLKPGGL 130

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 37/163 (22%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
           K G R+LD+GCG  G +  +      +V G+  +   V    L +               
Sbjct: 21  KPGGRVLDIGCG-TGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVL-------- 71

Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSY-------EWVTTD 232
                     +D   + E   H P    +  ++  +LKPG  L +S              
Sbjct: 72  -------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFANW 124

Query: 233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
            Y      H+                    +  + ++ GFE+V
Sbjct: 125 HYLRPRNTHISFYSE-------------ESLKRLLEKAGFELV 154

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 14/135 (10%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           +K G  +LDVGCG G  + AIAA       VVG+ I+   V  AR + +  G++ L +  
Sbjct: 160 LKKGKTVLDVGCGSG--ILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217

Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS------LYVSYEWVTT 231
               L++P E+  FD    I A   A  L ++  ++ R+LKPG       +         
Sbjct: 218 GFLLLEVP-ENGPFDV---IVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVA 273

Query: 232 DKYEAENKEHVDIIQ 246
           + YE    E V++++
Sbjct: 274 EAYEQAGFEVVEVLE 288

Length = 300

>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase

 Score = 43.6 bits (102), Expect = 9e-05
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182
           G + +D+GCG GG +    A   A V G+   +  V  ARLH     + S  E +C    
Sbjct: 132 GLKFIDIGCG-GGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE 190

Query: 183 KMPFEDNHFDGAYSIEATCH 202
           K+  E   FD   S+E   H
Sbjct: 191 KLADEGRKFDAVLSLEVIEH 210

Length = 322

>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL 173
            V+L  V  GDR+LD  CG GG     A    A V+G  I+   V  AR++ +  G++  
Sbjct: 174 MVNLARVTEGDRVLDPFCGTGG-FLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDF 232

Query: 174 CEVVCGNFLKMPFEDNHFDGA-----YSIEATCHAPKLEDVYAEVF----RVLKPGSLYV 224
             V  G+  K+P      D       Y    T     LE +Y         VLK     V
Sbjct: 233 -FVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291

Query: 225 S 225
            
Sbjct: 292 Y 292

This family is found exclusively in the Archaea [Hypothetical proteins, Conserved]. Length = 329

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 14/111 (12%)

Query: 122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181
            G R+LDVGCG GG +    A   ANV GI  +E  +  A+LH KK  L  +       +
Sbjct: 45  FGLRVLDVGCG-GGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKI------EY 97

Query: 182 LKMPFED------NHFDGAYSIEATCHAPKLEDVYAEVFRVLKP-GSLYVS 225
                ED        FD    +E   H P  +       ++LKP G L+ S
Sbjct: 98  RCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 26/119 (21%)

Query: 88  WGQSFHFSPSIPGKSHRDATR----LHEEM---AVDLIDVKAGDRILDVGCGVGG---PM 137
           +G    FSP       RD  +    ++++M   A++ +D + GDR+LD+ CG+G    P+
Sbjct: 263 FGLRLAFSP-------RDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPL 315

Query: 138 RAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN----FLKMPFEDNHFD 192
               A   A VVG+   E  V RAR + ++ GLD++      N    F   P+    FD
Sbjct: 316 ----ARQAAEVVGVEGVEAMVERARENARRNGLDNV-TFYHANLEEDFTDQPWALGGFD 369

Length = 443

>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 115 VDLIDVKAGDRILDVGCGVGG-PMRA--IAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
           V+L   K GD +LD  CG G   + A  + A+  A + G  I+   V  AR++ + AG+ 
Sbjct: 21  VNLAGWKPGDPLLDPMCGSGTILIEAALMGAN-IAPLYGSDIDWRMVQGARINAENAGVG 79

Query: 172 SLCEVVCGNFLKMPFEDNHFDGA-----YSIEATCHAPKLEDVYAEVFRVLKP 219
              E V  +  K+P  +   D       Y I        LE +Y    R  K 
Sbjct: 80  DKIEFVQADAAKLPLLNGSVDAIVTNPPYGIRIGSK-GALEKLYPAFLREAKR 131

This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 15/88 (17%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIA---AHSR--ANVVGITINE--YQVNRARLH 164
           E A++ + +K   R+LD+G G G    AIA   A  R  A V  + I+     V  AR  
Sbjct: 98  EWALEALLLKEPLRVLDLGTGSG----AIALALAKERPDAEVTAVDISPEALAV--AR-R 150

Query: 165 NKKAGLDSLCEVVCGNFLKMPFEDNHFD 192
           N K GL +  E + G++ + P     FD
Sbjct: 151 NAKHGLGARVEFLQGDWFE-PLPGGRFD 177

Length = 275

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 122 AGDRILDVGCGVGG----PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
            G R+LDVGCG GG     M    A   A+V GI  +E  +  ARLH  ++GL 
Sbjct: 48  FGKRVLDVGCG-GGILSESM----ARLGADVTGIDASEENIEVARLHALESGLK 96

Length = 233

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
             + L+++K GDR+L++G G  G   A+ A     VV I   E    +AR + +  G ++
Sbjct: 63  RMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN 121

Query: 173 LCEVVCGN 180
              V  G+
Sbjct: 122 -VTVRHGD 128

Length = 209

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           V   +++ GD +L++G G G     +   ++  V  I I+       RL  K A  D+L 
Sbjct: 6   VRAANLRPGDTVLEIGPGKGALTEELLERAK-RVTAIEIDPRLA--PRLREKFAAADNL- 61

Query: 175 EVVCGNFLKMPFEDNHFD 192
            V+ G+ LK         
Sbjct: 62  TVIHGDALKFDLPKLQPY 79

Length = 169

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 88  WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN 147
            GQ+F    S+  K             V+  +V  GD +L++G G+G     +   +   
Sbjct: 7   LGQNFLIDESVIQK------------IVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KK 53

Query: 148 VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189
           V  I I+     R R   K   L    E++ G+ LK+   + 
Sbjct: 54  VTAIEIDRRLAERLR---KLLSLYENLEIIEGDALKVDLNEF 92

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           V+  ++  GD +L++G G+G     +   + A V  I I+        L  + A  D+L 
Sbjct: 23  VEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLA--EVLKERFAPYDNL- 78

Query: 175 EVVCGNFLKMPFEDN 189
            V+ G+ LK  F   
Sbjct: 79  TVINGDALKFDFPSL 93

Length = 259

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 15/95 (15%)

Query: 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
           ++LDV  G G          +  VV +   +Y  N  +++          + V G+F  +
Sbjct: 54  KVLDVAAGKGELSYHFKKVFKYYVVAL---DYAENMLKMNLVAD------DKVVGSFEAL 104

Query: 185 PFEDNHFD---GAYSIEATCHAPKLEDVYAEVFRV 216
           PF D  FD    ++++ A   +  +E V AE  RV
Sbjct: 105 PFRDKSFDVVMSSFALHA---SDNIEKVIAEFTRV 136

Length = 226

>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 42/176 (23%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITI--NEYQVNRARLHNKKAGL-D 171
           V+L+ VK G+R+LD   G+G    AI A  R  +  IT+  +   +  A+L+     L +
Sbjct: 127 VELVKVKRGERVLDTCTGLG--YTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFE 184

Query: 172 SLCEVVCGNFLKM--PFEDNHFDGAYSIEATCHAPK---------LEDVYAEVFRVLKPG 220
              +++ G+  ++   F+D  FD      A  H P           E+ Y E++R+LK G
Sbjct: 185 IAIKIILGDAYEVVKDFDDESFD------AIIHDPPRFSLAGELYSEEFYRELYRILKRG 238

Query: 221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276
                Y      +Y                     GL     + E  +RVGFEVVK
Sbjct: 239 GRLFHYVGNPGKRYR--------------------GLDLPKGVAERLRRVGFEVVK 274

Length = 287

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
PLN02244	340	tocopherol O-methyltransferase	100.0
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.97
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.97
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.96
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.95
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.94
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.94
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.93
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	99.92
PRK08317	241	hypothetical protein; Provisional	99.91
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.91
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.91
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.91
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.9
PLN02336	475	phosphoethanolamine N-methyltransferase	99.89
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.89
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.88
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.87
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.86
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.86
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.86
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.85
PLN02490	340	MPBQ/MSBQ methyltransferase	99.85
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.85
PRK05785	226	hypothetical protein; Provisional	99.85
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.84
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.84
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.84
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.84
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.84
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.83
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.83
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.83
PRK11207	197	tellurite resistance protein TehB; Provisional	99.83
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.82
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.82
KOG4300	252	consensus Predicted methyltransferase [General fun	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.81
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.8
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.78
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.78
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.77
PRK12335	287	tellurite resistance protein TehB; Provisional	99.76
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.76
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.73
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.73
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.73
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.72
PRK06202	232	hypothetical protein; Provisional	99.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.71
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.7
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.69
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.69
PLN02336	475	phosphoethanolamine N-methyltransferase	99.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.69
PRK06922	677	hypothetical protein; Provisional	99.69
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.69
PRK04266	226	fibrillarin; Provisional	99.68
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.68
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.68
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.68
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.67
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.67
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.67
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.67
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.66
PRK14967	223	putative methyltransferase; Provisional	99.66
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.65
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.64
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.64
PRK14968	188	putative methyltransferase; Provisional	99.63
KOG1271	227	consensus Methyltransferases [General function pre	99.63
PLN03075	296	nicotianamine synthase; Provisional	99.63
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.63
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.62
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.61
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.6
PTZ00146	293	fibrillarin; Provisional	99.6
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.59
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.59
TIGR03438	301	probable methyltransferase. This model represents	99.59
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.58
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.58
KOG3010	261	consensus Methyltransferase [General function pred	99.58
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.57
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.56
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.56
KOG2361	264	consensus Predicted methyltransferase [General fun	99.55
PRK07402	196	precorrin-6B methylase; Provisional	99.55
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.54
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.54
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.54
COG4123	248	Predicted O-methyltransferase [General function pr	99.54
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.53
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.53
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.53
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.52
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.52
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.52
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.52
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.52
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.5
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.5
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.47
KOG2940	325	consensus Predicted methyltransferase [General fun	99.47
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.47
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.47
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.47
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.46
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.45
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.44
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.44
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.44
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.42
PHA03411	279	putative methyltransferase; Provisional	99.42
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.41
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.39
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.39
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.38
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.37
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.37
COG2890	280	HemK Methylase of polypeptide chain release factor	99.36
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.35
PRK04457	262	spermidine synthase; Provisional	99.35
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.35
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.35
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.34
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.33
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.31
TIGR00438	188	rrmJ cell division protein FtsJ.	99.31
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.3
PRK00811	283	spermidine synthase; Provisional	99.3
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.29
PRK03612	521	spermidine synthase; Provisional	99.28
PRK01581	374	speE spermidine synthase; Validated	99.25
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.23
COG4122	219	Predicted O-methyltransferase [General function pr	99.23
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.23
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.23
PLN02476	278	O-methyltransferase	99.2
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.19
PLN02366	308	spermidine synthase	99.19
KOG2899	288	consensus Predicted methyltransferase [General fun	99.18
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.17
PLN02672	1082	methionine S-methyltransferase	99.17
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.17
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.17
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.17
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.15
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.13
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.13
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.13
COG2521	287	Predicted archaeal methyltransferase [General func	99.12
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	99.12
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.08
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.07
PHA03412	241	putative methyltransferase; Provisional	99.07
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.07
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.06
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.06
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.03
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.03
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.03
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.02
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.02
KOG2904	328	consensus Predicted methyltransferase [General fun	99.02
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.01
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.01
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.01
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.99
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.99
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.98
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.97
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.95
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.93
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.88
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.87
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.86
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.86
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.84
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.78
PRK04148	134	hypothetical protein; Provisional	98.78
PRK00536	262	speE spermidine synthase; Provisional	98.78
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.77
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.77
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.76
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.76
PLN02823	336	spermine synthase	98.75
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.75
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.74
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.73
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.73
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.72
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.72
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.72
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.72
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.7
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.67
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.67
KOG1331	293	consensus Predicted methyltransferase [General fun	98.67
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.65
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.65
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.63
COG2520	341	Predicted methyltransferase [General function pred	98.61
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.6
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.6
COG4798	238	Predicted methyltransferase [General function pred	98.59
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.59
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.58
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.55
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.54
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.51
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.51
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.51
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.5
KOG2730	263	consensus Methylase [General function prediction o	98.48
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.47
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.45
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.44
PF13679	141	Methyltransf_32: Methyltransferase domain	98.4
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.38
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.36
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.35
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.34
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.32
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.25
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.25
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.25
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.23
COG3897	218	Predicted methyltransferase [General function pred	98.21
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.18
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.14
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.11
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.09
PLN02668	386	indole-3-acetate carboxyl methyltransferase	98.08
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.06
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.04
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.01
COG4076	252	Predicted RNA methylase [General function predicti	97.93
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.93
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.92
PRK10742	250	putative methyltransferase; Provisional	97.83
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.82
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.8
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.75
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.75
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.75
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.68
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.64
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.6
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.58
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.54
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.54
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.5
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.47
KOG3115	249	consensus Methyltransferase-like protein [General	97.45
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.39
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.31
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.21
COG0286	489	HsdM Type I restriction-modification system methyl	97.19
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.15
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.09
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.06
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.96
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.91
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.89
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.88
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.79
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.72
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.58
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.54
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.45
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.42
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.37
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.35
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.34
COG1565	370	Uncharacterized conserved protein [Function unknow	96.26
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.26
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.23
KOG2920	282	consensus Predicted methyltransferase [General fun	95.93
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.92
PHA01634	156	hypothetical protein	95.89
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	95.88
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.85
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.82
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.77
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.62
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.59
COG3315	297	O-Methyltransferase involved in polyketide biosynt	95.45
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.43
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.41
KOG2671	421	consensus Putative RNA methylase [Replication, rec	95.38
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.33
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.3
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.24
PRK13699	227	putative methylase; Provisional	95.16
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.95
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.94
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.93
PRK11524	284	putative methyltransferase; Provisional	94.92
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.85
COG4301	321	Uncharacterized conserved protein [Function unknow	94.79
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	94.57
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.51
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.49
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.47
KOG1227	351	consensus Putative methyltransferase [General func	94.47
KOG3924	419	consensus Putative protein methyltransferase invol	94.46
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.42
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.38
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.32
PRK13699	227	putative methylase; Provisional	94.29
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.21
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	93.96
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.6
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.58
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.53
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.5
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.48
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.36
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.34
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.3
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	93.16
PTZ00357	1072	methyltransferase; Provisional	92.96
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.91
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.84
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.8
PLN02494	477	adenosylhomocysteinase	92.76
PLN02740	381	Alcohol dehydrogenase-like	92.69
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	92.64
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	92.52
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.31
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	92.26
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	92.25
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	92.16
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	92.02
KOG2078	495	consensus tRNA modification enzyme [RNA processing	91.92
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.68
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.51
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	91.47
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.46
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	91.43
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	91.4
PLN02827	378	Alcohol dehydrogenase-like	91.37
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.3
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	91.3
COG1568	354	Predicted methyltransferases [General function pre	91.13
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.04
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	91.02
PRK11524	284	putative methyltransferase; Provisional	90.89
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	90.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.61
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.57
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.56
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	90.44
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	90.43
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.42
COG4017	254	Uncharacterized protein conserved in archaea [Func	90.38
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.35
COG2933	358	Predicted SAM-dependent methyltransferase [General	90.31
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	90.26
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	90.21
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.14
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	89.73
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.65
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	89.6
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	89.58
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	89.45
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	89.02
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	88.91
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	88.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	88.85
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	88.69
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.67
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.64
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.93
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.86
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.57
KOG2912	419	consensus Predicted DNA methylase [Function unknow	87.22
PLN02178	375	cinnamyl-alcohol dehydrogenase	87.13
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.06
PRK08306	296	dipicolinate synthase subunit A; Reviewed	86.75
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	86.64
KOG2782	303	consensus Putative SAM dependent methyltransferase	86.46
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	86.41
PTZ00075	476	Adenosylhomocysteinase; Provisional	86.39
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	85.95
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	85.73
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	85.69
PRK05854	313	short chain dehydrogenase; Provisional	85.57
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	85.46
PRK07576	264	short chain dehydrogenase; Provisional	85.27
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	85.01
PRK08324	681	short chain dehydrogenase; Validated	84.99
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	84.75
KOG2352	482	consensus Predicted spermine/spermidine synthase [	84.69
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	84.61
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	84.6
PRK03562	621	glutathione-regulated potassium-efflux system prot	84.39
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	84.28
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	84.22
PRK08265	261	short chain dehydrogenase; Provisional	84.2
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	84.04
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	83.83
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	83.71
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	83.59
PRK10083	339	putative oxidoreductase; Provisional	83.36
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	83.18
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	83.12
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	82.58
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	82.52
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	82.14
PRK10458	467	DNA cytosine methylase; Provisional	82.13
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	81.97
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	81.91
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	81.52
PRK07109	334	short chain dehydrogenase; Provisional	81.33
PRK08267	260	short chain dehydrogenase; Provisional	81.25
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	80.62
PRK07904	253	short chain dehydrogenase; Provisional	80.25

>PLN02244 tocopherol O-methyltransferase

Probab=100.00  E-value=2.5e-31  Score=243.51  Aligned_cols=219  Identities=28%  Similarity=0.453  Sum_probs=181.9

Q ss_pred             ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCC---CCCHHHHHHHHHHHHHHhcCC-----CCCCEEEEECCCCCh
Q 018194           64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP---GKSHRDATRLHEEMAVDLIDV-----KAGDRILDVGCGVGG  135 (359)
Q Consensus        64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~  135 (359)
                      .......+.|..|||..+++|+..|++++|++....   ..++.+++..+.+.+++.+.+     .++.+|||||||+|.
T Consensus        52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~  131 (340)
T PLN02244         52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG  131 (340)
T ss_pred             cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH
Confidence            334456778999999999999999999998765443   357888888888888888877     678999999999999


Q ss_pred             HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHh
Q 018194          136 PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFR  215 (359)
Q Consensus       136 ~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~  215 (359)
                      ++..+++..+++|+|+|+|+.|++.++++....++.++++++++|+.++++++++||+|++..+++|++|...+++++.+
T Consensus       132 ~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~r  211 (340)
T PLN02244        132 SSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELAR  211 (340)
T ss_pred             HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHH
Confidence            99999986688999999999999999999988888778999999999999999999999999999999999999999999


Q ss_pred             ccCCCCEEEEEEeeeCcccc---cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          216 VLKPGSLYVSYEWVTTDKYE---AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       216 ~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                      +|||||++++.++.......   ............+......+.+.+.+++.++|+++||++++.++++.
T Consensus       212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~  281 (340)
T PLN02244        212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE  281 (340)
T ss_pred             HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence            99999999998876532111   11222333333333344456677899999999999999999988753

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.97  E-value=8.6e-31  Score=230.96  Aligned_cols=260  Identities=24%  Similarity=0.345  Sum_probs=181.4

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      ++..+.|+.|||..++||..+++++++|+..+   +.+++.+++.+..+.+++.+++++|++|||||||.|.++..+++.
T Consensus         4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~   83 (273)
T PF02353_consen    4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER   83 (273)
T ss_dssp             ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred             chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence            45567899999999999999999999999753   667799999999999999999999999999999999999999997


Q ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc--CCHHHHHHHHHhccCCCC
Q 018194          144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA--PKLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       144 ~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG  221 (359)
                      .|++|+|+++|+++.+.+++++.+.|+.+++++...|..+++   .+||.|++..+++|+  .+...+++++.++|||||
T Consensus        84 ~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG  160 (273)
T PF02353_consen   84 YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG  160 (273)
T ss_dssp             H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred             cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence            799999999999999999999999999999999999998764   399999999999999  478999999999999999


Q ss_pred             EEEEEEeeeCcccccC-ch-HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhH
Q 018194          222 LYVSYEWVTTDKYEAE-NK-EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAY  299 (359)
Q Consensus       222 ~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~  299 (359)
                      ++++..+......... .. ....+...++++..+|   +..++...++++||++.+.+++..++         ......
T Consensus       161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lp---s~~~~~~~~~~~~l~v~~~~~~~~hY---------~~Tl~~  228 (273)
T PF02353_consen  161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLP---SLSEILRAAEDAGLEVEDVENLGRHY---------ARTLRA  228 (273)
T ss_dssp             EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHH---------HHHHHH
T ss_pred             EEEEEecccccccchhhcCCCceEEEEeeCCCCCCC---CHHHHHHHHhcCCEEEEEEEEcCcCH---------HHHHHH
Confidence            9999776664432211 11 1133445556555444   67889999999999999998874322         223455


Q ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCcccc
Q 018194          300 WRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGI  341 (359)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  341 (359)
                      |...+.....+...+..+...+..+.+...+......|...+
T Consensus       229 W~~~f~~~~~~i~~~~~~~f~r~w~~yl~~~~~~F~~g~~~~  270 (273)
T PF02353_consen  229 WRENFDANREEIIALFDEEFYRMWRYYLAYCAAGFRAGSIDV  270 (273)
T ss_dssp             HHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence            655555554444444333345566666667666666665543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=9.8e-29  Score=214.02  Aligned_cols=260  Identities=24%  Similarity=0.362  Sum_probs=201.5

Q ss_pred             ccchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh
Q 018194           66 KEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA  142 (359)
Q Consensus        66 ~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~  142 (359)
                      .....+.|..|||+.++||..++++++.|++.+   +..++.+++....+.+++.++++||++|||||||.|.++..+|+
T Consensus        13 ~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~   92 (283)
T COG2230          13 KRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAE   92 (283)
T ss_pred             ccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHH
Confidence            345677899999999999999999999999874   33479999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCC
Q 018194          143 HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPG  220 (359)
Q Consensus       143 ~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkpg  220 (359)
                      ..+++|+|+++|++|.+.+++++...|+..++++...|..++.   +.||.|++..+++|+.  +...+++.+.++|+||
T Consensus        93 ~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~  169 (283)
T COG2230          93 EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG  169 (283)
T ss_pred             HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence            8899999999999999999999999999999999999998864   4599999999999996  4999999999999999


Q ss_pred             CEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHH
Q 018194          221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYW  300 (359)
Q Consensus       221 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~  300 (359)
                      |.+++...........  .....+...++++..+|   +.+++.+..+++||.+.+.+.+..++     .    .....|
T Consensus       170 G~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hY-----a----~Tl~~W  235 (283)
T COG2230         170 GRMLLHSITGPDQEFR--RFPDFIDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHY-----A----RTLRLW  235 (283)
T ss_pred             ceEEEEEecCCCcccc--cchHHHHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHH-----H----HHHHHH
Confidence            9999987665432221  33344556666666555   56889999999999999887774433     1    122334


Q ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccc
Q 018194          301 RNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIF  342 (359)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  342 (359)
                      ...+-...-+...+-.+...+....+...+......+...++
T Consensus       236 ~~~f~~~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~~~~~~  277 (283)
T COG2230         236 RERFEANRDEAIALYDERFYRMWELYLAACAAAFRAGYIDVF  277 (283)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCceEE
Confidence            444444433333332222334445555555555555544433

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.97  E-value=1.9e-29  Score=215.01  Aligned_cols=199  Identities=29%  Similarity=0.471  Sum_probs=156.0

Q ss_pred             ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      .....+++.|++.||.++++.+.+.                  ...+.+.+...+...+|.+|||||||||.++..+++.
T Consensus        11 ~~v~~vF~~ia~~YD~~n~~~S~g~------------------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~   72 (238)
T COG2226          11 EKVQKVFDKVAKKYDLMNDLMSFGL------------------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKS   72 (238)
T ss_pred             HHHHHHHHhhHHHHHhhcccccCcc------------------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHh
Confidence            3445667777888888776655432                  3567778888888889999999999999999999985


Q ss_pred             -cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCE
Q 018194          144 -SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL  222 (359)
Q Consensus       144 -~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  222 (359)
                       ..++|+|+|+|+.|++.|+++..+.+... ++|+++|++++||++++||+|.+.+.|.+++|++.+|+|++|+|||||+
T Consensus        73 ~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~  151 (238)
T COG2226          73 VGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGR  151 (238)
T ss_pred             cCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeE
Confidence             34799999999999999999999887665 9999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeeCcccccCchHHHHHHhhhhcC-------CC---------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          223 YVSYEWVTTDKYEAENKEHVDIIQGIERG-------DA---------LPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      +++.|+..+................+.+.       ..         ...+.+.+++.++++++||+.+..+.+.
T Consensus       152 ~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~  226 (238)
T COG2226         152 LLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT  226 (238)
T ss_pred             EEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence            99999877543222111111111101110       00         1135688999999999999999866653

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.96  E-value=2.3e-29  Score=217.22  Aligned_cols=198  Identities=29%  Similarity=0.440  Sum_probs=96.1

Q ss_pred             ccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      +....+++.++..||..+++...+.+                  +.+.+.+++.+...+|.+|||+|||||.++..+++.
T Consensus         7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~------------------~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~   68 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRMNDLLSFGQD------------------RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARR   68 (233)
T ss_dssp             ------------------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhCCCccccCCcHH------------------HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHH
Confidence            34556677777788877766544321                  334456677777888999999999999999999985


Q ss_pred             --cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCC
Q 018194          144 --SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       144 --~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  221 (359)
                        +..+|+|+|+|+.|++.|+++....+.. +|+++++|++++|+++++||+|++.+.+++++|+..+++|++|+|||||
T Consensus        69 ~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG  147 (233)
T PF01209_consen   69 VGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGG  147 (233)
T ss_dssp             SS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEE
T ss_pred             CCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCe
Confidence              3479999999999999999999987765 8999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeeCcccccCchHHHH-------HHhhhhcCC---------CCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          222 LYVSYEWVTTDKYEAENKEHVD-------IIQGIERGD---------ALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       222 ~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ++++.|+..+.... ....+..       +...+..+.         ....+.+.+++.++|+++||+.++.+.+.
T Consensus       148 ~l~ile~~~p~~~~-~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~  222 (233)
T PF01209_consen  148 RLVILEFSKPRNPL-LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT  222 (233)
T ss_dssp             EEEEEEEEB-SSHH-HHHHHHH------------------------------------------------------
T ss_pred             EEEEeeccCCCCch-hhceeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999987754311 0011111       111111111         12236678999999999999998877663

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=193.13  Aligned_cols=196  Identities=23%  Similarity=0.376  Sum_probs=156.0

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--  144 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--  144 (359)
                      ...++.|++.||.++|....+.                  ++.+.+.....+....++++||++||||..+..+.++.  
T Consensus        63 ~~vF~~vA~~YD~mND~mSlGi------------------HRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s  124 (296)
T KOG1540|consen   63 HHVFESVAKKYDIMNDAMSLGI------------------HRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKS  124 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhhcch------------------hHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhcc
Confidence            5788999999999999877543                  35567888889999999999999999999999998752  


Q ss_pred             -----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhcc
Q 018194          145 -----RANVVGITINEYQVNRARLHNKKAGLDSL--CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL  217 (359)
Q Consensus       145 -----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L  217 (359)
                           +.+|+++|+||.|+..++++..+.++.++  +.++++|++++||++++||..++.+.+.+++++++.|++++|+|
T Consensus       125 ~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVL  204 (296)
T KOG1540|consen  125 QFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVL  204 (296)
T ss_pred             ccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhc
Confidence                 26899999999999999999988887665  89999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEeeeCcc-c-----ccCchHHHHHHhhhhcC---------CCCCCCCCHHHHHHHHHhCCCeEEE-EEec
Q 018194          218 KPGSLYVSYEWVTTDK-Y-----EAENKEHVDIIQGIERG---------DALPGLRSYAEITEIAKRVGFEVVK-EKDL  280 (359)
Q Consensus       218 kpgG~l~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~aGF~~i~-~~~~  280 (359)
                      ||||++.+.++...++ .     ..........+..+..+         .....+.+.+++..+.+++||..+. .+.+
T Consensus       205 KpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~l  283 (296)
T KOG1540|consen  205 KPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENL  283 (296)
T ss_pred             CCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccccccc
Confidence            9999999998876542 0     00000000001111111         1123466889999999999999986 4443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.94  E-value=2.5e-25  Score=196.61  Aligned_cols=170  Identities=22%  Similarity=0.320  Sum_probs=130.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKK--AGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~  185 (359)
                      +...+.+.+.+.++.+|||+|||+|.++..+++..  ..+|+|+|+|+.|++.|+++...  .....+++++++|+.++|
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            34455566777889999999999999999998753  46999999999999999877542  122347999999999999


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH-hh----hhc--CC------
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII-QG----IER--GD------  252 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~--~~------  252 (359)
                      +++++||+|++.++++|++|+..++++++|+|||||++++.++.......  ......+. ..    +..  +.      
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~y~~  218 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF--TTSMQEWMIDNVVVPVATGYGLAKEYEY  218 (261)
T ss_pred             CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH--HHHHHHHHHhhhhhHHHHHhCChHHHHH
Confidence            99999999999999999999999999999999999999999887643210  01110100 00    000  00      


Q ss_pred             ---CCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          253 ---ALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       253 ---~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                         ....+.+.+++.++|+++||++++...+.
T Consensus       219 l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~  250 (261)
T PLN02233        219 LKSSINEYLTGEELEKLALEAGFSSAKHYEIS  250 (261)
T ss_pred             HHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence               11246789999999999999999887763

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.94  E-value=2.7e-24  Score=199.21  Aligned_cols=263  Identities=19%  Similarity=0.243  Sum_probs=193.9

Q ss_pred             cccchhhHHHHhhhhhHHHHHhhcCCceeecCCCC--CCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh
Q 018194           65 TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP--GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA  142 (359)
Q Consensus        65 ~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~  142 (359)
                      ++....+.++.|||..+++|..+++++++|+..+.  ..++.+++....+.+++.+.+.++.+|||||||+|.++..+++
T Consensus       108 ~~~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~  187 (383)
T PRK11705        108 SKKRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAE  187 (383)
T ss_pred             ChhhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH
Confidence            34456678889999999999999999998887653  4678999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCC
Q 018194          143 HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPG  220 (359)
Q Consensus       143 ~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkpg  220 (359)
                      ..+++|+|+|+|+.|++.++++..  ++  ++++...|..++   +++||.|++..+++|++  ++..+++++.++||||
T Consensus       188 ~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG  260 (383)
T PRK11705        188 HYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD  260 (383)
T ss_pred             HCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            778899999999999999999874  22  478888888765   47899999999999985  4689999999999999


Q ss_pred             CEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHH
Q 018194          221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYW  300 (359)
Q Consensus       221 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~  300 (359)
                      |++++.++...........   .+...++.+.   .+.+..++.+.++ .||++.+.+++..+     +.    .....|
T Consensus       261 G~lvl~~i~~~~~~~~~~~---~i~~yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~h-----y~----~TL~~W  324 (383)
T PRK11705        261 GLFLLHTIGSNKTDTNVDP---WINKYIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGAD-----YD----RTLMAW  324 (383)
T ss_pred             cEEEEEEccCCCCCCCCCC---CceeeecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhh-----HH----HHHHHH
Confidence            9999977654332111111   1112222222   2446778877766 58999888776432     22    224455


Q ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCC
Q 018194          301 RNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH  354 (359)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~  354 (359)
                      ...+....-+....-.+...+...++...++...+.|....+.    ++..||.
T Consensus       325 ~~~f~~~~~~~~~~~~~~~~r~w~~yl~~~~~~F~~~~~~~~q----~~~~~~~  374 (383)
T PRK11705        325 HENFEAAWPELADNYSERFYRMWRYYLLSCAGAFRARDIQLWQ----VVFSPRG  374 (383)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEeCC
Confidence            5554444333333334445567777777888877777666554    5666644

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.93  E-value=2.7e-24  Score=190.16  Aligned_cols=244  Identities=21%  Similarity=0.281  Sum_probs=165.1

Q ss_pred             hhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHH
Q 018194           78 NLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ  157 (359)
Q Consensus        78 d~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~  157 (359)
                      +..-..|+..+|..+.....          ......++..+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.|
T Consensus        18 ~~~~~~~e~~~g~~~~~~gg----------~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~   87 (263)
T PTZ00098         18 DEGIKAYEFIFGEDYISSGG----------IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM   87 (263)
T ss_pred             cccchhHHHHhCCCCCCCCc----------hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence            34457888888754432111          11235567778889999999999999999999987667899999999999


Q ss_pred             HHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccc
Q 018194          158 VNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE  235 (359)
Q Consensus       158 ~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  235 (359)
                      ++.++++...   ..++.+..+|+.+.++++++||+|++..+++|++  ++..++++++++|||||++++.++..... .
T Consensus        88 ~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~  163 (263)
T PTZ00098         88 VNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-E  163 (263)
T ss_pred             HHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-c
Confidence            9999988653   3579999999998888889999999999999986  78999999999999999999988765432 1


Q ss_pred             cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHHhccC
Q 018194          236 AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIA  315 (359)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (359)
                      ..........    .. ....+.+..++.++|+++||++++.++++.     .+..... ..   ... +....+.+  .
T Consensus       164 ~~~~~~~~~~----~~-~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~-----~~~~~~~-~~---~~~-~~~~~~~~--~  226 (263)
T PTZ00098        164 NWDEEFKAYI----KK-RKYTLIPIQEYGDLIKSCNFQNVVAKDISD-----YWLELLQ-VE---LKK-LEEKKEEF--L  226 (263)
T ss_pred             CcHHHHHHHH----Hh-cCCCCCCHHHHHHHHHHCCCCeeeEEeCcH-----HHHHHHH-HH---HHH-HHHhHHHH--H
Confidence            1111111111    11 123456889999999999999999988742     2222211 11   111 11111111  1


Q ss_pred             CCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecC
Q 018194          316 PKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP  353 (359)
Q Consensus       316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP  353 (359)
                      ....++..+.+......+.+++..+... +-++.+|||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wg~~~~~~~  263 (263)
T PTZ00098        227 KLYSEKEYNSLKDGWTRKIKDTKRKLQK-WGYFKAQKM  263 (263)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhhccccc-cceEeecCC
Confidence            1223344455566666666666555333 234558885

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=99.92  E-value=4.5e-25  Score=200.02  Aligned_cols=309  Identities=43%  Similarity=0.664  Sum_probs=253.1

Q ss_pred             HHHHHHHHhhhcCCccccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEE
Q 018194           48 EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRIL  127 (359)
Q Consensus        48 ~~~~~~y~~~~~~~~~~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL  127 (359)
                      .+....+++.....+......+.+.++++|+...++|.+.|+.++|+++............++.....-.....++.+++
T Consensus        36 ~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~  115 (364)
T KOG1269|consen   36 VDNYLTFIKKNAEINAEETEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVL  115 (364)
T ss_pred             hhhHhhhhhhhcccccccccccchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCccccccc
Confidence            33343444444333333366788899999999999999999999999998776666666555555555556778888999


Q ss_pred             EECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHH
Q 018194          128 DVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLE  207 (359)
Q Consensus       128 DiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  207 (359)
                      |+|||.|.....++.+.++.++|+|.++..+.++........+..+..++.+|+.+.|++++.||.+.+..+.+|.++..
T Consensus       116 ~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~  195 (364)
T KOG1269|consen  116 DVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLE  195 (364)
T ss_pred             ccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHH
Confidence            99999999999999987899999999999999999999888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE-EEecCCCCCC
Q 018194          208 DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK-EKDLAKPPAQ  286 (359)
Q Consensus       208 ~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~-~~~~~~~~~~  286 (359)
                      .++.+++|+++|||.++..+|.....+......+..+...+..+...+.......+-++++..||..+. .+++......
T Consensus       196 ~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~  275 (364)
T KOG1269|consen  196 KVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSF  275 (364)
T ss_pred             HHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcccccCCCcc
Confidence            999999999999999999999998888777777777777777666666555566788999999999988 6666655556


Q ss_pred             chhhhhh--------------ccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeE-EEe
Q 018194          287 PWWTRLK--------------MGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMV-LLR  351 (359)
Q Consensus       287 ~w~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v-~ar  351 (359)
                      +|+.+..              ....+.+.........+.++..|.+..++..++.+....+.++++.+.|+++.+. +.+
T Consensus       276 ~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~gF~~~~~~~~~~  355 (364)
T KOG1269|consen  276 PWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETGGFTPVDIEDVTD  355 (364)
T ss_pred             ccccccchhheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceecccccCcccceeeEccc
Confidence            8888775              2223333333334566788889999999999999999999999888899999987 999


Q ss_pred             cCCCC
Q 018194          352 KPHPP  356 (359)
Q Consensus       352 KP~~~  356 (359)
                      ||.+.
T Consensus       356 k~~~~  360 (364)
T KOG1269|consen  356 KPEEV  360 (364)
T ss_pred             cchhh
Confidence            99864

>PRK08317 hypothetical protein; Provisional

Probab=99.91  E-value=3e-22  Score=175.78  Aligned_cols=232  Identities=23%  Similarity=0.260  Sum_probs=157.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      ...+.+...+.+.++.+|||+|||+|.++..+++.  +.++++|+|+|+.+++.++++..  ....++++...|+.+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~   83 (241)
T PRK08317          6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPF   83 (241)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCC
Confidence            34455677788889999999999999999999885  35799999999999999988732  234579999999998888


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCc-ccccC-chHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD-KYEAE-NKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                      ++++||+|++..+++|++++..+++++.++|||||.+++.+..... ..... ..........+..  ..........+.
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  161 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLP  161 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence            8889999999999999999999999999999999999987643211 11111 1122222222221  112334567899


Q ss_pred             HHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccc
Q 018194          265 EIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTP  344 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  344 (359)
                      ++|+++||+++..+..... ...|.....    ...+........+.   .-...+++...+.++.+. ...+......+
T Consensus       162 ~~l~~aGf~~~~~~~~~~~-~~~~~~~~~----~~~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~  232 (241)
T PRK08317        162 GLFREAGLTDIEVEPYTLI-ETDLKEADK----GFGLIRAARRAVEA---GGISADEADAWLADLAQL-ARAGEFFFSVT  232 (241)
T ss_pred             HHHHHcCCCceeEEEEEEe-ccCcchhhH----HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH-HhcCCEEEEEE
Confidence            9999999998877665322 223322110    11111112222111   112334455555555544 34666777888


Q ss_pred             eeeEEEecC
Q 018194          345 MHMVLLRKP  353 (359)
Q Consensus       345 ~~~v~arKP  353 (359)
                      .++++||||
T Consensus       233 ~~~~~~~kp  241 (241)
T PRK08317        233 GFLVVGRKP  241 (241)
T ss_pred             EEEEEEeCC
Confidence            999999998

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.91  E-value=2.7e-23  Score=181.42  Aligned_cols=172  Identities=26%  Similarity=0.373  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      ..+.+.+++.+.+.++.+|||+|||+|.++..+++.  ++.+|+|+|+|+.+++.++++....++ ++++++++|+.+++
T Consensus        31 ~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  109 (231)
T TIGR02752        31 KKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP  109 (231)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence            334466777888888999999999999999999875  457999999999999999999887765 57999999999988


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHH-------HHHhhhhc--------
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV-------DIIQGIER--------  250 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--------  250 (359)
                      +++++||+|++..+++|++++.++++++.++|+|||++++.+....... .......       ........        
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  188 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIP-GFKQLYFFYFKYIMPLFGKLFAKSYKEYSW  188 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCCh-HHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence            8888999999999999999999999999999999999998775432210 0000000       00000000        


Q ss_pred             -CCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          251 -GDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       251 -~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                       ......+.+.+++.++|+++||++++.+.+.
T Consensus       189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  220 (231)
T TIGR02752       189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYT  220 (231)
T ss_pred             HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence             0012245688999999999999999887774

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.91  E-value=7.7e-23  Score=180.91  Aligned_cols=157  Identities=18%  Similarity=0.145  Sum_probs=117.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ...++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++        +++++++|+.+++ +++
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCC
Confidence            345677777788899999999999999999885 568999999999999998753        4789999998764 567


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHH-----HhhhhcCC---CCCCCCCHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDI-----IQGIERGD---ALPGLRSYA  261 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~  261 (359)
                      +||+|+++.+++|++++..++++++++|||||++++..+....  ..........     +.......   ....+.+..
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  166 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD--APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA  166 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC--ChhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence            9999999999999999999999999999999999986432111  0010011110     01101110   112356889


Q ss_pred             HHHHHHHhCCCeEEEEE
Q 018194          262 EITEIAKRVGFEVVKEK  278 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~~~  278 (359)
                      ++.++|+++||++...+
T Consensus       167 ~~~~~l~~aGf~v~~~~  183 (255)
T PRK14103        167 GYAELLTDAGCKVDAWE  183 (255)
T ss_pred             HHHHHHHhCCCeEEEEe
Confidence            99999999999865443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.91  E-value=4.8e-23  Score=185.47  Aligned_cols=163  Identities=22%  Similarity=0.300  Sum_probs=126.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||||||+|.++..+++ .+++|+|+|+|+.+++.|+++....+...+++++++|++++++++++||+|++..++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            3577999999999999999987 478999999999999999988765554457999999999988777899999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcc-cccCchHHHHHHhhhhcCC-CCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDK-YEAENKEHVDIIQGIERGD-ALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      +|++|+..+++++.++|||||.+++.++..... +.........+......+. ....+++++++.++|+++||++++..
T Consensus       209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            999999999999999999999999976543211 0000000111111122222 23357899999999999999999987


Q ss_pred             ecCCCC
Q 018194          279 DLAKPP  284 (359)
Q Consensus       279 ~~~~~~  284 (359)
                      -+...|
T Consensus       289 G~~~~p  294 (322)
T PLN02396        289 GFVYNP  294 (322)
T ss_pred             eeEEcC
Confidence            775544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.90  E-value=2.8e-23  Score=173.75  Aligned_cols=192  Identities=21%  Similarity=0.272  Sum_probs=139.1

Q ss_pred             hhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCC---CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH
Q 018194           86 WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDV---KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR  162 (359)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~  162 (359)
                      .+|+....|.+.+..+..+.      .++......   -++.+|||+|||.|.++..+|+. |+.|+|+|+|+.+++.|+
T Consensus        26 ~wwd~~g~f~~LH~~N~~rl------~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak   98 (243)
T COG2227          26 RWWDPEGEFKPLHKINPLRL------DYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAK   98 (243)
T ss_pred             hhcCCCCceeeeeeeccchh------hhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHH
Confidence            34555666665554444332      222222221   47899999999999999999996 799999999999999999


Q ss_pred             HHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHH
Q 018194          163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEH  241 (359)
Q Consensus       163 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~  241 (359)
                      .++.+.++.  +++.+..++++....++||+|+|..+++|++|+..+++++.+++||||.+++.....+..-... ....
T Consensus        99 ~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~a  176 (243)
T COG2227          99 LHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGA  176 (243)
T ss_pred             Hhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHH
Confidence            999988764  7899999988766568999999999999999999999999999999999999765543110000 0011


Q ss_pred             HHHHhhhhcCCC-CCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCC
Q 018194          242 VDIIQGIERGDA-LPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQ  286 (359)
Q Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~  286 (359)
                      ..+...+..+.. ...+..++++..++..+|+.+.+...+...+..
T Consensus       177 e~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~y~p~~  222 (243)
T COG2227         177 EYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLTYNPLT  222 (243)
T ss_pred             HHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceEecccc
Confidence            112222222211 223667889999999999999998877665543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.89  E-value=1.8e-21  Score=187.48  Aligned_cols=161  Identities=26%  Similarity=0.415  Sum_probs=130.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++..  +...+++|.++|+...++++++|
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCE
Confidence            4455566677889999999999999999998778899999999999999988765  33457999999999888888899


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+|++..+++|++++..++++++++|||||++++.++.......  .........   . .+ ..+.+..++.++|+++|
T Consensus       334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~---~-~g-~~~~~~~~~~~~l~~aG  406 (475)
T PLN02336        334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP--SPEFAEYIK---Q-RG-YDLHDVQAYGQMLKDAG  406 (475)
T ss_pred             EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC--cHHHHHHHH---h-cC-CCCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999998876543211  112221111   1 11 24568899999999999


Q ss_pred             CeEEEEEecC
Q 018194          272 FEVVKEKDLA  281 (359)
Q Consensus       272 F~~i~~~~~~  281 (359)
                      |+++..++++
T Consensus       407 F~~i~~~d~~  416 (475)
T PLN02336        407 FDDVIAEDRT  416 (475)
T ss_pred             Ceeeeeecch
Confidence            9999887764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.89  E-value=9.7e-21  Score=167.25  Aligned_cols=176  Identities=18%  Similarity=0.266  Sum_probs=133.6

Q ss_pred             hHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEE
Q 018194           71 DFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG  150 (359)
Q Consensus        71 ~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  150 (359)
                      +.|+..|+..+..|+.                ....++...+.+++.+...++.+|||+|||+|.++..+++. +.+|++
T Consensus         7 ~~i~~~F~~aa~~Y~~----------------~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~   69 (251)
T PRK10258          7 QAIAAAFGRAAAHYEQ----------------HAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTA   69 (251)
T ss_pred             HHHHHHHHHHHHhHhH----------------HHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEE
Confidence            3456666666655553                12334555666777777667789999999999999988874 689999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +|+|+.|++.++++..      .+.++++|++++++++++||+|+++.++++.+++..++.++.++|||||.+++..+..
T Consensus        70 ~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258         70 LDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             EECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9999999999987642      3578999999999888899999999999999999999999999999999999976543


Q ss_pred             CcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194          231 TDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                      ..     .......+...........+.+.+++.++|+..|++.
T Consensus       144 ~~-----~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        144 GS-----LPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             Cc-----hHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence            21     1222222222222223345778999999999999875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.88  E-value=1.8e-21  Score=172.16  Aligned_cols=168  Identities=11%  Similarity=0.121  Sum_probs=126.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  189 (359)
                      ...+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.|+++....++.++++++++|+.+++ ++++
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            344555555 45679999999999999999986 67999999999999999999998888778999999998764 5668


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCccccc--CchHHHHHHhhhhc----CCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA--ENKEHVDIIQGIER----GDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~  263 (359)
                      +||+|++..+++|++++..+++++.++|||||++++..+........  ...........+..    ........+++++
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l  191 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV  191 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence            99999999999999999999999999999999999875543211000  00000001111110    0011234688999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|+++||+++....+
T Consensus       192 ~~~l~~aGf~~~~~~gi  208 (255)
T PRK11036        192 YQWLEEAGWQIMGKTGV  208 (255)
T ss_pred             HHHHHHCCCeEeeeeeE
Confidence            99999999999876654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.87  E-value=1.8e-20  Score=170.09  Aligned_cols=166  Identities=20%  Similarity=0.210  Sum_probs=123.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+...+....+.+|||||||+|.++..++......|+|+|+|+.++..++......+...+++++.+|++++++ .++|
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F  190 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF  190 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence            445556665568899999999999999999864457999999999997665543333334579999999999987 7889


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+|++..+++|..++..++++++++|+|||.+++.++..............    .+........+.+..++.++|+++|
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~----~y~~~~~~~~lps~~~l~~~L~~aG  266 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD----RYAKMRNVYFIPSVPALKNWLERAG  266 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh----HHhcCccceeCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999866543321111000000    0111111112458899999999999


Q ss_pred             CeEEEEEecCC
Q 018194          272 FEVVKEKDLAK  282 (359)
Q Consensus       272 F~~i~~~~~~~  282 (359)
                      |++++..+.+.
T Consensus       267 F~~i~~~~~~~  277 (322)
T PRK15068        267 FKDVRIVDVSV  277 (322)
T ss_pred             CceEEEEeCCC
Confidence            99999887654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.86  E-value=5.8e-20  Score=163.02  Aligned_cols=229  Identities=12%  Similarity=0.147  Sum_probs=144.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      ......++..+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.++++.      .++.++.+|+.++. 
T Consensus        17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-   89 (258)
T PRK01683         17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-   89 (258)
T ss_pred             hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-
Confidence            334566777778888999999999999999999875 5689999999999999998763      35899999998764 


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH-HHH------HHhhhhcCC-CCCCCC
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE-HVD------IIQGIERGD-ALPGLR  258 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~-~~~~~~  258 (359)
                      +.++||+|+++.+++|++|...+++++.++|||||.+++....   ........ ...      +...+.... ....+.
T Consensus        90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  166 (258)
T PRK01683         90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD---NLDEPSHVLMREVAENGPWEQNLPDRGARRAPLP  166 (258)
T ss_pred             CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC---CCCCHHHHHHHHHHccCchHHHhccccccCcCCC
Confidence            4569999999999999999999999999999999999885211   11111111 100      111111111 112345


Q ss_pred             CHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHH-HHHHHHHhccCCCCcHHHHHHHHHHHHHHH---
Q 018194          259 SYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHI-LVTILAALGIAPKGTVGVHDMLFKTADYLT---  334 (359)
Q Consensus       259 ~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  334 (359)
                      +...+.++|.++|+.+.........++.. .     ..+.+|+... +.....  .+.+...+++.+.+.+......   
T Consensus       167 ~~~~~~~~l~~~g~~v~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~--~l~~~~~~~f~~~~~~~~~~~~~~~  238 (258)
T PRK01683        167 PPHAYYDALAPAACRVDIWHTTYYHPMPS-A-----QAIVEWVKGTGLRPFLD--PLTESEQAAFLAAYLARIAEAYPLQ  238 (258)
T ss_pred             CHHHHHHHHHhCCCceeeeeeeeeeecCC-c-----hhhhhhhhhccHHHHHh--hCCHHHHHHHHHHHHHHHHHHCCCC
Confidence            77889999999998754333221111111 1     1111222211 122221  2223334455555544444432   


Q ss_pred             hcCccccccceeeEEEecCC
Q 018194          335 RGGETGIFTPMHMVLLRKPH  354 (359)
Q Consensus       335 ~~~~~~~~~~~~~v~arKP~  354 (359)
                      .+|...+.++..+++|+|++
T Consensus       239 ~~g~~~~~~~~~~~~~~~~~  258 (258)
T PRK01683        239 ADGKVLLAFPRLFIVARRKE  258 (258)
T ss_pred             CCCcEEcccceEEEEEEecC
Confidence            23434455556679999863

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.86  E-value=3e-20  Score=161.36  Aligned_cols=148  Identities=24%  Similarity=0.357  Sum_probs=121.7

Q ss_pred             CEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194          124 DRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~  202 (359)
                      .+|||||||+|.++..+++. ++++|+|+|+|+.+++.+++++...++.+++++...|+...+++ ++||+|++..+++|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            37999999999999999885 46899999999999999999999888888999999999776654 58999999999999


Q ss_pred             cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          203 APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       203 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                      ++++..+++++.++|||||++++.++.... .....           .......+.+..++.++++++||++++..+++.
T Consensus        80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~-----------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~  147 (224)
T smart00828       80 IKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAIE-----------HEETTSYLVTREEWAELLARNNLRVVEGVDASL  147 (224)
T ss_pred             CCCHHHHHHHHHHHcCCCCEEEEEEccccc-Ccccc-----------ccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence            999999999999999999999998764321 11000           000111255788999999999999999988865


Q ss_pred             CC
Q 018194          283 PP  284 (359)
Q Consensus       283 ~~  284 (359)
                      ..
T Consensus       148 ~~  149 (224)
T smart00828      148 EI  149 (224)
T ss_pred             hH
Confidence            43

>TIGR00452 methyltransferase, putative

Probab=99.86  E-value=7.1e-20  Score=164.25  Aligned_cols=165  Identities=18%  Similarity=0.176  Sum_probs=121.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+...++.+++.. ++|
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F  189 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF  189 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence            4566666667789999999999999988887533489999999999987544333222234688999999888754 589


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      |+|++..+++|++++..+|++++++|||||.+++.+.......... .+.. . ...+   .....+.+..++.++|+++
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~-r-y~k~---~nv~flpS~~~L~~~L~~a  264 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKD-R-YAKM---KNVYFIPSVSALKNWLEKV  264 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchH-H-HHhc---cccccCCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999998765432211110 0000 0 0001   1111345789999999999


Q ss_pred             CCeEEEEEecCC
Q 018194          271 GFEVVKEKDLAK  282 (359)
Q Consensus       271 GF~~i~~~~~~~  282 (359)
                      ||+.++..+...
T Consensus       265 GF~~V~i~~~~~  276 (314)
T TIGR00452       265 GFENFRILDVLK  276 (314)
T ss_pred             CCeEEEEEeccC
Confidence            999999887644

Known examples to date are restricted to the proteobacteria.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.85  E-value=1e-20  Score=159.21  Aligned_cols=159  Identities=23%  Similarity=0.194  Sum_probs=120.2

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCccceEEec
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-----LCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      |++|||+|||+|.++..||+. |++|+|+|+++.|++.|+++........     ++++.+.|.+..   .+.||+|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeH
Confidence            589999999999999999995 7999999999999999999944332222     366777777765   3569999999


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc-CCC-CCCCCCHHHHHHHHHhCCCeEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER-GDA-LPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      .+++|+.|+..+++.+.++|||||.+++.+...+-.-.............+.. |.. ...+.++.++..++..+|+++.
T Consensus       166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN  245 (282)
T ss_pred             HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence            99999999999999999999999999997755532211111222222222332 222 3347799999999999999998


Q ss_pred             EEEecCCCCC
Q 018194          276 KEKDLAKPPA  285 (359)
Q Consensus       276 ~~~~~~~~~~  285 (359)
                      ........+.
T Consensus       246 ~v~G~~y~p~  255 (282)
T KOG1270|consen  246 DVVGEVYNPI  255 (282)
T ss_pred             hhhccccccc
Confidence            8776655554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.85  E-value=2.6e-20  Score=168.20  Aligned_cols=155  Identities=23%  Similarity=0.243  Sum_probs=120.4

Q ss_pred             HHHHHhcCC-CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.+++.+.+ .++.+|||||||+|.++..+++. ++.+|+++|+|+.|++.++++...    .+++++.+|+.+++++++
T Consensus       102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~  177 (340)
T PLN02490        102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD  177 (340)
T ss_pred             HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC
Confidence            334444443 46789999999999999888875 457999999999999999987542    368899999999988889


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      +||+|++..+++|++++..+++++.++|||||++++.+......      .......     .....+.+.+++.++|++
T Consensus       178 sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~------~~~r~~~-----~~~~~~~t~eEl~~lL~~  246 (340)
T PLN02490        178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTF------WLSRFFA-----DVWMLFPKEEEYIEWFTK  246 (340)
T ss_pred             ceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcch------hHHHHhh-----hhhccCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999998865332210      0000000     001123478999999999


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||+.++.+++.
T Consensus       247 aGF~~V~i~~i~  258 (340)
T PLN02490        247 AGFKDVKLKRIG  258 (340)
T ss_pred             CCCeEEEEEEcC
Confidence            999999988763

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.85  E-value=9.2e-20  Score=159.92  Aligned_cols=169  Identities=26%  Similarity=0.452  Sum_probs=129.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      +...++..+...++.+|||+|||+|.++..++...  ..+++++|+++.+++.++++....++..++.+..+|+.+.+++
T Consensus        39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence            33445556666678899999999999999998864  4899999999999999999987766666899999999988777


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH--------hhhhcCC-------
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII--------QGIERGD-------  252 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------  252 (359)
                      .++||+|++..++++.+++..+++++.++|+|||.+++.++.......  ......+.        .......       
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSYL  196 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence            789999999999999999999999999999999999998765432211  00000000        0000000       


Q ss_pred             --CCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          253 --ALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       253 --~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                        ....+.+.+++.++|+++||++++...+
T Consensus       197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  226 (239)
T PRK00216        197 AESIRAFPDQEELAAMLEEAGFERVRYRNL  226 (239)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCCceeeeeee
Confidence              0023457789999999999999988775

>PRK05785 hypothetical protein; Provisional

Probab=99.85  E-value=2.9e-20  Score=160.66  Aligned_cols=147  Identities=20%  Similarity=0.203  Sum_probs=107.3

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ++.+|||||||||..+..+++..+.+|+|+|+|+.|++.|+++         ..++++|++++|+++++||+|++.++++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh
Confidence            4679999999999999999886457999999999999998764         2467899999999999999999999999


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH-------HHHHHhhhhcCCC---------CCCCCCHHHHHH
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE-------HVDIIQGIERGDA---------LPGLRSYAEITE  265 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~~~  265 (359)
                      |++|+..++++++|+|||.  +.+.++..++... ....       .......+..+..         ...+.+.+++.+
T Consensus       122 ~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~-~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~  198 (226)
T PRK05785        122 ASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVI-KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE  198 (226)
T ss_pred             ccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999994  3334444332110 0000       1111111111111         113668899999


Q ss_pred             HHHhCCCeEEEEEecC
Q 018194          266 IAKRVGFEVVKEKDLA  281 (359)
Q Consensus       266 ~l~~aGF~~i~~~~~~  281 (359)
                      +|+++| ..++.+.++
T Consensus       199 ~~~~~~-~~~~~~~~~  213 (226)
T PRK05785        199 IFEKYA-DIKVYEERG  213 (226)
T ss_pred             HHHHHh-CceEEEEcc
Confidence            999974 667666653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.84  E-value=8.4e-20  Score=160.45  Aligned_cols=153  Identities=16%  Similarity=0.264  Sum_probs=115.6

Q ss_pred             CCCCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      +.++.+|||||||+|..+..+++   .++++|+|+|+|+.|++.|+++....+...+++++++|+.+++++  .+|+|++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~  131 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL  131 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence            34678999999999999988876   367899999999999999999998887777899999999987754  5899999


Q ss_pred             cccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---------------CCCCCC
Q 018194          197 IEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---------------LPGLRS  259 (359)
Q Consensus       197 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  259 (359)
                      +.+++|+++  ...++++++++|||||.+++.+......... .......+.......+               .....+
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~  210 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKV-GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS  210 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchh-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence            999999863  5689999999999999999988544221111 1111111111111111               112357


Q ss_pred             HHHHHHHHHhCCCeEE
Q 018194          260 YAEITEIAKRVGFEVV  275 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i  275 (359)
                      .++..++|+++||+.+
T Consensus       211 ~~~~~~~L~~aGF~~v  226 (247)
T PRK15451        211 VETHKARLHKAGFEHS  226 (247)
T ss_pred             HHHHHHHHHHcCchhH
Confidence            8999999999999864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.84  E-value=1.3e-19  Score=162.06  Aligned_cols=157  Identities=25%  Similarity=0.359  Sum_probs=124.3

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ..+.++.+|||+|||+|..+..+++..  ..+|+++|+|+.|++.|+++....++. ++++..+|+.++++++++||+|+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi  151 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII  151 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence            456789999999999999888777643  358999999999999999998887764 79999999999888888999999


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      ++.+++|.++...+++++.++|||||++++.++.......   ........ + .........+..++.++|+++||..+
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELP---EEIRNDAE-L-YAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCC---HHHHHhHH-H-HhccccCCCCHHHHHHHHHHCCCCce
Confidence            9999999999999999999999999999998876543221   11111111 1 11112234578899999999999998


Q ss_pred             EEEec
Q 018194          276 KEKDL  280 (359)
Q Consensus       276 ~~~~~  280 (359)
                      +....
T Consensus       227 ~i~~~  231 (272)
T PRK11873        227 TIQPK  231 (272)
T ss_pred             EEEec
Confidence            76543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.84  E-value=1e-20  Score=155.51  Aligned_cols=149  Identities=26%  Similarity=0.367  Sum_probs=110.9

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      +.+....+ ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.           .++.....+....+.++++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~   78 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGS   78 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSS
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccc
Confidence            34444443 567889999999999999999775 5699999999999987           1345555555454567789


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ||+|+++.+++|++|+..+|+++.++|||||++++.++.....    .......+...........+++.+++.++++++
T Consensus        79 fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  154 (161)
T PF13489_consen   79 FDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA  154 (161)
T ss_dssp             EEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred             hhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999999987654320    001111111111111233677999999999999


Q ss_pred             CCeEEE
Q 018194          271 GFEVVK  276 (359)
Q Consensus       271 GF~~i~  276 (359)
                      ||++++
T Consensus       155 G~~iv~  160 (161)
T PF13489_consen  155 GFEIVE  160 (161)
T ss_dssp             TEEEEE
T ss_pred             CCEEEE
Confidence            999986

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.84  E-value=2.4e-19  Score=155.55  Aligned_cols=192  Identities=27%  Similarity=0.423  Sum_probs=138.8

Q ss_pred             chhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--
Q 018194           68 KVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--  145 (359)
Q Consensus        68 ~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--  145 (359)
                      .+++.++.+||..+..+....                  ...+...++..+...++.+|||+|||+|.++..+++...  
T Consensus         3 ~~~~~~~~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~   64 (223)
T TIGR01934         3 EMFDRIAPKYDLLNDLLSFGL------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDR   64 (223)
T ss_pred             hHHHHHHhhhhHHHHHHhccc------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCC
Confidence            356667777777665543211                  123345556666666889999999999999999988543  


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          146 ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       146 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .+++++|+++.+++.++++..   ...++++..+|+.+.+++.++||+|++..++++.+++..+++++.+.|+|||++++
T Consensus        65 ~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934        65 GKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             ceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            599999999999999988765   34578999999999887778999999999999999999999999999999999999


Q ss_pred             EEeeeCcccccCchHHHHHHhhhh-------cCCC---------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          226 YEWVTTDKYEAENKEHVDIIQGIE-------RGDA---------LPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---------~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      .++..... .............+.       ....         ...+.+.+++.++|+++||+++..+.+.
T Consensus       142 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  212 (223)
T TIGR01934       142 LEFSKPAN-ALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLT  212 (223)
T ss_pred             EEecCCCc-hhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeee
Confidence            87654321 111000000000000       0000         0234578899999999999999887663

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.84  E-value=2.1e-20  Score=152.17  Aligned_cols=107  Identities=32%  Similarity=0.557  Sum_probs=97.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEe
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYS  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~  196 (359)
                      +.+.+|||+|||+|.++..+++  .++.+++|+|+|+.|++.|+++++..+++ +++|.++|+.+++  ++ +.||+|++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence            3578999999999999999994  35789999999999999999999998887 8999999999976  55 79999999


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ..+++|++++..+++++.++|+|||.+++.+..
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999999999999999999999999999998766

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.83  E-value=6.7e-19  Score=154.48  Aligned_cols=143  Identities=25%  Similarity=0.354  Sum_probs=113.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++..     +++.++.+|+.+.++++++||+|++..++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence            4579999999999999999885 45689999999999999887653     36899999999988888999999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +|.+++..++.++.++|+|||.+++.++....     ..........     ....+.+..++.++++++ |..+.....
T Consensus       109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~~~  177 (240)
T TIGR02072       109 QWCDDLSQALSELARVLKPGGLLAFSTFGPGT-----LHELRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLEEE  177 (240)
T ss_pred             hhccCHHHHHHHHHHHcCCCcEEEEEeCCccC-----HHHHHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence            99999999999999999999999987543321     1111111111     122456788999999998 987765443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.83  E-value=4e-19  Score=145.00  Aligned_cols=218  Identities=13%  Similarity=0.156  Sum_probs=150.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ...++..+++.+..+|.|+|||+|..+..|+++ +++.++|+|.|+.|++.|+++.      ++++|..+|+.++. +..
T Consensus        19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p~~   91 (257)
T COG4106          19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-PEQ   91 (257)
T ss_pred             HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-CCC
Confidence            345677788888899999999999999999985 8899999999999999998773      47899999999875 457


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH-HHHHh-----hhhcCC--CCCCCCCHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH-VDIIQ-----GIERGD--ALPGLRSYA  261 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~--~~~~~~~~~  261 (359)
                      ..|+++++.+++++||...+|..+...|.|||.+.+.   ++++........ .....     ....+.  ....+.++.
T Consensus        92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ---mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a  168 (257)
T COG4106          92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ---MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA  168 (257)
T ss_pred             ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE---CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence            8999999999999999999999999999999999984   344444333221 11111     111111  123466889


Q ss_pred             HHHHHHHhCCCeEEEEEecCCCC------CCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Q 018194          262 EITEIAKRVGFEVVKEKDLAKPP------AQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTR  335 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  335 (359)
                      .+-++|...+-++--.++...++      +..|-....+.++                +.+-+.++-..++......+.+
T Consensus       169 ~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~----------------L~~L~e~~~~~FL~~Y~~~l~~  232 (257)
T COG4106         169 AYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPY----------------LDRLDEEERQRFLDRYLALLAE  232 (257)
T ss_pred             HHHHHhCcccceeeeeeeeccccCCCccchhhheecccccee----------------ccccCHHHHHHHHHHHHHHHHH
Confidence            99999998887776555544443      2344433322222                1122223333344433333332


Q ss_pred             ------cCccccccceeeEEEecCC
Q 018194          336 ------GGETGIFTPMHMVLLRKPH  354 (359)
Q Consensus       336 ------~~~~~~~~~~~~v~arKP~  354 (359)
                            +|+.-+-+|..|+||+|++
T Consensus       233 aYP~~~dGr~ll~FpRlFiVA~~~~  257 (257)
T COG4106         233 AYPPRADGRVLLAFPRLFIVATRGE  257 (257)
T ss_pred             hCCCccCCcEEeecceEEEEEecCC
Confidence                  3555566678899999864

>TIGR00740 methyltransferase, putative

Probab=99.83  E-value=1.2e-19  Score=159.08  Aligned_cols=153  Identities=17%  Similarity=0.261  Sum_probs=116.2

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      .++.+|||+|||+|..+..+++.   ++++++|+|+|+.|++.|+++....+...+++++++|+.+++++  .+|+|++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~  129 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN  129 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence            46789999999999999998874   57899999999999999999988766556799999999988764  58999999


Q ss_pred             ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC---------------CCCCCCCH
Q 018194          198 EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD---------------ALPGLRSY  260 (359)
Q Consensus       198 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~  260 (359)
                      .+++|++  ++..++++++++|||||.+++.+........ ...........+....               ......+.
T Consensus       130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~  208 (239)
T TIGR00740       130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK-INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI  208 (239)
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence            9999986  4678999999999999999998765432111 1111111111111100               12235688


Q ss_pred             HHHHHHHHhCCCeEEE
Q 018194          261 AEITEIAKRVGFEVVK  276 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i~  276 (359)
                      +++.++|+++||..++
T Consensus       209 ~~~~~~l~~aGF~~~~  224 (239)
T TIGR00740       209 ETHKARLKNVGFSHVE  224 (239)
T ss_pred             HHHHHHHHHcCCchHH
Confidence            9999999999998644

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.83  E-value=4.9e-19  Score=150.11  Aligned_cols=148  Identities=20%  Similarity=0.271  Sum_probs=117.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      .+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++.....++. ++++...|+.+.+++ ++||
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD   97 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYD   97 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcC
Confidence            3455555667789999999999999999986 679999999999999999998887764 689999999887764 6799


Q ss_pred             eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      +|++..+++|++  +...+++++.++|||||++++.+.........              ..+.+...+.+++.+.++  
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~el~~~~~--  161 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------------TVGFPFAFKEGELRRYYE--  161 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--------------CCCCCCccCHHHHHHHhC--
Confidence            999999998876  57899999999999999977655433321110              112334567889999887  


Q ss_pred             CCeEEEEEe
Q 018194          271 GFEVVKEKD  279 (359)
Q Consensus       271 GF~~i~~~~  279 (359)
                      ||+++....
T Consensus       162 ~~~~~~~~~  170 (197)
T PRK11207        162 GWEMVKYNE  170 (197)
T ss_pred             CCeEEEeeC
Confidence            999887643

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.82  E-value=8.7e-19  Score=159.15  Aligned_cols=164  Identities=14%  Similarity=0.213  Sum_probs=124.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      .+.+.+.+...++.+|||||||+|.++..+++. ++.+++++|. +.+++.+++++...++.++++++.+|+.+.+++. 
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-  215 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-  215 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-
Confidence            355666777788899999999999999999884 6789999997 7999999999999988889999999998766543 


Q ss_pred             ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                       +|+|++..++|++++  ...+++++++.|+|||++++.|+...+...+......................+.+++.++|
T Consensus       216 -~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll  294 (306)
T TIGR02716       216 -ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL  294 (306)
T ss_pred             -CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence             699999999998864  35899999999999999999997654332221111111111111111122345579999999


Q ss_pred             HhCCCeEEEE
Q 018194          268 KRVGFEVVKE  277 (359)
Q Consensus       268 ~~aGF~~i~~  277 (359)
                      +++||+.++.
T Consensus       295 ~~aGf~~v~~  304 (306)
T TIGR02716       295 ESLGYKDVTM  304 (306)
T ss_pred             HHcCCCeeEe
Confidence            9999998864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.82  E-value=1e-18  Score=157.07  Aligned_cols=149  Identities=21%  Similarity=0.291  Sum_probs=103.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----DSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+.    ..++.|...|+.++   +++||+|+|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence            5789999999999999999985 67999999999999999998876421    23578889998654   4789999999


Q ss_pred             ccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---CCCCCCHHHHHHHHHhCCC
Q 018194          198 EATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---LPGLRSYAEITEIAKRVGF  272 (359)
Q Consensus       198 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGF  272 (359)
                      .+++|+++  ...+++.+.+ +.+||.++.  +....    ..............+..   ...+++.+++.++|+++||
T Consensus       220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liIs--~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf  292 (315)
T PLN02585        220 DVLIHYPQDKADGMIAHLAS-LAEKRLIIS--FAPKT----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGW  292 (315)
T ss_pred             CEEEecCHHHHHHHHHHHHh-hcCCEEEEE--eCCcc----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCC
Confidence            99999875  3356676665 456555442  11110    00011111111121111   1124578999999999999


Q ss_pred             eEEEEEecC
Q 018194          273 EVVKEKDLA  281 (359)
Q Consensus       273 ~~i~~~~~~  281 (359)
                      +++..+...
T Consensus       293 ~v~~~~~~~  301 (315)
T PLN02585        293 KVARREMTA  301 (315)
T ss_pred             EEEEEEEee
Confidence            998766543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.82  E-value=6.1e-20  Score=136.93  Aligned_cols=95  Identities=37%  Similarity=0.545  Sum_probs=84.8

Q ss_pred             EEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCH
Q 018194          127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKL  206 (359)
Q Consensus       127 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  206 (359)
                      ||+|||+|..+..+++.++.+|+++|+|+.+++.++++....    ++.+..+|+.++|+++++||+|++..+++|++++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~   76 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP   76 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeeccCH
Confidence            899999999999999986789999999999999999987643    4679999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEE
Q 018194          207 EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       207 ~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..+++++.|+|||||++++
T Consensus        77 ~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   77 EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.82  E-value=8.6e-19  Score=141.95  Aligned_cols=158  Identities=19%  Similarity=0.253  Sum_probs=122.0

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCccceE
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCE-VVCGNFLKMP-FEDNHFDGA  194 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~v  194 (359)
                      ++.......|||||||||..-..+--.++++|+++|+++.|-+.+.+.+++.. +.++. |+.++.+++| ++++++|.|
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtV  149 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTV  149 (252)
T ss_pred             HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeE
Confidence            44434445789999999998877765678999999999999999999988773 45676 9999999998 889999999


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC--C-CCCCCCCHHHHHHHHHhCC
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG--D-ALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~aG  271 (359)
                      ++..+||.+.|+.+.|+++.|+|||||++++.|+....     ...+..+++.....  . ......-..+.-+.|+++-
T Consensus       150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~-----y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~  224 (252)
T KOG4300|consen  150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE-----YGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAE  224 (252)
T ss_pred             EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc-----chHHHHHHHHHhchhhheeccceEEehhHHHHhhhcc
Confidence            99999999999999999999999999999999876642     12233333333222  0 0111222356778899999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |+.+..+..
T Consensus       225 f~~~~~kr~  233 (252)
T KOG4300|consen  225 FSIDSCKRF  233 (252)
T ss_pred             cccchhhcc
Confidence            999887665

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.81  E-value=3.6e-19  Score=137.17  Aligned_cols=105  Identities=30%  Similarity=0.409  Sum_probs=90.7

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCccceEEecc-
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMPFEDNHFDGAYSIE-  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~-  198 (359)
                      |+.+|||||||+|.++..+++ .++++|+|+|+|+.+++.++++....+..++++++++|+ ..... .+.||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence            578999999999999999999 578999999999999999999997777888999999999 44333 35699999999 


Q ss_pred             ccccc---CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          199 ATCHA---PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       199 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .++++   ++...+++++++.|+|||++++.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            44433   457899999999999999999853

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.80  E-value=3.7e-18  Score=144.49  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      +.+.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.++++....++.  +.+...|+...+++ ++||+
T Consensus        22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~   97 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDF   97 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCE
Confidence            445555556789999999999999999985 679999999999999999988877764  77888888766654 67999


Q ss_pred             EEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          194 AYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       194 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |++..+++|++  +...+++++.++|||||++++.++........              +...+...+..++.++++  +
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------------~~~~~~~~~~~el~~~f~--~  161 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------------HMPFSFTFKEDELRQYYA--D  161 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------------CCCcCccCCHHHHHHHhC--C
Confidence            99999999885  56799999999999999987776544322111              111234568899999986  5


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |+++.....
T Consensus       162 ~~~~~~~e~  170 (195)
T TIGR00477       162 WELLKYNEA  170 (195)
T ss_pred             CeEEEeecc
Confidence            999887643

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.78  E-value=2.5e-17  Score=143.93  Aligned_cols=168  Identities=21%  Similarity=0.243  Sum_probs=123.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  189 (359)
                      .+.+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.++++....+.  ++++...|+.+.+ ...+
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~  113 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG  113 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC
Confidence            455556665667899999999999999988885 67999999999999999998876554  4788888887754 3457


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-c-CCCCCCCCCHHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-R-GDALPGLRSYAEITEIA  267 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l  267 (359)
                      +||+|++..+++|.+++..+++++.++|+|||.+++..+..................... . ......+.+..++.++|
T Consensus       114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  193 (233)
T PRK05134        114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL  193 (233)
T ss_pred             CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence            899999999999999999999999999999999998654321100000000000111111 1 11123466889999999


Q ss_pred             HhCCCeEEEEEecC
Q 018194          268 KRVGFEVVKEKDLA  281 (359)
Q Consensus       268 ~~aGF~~i~~~~~~  281 (359)
                      +++||++++...+.
T Consensus       194 ~~~Gf~~v~~~~~~  207 (233)
T PRK05134        194 RQAGLEVQDITGLH  207 (233)
T ss_pred             HHCCCeEeeeeeEE
Confidence            99999999886654

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.78  E-value=2e-17  Score=143.01  Aligned_cols=165  Identities=19%  Similarity=0.266  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHhcC--CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          106 ATRLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       106 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      ..+.+.+.+++.+.  ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+.++|+.+
T Consensus        37 ~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  115 (219)
T TIGR02021        37 GRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS  115 (219)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            34445566666665  567889999999999999999885 579999999999999999998877665689999999987


Q ss_pred             CCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---CCCCC
Q 018194          184 MPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---LPGLR  258 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  258 (359)
                      ++   ++||+|++..+++|++  +...+++++.+++++++.+.+.   ...   ...... ........+..   ...+.
T Consensus       116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~---~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~  185 (219)
T TIGR02021       116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA---PKT---AWLAFL-KMIGELFPGSSRATSAYLH  185 (219)
T ss_pred             CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC---CCc---hHHHHH-HHHHhhCcCcccccceEEe
Confidence            64   7899999999998885  4678999999999877665542   110   011111 11111111111   11345


Q ss_pred             CHHHHHHHHHhCCCeEEEEEecC
Q 018194          259 SYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       259 ~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      +.+++.++++++||+++..+...
T Consensus       186 ~~~~~~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       186 PMTDLERALGELGWKIVREGLVS  208 (219)
T ss_pred             cHHHHHHHHHHcCceeeeeeccc
Confidence            88999999999999999887664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.77  E-value=6.9e-17  Score=134.75  Aligned_cols=129  Identities=26%  Similarity=0.330  Sum_probs=107.3

Q ss_pred             CCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ++++.+|||+|||+|..+..++. .++++|+++|+|+.|++.++++.+..+++ +++++++|+.+++. .++||+|+++.
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc
Confidence            34588999999999999999986 46789999999999999999999998875 49999999998776 67999999975


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                          +.++..+++.+.++|||||++++....                            .....+.++.+..|+.+....
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~lv~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~  168 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGRFLALKGR----------------------------DPEEEIAELPKALGGKVEEVI  168 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeEEEEEeCC----------------------------ChHHHHHHHHHhcCceEeeeE
Confidence                457889999999999999999985311                            123467777788899988776


Q ss_pred             ecCC
Q 018194          279 DLAK  282 (359)
Q Consensus       279 ~~~~  282 (359)
                      .++.
T Consensus       169 ~~~~  172 (187)
T PRK00107        169 ELTL  172 (187)
T ss_pred             EEec
Confidence            6643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.76  E-value=2.7e-17  Score=147.71  Aligned_cols=138  Identities=16%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....++  ++++...|+...++ +++||+|++..+++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~  195 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLM  195 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhh
Confidence            4459999999999999999985 68999999999999999999888776  58899999877655 57899999999999


Q ss_pred             ccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          202 HAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       202 ~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                      |++  +...+++++.++|+|||++++..+.....+..              ....+...+..++.+.++.  |+++....
T Consensus       196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~--------------~~p~~~~~~~~el~~~~~~--~~i~~~~e  259 (287)
T PRK12335        196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC--------------PMPFSFTFKEGELKDYYQD--WEIVKYNE  259 (287)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC--------------CCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence            886  57899999999999999987765443322110              1112345678999999964  99888743

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.76  E-value=2.2e-17  Score=143.41  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=119.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+...+..-.|.+|||||||.|..+..++......|+|+|+++...-..+....-.+....+.+...-++++|. .+.|
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F  183 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF  183 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence            446666644578999999999999999999875568999999998776654433333333344555467777776 6899


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+|+|..+|+|..++...|++++..|+|||.+++-..........   .+. -...+.......-+.|...+..+|+++|
T Consensus       184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~---~L~-P~~rYa~m~nv~FiPs~~~L~~wl~r~g  259 (315)
T PF08003_consen  184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENT---VLV-PEDRYAKMRNVWFIPSVAALKNWLERAG  259 (315)
T ss_pred             CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCce---EEc-cCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999855443221110   000 0001111111112458899999999999


Q ss_pred             CeEEEEEecCCC
Q 018194          272 FEVVKEKDLAKP  283 (359)
Q Consensus       272 F~~i~~~~~~~~  283 (359)
                      |+.+++-+...+
T Consensus       260 F~~v~~v~~~~T  271 (315)
T PF08003_consen  260 FKDVRCVDVSPT  271 (315)
T ss_pred             CceEEEecCccC
Confidence            999998887544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.73  E-value=1.6e-16  Score=137.95  Aligned_cols=156  Identities=27%  Similarity=0.347  Sum_probs=118.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l  200 (359)
                      .+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+.. ++++...|+.+.+.. .++||+|++..++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            4789999999999999988874 568999999999999999988766542 588999998876543 3789999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHH------HHhhhhc-CCCCCCCCCHHHHHHHHHhCCCe
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD------IIQGIER-GDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      +|+.++..+++++.++|+|||.+++..+....     ......      ....... ......+.+..++.++++++||+
T Consensus       123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~  197 (224)
T TIGR01983       123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP-----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR  197 (224)
T ss_pred             HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc-----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence            99999999999999999999999886543211     011111      0000101 11122456788999999999999


Q ss_pred             EEEEEecCCCC
Q 018194          274 VVKEKDLAKPP  284 (359)
Q Consensus       274 ~i~~~~~~~~~  284 (359)
                      +++...+...+
T Consensus       198 i~~~~~~~~~~  208 (224)
T TIGR01983       198 VKDVKGLVYNP  208 (224)
T ss_pred             eeeeeeEEeeh
Confidence            99987665444

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.73  E-value=3.3e-16  Score=130.48  Aligned_cols=99  Identities=23%  Similarity=0.371  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|||+|||+|.++..++.. ++++|+++|+|+.|++.++++.++.++. +++++++|+.+++ ..++||+|++..  
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh--
Confidence            4789999999999999998864 4579999999999999999998888774 6999999998864 357899999876  


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        +.+...+++.+.++|+|||.+++.
T Consensus       118 --~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       118 --LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             --hhCHHHHHHHHHHhcCCCCEEEEE
Confidence              346677889999999999999974

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.73  E-value=4.3e-16  Score=135.82  Aligned_cols=151  Identities=23%  Similarity=0.289  Sum_probs=108.6

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.+..+|+..   .+++||+|++..+
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~  136 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV  136 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence            456789999999999999999885 568999999999999999998887765679999999533   3578999999999


Q ss_pred             ccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC---CCCCCCCCHHHHHHHHHhCCCeE
Q 018194          200 TCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG---DALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       200 l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                      ++|++  +...+++++.+.+++++.+.+.   ...   ... ............   .......+..++.++++++||++
T Consensus       137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~---~~~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  209 (230)
T PRK07580        137 LIHYPQEDAARMLAHLASLTRGSLIFTFA---PYT---PLL-ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV  209 (230)
T ss_pred             hhcCCHHHHHHHHHHHHhhcCCeEEEEEC---Ccc---HHH-HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence            98876  4568888988877544443321   110   000 111111111111   11123457889999999999999


Q ss_pred             EEEEecC
Q 018194          275 VKEKDLA  281 (359)
Q Consensus       275 i~~~~~~  281 (359)
                      ++...+.
T Consensus       210 ~~~~~~~  216 (230)
T PRK07580        210 VRTERIS  216 (230)
T ss_pred             Eeeeecc
Confidence            9987764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.72  E-value=1.4e-16  Score=131.89  Aligned_cols=145  Identities=18%  Similarity=0.302  Sum_probs=106.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      +.+.++..++.++||+|||.|+.+..||+. |..|+++|+|+..++.+++.++..+++  |+....|+.+..++ +.||+
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~   97 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDF   97 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEE
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCE
Confidence            444555556779999999999999999996 789999999999999999988888775  99999999887765 68999


Q ss_pred             EEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          194 AYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       194 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |++..+++|++  ....+++++...++|||++++..+...+.++...              ..+..+.+.++.+.+.  |
T Consensus        98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~--------------~~~f~~~~~EL~~~y~--d  161 (192)
T PF03848_consen   98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS--------------PFPFLLKPGELREYYA--D  161 (192)
T ss_dssp             EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS----------------S--B-TTHHHHHTT--T
T ss_pred             EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC--------------CCCcccCHHHHHHHhC--C
Confidence            99988888885  4678999999999999999887665443332211              1123345568888776  6


Q ss_pred             CeEEEEE
Q 018194          272 FEVVKEK  278 (359)
Q Consensus       272 F~~i~~~  278 (359)
                      |+++...
T Consensus       162 W~il~y~  168 (192)
T PF03848_consen  162 WEILKYN  168 (192)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            9998753

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK06202 hypothetical protein; Provisional

Probab=99.71  E-value=1.3e-16  Score=139.18  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      ...++.+|||+|||+|.++..|++.     ++.+|+|+|+|+.|++.|+++...    .++++...+...++.++++||+
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~  132 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDV  132 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccE
Confidence            3456789999999999999888752     346999999999999999887543    2467777777777666789999


Q ss_pred             EEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcc-cccCchHHHHHH-hhhhcCCC---CCCCCCHHHHHHH
Q 018194          194 AYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDK-YEAENKEHVDII-QGIERGDA---LPGLRSYAEITEI  266 (359)
Q Consensus       194 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~  266 (359)
                      |+++.+++|+++.  ..+++++.++++  |.+++.++..+.. +........... ..+.....   ....++.+++.++
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l  210 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL  210 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence            9999999999874  579999999998  5666655444311 000000000000 01111111   2246789999999


Q ss_pred             HHhCCCeEEEEEec
Q 018194          267 AKRVGFEVVKEKDL  280 (359)
Q Consensus       267 l~~aGF~~i~~~~~  280 (359)
                      +++ ||++.....+
T Consensus       211 l~~-Gf~~~~~~~~  223 (232)
T PRK06202        211 APQ-GWRVERQWPF  223 (232)
T ss_pred             hhC-CCeEEeccce
Confidence            999 9998776544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.71  E-value=8.6e-16  Score=129.44  Aligned_cols=139  Identities=14%  Similarity=0.180  Sum_probs=110.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+..++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....++. +++++.+|+.. ++ 
T Consensus        18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~-   94 (187)
T PRK08287         18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-EL-   94 (187)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hc-
Confidence            33445666777788999999999999999999874 5679999999999999999998887764 69999999853 33 


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      .++||+|++.....   ....+++.+.+.|+|||++++.....                           .+..++.+++
T Consensus        95 ~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~---------------------------~~~~~~~~~l  144 (187)
T PRK08287         95 PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL---------------------------ENLHSALAHL  144 (187)
T ss_pred             CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH---------------------------hhHHHHHHHH
Confidence            36899999876543   45678999999999999998743211                           1235778899


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      ++.||+.++...+
T Consensus       145 ~~~g~~~~~~~~~  157 (187)
T PRK08287        145 EKCGVSELDCVQL  157 (187)
T ss_pred             HHCCCCcceEEEE
Confidence            9999988876655

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.70  E-value=1.4e-16  Score=130.44  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          149 VGITINEYQVNRARLHNKKA--GLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       149 ~g~D~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|+|+|+.|++.|+++....  +...+++++++|+.++|+++++||+|++.+++++++|+..++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998776532  2234799999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCcccccCchHHHHHH--------hhhhcC-CC-------CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          227 EWVTTDKYEAENKEHVDII--------QGIERG-DA-------LPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~-------~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      |+...+.....  ....+.        ..+... ..       ...+.+++++.++|+++||+.+....+.
T Consensus        81 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~  149 (160)
T PLN02232         81 DFNKSNQSVTT--FMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS  149 (160)
T ss_pred             ECCCCChHHHH--HHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence            88754321000  000000        000000 00       1235688999999999999999876653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.69  E-value=5.7e-16  Score=132.18  Aligned_cols=112  Identities=25%  Similarity=0.277  Sum_probs=95.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .+...+++.+.+.++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.+++++...++..+++++.+|+.+...
T Consensus        59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~  138 (205)
T PRK13944         59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE  138 (205)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence            345667778888889999999999999999988753  469999999999999999999888877779999999987544


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..++||+|++..++++++      +++.+.|+|||++++.
T Consensus       139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIP  172 (205)
T ss_pred             cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence            457999999999887765      4688999999999873

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.69  E-value=5.1e-17  Score=122.65  Aligned_cols=94  Identities=30%  Similarity=0.511  Sum_probs=80.2

Q ss_pred             EEEECCCCChHHHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc-cc
Q 018194          126 ILDVGCGVGGPMRAIAAHS----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE-AT  200 (359)
Q Consensus       126 vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l  200 (359)
                      |||+|||+|..+..+++..    ..+++|+|+|+.|++.++++....+.  +++++++|+.++++.+++||+|++.. ++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            7999999999999999853    37999999999999999999887654  69999999999888788999999954 48


Q ss_pred             cccC--CHHHHHHHHHhccCCCC
Q 018194          201 CHAP--KLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       201 ~~~~--~~~~~l~~~~~~LkpgG  221 (359)
                      +|++  +...+++++.++|||||
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Confidence            9986  47899999999999998

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.69  E-value=4.1e-16  Score=150.32  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~  188 (359)
                      ...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.+++..   +..++++++++|+..  +++++
T Consensus        26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCC
Confidence            455667777667889999999999999999986 469999999999998876533   223579999999963  56778


Q ss_pred             CccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ++||+|++..+++|+++  ...+++++.++|||||++++.|.+.......            ........+.....+.++
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  169 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------------KRKNNPTHYREPRFYTKV  169 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------------cccCCCCeecChHHHHHH
Confidence            89999999999999986  5799999999999999999987543211000            001122234567799999


Q ss_pred             HHhCCCeEEE
Q 018194          267 AKRVGFEVVK  276 (359)
Q Consensus       267 l~~aGF~~i~  276 (359)
                      +.++||....
T Consensus       170 f~~~~~~~~~  179 (475)
T PLN02336        170 FKECHTRDED  179 (475)
T ss_pred             HHHheeccCC
Confidence            9999998764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.69  E-value=1.9e-15  Score=126.41  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=106.5

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ..+...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++....+.  +++++.+|+.+..  .++||+|+
T Consensus        13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi   87 (179)
T TIGR00537        13 ANLRELKPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVIL   87 (179)
T ss_pred             HHHHhcCCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEE
Confidence            33444556799999999999999999864 4999999999999999999887664  5889999987643  45899999


Q ss_pred             ecccccccCC---------------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194          196 SIEATCHAPK---------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL  254 (359)
Q Consensus       196 ~~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (359)
                      ++..+++.++                     ...+++++.++|||||.+++......                       
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------  144 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------  144 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------
Confidence            9987765542                     35689999999999999998642211                       


Q ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          255 PGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       255 ~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                          ...++.+.|++.||+........
T Consensus       145 ----~~~~~~~~l~~~gf~~~~~~~~~  167 (179)
T TIGR00537       145 ----GEPDTFDKLDERGFRYEIVAERG  167 (179)
T ss_pred             ----ChHHHHHHHHhCCCeEEEEEEee
Confidence                23578899999999998877653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK06922 hypothetical protein; Provisional

Probab=99.69  E-value=1.9e-16  Score=151.62  Aligned_cols=112  Identities=22%  Similarity=0.386  Sum_probs=94.4

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccce
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDG  193 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~  193 (359)
                      ..+..++.+|||+|||+|..+..+++ .++.+|+|+|+|+.|++.|+++....+  .++.++++|+.+++  +++++||+
T Consensus       413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv  490 (677)
T PRK06922        413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT  490 (677)
T ss_pred             HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE
Confidence            34445688999999999999988887 467899999999999999998865543  35888999998877  77889999


Q ss_pred             EEeccccccc-------------CCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          194 AYSIEATCHA-------------PKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       194 v~~~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      |+++.++|++             .+...++++++++|||||++++.+...
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence            9999988865             246799999999999999999987543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.69  E-value=3.3e-15  Score=127.54  Aligned_cols=153  Identities=19%  Similarity=0.222  Sum_probs=110.3

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-----------GLDSLCEVVCGNFLKMPFE-  187 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~-  187 (359)
                      ..++.+|||+|||.|..+..||++ |.+|+|+|+|+.+++.+.+.....           .-..++++.++|+.+++.. 
T Consensus        32 ~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        32 LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            346779999999999999999986 789999999999999864322100           0123689999999987632 


Q ss_pred             CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194          188 DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITE  265 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (359)
                      .+.||.|+-..+++|++  .....++.+.++|||||++++..+...+..                ..+.+...+.+++.+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~----------------~~gpp~~~~~~eL~~  174 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE----------------MAGPPFSVSPAEVEA  174 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC----------------CCCcCCCCCHHHHHH
Confidence            36799999999999986  467899999999999998777655432110                012334578899999


Q ss_pred             HHHhCCCeEEEEEecCCCCCCchhh
Q 018194          266 IAKRVGFEVVKEKDLAKPPAQPWWT  290 (359)
Q Consensus       266 ~l~~aGF~~i~~~~~~~~~~~~w~~  290 (359)
                      ++.. +|++...+....+...+|..
T Consensus       175 ~f~~-~~~i~~~~~~~~~~~~~~~~  198 (213)
T TIGR03840       175 LYGG-HYEIELLESRDVLEDNPRFG  198 (213)
T ss_pred             HhcC-CceEEEEeeccccccCchhh
Confidence            8864 57766665544332235543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK04266 fibrillarin; Provisional

Probab=99.68  E-value=1.6e-15  Score=130.51  Aligned_cols=139  Identities=15%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCcc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~f  191 (359)
                      .+++.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+++...   .|+.++.+|+.+.    +++ ++|
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~  142 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKV  142 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccC
Confidence            5788899999999999999999999864 359999999999999887776543   4789999998752    122 569


Q ss_pred             ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEE-EeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSY-EWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      |+|++...   .++ ...+++++.++|||||++++. .+..   .+.....                ....++..++|++
T Consensus       143 D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~---~d~~~~~----------------~~~~~~~~~~l~~  200 (226)
T PRK04266        143 DVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARS---IDVTKDP----------------KEIFKEEIRKLEE  200 (226)
T ss_pred             CEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCcCCH----------------HHHHHHHHHHHHH
Confidence            99986432   122 235689999999999999983 2211   0000000                0011345699999


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||+.++..++.
T Consensus       201 aGF~~i~~~~l~  212 (226)
T PRK04266        201 GGFEILEVVDLE  212 (226)
T ss_pred             cCCeEEEEEcCC
Confidence            999999988873

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.68  E-value=1.2e-15  Score=129.19  Aligned_cols=146  Identities=16%  Similarity=0.265  Sum_probs=104.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccceEEecc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-PFEDNHFDGAYSIE  198 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~  198 (359)
                      +++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++        +++++++|+.+ + ++++++||+|+++.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence            36789999999999999999876667899999999999888642        36888999876 3 36678999999999


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc----------CCCCCCCCCHHHHHHHHH
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER----------GDALPGLRSYAEITEIAK  268 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~  268 (359)
                      +++|++|+..+++++.+.+++   +++.-    +.+.........+......          ......+.+.+++.++++
T Consensus        84 ~l~~~~d~~~~l~e~~r~~~~---~ii~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~  156 (194)
T TIGR02081        84 TLQATRNPEEILDEMLRVGRH---AIVSF----PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG  156 (194)
T ss_pred             HhHcCcCHHHHHHHHHHhCCe---EEEEc----CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence            999999999999999887664   33321    0110000000000000000          001124678999999999


Q ss_pred             hCCCeEEEEEecC
Q 018194          269 RVGFEVVKEKDLA  281 (359)
Q Consensus       269 ~aGF~~i~~~~~~  281 (359)
                      ++||++++...+.
T Consensus       157 ~~Gf~v~~~~~~~  169 (194)
T TIGR02081       157 ELNLRILDRAAFD  169 (194)
T ss_pred             HCCCEEEEEEEec
Confidence            9999999987664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.68  E-value=3.5e-16  Score=128.93  Aligned_cols=206  Identities=18%  Similarity=0.249  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHhhhcCCc----------------cccccchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHH
Q 018194           46 EVEDNYKEYWKFFKRPK----------------ETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRL  109 (359)
Q Consensus        46 ~~~~~~~~y~~~~~~~~----------------~~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  109 (359)
                      +.....+.|.+..+.+.                +...+.....|+..||..++-|+..+-.+..|+-           ..
T Consensus        44 ~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~~LVdkL~Y~v-----------P~  112 (287)
T COG4976          44 EFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKPPSAYVETLFDQYAERFDHILVDKLGYSV-----------PE  112 (287)
T ss_pred             cHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCcc-----------HH
Confidence            44566777777766544                2334455578999999999999887766666552           23


Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FE  187 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~  187 (359)
                      ....++..+...+-.++||+|||||.....|-... .+++|+|+|.+|++.|.++-    +-+  ...+.|+... + ..
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg----~YD--~L~~Aea~~Fl~~~~  185 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKG----LYD--TLYVAEAVLFLEDLT  185 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhcc----chH--HHHHHHHHHHhhhcc
Confidence            34445555666667899999999999998887653 58999999999999987752    211  2334444321 1 34


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ++.||+|++..++.++.+.+.++--+...|+|||.+.++.-.......            +.-+.....-++...+.+++
T Consensus       186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~------------f~l~ps~RyAH~~~YVr~~l  253 (287)
T COG4976         186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG------------FVLGPSQRYAHSESYVRALL  253 (287)
T ss_pred             CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC------------eecchhhhhccchHHHHHHH
Confidence            678999999999999999999999999999999999985322221110            00011111234567889999


Q ss_pred             HhCCCeEEEEEecC
Q 018194          268 KRVGFEVVKEKDLA  281 (359)
Q Consensus       268 ~~aGF~~i~~~~~~  281 (359)
                      +..||+++++++++
T Consensus       254 ~~~Gl~~i~~~~tt  267 (287)
T COG4976         254 AASGLEVIAIEDTT  267 (287)
T ss_pred             HhcCceEEEeeccc
Confidence            99999999998874

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.68  E-value=1.4e-15  Score=124.02  Aligned_cols=148  Identities=21%  Similarity=0.385  Sum_probs=111.7

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCcc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-PFEDNHF  191 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~f  191 (359)
                      |.++  +.||.+|||+|||.|.+...|.+..+++.+|+|++++.+..+.++    |    +.++++|+.+ + .|++++|
T Consensus         7 I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sF   76 (193)
T PF07021_consen    7 IAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSF   76 (193)
T ss_pred             HHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCc
Confidence            4444  357899999999999999999987789999999999998887654    2    6799999987 3 3899999


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-cCCC-----CC---------C
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-RGDA-----LP---------G  256 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~---------~  256 (359)
                      |.|+++.+++++.++..+|+++.|+   |...++.-    +++     .+......+. .|..     +|         +
T Consensus        77 D~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsF----PNF-----g~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih  144 (193)
T PF07021_consen   77 DYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSF----PNF-----GHWRNRLQLLLRGRMPVTKALPYEWYDTPNIH  144 (193)
T ss_pred             cEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEe----cCh-----HHHHHHHHHHhcCCCCCCCCCCCcccCCCCcc
Confidence            9999999999999999999999877   44555421    111     1222111111 1111     11         3


Q ss_pred             CCCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194          257 LRSYAEITEIAKRVGFEVVKEKDLAKP  283 (359)
Q Consensus       257 ~~~~~~~~~~l~~aGF~~i~~~~~~~~  283 (359)
                      +.|..+++++.++.|+++++...+...
T Consensus       145 ~~Ti~DFe~lc~~~~i~I~~~~~~~~~  171 (193)
T PF07021_consen  145 LCTIKDFEDLCRELGIRIEERVFLDGG  171 (193)
T ss_pred             cccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence            668999999999999999998777543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.68  E-value=1.3e-17  Score=125.54  Aligned_cols=96  Identities=29%  Similarity=0.462  Sum_probs=65.3

Q ss_pred             EEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEeccccccc
Q 018194          127 LDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       127 LDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~  203 (359)
                      ||||||+|.++..+.+. +..+++|+|+|+.|++.++++....+.. +......+..+..  ...++||+|++..+++|+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999999999885 5689999999999999999888876532 3344444443322  122599999999999999


Q ss_pred             CCHHHHHHHHHhccCCCCEE
Q 018194          204 PKLEDVYAEVFRVLKPGSLY  223 (359)
Q Consensus       204 ~~~~~~l~~~~~~LkpgG~l  223 (359)
                      +++..++++++++|||||+|
T Consensus        80 ~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.67  E-value=7.4e-16  Score=131.09  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=88.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMP--FEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD~v~~~  197 (359)
                      ++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.++++....++ .++.++++|+ ..++  +++++||+|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            5789999999999999999875 567999999999999999999888776 5799999999 6655  667899999987


Q ss_pred             ccccccC--------CHHHHHHHHHhccCCCCEEEEE
Q 018194          198 EATCHAP--------KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...+..        ....+++++.++|||||.+++.
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            6543322        2478999999999999999984

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.67  E-value=4.7e-15  Score=125.98  Aligned_cols=133  Identities=20%  Similarity=0.355  Sum_probs=105.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~  188 (359)
                      ...+..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+++.+++.+++++...++.+++.++.+|+.+. +...
T Consensus        30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~  109 (198)
T PRK00377         30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN  109 (198)
T ss_pred             HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence            44456778889999999999999999998874  34699999999999999999998888667899999999763 2224


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      +.||+|++..   ...++..+++.+.++|||||++++. +..                          +.+..++.+.|+
T Consensus       110 ~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~-~~~--------------------------~~~~~~~~~~l~  159 (198)
T PRK00377        110 EKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVID-AIL--------------------------LETVNNALSALE  159 (198)
T ss_pred             CCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEE-eec--------------------------HHHHHHHHHHHH
Confidence            6899999854   2357789999999999999999862 211                          012357888899


Q ss_pred             hCCCeE
Q 018194          269 RVGFEV  274 (359)
Q Consensus       269 ~aGF~~  274 (359)
                      +.||..
T Consensus       160 ~~g~~~  165 (198)
T PRK00377        160 NIGFNL  165 (198)
T ss_pred             HcCCCe
Confidence            999943

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.67  E-value=1.9e-15  Score=123.51  Aligned_cols=145  Identities=15%  Similarity=0.181  Sum_probs=104.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+...++...-.++||+|||.|.++..|+.+. .+++++|+|+..++.|+++....   ++|++.+.|+.+. .|+++|
T Consensus        33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~F  107 (201)
T PF05401_consen   33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRF  107 (201)
T ss_dssp             HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-E
T ss_pred             HHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCe
Confidence            334445666666899999999999999999975 49999999999999999998753   4799999999774 467999


Q ss_pred             ceEEecccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          192 DGAYSIEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       192 D~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      |+|++..+++++.+   ...++..+...|+|||.+++..+...            ....      +.+....+.+.++|.
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------------~c~~------wgh~~ga~tv~~~~~  169 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------------NCRR------WGHAAGAETVLEMLQ  169 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------------HHHH------TT-S--HHHHHHHHH
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------------cccc------cCcccchHHHHHHHH
Confidence            99999999999964   56789999999999999999654211            1111      113346788999998


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      +. |..|+....
T Consensus       170 ~~-~~~~~~~~~  180 (201)
T PF05401_consen  170 EH-LTEVERVEC  180 (201)
T ss_dssp             HH-SEEEEEEEE
T ss_pred             HH-hhheeEEEE
Confidence            87 666665444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.67  E-value=1.8e-15  Score=128.48  Aligned_cols=103  Identities=24%  Similarity=0.436  Sum_probs=87.5

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      +.++.+|||+|||+|..+..+++. ++.+++|+|+|+.|++.|+++.      +++.+.++|+.+ ++++++||+|++..
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            446779999999999999999885 5789999999999999998763      246888999988 78889999999999


Q ss_pred             cccccC--CHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          199 ATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       199 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      +++|++  +...+++++.+++  ++.+++.++..+
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            999985  4678999999987  568888776543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.66  E-value=1.2e-14  Score=124.48  Aligned_cols=156  Identities=19%  Similarity=0.190  Sum_probs=112.4

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-----------GLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~~  187 (359)
                      ...++.+|||+|||.|..+..||++ |.+|+|+|+|+..++.+.+.....           -...+|++.++|+.+++..
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            3456779999999999999999986 789999999999999864321100           0124689999999987532


Q ss_pred             -CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          188 -DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       188 -~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                       ...||.|+-..+++|++  .....++.+.++|+|||.+++......+.-                ..+.|...+.+++.
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~----------------~~gPp~~~~~~el~  176 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE----------------LAGPPFSVSDEEVE  176 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc----------------CCCCCCCCCHHHHH
Confidence             25899999999999987  467999999999999997665443322110                01234567889999


Q ss_pred             HHHHhCCCeEEEEEecCCCCCCchhhhh
Q 018194          265 EIAKRVGFEVVKEKDLAKPPAQPWWTRL  292 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~~~~~~~~w~~~~  292 (359)
                      +++.. +|++...+....+...+|+...
T Consensus       177 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~  203 (218)
T PRK13255        177 ALYAG-CFEIELLERQDVLEDNPKFVKK  203 (218)
T ss_pred             HHhcC-CceEEEeeeccccccCchhhhc
Confidence            99953 3887777665444444555433

>PRK14967 putative methyltransferase; Provisional

Probab=99.66  E-value=1.7e-14  Score=124.98  Aligned_cols=134  Identities=22%  Similarity=0.257  Sum_probs=101.0

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ..+.+.++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....+.  +++++.+|+.+. +++++||+|+
T Consensus        30 ~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi  106 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVV  106 (223)
T ss_pred             HhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEE
Confidence            3345677889999999999999999885334999999999999999998887665  488999998763 4567899999


Q ss_pred             ecccccccC---------------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194          196 SIEATCHAP---------------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL  254 (359)
Q Consensus       196 ~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (359)
                      ++-......                     ....+++++.++|||||+++++....                        
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------------  162 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------------  162 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------------------------
Confidence            974322111                     14567889999999999998742111                        


Q ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          255 PGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       255 ~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                         ....++.+.+++.||.......
T Consensus       163 ---~~~~~~~~~l~~~g~~~~~~~~  184 (223)
T PRK14967        163 ---SGVERTLTRLSEAGLDAEVVAS  184 (223)
T ss_pred             ---cCHHHHHHHHHHCCCCeEEEEe
Confidence               1234677888999998655544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.66  E-value=3e-15  Score=117.32  Aligned_cols=112  Identities=18%  Similarity=0.268  Sum_probs=92.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~  188 (359)
                      ...+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....+.. +++++.+|+.. .+...
T Consensus         8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~   86 (124)
T TIGR02469         8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSL   86 (124)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhc
Confidence            444666677777889999999999999999985 5579999999999999999988877664 68999998765 23334


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++||.|++.....   ...++++++.+.|||||++++.
T Consensus        87 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        87 PEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence            6899999976543   3568999999999999999874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.65  E-value=5.3e-15  Score=130.20  Aligned_cols=150  Identities=23%  Similarity=0.278  Sum_probs=105.2

Q ss_pred             hhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 018194           86 WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN  165 (359)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~  165 (359)
                      ..+++.+.|+...+     .......+.+...  ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++.
T Consensus        90 i~i~p~~afgtg~h-----~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~  162 (250)
T PRK00517         90 IELDPGMAFGTGTH-----PTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENA  162 (250)
T ss_pred             EEECCCCccCCCCC-----HHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH
Confidence            44556666665432     1222233333332  3468899999999999998877753346999999999999999999


Q ss_pred             HHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194          166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII  245 (359)
Q Consensus       166 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  245 (359)
                      ...++..++.+..+|        .+||+|+++....   ....++.++.++|||||++++......              
T Consensus       163 ~~~~~~~~~~~~~~~--------~~fD~Vvani~~~---~~~~l~~~~~~~LkpgG~lilsgi~~~--------------  217 (250)
T PRK00517        163 ELNGVELNVYLPQGD--------LKADVIVANILAN---PLLELAPDLARLLKPGGRLILSGILEE--------------  217 (250)
T ss_pred             HHcCCCceEEEccCC--------CCcCEEEEcCcHH---HHHHHHHHHHHhcCCCcEEEEEECcHh--------------
Confidence            887764444443322        2799999875422   356788999999999999998532211              


Q ss_pred             hhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          246 QGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                                   ..+++.+.+++.||+++.....
T Consensus       218 -------------~~~~v~~~l~~~Gf~~~~~~~~  239 (250)
T PRK00517        218 -------------QADEVLEAYEEAGFTLDEVLER  239 (250)
T ss_pred             -------------hHHHHHHHHHHCCCEEEEEEEe
Confidence                         2357889999999999876554

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.64  E-value=4.3e-15  Score=127.33  Aligned_cols=112  Identities=25%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      ......+++.+.+.++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++....+. .+++++++|+....
T Consensus        62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~  140 (212)
T PRK13942         62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGY  140 (212)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCC
Confidence            4556677888888999999999999999999988753  36999999999999999999988876 47999999998755


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+.++||+|++..+..+++      ..+.+.|||||++++.
T Consensus       141 ~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 EENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence            5668999999987765443      4567789999999884

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.64  E-value=6.1e-15  Score=130.38  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEECCCCCh----HHHHHHhh-c-----CCEEEEEeCCHHHHHHHHHHHHH----cC---------------
Q 018194          119 DVKAGDRILDVGCGVGG----PMRAIAAH-S-----RANVVGITINEYQVNRARLHNKK----AG---------------  169 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~----~~~~l~~~-~-----~~~v~g~D~s~~~~~~a~~~~~~----~~---------------  169 (359)
                      ...++.+|+|+|||+|.    ++..+++. +     +.+|+|+|+|+.|++.|++..-.    .+               
T Consensus        96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~  175 (264)
T smart00138       96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED  175 (264)
T ss_pred             CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence            34456899999999997    44445442 1     46999999999999999875310    01               


Q ss_pred             -------CCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          170 -------LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       170 -------~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                             +..+|+|.++|+.+.+++.++||+|+|.++++|++  +..+++++++++|+|||++++.
T Consensus       176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                   22478999999999877788999999999999996  4568999999999999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14968 putative methyltransferase; Provisional

Probab=99.63  E-value=1.6e-14  Score=121.87  Aligned_cols=136  Identities=28%  Similarity=0.395  Sum_probs=104.8

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCccce
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL-CEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~fD~  193 (359)
                      ...+...++.+|||+|||+|.++..++.. +.+++++|+|+.+++.++++....++..+ +.++++|+.+ ++.+++||+
T Consensus        16 ~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~   93 (188)
T PRK14968         16 AENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDV   93 (188)
T ss_pred             HHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceE
Confidence            33444467889999999999999999987 78999999999999999999887776433 8899999876 345568999


Q ss_pred             EEeccccccc---------------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC
Q 018194          194 AYSIEATCHA---------------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD  252 (359)
Q Consensus       194 v~~~~~l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (359)
                      |+++..+.+.                     .....+++++.++|||||.+++...                        
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~------------------------  149 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS------------------------  149 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc------------------------
Confidence            9987654331                     1145689999999999999887421                        


Q ss_pred             CCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          253 ALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                         .....+++.++++++||++.....
T Consensus       150 ---~~~~~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        150 ---SLTGEDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             ---ccCCHHHHHHHHHHCCCeeeeeee
Confidence               112335788999999999876543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.63  E-value=2.2e-14  Score=114.24  Aligned_cols=146  Identities=22%  Similarity=0.262  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhcC---CCCCC-EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194          105 DATRLHEEMAVDLID---VKAGD-RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG  179 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~  179 (359)
                      .+.+++.+++.....   +.... +|||+|||.|.+...|++. .....+|+|.|+..++.|+..++..+.++.|+|.+.
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~  125 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL  125 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence            344555555555443   44333 9999999999999999984 345799999999999999999999999888999999


Q ss_pred             CCCCCCCCCCccceEEeccccccc---CC-----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC
Q 018194          180 NFLKMPFEDNHFDGAYSIEATCHA---PK-----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG  251 (359)
Q Consensus       180 d~~~~~~~~~~fD~v~~~~~l~~~---~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (359)
                      |+.+..+..++||+|+--..+..+   |+     +...+..+.++|+|||+++|...                       
T Consensus       126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-----------------------  182 (227)
T KOG1271|consen  126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-----------------------  182 (227)
T ss_pred             eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-----------------------
Confidence            999877777899999865544433   22     35678889999999999998521                       


Q ss_pred             CCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          252 DALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                           -++.+++.+.++..||+...+.
T Consensus       183 -----N~T~dELv~~f~~~~f~~~~tv  204 (227)
T KOG1271|consen  183 -----NFTKDELVEEFENFNFEYLSTV  204 (227)
T ss_pred             -----CccHHHHHHHHhcCCeEEEEee
Confidence                 1356799999999999877653

>PLN03075 nicotianamine synthase; Provisional

Probab=99.63  E-value=1.1e-14  Score=128.32  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             cCCCCCCEEEEECCCCChHHHH-HHh--hcCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          118 IDVKAGDRILDVGCGVGGPMRA-IAA--HSRANVVGITINEYQVNRARLHNKK-AGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~-l~~--~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      +...++.+|+|||||.|.++.. ++.  .++.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+
T Consensus       119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl  198 (296)
T PLN03075        119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV  198 (296)
T ss_pred             hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE
Confidence            3333778999999998855443 332  3678999999999999999999964 78888899999999886433478999


Q ss_pred             EEeccccccc--CCHHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEATCHA--PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |++. +++++  +++.++++++.+.|+|||.+++.
T Consensus       199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            9999 88887  58999999999999999999984

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.63  E-value=9.1e-15  Score=125.88  Aligned_cols=112  Identities=23%  Similarity=0.263  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      ......+++.+.+.++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...++ .+++++.+|+.+..
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~  141 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC
Confidence            3445667777888899999999999999999999864  34799999999999999999999887 57999999997754


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...++||+|++.....+++      ..+.+.|+|||++++.
T Consensus       142 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKIP------EALIDQLKEGGILVMP  176 (215)
T ss_pred             cccCCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence            4456899999887655543      5678899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.62  E-value=6.4e-14  Score=113.67  Aligned_cols=139  Identities=21%  Similarity=0.291  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +..+...+..|.+.++++++|||||||..+.+++. .+.++|+++|-++++++..++++++.+. +|+.++.+|+.+.-.
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~   98 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP   98 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence            34455677788999999999999999999999995 3678999999999999999999999994 689999999977422


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ...+||.|+....    .+.+.+|+.+...|||||++++....                           +.+.....+.
T Consensus        99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait---------------------------lE~~~~a~~~  147 (187)
T COG2242          99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT---------------------------LETLAKALEA  147 (187)
T ss_pred             CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec---------------------------HHHHHHHHHH
Confidence            2237999999886    46789999999999999999983211                           1133467788


Q ss_pred             HHhCCC-eEEEEE
Q 018194          267 AKRVGF-EVVKEK  278 (359)
Q Consensus       267 l~~aGF-~~i~~~  278 (359)
                      +++.|| ++++..
T Consensus       148 ~~~~g~~ei~~v~  160 (187)
T COG2242         148 LEQLGGREIVQVQ  160 (187)
T ss_pred             HHHcCCceEEEEE
Confidence            999999 665543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.61  E-value=1.9e-14  Score=128.38  Aligned_cols=102  Identities=24%  Similarity=0.429  Sum_probs=82.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S---RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+.+.+. .++.+|||+|||+|.++..+++. +   +.+++|+|+|+.+++.|+++.      +++.+.++|+.++|++
T Consensus        76 ~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~  148 (272)
T PRK11088         76 NLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFA  148 (272)
T ss_pred             HHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCc
Confidence            33444443 34578999999999999998874 2   248999999999999997753      3689999999999999


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +++||+|++.+..       ..++++.|+|||||++++..
T Consensus       149 ~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        149 DQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             CCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEe
Confidence            9999999987641       23688999999999999864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.60  E-value=2.3e-14  Score=131.25  Aligned_cols=137  Identities=26%  Similarity=0.301  Sum_probs=108.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ...++.....+++.+|||+|||+|.++..++. .+.+++|+|+++.|++.+++++...++.. +.+.++|+.++++++++
T Consensus       171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~  248 (329)
T TIGR01177       171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES  248 (329)
T ss_pred             HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence            44556666778899999999999999888766 47899999999999999999998888764 89999999999887889


Q ss_pred             cceEEecccccc--------c-CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194          191 FDGAYSIEATCH--------A-PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA  261 (359)
Q Consensus       191 fD~v~~~~~l~~--------~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (359)
                      ||+|+++-....        . .-...+++++.++|||||++++....                              ..
T Consensus       249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------------------~~  298 (329)
T TIGR01177       249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------------------RI  298 (329)
T ss_pred             CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------------------------------CC
Confidence            999999643211        1 11578999999999999999874211                              01


Q ss_pred             HHHHHHHhCCCeEEEEEec
Q 018194          262 EITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~~~~~  280 (359)
                      ++.+.++++|| ++.....
T Consensus       299 ~~~~~~~~~g~-i~~~~~~  316 (329)
T TIGR01177       299 DLESLAEDAFR-VVKRFEV  316 (329)
T ss_pred             CHHHHHhhcCc-chheeee
Confidence            45577999999 7765543

This family is found exclusively in the Archaea.

>PTZ00146 fibrillarin; Provisional

Probab=99.60  E-value=6.2e-14  Score=123.08  Aligned_cols=136  Identities=14%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCcc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---PFEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~f  191 (359)
                      .+.+.++++|||+|||+|.++..+++..  ...|+++|+|+.+++...+.+...   .||.++..|+...   ....++|
T Consensus       127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCC
Confidence            4567899999999999999999999864  358999999998665554443322   4789999998652   1234589


Q ss_pred             ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH----HHH
Q 018194          192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI----TEI  266 (359)
Q Consensus       192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  266 (359)
                      |+|++...   .+| ...++.++.++|||||.+++. +-.... +                    .-.+++++    .++
T Consensus       204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~-ika~~i-d--------------------~g~~pe~~f~~ev~~  258 (293)
T PTZ00146        204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIIS-IKANCI-D--------------------STAKPEVVFASEVQK  258 (293)
T ss_pred             CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEE-Eecccc-c--------------------cCCCHHHHHHHHHHH
Confidence            99998774   244 446667999999999999983 222110 0                    01112222    388


Q ss_pred             HHhCCCeEEEEEec
Q 018194          267 AKRVGFEVVKEKDL  280 (359)
Q Consensus       267 l~~aGF~~i~~~~~  280 (359)
                      |+++||+.++..++
T Consensus       259 L~~~GF~~~e~v~L  272 (293)
T PTZ00146        259 LKKEGLKPKEQLTL  272 (293)
T ss_pred             HHHcCCceEEEEec
Confidence            99999999988776

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.59  E-value=4.3e-14  Score=116.98  Aligned_cols=118  Identities=29%  Similarity=0.396  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 018194          103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF  181 (359)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~  181 (359)
                      +....+.+.+.+...    ++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...++.. ++++..|.
T Consensus        16 ~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~   90 (170)
T PF05175_consen   16 LDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDL   90 (170)
T ss_dssp             HHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESST
T ss_pred             CCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccc
Confidence            344444455544444    6779999999999999999985 44589999999999999999999988765 99999999


Q ss_pred             CCCCCCCCccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEE
Q 018194          182 LKMPFEDNHFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       182 ~~~~~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+. .++++||+|+++-.++.-.+     ...++++..+.|||||.++++
T Consensus        91 ~~~-~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen   91 FEA-LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             TTT-CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccc-ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            773 34689999999977654433     578999999999999999774

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.59  E-value=8.2e-14  Score=123.12  Aligned_cols=138  Identities=24%  Similarity=0.322  Sum_probs=105.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ...+.++..+. ..+.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++....++. +++++++|+.+ +++
T Consensus        75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~  151 (251)
T TIGR03534        75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLP  151 (251)
T ss_pred             HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCc
Confidence            33444444443 24569999999999999999985 5679999999999999999999887775 79999999976 456


Q ss_pred             CCccceEEecccccc------cC--------------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          188 DNHFDGAYSIEATCH------AP--------------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~------~~--------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      .++||+|+++-....      +.                    ....+++++.++|+|||.+++..              
T Consensus       152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~--------------  217 (251)
T TIGR03534       152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI--------------  217 (251)
T ss_pred             CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE--------------
Confidence            789999998643221      10                    12467899999999999998731              


Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                                    ......++.++|+++||+.++.
T Consensus       218 --------------~~~~~~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       218 --------------GYDQGEAVRALFEAAGFADVET  239 (251)
T ss_pred             --------------CccHHHHHHHHHHhCCCCceEE
Confidence                          0112357889999999988765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03438 probable methyltransferase

Probab=99.59  E-value=4e-14  Score=127.89  Aligned_cols=117  Identities=14%  Similarity=0.171  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-  183 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-  183 (359)
                      .+.....++..+  .++.+|||+|||+|..+..|++..  +.+|+++|+|+.|++.++++........++.++++|+.+ 
T Consensus        50 l~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        50 LERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            344445555544  356799999999999999998863  579999999999999999887654322357788999986 


Q ss_pred             CCCCCC----ccceEEecccccccC--CHHHHHHHHHhccCCCCEEEE
Q 018194          184 MPFEDN----HFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       184 ~~~~~~----~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .+++..    ...++++..++++++  +...+|++++++|+|||.+++
T Consensus       128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            343332    223444555677775  466899999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.58  E-value=6.6e-14  Score=125.68  Aligned_cols=127  Identities=21%  Similarity=0.263  Sum_probs=98.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++....++..++.+...+...  ...++||+|+++...
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~  235 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILA  235 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCH
Confidence            367899999999999998888754469999999999999999999988877777777776433  335789999997653


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      .   ....++.++.++|||||++++......                           ...++.+.+++. |++++....
T Consensus       236 ~---~l~~ll~~~~~~LkpgG~li~sgi~~~---------------------------~~~~v~~~~~~~-f~~~~~~~~  284 (288)
T TIGR00406       236 E---VIKELYPQFSRLVKPGGWLILSGILET---------------------------QAQSVCDAYEQG-FTVVEIRQR  284 (288)
T ss_pred             H---HHHHHHHHHHHHcCCCcEEEEEeCcHh---------------------------HHHHHHHHHHcc-CceeeEecc
Confidence            3   356789999999999999998532111                           235677778776 988776543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.58  E-value=1.1e-14  Score=123.11  Aligned_cols=104  Identities=25%  Similarity=0.325  Sum_probs=87.2

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~  197 (359)
                      ...+|||||||+|.++..+++ .++..|+|+|+++.+++.|+++....++. |++++++|+.+++   ++++++|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            456999999999999999998 46789999999999999999998888875 8999999997643   456789999988


Q ss_pred             ccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          198 EATCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...+...        ...+++++.++|||||.+++.
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            75443322        157999999999999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.58  E-value=4.1e-14  Score=118.08  Aligned_cols=103  Identities=22%  Similarity=0.309  Sum_probs=77.3

Q ss_pred             CCCC-EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGD-RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      .++. .++|+|||+|..++.++.++ .+|+++|+|+.|++.|+++....-......+...+..++.-.+++.|+|++..+
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence            3443 89999999998888888875 599999999999999988643322111122333333333334789999999999


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +|++ |.+.+++++.|+||+.|.++.
T Consensus       110 ~HWF-dle~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  110 VHWF-DLERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             HHhh-chHHHHHHHHHHcCCCCCEEE
Confidence            9988 789999999999998775444

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=7.6e-14  Score=122.57  Aligned_cols=155  Identities=26%  Similarity=0.362  Sum_probs=110.4

Q ss_pred             cCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194           88 WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      +++.+.|+.+++..+     ....+.+-+.+.  ++.+|||+|||+|.+++..++....+|+|+|++|..++.+++++..
T Consensus       135 lDPGlAFGTG~HpTT-----~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~  207 (300)
T COG2264         135 LDPGLAFGTGTHPTT-----SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL  207 (300)
T ss_pred             EccccccCCCCChhH-----HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence            456666665544332     233333333332  7899999999999999999886445799999999999999999999


Q ss_pred             cCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh
Q 018194          168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG  247 (359)
Q Consensus       168 ~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  247 (359)
                      ++++..+.....+....+ ..++||+|+++-...   -...+...+.+.|||||++++.-....                
T Consensus       208 N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~----------------  267 (300)
T COG2264         208 NGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE---VLVELAPDIKRLLKPGGRLILSGILED----------------  267 (300)
T ss_pred             cCCchhhhcccccchhhc-ccCcccEEEehhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh----------------
Confidence            887643334344443322 236999999976321   245888999999999999998532111                


Q ss_pred             hhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          248 IERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                                 ..+.+.+.++++||+++++...
T Consensus       268 -----------q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         268 -----------QAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             -----------HHHHHHHHHHhCCCeEeEEEec
Confidence                       1257888999999999987654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.56  E-value=4.7e-14  Score=129.54  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=92.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLD--SLCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~  188 (359)
                      +.+++.++...+.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++++..+..  .++++...|+... ++.
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~  296 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEP  296 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCC
Confidence            45666776655679999999999999999874 6789999999999999999998766543  3689999998653 345


Q ss_pred             CccceEEeccccccc---C--CHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHA---P--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~---~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+||+|+++-.++..   .  ...++++++.++|+|||.++++
T Consensus       297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            689999998766543   2  2458899999999999999986

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.56  E-value=3.7e-14  Score=125.89  Aligned_cols=151  Identities=29%  Similarity=0.396  Sum_probs=106.6

Q ss_pred             cCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194           88 WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      .++.+.|+.+     ..+..+...+.+.+.  ..++.+|||+|||+|.++...++....+|+++|++|..++.|++++..
T Consensus       134 idPg~AFGTG-----~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~  206 (295)
T PF06325_consen  134 IDPGMAFGTG-----HHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL  206 (295)
T ss_dssp             ESTTSSS-SS-----HCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred             ECCCCcccCC-----CCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence            4455555443     334445555555555  346789999999999999988886445899999999999999999999


Q ss_pred             cCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh
Q 018194          168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG  247 (359)
Q Consensus       168 ~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  247 (359)
                      +++..++.+.  ...+  ....+||+|+++-...   -...++..+.++|+|||++++.-....                
T Consensus       207 N~~~~~~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~~----------------  263 (295)
T PF06325_consen  207 NGVEDRIEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILEE----------------  263 (295)
T ss_dssp             TT-TTCEEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEGG----------------
T ss_pred             cCCCeeEEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccHH----------------
Confidence            9998766552  2222  2358999999976432   246778889999999999998643322                


Q ss_pred             hhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          248 IERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                                 ..+.+.+.+++ ||++++....
T Consensus       264 -----------~~~~v~~a~~~-g~~~~~~~~~  284 (295)
T PF06325_consen  264 -----------QEDEVIEAYKQ-GFELVEEREE  284 (295)
T ss_dssp             -----------GHHHHHHHHHT-TEEEEEEEEE
T ss_pred             -----------HHHHHHHHHHC-CCEEEEEEEE
Confidence                       23577788876 9999887664

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.55  E-value=3e-14  Score=118.85  Aligned_cols=152  Identities=22%  Similarity=0.248  Sum_probs=109.7

Q ss_pred             EEEEECCCCChHHHHHHh-hc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEec
Q 018194          125 RILDVGCGVGGPMRAIAA-HS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHFDGAYSI  197 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~-~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~  197 (359)
                      +||+||||.|.....+.+ .+  +..|+++|.||..++..+++.....  .++.....|+...    +...+++|+|++.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence            899999999999988877 33  3899999999999999988765432  3455555565442    3567899999999


Q ss_pred             ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCCCC-CCCCHHHHHHHHHhCCCe
Q 018194          198 EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDALP-GLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       198 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~aGF~  273 (359)
                      ++|..++  ....++.+++++|||||.+++.|+...+.-..... ...--...+..+++.. .+++.+++.+++.++||.
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~  231 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE  231 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence            9998875  57899999999999999999987655321100000 0000011223344443 577999999999999999


Q ss_pred             EEEEE
Q 018194          274 VVKEK  278 (359)
Q Consensus       274 ~i~~~  278 (359)
                      .++..
T Consensus       232 ~~~~~  236 (264)
T KOG2361|consen  232 EVQLE  236 (264)
T ss_pred             hhccc
Confidence            87653

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.55  E-value=1.8e-13  Score=116.13  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=90.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~  186 (359)
                      .....+...+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++++..++ .+++++.+|+.+ ++.
T Consensus        27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~  105 (196)
T PRK07402         27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ  105 (196)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence            34445677778888999999999999999999864 567999999999999999999988876 479999999865 222


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|.++...    ..+...+++++.++|+|||++++..
T Consensus       106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            123467765532    2356899999999999999999864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.54  E-value=4.5e-13  Score=119.83  Aligned_cols=104  Identities=21%  Similarity=0.283  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++..+++++++|+.+ +++.++||+|+++-.
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence            44579999999999999999985 5689999999999999999999988887789999999865 234568999998621


Q ss_pred             ------c-------cccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194          200 ------T-------CHAP------------KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 ------l-------~~~~------------~~~~~l~~~~~~LkpgG~l~~  225 (359)
                            +       .|-|            ....+++++.++|+|||++++
T Consensus       199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                  1       1111            135678999999999999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=1.8e-13  Score=116.04  Aligned_cols=137  Identities=22%  Similarity=0.290  Sum_probs=115.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..+|+..+++.||++|||.|.|+|.++..|+..  +..+|+.+|+.++..+.|++++...++.+++++..+|+.+.-+++
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            467888999999999999999999999999974  446999999999999999999999999888999999999866554


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                       .||+|+..     +|++..++..+.+.|||||.++++..+..                           ......+.|+
T Consensus       163 -~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~ve---------------------------Qv~kt~~~l~  209 (256)
T COG2519         163 -DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVE---------------------------QVEKTVEALR  209 (256)
T ss_pred             -ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCHH---------------------------HHHHHHHHHH
Confidence             89999884     58999999999999999999998532111                           1235566788


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      +.||..++...+
T Consensus       210 ~~g~~~ie~~E~  221 (256)
T COG2519         210 ERGFVDIEAVET  221 (256)
T ss_pred             hcCccchhhhee
Confidence            889998876554

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.54  E-value=1.7e-13  Score=117.76  Aligned_cols=111  Identities=23%  Similarity=0.225  Sum_probs=90.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....++..+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...++. ++++..+|..+...+.
T Consensus        65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~  142 (212)
T PRK00312         65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAY  142 (212)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcC
Confidence            345566777888899999999999999998888764 59999999999999999999888765 5999999986632234


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++||+|++....+++      .+.+.+.|+|||++++..
T Consensus       143 ~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        143 APFDRILVTAAAPEI------PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             CCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEE
Confidence            789999998766554      356789999999998853

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.54  E-value=2.3e-13  Score=116.44  Aligned_cols=141  Identities=23%  Similarity=0.252  Sum_probs=114.4

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNH  190 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  190 (359)
                      +..+.......+|||+|||+|.++..++++ ..+++++||+++.+.+.|++..+..++.+++++++.|+.++.  ....+
T Consensus        36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~  115 (248)
T COG4123          36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS  115 (248)
T ss_pred             HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence            445556666889999999999999999997 559999999999999999999999999999999999998864  34457


Q ss_pred             cceEEeccccccc------------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC
Q 018194          191 FDGAYSIEATCHA------------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD  252 (359)
Q Consensus       191 fD~v~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (359)
                      ||+|+|+--..-.                  -+.+.+++.+.++|||||.+.++-                         
T Consensus       116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~-------------------------  170 (248)
T COG4123         116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH-------------------------  170 (248)
T ss_pred             cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe-------------------------
Confidence            9999997543321                  136789999999999999999852                         


Q ss_pred             CCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                         +.....++.++|++.+|...+...+..
T Consensus       171 ---r~erl~ei~~~l~~~~~~~k~i~~V~p  197 (248)
T COG4123         171 ---RPERLAEIIELLKSYNLEPKRIQFVYP  197 (248)
T ss_pred             ---cHHHHHHHHHHHHhcCCCceEEEEecC
Confidence               001235788999999999988877643

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.53  E-value=4.5e-13  Score=120.20  Aligned_cols=103  Identities=24%  Similarity=0.306  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc--
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE--  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~--  198 (359)
                      +..+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++..+++++++|+.+ +++.++||+|+++-  
T Consensus       114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy  192 (284)
T TIGR00536       114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPY  192 (284)
T ss_pred             CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence            3369999999999999999985 5579999999999999999999888876679999999876 34445899999862  


Q ss_pred             -----------cccccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194          199 -----------ATCHAP------------KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 -----------~l~~~~------------~~~~~l~~~~~~LkpgG~l~~  225 (359)
                                 +..|-|            ....++.++.+.|+|||++++
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                       222322            255788999999999999886

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.53  E-value=1.2e-13  Score=126.15  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=93.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCC
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDN  189 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  189 (359)
                      .+...+....+..+||||||+|..+..+|+ .++..++|+|+++.++..+.+++...++. |+.++++|+..+  .++++
T Consensus       113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCC
Confidence            445555555677999999999999999998 47789999999999999999999888875 799999999764  46789


Q ss_pred             ccceEEecccccccCCH------HHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKL------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++|.|++++...|....      ..+++++.|+|+|||.+.+.
T Consensus       192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            99999987654432221      68999999999999999884

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.53  E-value=3.5e-14  Score=110.11  Aligned_cols=105  Identities=31%  Similarity=0.471  Sum_probs=88.8

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEAT  200 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l  200 (359)
                      |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+..  +++++||+|+++-..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            568999999999999999886458999999999999999999999988788999999998865  678999999998766


Q ss_pred             cccC--------CHHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHAP--------KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~--------~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....        ....+++++.++|||||.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            5321        24688999999999999998853

...

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.7e-13  Score=112.54  Aligned_cols=112  Identities=26%  Similarity=0.294  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+...+++.+.++++++|||||||+|..+.-|++..+ +|+.+|..+...+.|+++.+..|+. ||.++++|...---+
T Consensus        58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~  135 (209)
T COG2518          58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE  135 (209)
T ss_pred             cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC
Confidence            34567788999999999999999999999999999655 9999999999999999999999986 599999999773224


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .++||.|+...+...+|      +.+.+.|||||++++..
T Consensus       136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPV  169 (209)
T ss_pred             CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEE
Confidence            58999999999887776      35678899999999853

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.52  E-value=7.3e-13  Score=121.83  Aligned_cols=140  Identities=17%  Similarity=0.200  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ..+.+.+.+...+  .++.+|||+|||+|.++..++. .++++|+++|+|+.+++.|+++....+.  +++++++|+.+.
T Consensus       237 eTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~  312 (423)
T PRK14966        237 ETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT  312 (423)
T ss_pred             cHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence            3444555555543  3556999999999999999887 4678999999999999999999887764  699999998764


Q ss_pred             CCC-CCccceEEeccccccc---------------------CC----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCc
Q 018194          185 PFE-DNHFDGAYSIEATCHA---------------------PK----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN  238 (359)
Q Consensus       185 ~~~-~~~fD~v~~~~~l~~~---------------------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  238 (359)
                      .++ .++||+|+++-.....                     .|    ...+++.+.+.|+|||.+++. ..         
T Consensus       313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE-iG---------  382 (423)
T PRK14966        313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE-HG---------  382 (423)
T ss_pred             ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE-EC---------
Confidence            332 4589999996532100                     01    236677777899999998762 11         


Q ss_pred             hHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          239 KEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                                        ....+.+.+++++.||..++.
T Consensus       383 ------------------~~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        383 ------------------FDQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             ------------------ccHHHHHHHHHHHCCCcEEEE
Confidence                              112467889999999987664

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.52  E-value=2.7e-13  Score=117.21  Aligned_cols=140  Identities=21%  Similarity=0.343  Sum_probs=110.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .....|+..+++.||++|||.|.|+|.++..|++.  +..+|+.+|+.++..+.|+++++..++.+++++.+.|+.+..+
T Consensus        27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred             chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence            34567888999999999999999999999999984  4579999999999999999999999999999999999976444


Q ss_pred             C---CCccceEEecccccccCCHHHHHHHHHhcc-CCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194          187 E---DNHFDGAYSIEATCHAPKLEDVYAEVFRVL-KPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       187 ~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                      +   +..+|.|+..     +|++..++..+.+.| ||||+++++..+..                           ....
T Consensus       107 ~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------------------Qv~~  154 (247)
T PF08704_consen  107 DEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------------------------QVQK  154 (247)
T ss_dssp             STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------------------------HHHH
T ss_pred             cccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------------------------HHHH
Confidence            2   3679999874     589999999999999 89999998532221                           1235


Q ss_pred             HHHHHHhCCCeEEEEEec
Q 018194          263 ITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~  280 (359)
                      ..+.|++.||..+++..+
T Consensus       155 ~~~~L~~~gf~~i~~~Ev  172 (247)
T PF08704_consen  155 TVEALREHGFTDIETVEV  172 (247)
T ss_dssp             HHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHCCCeeeEEEEE
Confidence            667888999999886655

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=9e-13  Score=118.10  Aligned_cols=140  Identities=24%  Similarity=0.292  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +...+.+.......++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++.. .....++.++.+|+.+. +
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~  171 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L  171 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C
Confidence            334444444555667789999999999999999885 46899999999999999999887 33345799999998653 3


Q ss_pred             CCCccceEEeccccc--------------cc------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH
Q 018194          187 EDNHFDGAYSIEATC--------------HA------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE  240 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~--------------~~------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  240 (359)
                      +.++||+|+++-...              +-            .....+++++.++|+|||++++.. .           
T Consensus       172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g-----------  239 (275)
T PRK09328        172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G-----------  239 (275)
T ss_pred             CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-----------
Confidence            457899999863211              10            123568888889999999998721 0           


Q ss_pred             HHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          241 HVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                                      ......+.+++++.||..++.
T Consensus       240 ----------------~~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        240 ----------------YDQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             ----------------chHHHHHHHHHHhCCCceeEE
Confidence                            011246888999999986655

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.52  E-value=7.9e-13  Score=119.30  Aligned_cols=102  Identities=22%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc--
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA--  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~--  199 (359)
                      +.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.|++++...++.++++++++|+.+ .++.++||+|+++-.  
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi  212 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV  212 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence            368999999999999999874 5689999999999999999999988887789999999865 234568999998621  


Q ss_pred             -----------ccccC------------CHHHHHHHHHhccCCCCEEEE
Q 018194          200 -----------TCHAP------------KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 -----------l~~~~------------~~~~~l~~~~~~LkpgG~l~~  225 (359)
                                 +.|-|            ....+++++.+.|+|||++++
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence                       11211            135788999999999999987

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=2e-13  Score=124.71  Aligned_cols=112  Identities=19%  Similarity=0.268  Sum_probs=90.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      +.++..+......+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++.+..++.  .++...|....  ..++
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~  261 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGR  261 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCC
Confidence            33445554444568999999999999999885 5679999999999999999999887764  57778887653  2578


Q ss_pred             cceEEecccccccC-----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAP-----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ||+|+++..+|+..     ....+++++.+.|||||.++++.
T Consensus       262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            99999998887632     35789999999999999998853

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.50  E-value=1.5e-13  Score=116.56  Aligned_cols=113  Identities=27%  Similarity=0.354  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      +......+++.+.+++|++|||||||+|..+..++...+  ..|+++|+.+..++.|++++...++. |+.++++|....
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g  135 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEG  135 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGT
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhc
Confidence            355677788899999999999999999999999998533  47999999999999999999998875 899999998764


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -...++||.|++..+...+|      ..+.+.||+||++++.
T Consensus       136 ~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  136 WPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             TGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred             cccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEE
Confidence            33457899999998876554      3577789999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=7.5e-13  Score=116.17  Aligned_cols=143  Identities=19%  Similarity=0.194  Sum_probs=107.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+....+..+..+|||||+|+|.++..+++ +|+.+++.+|. |..++.+++       .++|+++.+|+. -++|.  
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~--  158 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV--  158 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS--
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc--
Confidence            4556667777788999999999999999987 68899999999 888888887       468999999998 46665  


Q ss_pred             cceEEecccccccCC--HHHHHHHHHhccCCC--CEEEEEEeeeCcccccCchH----HHHHHhhhhcCCCCCCCCCHHH
Q 018194          191 FDGAYSIEATCHAPK--LEDVYAEVFRVLKPG--SLYVSYEWVTTDKYEAENKE----HVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       191 fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkpg--G~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                      +|+|+..+++|++++  -..+|+++++.|+||  |+|++.|....+.-......    ...+......+   ...++.++
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~---G~~rt~~e  235 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG---GKERTEEE  235 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS---SS-EEHHH
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC---CCCcCHHH
Confidence            999999999999985  568999999999999  99999998875543332222    22222222222   24568889


Q ss_pred             HHHHHH
Q 018194          263 ITEIAK  268 (359)
Q Consensus       263 ~~~~l~  268 (359)
                      +.++|+
T Consensus       236 ~~~ll~  241 (241)
T PF00891_consen  236 WEALLK  241 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            988874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.47  E-value=6.1e-13  Score=110.84  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=101.7

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ...+.||+|+|.|+.+..+....-.+|..+|+.+..++.|++..... .....++.+..++++..+.++||+|++.+++.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            34699999999999998876533459999999999999999876542 12345788888887765567999999999999


Q ss_pred             ccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          202 HAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       202 ~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                      |+.|  ...+|+++...|+|+|.+++=|.........            .......-.++.+.+.+++++||++++..+.
T Consensus       134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~------------~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~  201 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE------------FDEEDSSVTRSDEHFRELFKQAGLRLVKEEK  201 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE------------EETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc------------cCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence            9984  7799999999999999999977655432211            1111111235678999999999999999876


Q ss_pred             c
Q 018194          280 L  280 (359)
Q Consensus       280 ~  280 (359)
                      -
T Consensus       202 Q  202 (218)
T PF05891_consen  202 Q  202 (218)
T ss_dssp             -
T ss_pred             c
Confidence            5

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.47  E-value=1.7e-13  Score=113.13  Aligned_cols=151  Identities=16%  Similarity=0.222  Sum_probs=109.2

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~  202 (359)
                      ...++|||||.|.+.+.+....-.+++-+|.|-.|++.++..-. .+  -.+....+|-+.++|.++++|+|++..++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            34799999999999999877533489999999999998875421 22  2467889999999999999999999999999


Q ss_pred             cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC---CCCCHHHHHHHHHhCCCeEEEEE
Q 018194          203 APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP---GLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       203 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      ..|.+..+.++...|||+|.++-.-+.....|......  .+...-..+.-.|   ++....++-.+|..|||..+.+.
T Consensus       150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl--qLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD  226 (325)
T KOG2940|consen  150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL--QLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD  226 (325)
T ss_pred             hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh--hHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence            99999999999999999999986422222111111110  0111111222222   34455788899999999987654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.47  E-value=9.1e-13  Score=112.50  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=77.5

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FEDN  189 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  189 (359)
                      ++++.+|||||||+|.++..+++..  ..+|+++|+++ |.          .. +++.++++|+.+.+        +.++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PI-VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            4678899999999999999998863  36999999998 21          12 35899999998853        5678


Q ss_pred             ccceEEecccccccCCH-----------HHHHHHHHhccCCCCEEEEEEe
Q 018194          190 HFDGAYSIEATCHAPKL-----------EDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +||+|++..+.++..++           ..+|+++.++|||||.+++..+
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99999998766554321           4689999999999999998543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=5.7e-13  Score=120.24  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=90.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .....+++.+.++++.+|||+|||+|.++..+++..+  ..|+++|+++.+++.|+++....+. +++.++++|+.+...
T Consensus        67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~  145 (322)
T PRK13943         67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP  145 (322)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc
Confidence            3455667777888899999999999999999998543  4799999999999999999988886 479999999877654


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..++||+|++...+.+++      ..+.+.|+|||++++.
T Consensus       146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence            457899999986655443      3567899999998874

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.47  E-value=5.8e-13  Score=109.45  Aligned_cols=113  Identities=24%  Similarity=0.377  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHhcCCCC--CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 018194          107 TRLHEEMAVDLIDVKA--GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-  183 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-  183 (359)
                      +..+....++++.+++  ..-|||||||+|..+..+.. .|...+|+|+|+.|++.|.++--+      -.++.+|+-. 
T Consensus        33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~G  105 (270)
T KOG1541|consen   33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEG  105 (270)
T ss_pred             hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCC
Confidence            4445555566666655  67899999999999888877 467999999999999999874221      2577778754 


Q ss_pred             CCCCCCccceEEecccccccC-------C----HHHHHHHHHhccCCCCEEEEE
Q 018194          184 MPFEDNHFDGAYSIEATCHAP-------K----LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~~l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||..++||.+++..++.++-       +    +..++..++.+|++|++.++.
T Consensus       106 lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            789999999999988776652       1    346788899999999999874

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.46  E-value=6.4e-13  Score=113.22  Aligned_cols=148  Identities=15%  Similarity=0.119  Sum_probs=99.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ...++||||+|.|..+..++... .+|++.|.|+.|..+.+++    |    .+  ..|..++.-.+.+||+|.|.++|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k----g----~~--vl~~~~w~~~~~~fDvIscLNvLD  162 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK----G----FT--VLDIDDWQQTDFKFDVISCLNVLD  162 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC----C----Ce--EEehhhhhccCCceEEEeehhhhh
Confidence            35689999999999999999865 4899999999998776654    2    22  223333433356899999999999


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ...+|..+|+++++.|+|+|++++.-..+-..|.+... ....-...+.. .+..--.....+.+.|+.+||+++.....
T Consensus       163 Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~-~g~~~E~~v~~l~~v~~p~GF~v~~~tr~  241 (265)
T PF05219_consen  163 RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV-KGATFEEQVSSLVNVFEPAGFEVERWTRL  241 (265)
T ss_pred             ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC-CCCcHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            99999999999999999999999865444333322211 00000000000 00000001234458999999999988765


Q ss_pred             C
Q 018194          281 A  281 (359)
Q Consensus       281 ~  281 (359)
                      .
T Consensus       242 P  242 (265)
T PF05219_consen  242 P  242 (265)
T ss_pred             C
Confidence            3

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.45  E-value=3.8e-12  Score=122.51  Aligned_cols=131  Identities=20%  Similarity=0.234  Sum_probs=98.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc-
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA-  199 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~-  199 (359)
                      ++.+|||+|||+|.++..++.. ++++|+++|+|+.+++.|++++...++.++++++++|+.+ .++.++||+|+++-. 
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence            3568999999999999998874 6789999999999999999999888877789999999865 234568999998531 


Q ss_pred             -------------ccccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC
Q 018194          200 -------------TCHAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL  254 (359)
Q Consensus       200 -------------l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (359)
                                   ..|-|            ....+++++.++|+|||.+++. ..                         
T Consensus       217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig-------------------------  270 (506)
T PRK01544        217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IG-------------------------  270 (506)
T ss_pred             CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-EC-------------------------
Confidence                         11111            1345678888999999999862 11                         


Q ss_pred             CCCCCHHHHHHHHHhCCCeEEEE-EecC
Q 018194          255 PGLRSYAEITEIAKRVGFEVVKE-KDLA  281 (359)
Q Consensus       255 ~~~~~~~~~~~~l~~aGF~~i~~-~~~~  281 (359)
                        ....+.+.+++++.||..+.. .++.
T Consensus       271 --~~q~~~v~~~~~~~g~~~~~~~~D~~  296 (506)
T PRK01544        271 --FKQEEAVTQIFLDHGYNIESVYKDLQ  296 (506)
T ss_pred             --CchHHHHHHHHHhcCCCceEEEecCC
Confidence              112357788888899986653 3443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.44  E-value=6.1e-12  Score=104.45  Aligned_cols=166  Identities=21%  Similarity=0.335  Sum_probs=120.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----  186 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  186 (359)
                      +.+.+.++. .+.+|||||||||..+.++++. +..+..-.|+++..+...+......+++.-..-+..|+...+.    
T Consensus        16 ~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~   94 (204)
T PF06080_consen   16 EVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL   94 (204)
T ss_pred             HHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence            334444432 2336999999999999999984 7788889999999988888777777765444556677766432    


Q ss_pred             ----CCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCc-ccc-cCchHHHHHHhhhhcCCCCCCCC
Q 018194          187 ----EDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTD-KYE-AENKEHVDIIQGIERGDALPGLR  258 (359)
Q Consensus       187 ----~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~  258 (359)
                          ..++||+|++.+++|.++  ..+.+++.+.++|+|||.|+++.....+ .+. +.+..+...+   ...+....++
T Consensus        95 ~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sL---r~rdp~~GiR  171 (204)
T PF06080_consen   95 PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASL---RSRDPEWGIR  171 (204)
T ss_pred             ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHH---hcCCCCcCcc
Confidence                245899999999999876  4678999999999999999998644422 222 2222333333   3333344677


Q ss_pred             CHHHHHHHHHhCCCeEEEEEecC
Q 018194          259 SYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       259 ~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      +.+++.++.+++|++.++..++.
T Consensus       172 D~e~v~~lA~~~GL~l~~~~~MP  194 (204)
T PF06080_consen  172 DIEDVEALAAAHGLELEEDIDMP  194 (204)
T ss_pred             CHHHHHHHHHHCCCccCcccccC
Confidence            88999999999999988776663

The function of this family is unknown.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=2.7e-12  Score=121.85  Aligned_cols=116  Identities=17%  Similarity=0.276  Sum_probs=94.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      ...+...+...+|.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++...|+. +++++++|+.+++   
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~  319 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK  319 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc
Confidence            3445566778889999999999999999998853  369999999999999999999999875 6999999998765   


Q ss_pred             -CCCCccceEEec------ccccccCC----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          186 -FEDNHFDGAYSI------EATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 -~~~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       +..++||.|++.      .++.+-++                ..++|.++.++|||||+++..+
T Consensus       320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             345789999974      23333333                3578999999999999998754

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.44  E-value=1e-11  Score=105.97  Aligned_cols=140  Identities=15%  Similarity=0.096  Sum_probs=104.3

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCCCCC
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK-----------AGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~  186 (359)
                      +...++.+||+.|||.|..+..|++. |.+|+|+|+|+..++.+.+....           .--..++++.++|+.+++.
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence            34446789999999999999999996 78999999999999987653210           0012469999999999863


Q ss_pred             C---CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194          187 E---DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA  261 (359)
Q Consensus       187 ~---~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (359)
                      .   .+.||+|+-..++++++  ...+..+.+.++|+|||.+++..+....                 ...+.|...+.+
T Consensus       118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----------------~~~GPPf~v~~~  180 (226)
T PRK13256        118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----------------KSQTPPYSVTQA  180 (226)
T ss_pred             cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----------------CCCCCCCcCCHH
Confidence            2   26899999999999997  3778999999999999999887542211                 012233445678


Q ss_pred             HHHHHHHhCCCeEEE
Q 018194          262 EITEIAKRVGFEVVK  276 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~  276 (359)
                      ++.+++.. +|++..
T Consensus       181 e~~~lf~~-~~~i~~  194 (226)
T PRK13256        181 ELIKNFSA-KIKFEL  194 (226)
T ss_pred             HHHHhccC-CceEEE
Confidence            88888864 344443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.42  E-value=2.2e-12  Score=122.27  Aligned_cols=120  Identities=21%  Similarity=0.266  Sum_probs=94.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--C
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF--E  187 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~  187 (359)
                      ...+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+..++.+..+|....+.  +
T Consensus       227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~  306 (426)
T TIGR00563       227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE  306 (426)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence            3456667788899999999999999999998853 479999999999999999999998876444557777765443  4


Q ss_pred             CCccceEEec------ccccccCC----------------HHHHHHHHHhccCCCCEEEEEEeee
Q 018194          188 DNHFDGAYSI------EATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       188 ~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      .++||.|++.      .++.+.|+                ...+|.++.++|||||+++..+.+.
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            5789999863      34444444                3679999999999999999876444

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PHA03411 putative methyltransferase; Provisional

Probab=99.42  E-value=4.4e-12  Score=110.21  Aligned_cols=128  Identities=14%  Similarity=0.159  Sum_probs=96.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..+.+|||+|||+|.++..++.. .+.+|+++|+|+.+++.++++.      ++++++++|+.+... ..+||+|+++-.
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-~~kFDlIIsNPP  135 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-NEKFDVVISNPP  135 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence            34569999999999999888775 3579999999999999998763      258999999988653 468999999888


Q ss_pred             ccccCC--------------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCC
Q 018194          200 TCHAPK--------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS  259 (359)
Q Consensus       200 l~~~~~--------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (359)
                      +.+.+.                    ...++.....+|+|+|.+.+. +...+.|                    ..-.+
T Consensus       136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y--------------------~~sl~  194 (279)
T PHA03411        136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYY--------------------DGTMK  194 (279)
T ss_pred             ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eeccccc--------------------cccCC
Confidence            877531                    245667778899999977664 1111111                    12346


Q ss_pred             HHHHHHHHHhCCCeEEE
Q 018194          260 YAEITEIAKRVGFEVVK  276 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i~  276 (359)
                      +++++++|+++||....
T Consensus       195 ~~~y~~~l~~~g~~~~~  211 (279)
T PHA03411        195 SNKYLKWSKQTGLVTYA  211 (279)
T ss_pred             HHHHHHHHHhcCcEecC
Confidence            78999999999998643

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.41  E-value=9.6e-12  Score=117.88  Aligned_cols=115  Identities=23%  Similarity=0.417  Sum_probs=90.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  188 (359)
                      ..+...+++.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...++.  ++++++|+.+.+  ++.
T Consensus       234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~  311 (427)
T PRK10901        234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDG  311 (427)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhccc
Confidence            445566778899999999999999999998863 369999999999999999999988764  689999998754  345


Q ss_pred             CccceEEeccc------ccccCC----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEA------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ++||.|++.-.      +.+-++                ..++|..+.++|||||++++...
T Consensus       312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            78999995332      111111                24789999999999999998653

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=6.4e-12  Score=119.71  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=90.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .....+...++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.+++++...|+. +++++++|+.+.+ ++++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~  318 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQ  318 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCC
Confidence            34456677789999999999999998888742  469999999999999999999998875 7999999998765 4578


Q ss_pred             cceEEecc------cccccC----------------CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          191 FDGAYSIE------ATCHAP----------------KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       191 fD~v~~~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ||+|++.-      .+..-|                ....+|.++.++|||||+++..+.
T Consensus       319 fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        319 PDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             CCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99999631      111111                124689999999999999998653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.39  E-value=5.1e-12  Score=94.96  Aligned_cols=101  Identities=33%  Similarity=0.461  Sum_probs=85.4

Q ss_pred             EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecccccc-
Q 018194          125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIEATCH-  202 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~-  202 (359)
                      +|+|+|||+|..+..+++....+++++|+++.+++.+++..... ...++.+...|+.+... ..++||+|++..++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            58999999999999998855679999999999999988543332 34578999999988653 4578999999999988 


Q ss_pred             cCCHHHHHHHHHhccCCCCEEEEE
Q 018194          203 APKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       203 ~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..+...+++.+.+.|+|||.+++.
T Consensus        80 ~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            678899999999999999999874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.38  E-value=5.4e-12  Score=107.94  Aligned_cols=145  Identities=26%  Similarity=0.397  Sum_probs=105.2

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCCeEEEEcCCCCCCC
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK-AG----------LDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~----------~~~~i~~~~~d~~~~~~  186 (359)
                      +...++.+||..|||.|.-...|++. |.+|+|+|+|+..++.+.+.... ..          -..+|++.++|+.+++.
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            56677889999999999999999996 78999999999999998543321 00          12368999999999764


Q ss_pred             CC-CccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          187 ED-NHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       187 ~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      .. ++||+|+=..+++-++  ...+..+.+.++|+|||.+++........                ...+.|...+.+++
T Consensus       112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----------------~~~GPPf~v~~~ev  175 (218)
T PF05724_consen  112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----------------EMEGPPFSVTEEEV  175 (218)
T ss_dssp             SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----------------CSSSSS----HHHH
T ss_pred             hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----------------CCCCcCCCCCHHHH
Confidence            33 5799999999998886  57899999999999999965543322110                01234445577899


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .+++. .+|++...+..
T Consensus       176 ~~l~~-~~f~i~~l~~~  191 (218)
T PF05724_consen  176 RELFG-PGFEIEELEEE  191 (218)
T ss_dssp             HHHHT-TTEEEEEEEEE
T ss_pred             HHHhc-CCcEEEEEecc
Confidence            99998 88999887664

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.38  E-value=3.2e-11  Score=105.93  Aligned_cols=137  Identities=22%  Similarity=0.185  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194          108 RLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       108 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      +.+.+.++..+. ..++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...+    ++++++|+.+..
T Consensus        71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l  146 (251)
T TIGR03704        71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL  146 (251)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc
Confidence            444444444443 223468999999999999999874 56799999999999999999987654    478999987632


Q ss_pred             C--CCCccceEEeccccc--------------ccC--------C----HHHHHHHHHhccCCCCEEEEEEeeeCcccccC
Q 018194          186 F--EDNHFDGAYSIEATC--------------HAP--------K----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE  237 (359)
Q Consensus       186 ~--~~~~fD~v~~~~~l~--------------~~~--------~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  237 (359)
                      .  ..++||+|+++--..              |-+        |    ...++..+.++|||||++++.. ..       
T Consensus       147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~-------  218 (251)
T TIGR03704       147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SE-------  218 (251)
T ss_pred             chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-Cc-------
Confidence            1  135799999875321              100        1    2467778889999999998731 10       


Q ss_pred             chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                                          ....++.++|++.||...-
T Consensus       219 --------------------~~~~~v~~~l~~~g~~~~~  237 (251)
T TIGR03704       219 --------------------RQAPLAVEAFARAGLIARV  237 (251)
T ss_pred             --------------------chHHHHHHHHHHCCCCcee
Confidence                                1234677888899987643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=7.6e-12  Score=118.24  Aligned_cols=117  Identities=17%  Similarity=0.334  Sum_probs=93.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  188 (359)
                      ..+...+.+.+|.+|||+|||+|..+..++...  +.+|+++|+|+.+++.+++++++.|+. ++++.++|+..++ +..
T Consensus       227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~  305 (431)
T PRK14903        227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQ  305 (431)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhh
Confidence            344556678899999999999999999998853  579999999999999999999998875 6899999998765 445


Q ss_pred             CccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEee
Q 018194          189 NHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       189 ~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ++||.|++..      .+..-|+                ..++|.++.+.|||||.++....+
T Consensus       306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            7899998632      1111121                256799999999999998876543

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=1.6e-11  Score=117.04  Aligned_cols=113  Identities=25%  Similarity=0.330  Sum_probs=90.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FE  187 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  187 (359)
                      ..+...+.+.++.+|||+|||+|..+..+++.  ++.+|+++|+++.+++.+++++...|+. +++++++|+.+++  ++
T Consensus       240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~  318 (444)
T PRK14902        240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA  318 (444)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc
Confidence            34555677788999999999999999999985  3579999999999999999999998875 5999999998753  33


Q ss_pred             CCccceEEeccc------ccccCC----------------HHHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEA------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                       ++||+|++...      +.+-|+                ...+|+++.++|||||.++..
T Consensus       319 -~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        319 -EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             -ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             68999997532      111111                246899999999999999864

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=3.4e-11  Score=107.09  Aligned_cols=123  Identities=28%  Similarity=0.423  Sum_probs=93.6

Q ss_pred             EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc--
Q 018194          125 RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC--  201 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~--  201 (359)
                      +|||+|||+|..+..++.. +.++|+++|+|+..++.|++++...++ .++.++++|..+ +.. ++||+|+++--.-  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~  189 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPA  189 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-ccC-CceeEEEeCCCCCCC
Confidence            8999999999999999985 457999999999999999999999988 667777778765 223 4899999874211  


Q ss_pred             -----------ccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCC
Q 018194          202 -----------HAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR  258 (359)
Q Consensus       202 -----------~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (359)
                                 |-|            -...++.++.+.|+|||.+++-.                            ...
T Consensus       190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~----------------------------g~~  241 (280)
T COG2890         190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI----------------------------GLT  241 (280)
T ss_pred             cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE----------------------------CCC
Confidence                       100            12467888889999999888731                            111


Q ss_pred             CHHHHHHHHHhCC-CeEEEEE
Q 018194          259 SYAEITEIAKRVG-FEVVKEK  278 (359)
Q Consensus       259 ~~~~~~~~l~~aG-F~~i~~~  278 (359)
                      ..+.+.+++++.| |..+...
T Consensus       242 q~~~v~~~~~~~~~~~~v~~~  262 (280)
T COG2890         242 QGEAVKALFEDTGFFEIVETL  262 (280)
T ss_pred             cHHHHHHHHHhcCCceEEEEE
Confidence            3468899999999 6655443

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.36  E-value=7.9e-11  Score=101.71  Aligned_cols=153  Identities=19%  Similarity=0.255  Sum_probs=116.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHh-hcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C--CCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA-HSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-F--EDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~fD~v  194 (359)
                      ....+||||.||.|........ .+.  .+|...|.|+..++..++.+++.|+.+-++|.++|+.+.. +  -+-..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            4567999999999997776655 443  6999999999999999999999999877799999998842 1  13457999


Q ss_pred             EecccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC-CCCCCCHHHHHHHHHhC
Q 018194          195 YSIEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA-LPGLRSYAEITEIAKRV  270 (359)
Q Consensus       195 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~a  270 (359)
                      +++..++.++|   ....+..+.+.+.|||+++..    ..++.+........+.....+.. ....++..++.++.+.|
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT----gQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a  289 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT----GQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA  289 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc----CCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence            99999999987   456899999999999999973    33344444333333333222111 22467899999999999


Q ss_pred             CCeEEEE
Q 018194          271 GFEVVKE  277 (359)
Q Consensus       271 GF~~i~~  277 (359)
                      ||+-+..
T Consensus       290 GF~K~~q  296 (311)
T PF12147_consen  290 GFEKIDQ  296 (311)
T ss_pred             CCchhhh
Confidence            9996543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.7e-11  Score=107.16  Aligned_cols=114  Identities=25%  Similarity=0.373  Sum_probs=93.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      -+.+++.++...+.+|||+|||.|.++..+++. +..+++.+|+|...++.++++...+++.. ..+...|..+ +..+ 
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~-~v~~-  223 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE-PVEG-  223 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc-cccc-
Confidence            366777887777779999999999999999985 67899999999999999999999887653 3677777765 3333 


Q ss_pred             ccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +||+|+|+--+|--.+     -.+++++..+.|++||.+.++-
T Consensus       224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa  266 (300)
T COG2813         224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA  266 (300)
T ss_pred             cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence            9999999988875332     2389999999999999998863

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.35  E-value=4.3e-12  Score=115.02  Aligned_cols=107  Identities=25%  Similarity=0.365  Sum_probs=78.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCCC----CCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG---------LDSLCEVVCGNFLKMP----FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~~----~~~  188 (359)
                      ++.+|||+|||-|+-+.-+....-..++|+|+++..++.|++|.....         ..-...|+.+|.....    +++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            788999999998886666655433699999999999999999983211         1124678888887532    333


Q ss_pred             --CccceEEecccccccC----CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 --NHFDGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 --~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                        ..||+|-|.+++||.=    ....+|+++.+.|+|||+++.+.+
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence              5999999999999963    356799999999999999998643

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.35  E-value=9.1e-12  Score=110.01  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEec
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYSI  197 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~  197 (359)
                      ..++.+|||||||+|.++..+++. ++.+++++|+++.+++.|++.+...+..++++++.+|+.+. ....++||+|++.
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            345679999999999999999874 67899999999999999999876544456899999998653 2223689999975


Q ss_pred             ccc-cccC---CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          198 EAT-CHAP---KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       198 ~~l-~~~~---~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ..- ...+   ....+++++.+.|+|||++++..+
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~  178 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW  178 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence            311 1122   236999999999999999998533

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.35  E-value=1.3e-11  Score=109.44  Aligned_cols=112  Identities=17%  Similarity=0.190  Sum_probs=89.1

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      ...+.+.++.+|||+|||+|..+..+++..  ...|+++|+++.+++.++++++..++. ++.++..|+..++...+.||
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD  142 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFD  142 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCC
Confidence            345677889999999999999999998753  359999999999999999999998874 69999999877654456799


Q ss_pred             eEEecc------cccccC----------------CHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIE------ATCHAP----------------KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~------~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .|++.-      ++.+-|                ...++|+++.++|||||+++...
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            998642      111111                12469999999999999998654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.35  E-value=8.9e-12  Score=108.26  Aligned_cols=108  Identities=18%  Similarity=0.240  Sum_probs=88.3

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCC
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-----FED  188 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~  188 (359)
                      ++...++.+|||+|||+|..+..++..  .+.+|+++|+++++++.|+++++..++.++++++.+|+.+. +     .+.
T Consensus        63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~  142 (234)
T PLN02781         63 LVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK  142 (234)
T ss_pred             HHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence            334456789999999999988888874  35799999999999999999999999988999999999763 1     124


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++||+|++...   -+....++..+.++|+|||.+++-.
T Consensus       143 ~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        143 PEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             CCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            68999988542   1356688999999999999988743

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.34  E-value=2e-11  Score=101.01  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=83.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++...   ..+++++++|+.++++++..|
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCC
Confidence            45667778888899999999999999999987 67999999999999999988754   247999999999988777779


Q ss_pred             ceEEecccccccCCHHHHHHHHHhc--cCCCCEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRV--LKPGSLYVS  225 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~  225 (359)
                      |.|+++...+ +  ....+..+.+.  +.++|.+++
T Consensus        79 d~vi~n~Py~-~--~~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       79 YKVVGNLPYN-I--STPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             CEEEECCCcc-c--HHHHHHHHHhcCCCcceEEEEE
Confidence            9999875443 2  23444444432  346777765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.33  E-value=2.5e-11  Score=121.57  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=104.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCccceEEeccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP-FEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~fD~v~~~~~  199 (359)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++. .+++++++|+.+.. -..++||+|++.--
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            47899999999999999999863347999999999999999999998886 58999999987631 11468999998532


Q ss_pred             c-----------cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          200 T-----------CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       200 l-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      -           ....+...++..+.++|+|||.+++.....                         .+   ..-.+.++
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-------------------------~~---~~~~~~~~  669 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-------------------------GF---KMDEEGLA  669 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-------------------------cC---ChhHHHHH
Confidence            1           112345678899999999999987742100                         00   11267788


Q ss_pred             hCCCeEEEEEecCCCCCCch
Q 018194          269 RVGFEVVKEKDLAKPPAQPW  288 (359)
Q Consensus       269 ~aGF~~i~~~~~~~~~~~~w  288 (359)
                      ++|+.+......+.++-.|+
T Consensus       670 ~~g~~~~~i~~~~~~~Dhp~  689 (702)
T PRK11783        670 KLGLKAEEITAKTLPPDFAR  689 (702)
T ss_pred             hCCCeEEEEecCCCCCCCCC
Confidence            99999988877665554443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.31  E-value=6.8e-11  Score=112.72  Aligned_cols=132  Identities=26%  Similarity=0.353  Sum_probs=98.0

Q ss_pred             CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194           89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      +-.+.+++...........+.+.+.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...
T Consensus       264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~  342 (443)
T PRK13168        264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRN  342 (443)
T ss_pred             CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3344444443323334455667777888888888899999999999999999986 479999999999999999999888


Q ss_pred             CCCCCeEEEEcCCCCC----CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          169 GLDSLCEVVCGNFLKM----PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       169 ~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++. +++++++|+.+.    ++.+++||+|++.-.-.   .....++.+.+ ++|++.+++.
T Consensus       343 ~~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        343 GLD-NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CCC-ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEE
Confidence            764 699999998652    24456899998854321   23455665555 6898888874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.31  E-value=2.5e-11  Score=102.34  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=74.8

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------F  186 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~  186 (359)
                      ...+.++.+|||+|||+|.++..+++.  ...+|+++|+|+.+           .. .+++++++|+.+.+        +
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~   94 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV   94 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence            445678999999999999999988874  34589999999865           11 35789999987643        3


Q ss_pred             CCCccceEEeccccc--------cc---CCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATC--------HA---PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.++||+|++..+.+        |.   .+...+++++.++|+|||++++.
T Consensus        95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            567899999865321        11   12368999999999999999984

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.30  E-value=2.8e-11  Score=105.14  Aligned_cols=152  Identities=24%  Similarity=0.276  Sum_probs=102.8

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA  146 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~  146 (359)
                      ....+.|+.||+...+.=......+-.+       .++... .++..++-..-.+++..++|+|||-|+-+.-+-+..-.
T Consensus        70 ~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii-------~lRnfN-NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~  141 (389)
T KOG1975|consen   70 ESKSSEVAEHYNERTEVGREKRQRSPII-------FLRNFN-NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG  141 (389)
T ss_pred             cchhHHHHHHHHHHHHHhHhhhccCcee-------ehhhhh-HHHHHHHHHHHhccccccceeccCCcccHhHhhhhccc
Confidence            3447789999998765432222111111       122222 22222222223457889999999999877666554335


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCC------CCCCCccceEEeccccccc-C---CHHHHHH
Q 018194          147 NVVGITINEYQVNRARLHNKKAGLD-----SLCEVVCGNFLKM------PFEDNHFDGAYSIEATCHA-P---KLEDVYA  211 (359)
Q Consensus       147 ~v~g~D~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~------~~~~~~fD~v~~~~~l~~~-~---~~~~~l~  211 (359)
                      +++|+||++..++.|+++.....-.     -.+.|+.+|....      ++++.+||+|-|.+++|+. .   ....+|+
T Consensus       142 ~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~  221 (389)
T KOG1975|consen  142 EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALR  221 (389)
T ss_pred             ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHH
Confidence            9999999999999999987643211     1368889998752      3455569999999999985 2   4668999


Q ss_pred             HHHhccCCCCEEEEE
Q 018194          212 EVFRVLKPGSLYVSY  226 (359)
Q Consensus       212 ~~~~~LkpgG~l~~~  226 (359)
                      ++.++|||||+++-.
T Consensus       222 Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  222 NVAKCLKPGGVFIGT  236 (389)
T ss_pred             HHHhhcCCCcEEEEe
Confidence            999999999999864

>PRK00811 spermidine synthase; Provisional

Probab=99.30  E-value=2.4e-11  Score=108.71  Aligned_cols=105  Identities=25%  Similarity=0.371  Sum_probs=83.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG--L--DSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      +.+.+||+||||+|..++.++++++ .+|+++|+++.+++.|++.+...+  .  .++++++.+|+... ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3567999999999999999988744 599999999999999999876532  1  46899999998763 2345789999


Q ss_pred             EecccccccCC----HHHHHHHHHhccCCCCEEEE
Q 018194          195 YSIEATCHAPK----LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       195 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++...-.+.+.    ..++++.+.+.|+|||.+++
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~  189 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA  189 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            98654332222    36789999999999999886

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.29  E-value=3.3e-11  Score=99.46  Aligned_cols=125  Identities=20%  Similarity=0.303  Sum_probs=82.6

Q ss_pred             HHHHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      +.+++.+.. +++..|-|+|||.+.++..+..  +.+|+.+|+-+.                |-.+..+|+...|+++++
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~s  122 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP----------------NPRVTACDIANVPLEDES  122 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------------STTEEES-TTS-S--TT-
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC----------------CCCEEEecCccCcCCCCc
Confidence            445555543 3457999999999999866543  358999998531                235788999999999999


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      .|+++++.+|.. .|+..++.|+.|+|||||.+.|.|....                         +.+.+.+.+.++..
T Consensus       123 vDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR-------------------------f~~~~~F~~~~~~~  176 (219)
T PF05148_consen  123 VDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR-------------------------FENVKQFIKALKKL  176 (219)
T ss_dssp             EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG--------------------------S-HHHHHHHHHCT
T ss_pred             eeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc-------------------------CcCHHHHHHHHHHC
Confidence            999999888765 4899999999999999999999875432                         22557888999999


Q ss_pred             CCeEEEEEec
Q 018194          271 GFEVVKEKDL  280 (359)
Q Consensus       271 GF~~i~~~~~  280 (359)
                      ||+......-
T Consensus       177 GF~~~~~d~~  186 (219)
T PF05148_consen  177 GFKLKSKDES  186 (219)
T ss_dssp             TEEEEEEE--
T ss_pred             CCeEEecccC
Confidence            9999886543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK03612 spermidine synthase; Provisional

Probab=99.28  E-value=3.2e-11  Score=116.74  Aligned_cols=106  Identities=21%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLH--NKKA---GL-DSLCEVVCGNFLKM-PFEDNHFD  192 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~-~~~~~~fD  192 (359)
                      +++.+|||||||+|..++.+++++. .+|+++|+++++++.++++  ....   .. .++++++.+|+.+. ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4567999999999999999998765 6999999999999999983  2221   11 35799999998873 22347899


Q ss_pred             eEEecccccccCC-----HHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|++...-...+.     ..++++.+++.|||||.+++.
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~  414 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ  414 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence            9999754333222     246899999999999999874

>PRK01581 speE spermidine synthase; Validated

Probab=99.25  E-value=8e-11  Score=106.31  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=97.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHH--H---HcC-CCCCeEEEEcCCCCC-CCCCCccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHN--K---KAG-LDSLCEVVCGNFLKM-PFEDNHFD  192 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~-~~~~~~fD  192 (359)
                      ..+.+||+||||+|..++.+.+++ ..+|+++|+++.+++.|++..  .   ... -.++++++.+|+.+. ....++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            345699999999999999998864 369999999999999999621  1   111 146899999999873 33456899


Q ss_pred             eEEecccccc---cC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          193 GAYSIEATCH---AP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       193 ~v~~~~~l~~---~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      +|++...-..   ..  --.++++.+++.|+|||.+++..-  .+      ......               ...+.+.|
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp------~~~~~~---------------~~~i~~tL  285 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN--SP------ADAPLV---------------YWSIGNTI  285 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC--Ch------hhhHHH---------------HHHHHHHH
Confidence            9998742110   11  125789999999999999887411  00      000000               12367889


Q ss_pred             HhCCCeEEEEEecCC
Q 018194          268 KRVGFEVVKEKDLAK  282 (359)
Q Consensus       268 ~~aGF~~i~~~~~~~  282 (359)
                      +++||.+.....+..
T Consensus       286 ~~af~~v~~y~t~vP  300 (374)
T PRK01581        286 EHAGLTVKSYHTIVP  300 (374)
T ss_pred             HHhCCceEEEEEecC
Confidence            999999887776633

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.23  E-value=1.8e-10  Score=107.29  Aligned_cols=105  Identities=19%  Similarity=0.280  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP--F--EDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~fD~v~~  196 (359)
                      ++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+..  +  ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            57899999999999988766543359999999999999999999998885 47999999997742  1  2468999998


Q ss_pred             ccccccc---------CCHHHHHHHHHhccCCCCEEEEE
Q 018194          197 IEATCHA---------PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       197 ~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .-....-         .+...++..+.++|+|||.++.+
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            7432111         12445666788999999999875

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.23  E-value=6.8e-11  Score=99.88  Aligned_cols=116  Identities=22%  Similarity=0.305  Sum_probs=94.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC--C
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMP--F  186 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~--~  186 (359)
                      ..+..++...++.+|||||++.|..+..||.. + +.+++.+|+++++.+.|++++++.|+.++|..+. +|+.+.-  .
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            34444445567889999999999999999984 3 5799999999999999999999999998899999 5776632  3


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      ..++||+|+.-..   -.+...++..+.++|+|||.+++-....
T Consensus       129 ~~~~fDliFIDad---K~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         129 LDGSFDLVFIDAD---KADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             cCCCccEEEEeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            4689999998653   2367899999999999999999854433

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.23  E-value=6.7e-11  Score=99.63  Aligned_cols=101  Identities=27%  Similarity=0.374  Sum_probs=81.5

Q ss_pred             EEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEecccc
Q 018194          125 RILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P--FEDNHFDGAYSIEAT  200 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~v~~~~~l  200 (359)
                      .+||||||.|.++..+|. +++..++|+|++...+..+.+++...+++ |+.++++|+... +  ++++++|.|+.++.=
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            899999999999999998 58899999999999999999999998874 899999999873 2  567899999987754


Q ss_pred             cccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -|...        ...++..+.++|+|||.|.+.
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence            43321        258999999999999999874

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.23  E-value=3.5e-10  Score=103.05  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ...+.+.+.+.+++...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++ .+++|+++|+.++
T Consensus       156 ~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~  233 (315)
T PRK03522        156 AVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQF  233 (315)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHH
Confidence            344455555556655445689999999999999999985 57999999999999999999998887 5799999999875


Q ss_pred             CC-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          185 PF-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .. ..+.||+|++.-.-.   .....+.+....++|++.+++.
T Consensus       234 ~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        234 ATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             HHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEE
Confidence            32 235799999874311   1122232333446787777663

>PLN02476 O-methyltransferase

Probab=99.20  E-value=2.2e-10  Score=100.75  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=88.9

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CC
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F----ED  188 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~----~~  188 (359)
                      ++...++.+|||||+++|..+..++..  .+.+|+.+|.+++..+.|++.+++.|+.++|+++.+|+.+. + +    ..
T Consensus       113 L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~  192 (278)
T PLN02476        113 LVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG  192 (278)
T ss_pred             HHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence            334455789999999999999999874  35689999999999999999999999998999999999763 2 1    13


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++||+|+....   -.+....+..+.++|+|||.+++-
T Consensus       193 ~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        193 SSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            68999998653   235678899999999999998874

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.19  E-value=7e-10  Score=105.65  Aligned_cols=117  Identities=19%  Similarity=0.296  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      ....+.+.+.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++++.+|+.+
T Consensus       274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~  351 (431)
T TIGR00479       274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLET  351 (431)
T ss_pred             HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHH
Confidence            4445556666777777778889999999999999999986 46999999999999999999988876 489999999875


Q ss_pred             C----CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          184 M----PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       184 ~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .    ++.+++||+|++.-.=.  .-...+++.+.+ ++|++.+++
T Consensus       352 ~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       352 VLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             HHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEE
Confidence            2    23346799998754311  113566666554 889887766

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02366 spermidine synthase

Probab=99.19  E-value=2.2e-10  Score=102.99  Aligned_cols=105  Identities=20%  Similarity=0.325  Sum_probs=83.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC--CCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG--L-DSLCEVVCGNFLKMP--FEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~--~~~~~fD~v  194 (359)
                      +.+.+||+||||.|..++.++++++ .+|+.+|+++.+++.+++.+...+  + .++++++.+|+...-  .+.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4568999999999999999999765 589999999999999999876532  2 358999999975531  235689999


Q ss_pred             EecccccccCC----HHHHHHHHHhccCCCCEEEE
Q 018194          195 YSIEATCHAPK----LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       195 ~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++...-.+.+.    ...+++.+++.|+|||.++.
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~  204 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT  204 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence            98654332221    35789999999999999976

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.18  E-value=5.1e-10  Score=93.64  Aligned_cols=148  Identities=18%  Similarity=0.259  Sum_probs=95.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC------------------------------
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG------------------------------  169 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~------------------------------  169 (359)
                      ..+..+|||||..|.++..+++..+ ..|.|+||++..++.|+++++..-                              
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            3567899999999999999999655 489999999999999998864321                              


Q ss_pred             ----CCCCeE-------EEEcCCCCCCCCCCccceEEecccccccC------CHHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194          170 ----LDSLCE-------VVCGNFLKMPFEDNHFDGAYSIEATCHAP------KLEDVYAEVFRVLKPGSLYVSYEWVTTD  232 (359)
Q Consensus       170 ----~~~~i~-------~~~~d~~~~~~~~~~fD~v~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~  232 (359)
                          .++++.       +...|+.  .+....||+|+|..+..++.      -...++++++++|.|||++++    -+.
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv----EPQ  210 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV----EPQ  210 (288)
T ss_pred             ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE----cCC
Confidence                011111       1122222  12346899999987765542      277999999999999999997    222


Q ss_pred             ccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC--CCeEEE
Q 018194          233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV--GFEVVK  276 (359)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--GF~~i~  276 (359)
                      .|........  .......+...-...++....+|-+.  ||+-++
T Consensus       211 pWksY~kaar--~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  211 PWKSYKKAAR--RSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             chHHHHHHHH--HHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence            2222211111  11112223333456778888888766  555443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.17  E-value=8.7e-11  Score=99.36  Aligned_cols=117  Identities=25%  Similarity=0.359  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      .....+...+++..   ...+||||||++|..+..+++.  .+++|+.+|++++..+.|++.+.+.|+.++|+++.+|+.
T Consensus        31 ~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~  107 (205)
T PF01596_consen   31 PETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL  107 (205)
T ss_dssp             HHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred             HHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence            33444444455444   4569999999999999999984  357999999999999999999999999889999999997


Q ss_pred             CC-C-----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          183 KM-P-----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       183 ~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +. +     -+.++||+|+....   -.+....+..+.++|+|||.+++-.
T Consensus       108 ~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  108 EVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             HHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             hhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEcc
Confidence            62 1     11358999998763   2357788899999999999999843

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.17  E-value=1.1e-09  Score=112.03  Aligned_cols=103  Identities=21%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGL---------------DSLCEVVCGNFLKMPF  186 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~~  186 (359)
                      +.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..+++               .++++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            469999999999999999885 457999999999999999999887543               2479999999976431


Q ss_pred             C-CCccceEEecccc--------------ccc--------------------CC----HHHHHHHHHhccCCCCEEEE
Q 018194          187 E-DNHFDGAYSIEAT--------------CHA--------------------PK----LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       187 ~-~~~fD~v~~~~~l--------------~~~--------------------~~----~~~~l~~~~~~LkpgG~l~~  225 (359)
                      . ...||+|+++-.-              .|-                    +|    ...++.++.++|+|||++++
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            1 1369999986321              010                    11    25677888889999998886

>TIGR00417 speE spermidine synthase

Probab=99.17  E-value=4.8e-10  Score=99.85  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL---DSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      .+.+||+||||+|..+..++++. ..+++++|+++.+++.+++.+...+.   .++++++.+|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            34599999999999999988864 46899999999999999998755321   24688888887552 122478999998


Q ss_pred             cccccccC--C--HHHHHHHHHhccCCCCEEEEE
Q 018194          197 IEATCHAP--K--LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       197 ~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .......+  +  ..++++.+.+.|+|||.+++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65422222  2  468899999999999999874

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.17  E-value=6.7e-10  Score=93.76  Aligned_cols=122  Identities=22%  Similarity=0.288  Sum_probs=93.5

Q ss_pred             HHHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          113 MAVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       113 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      .+++.+.. .....|-|+|||.+.++.   . -.-.|+.+|+-+                .+-+++.+|+.+.|+++++.
T Consensus       170 ~ii~~ik~r~~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~sv  229 (325)
T KOG3045|consen  170 VIIRKIKRRPKNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESV  229 (325)
T ss_pred             HHHHHHHhCcCceEEEecccchhhhhh---c-cccceeeeeeec----------------CCCceeeccccCCcCccCcc
Confidence            34444433 345689999999987765   2 234899999842                24578899999999999999


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+++++.+|.- .|+..++.++.|+|||||.+.|.|...                         .+.+...+.+.|...|
T Consensus       230 DvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S-------------------------Rf~dv~~f~r~l~~lG  283 (325)
T KOG3045|consen  230 DVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS-------------------------RFSDVKGFVRALTKLG  283 (325)
T ss_pred             cEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh-------------------------hcccHHHHHHHHHHcC
Confidence            99998887764 589999999999999999999976322                         3345667889999999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |.+......
T Consensus       284 F~~~~~d~~  292 (325)
T KOG3045|consen  284 FDVKHKDVS  292 (325)
T ss_pred             Ceeeehhhh
Confidence            998776543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.17  E-value=4.3e-09  Score=94.80  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-cCCCCCC----CCCCccceE
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVC-GNFLKMP----FEDNHFDGA  194 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~fD~v  194 (359)
                      .+.++||||||+|.+...++. .++.+++|+|+++.+++.|+++++.. ++..+|++.. .|..++.    .+.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            467999999999988877765 46789999999999999999999998 7888888864 3332221    245789999


Q ss_pred             EecccccccCCH-----HHHHHHH----------------HhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh-cCC
Q 018194          195 YSIEATCHAPKL-----EDVYAEV----------------FRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE-RGD  252 (359)
Q Consensus       195 ~~~~~l~~~~~~-----~~~l~~~----------------~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  252 (359)
                      +|+--++.-.+.     ..-.+++                .+++.+||.+.++.-...        .......... .-.
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~--------eS~~~~~~~gwfts  265 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE--------ESKAFAKQVLWFTS  265 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH--------HHHHHHhhCcEEEE
Confidence            998765532211     1112222                234456666554321111        1111111100 001


Q ss_pred             CCCCCCCHHHHHHHHHhCCCeEEEEEecCCCC
Q 018194          253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAKPP  284 (359)
Q Consensus       253 ~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~  284 (359)
                      ....-.+...+.+.|++.|...+.+..+.+..
T Consensus       266 mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~  297 (321)
T PRK11727        266 LVSKKENLPPLYRALKKVGAVEVKTIEMAQGQ  297 (321)
T ss_pred             EeeccCCHHHHHHHHHHcCCceEEEEEEeCCC
Confidence            12233478899999999999888777775544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.15  E-value=5.1e-10  Score=94.33  Aligned_cols=117  Identities=14%  Similarity=0.018  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C
Q 018194          108 RLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P  185 (359)
Q Consensus       108 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~  185 (359)
                      ....+.++..+. ..++.+|||+|||+|.++..++.....+|+++|+++..++.++++++..++. +++++++|+.+. +
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~  116 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLA  116 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHh
Confidence            344444444442 2457899999999999998654433469999999999999999999888764 799999998763 2


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHh--ccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFR--VLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~  226 (359)
                      ....+||+|++.-... -.-...+++.+..  +|+|+|.+++.
T Consensus       117 ~~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        117 QPGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             hcCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            2235799999976532 1224455565554  47898887763

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.13  E-value=1.4e-10  Score=102.84  Aligned_cols=112  Identities=21%  Similarity=0.213  Sum_probs=89.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+.+.-.+-.+..|||+|||||.++...|+....+|+++|.|.-+ +.|++.+..+++.+.|+++++.+++..+|.++.
T Consensus        50 ~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKV  128 (346)
T KOG1499|consen   50 NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKV  128 (346)
T ss_pred             HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccce
Confidence            3344444455789999999999999999999766799999987655 999999999999988999999999987778899


Q ss_pred             ceEEeccccccc---CCHHHHHHHHHhccCCCCEEE
Q 018194          192 DGAYSIEATCHA---PKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       192 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      |+|++-++-+.+   .-...+|-.=-+.|+|||.++
T Consensus       129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            999997754433   124455555558899999986

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.13  E-value=7e-10  Score=91.87  Aligned_cols=107  Identities=25%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCcc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMP----FEDNHF  191 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~f  191 (359)
                      ...++.+|||+|||+|..+..++.. ...+|+..|.++ .++..+.+++..+  ...++.+...|..+..    ....+|
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            3456789999999999999999886 567999999998 8898988887765  4567888888876521    344689


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+|++..+++.-...+.+++.+.++|+|+|.+++.
T Consensus       121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            99999999998778899999999999999996664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.13  E-value=1.2e-09  Score=97.54  Aligned_cols=116  Identities=27%  Similarity=0.362  Sum_probs=95.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMPFE  187 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~  187 (359)
                      ...+.+.++..+++|..|||-=||||.+..+..- .|++++|.|++..|++-++.+.+..++.+ ..+... |+..+|++
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~  261 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR  261 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence            4456677788899999999999999999988766 58999999999999999999999888654 444444 99999999


Q ss_pred             CCccceEEeccccccc-----CC----HHHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHA-----PK----LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~-----~~----~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++++|.|++---..-.     ..    ..++|+.+.++||+||++++.
T Consensus       262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            8899999985432211     11    568999999999999999984

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.12  E-value=1.6e-10  Score=96.13  Aligned_cols=143  Identities=27%  Similarity=0.428  Sum_probs=102.0

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCC--CCCCCccce
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-DSLCEVVCGNFLKM--PFEDNHFDG  193 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~fD~  193 (359)
                      .+..+.|.+|||.+.|-|..++..++....+|+.++.+|..++.|+-+-=..++ ..+|+++.+|+.+.  .|++++||+
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa  208 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA  208 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence            345667999999999999999998886334999999999999887654222221 23689999999874  488999999


Q ss_pred             EEeccc-ccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          194 AYSIEA-TCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       194 v~~~~~-l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      |+-.-. +.+..  --.+++++++|+|||||+++-+.-.+...+.                    ..--+..+.+.|+++
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr--------------------G~d~~~gVa~RLr~v  268 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR--------------------GLDLPKGVAERLRRV  268 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc--------------------cCChhHHHHHHHHhc
Confidence            974221 11111  2468999999999999999865322221111                    111346888999999


Q ss_pred             CCeEEEEEe
Q 018194          271 GFEVVKEKD  279 (359)
Q Consensus       271 GF~~i~~~~  279 (359)
                      ||++++...
T Consensus       269 GF~~v~~~~  277 (287)
T COG2521         269 GFEVVKKVR  277 (287)
T ss_pred             Cceeeeeeh
Confidence            999887543

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=99.12  E-value=1.6e-10  Score=77.50  Aligned_cols=63  Identities=49%  Similarity=0.784  Sum_probs=59.7

Q ss_pred             hhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCC
Q 018194          292 LKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPH  354 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~  354 (359)
                      ++...+++|+.+.+...+|.++++|++..++.+.|....+.+.++|+.++|+|||++++|||+
T Consensus         5 ~r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPMyl~v~RKP~   67 (67)
T PF08498_consen    5 FRMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPMYLFVARKPE   67 (67)
T ss_pred             EeccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCchhheeeccCC
Confidence            356778899999999999999999999999999999999999999999999999999999996

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.08  E-value=7.4e-10  Score=96.24  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-C----CCc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-E----DNH  190 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~----~~~  190 (359)
                      ..+..+|||||+++|..+..++..  .+.+|+.+|.+++..+.|++.+++.|+.++|+++.+|+.+. + + +    .++
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            334579999999999999999874  45799999999999999999999999999999999998773 2 1 1    268


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ||+|+...-   -.+....+..+.++|+|||.+++
T Consensus       157 fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        157 FDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             ccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEE
Confidence            999998653   22466788888999999999887

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.07  E-value=1.1e-09  Score=96.82  Aligned_cols=87  Identities=20%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++..   .++++++++|+.+++++
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~   90 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP   90 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch
Confidence            345667777788888999999999999999999997 56999999999999999987754   24799999999987754


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                        .||.|+++...
T Consensus        91 --~~d~Vv~NlPy  101 (258)
T PRK14896         91 --EFNKVVSNLPY  101 (258)
T ss_pred             --hceEEEEcCCc
Confidence              48999887654

>PHA03412 putative methyltransferase; Provisional

Probab=99.07  E-value=7.5e-10  Score=94.20  Aligned_cols=93  Identities=17%  Similarity=0.217  Sum_probs=73.2

Q ss_pred             CCEEEEECCCCChHHHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          123 GDRILDVGCGVGGPMRAIAAH----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      +.+|||+|||+|.++..+++.    ...+|+++|+++.+++.|+++.      .++.++++|+...++ +++||+|+++-
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP  122 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP  122 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence            679999999999999988864    2469999999999999999764      247899999987654 46899999986


Q ss_pred             cccccC--C----------HHHHHHHHHhccCCCCE
Q 018194          199 ATCHAP--K----------LEDVYAEVFRVLKPGSL  222 (359)
Q Consensus       199 ~l~~~~--~----------~~~~l~~~~~~LkpgG~  222 (359)
                      -..-..  +          ...++..+.++++||+.
T Consensus       123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            554221  1          34688888887777664

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.07  E-value=4.6e-09  Score=93.49  Aligned_cols=147  Identities=19%  Similarity=0.255  Sum_probs=107.5

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  203 (359)
                      ...+|+|.|.|..+..+.... .+|-+++++...+-.+..... .|    |+.+.+|...- .|.+  |+|++.+++||+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~~--daI~mkWiLhdw  249 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPKG--DAIWMKWILHDW  249 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCCc--CeEEEEeecccC
Confidence            789999999999999998853 368888988887776665543 22    78889998875 5544  799999999999


Q ss_pred             CC--HHHHHHHHHhccCCCCEEEEEEeeeCc--ccc---cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          204 PK--LEDVYAEVFRVLKPGSLYVSYEWVTTD--KYE---AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       204 ~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      +|  ..++|++++..|+|||.+++.|...+.  ..+   .................+  .-++..+++.++.++||.+.+
T Consensus       250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G--kert~~e~q~l~~~~gF~~~~  327 (342)
T KOG3178|consen  250 TDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG--KERTLKEFQALLPEEGFPVCM  327 (342)
T ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc--eeccHHHHHhcchhhcCceeE
Confidence            85  679999999999999999999975543  111   111112222222222222  235789999999999999988


Q ss_pred             EEecC
Q 018194          277 EKDLA  281 (359)
Q Consensus       277 ~~~~~  281 (359)
                      .....
T Consensus       328 ~~~~~  332 (342)
T KOG3178|consen  328 VALTA  332 (342)
T ss_pred             EEecc
Confidence            76543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.06  E-value=1.8e-09  Score=92.50  Aligned_cols=102  Identities=25%  Similarity=0.346  Sum_probs=87.7

Q ss_pred             CEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccc
Q 018194          124 DRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEA  199 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~  199 (359)
                      ..+||||||.|.+...+|+ .|...++|||+....+..+.+++.+.+++ |+.+++.|+..+-   +++++.|-|+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            5899999999999999998 58899999999999999999999999986 8999999998742   45569999999875


Q ss_pred             ccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          200 TCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      =-|...        ...+++.+.++|+|||.|.+.
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            444321        358999999999999999884

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=2.3e-09  Score=86.94  Aligned_cols=136  Identities=17%  Similarity=0.189  Sum_probs=94.6

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      ...-.|..|+|+|||||.++...+-....+|+|+|+++++++.+++++.+  +..++.|+.+|+.+.   ...+|.|+++
T Consensus        41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---~~~~dtvimN  115 (198)
T COG2263          41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---RGKFDTVIMN  115 (198)
T ss_pred             cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---CCccceEEEC
Confidence            34446789999999999999988776457999999999999999999988  346799999999886   3678988887


Q ss_pred             cccccc---CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194          198 EATCHA---PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       198 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                      --+.-.   .|.. ++....+..   -.++-.                            ...-+.+.+.+..+++|+++
T Consensus       116 PPFG~~~rhaDr~-Fl~~Ale~s---~vVYsi----------------------------H~a~~~~f~~~~~~~~G~~v  163 (198)
T COG2263         116 PPFGSQRRHADRP-FLLKALEIS---DVVYSI----------------------------HKAGSRDFVEKFAADLGGTV  163 (198)
T ss_pred             CCCccccccCCHH-HHHHHHHhh---heEEEe----------------------------eccccHHHHHHHHHhcCCeE
Confidence            655432   2433 334444332   111110                            01124577888999999988


Q ss_pred             EEEE--ecCCCCCCchhh
Q 018194          275 VKEK--DLAKPPAQPWWT  290 (359)
Q Consensus       275 i~~~--~~~~~~~~~w~~  290 (359)
                      ....  .+..+...+|..
T Consensus       164 ~~~~~~~~~iP~~y~fH~  181 (198)
T COG2263         164 THIERARFPIPRTYPFHR  181 (198)
T ss_pred             EEEEEEEEecCccCchhh
Confidence            7654  443444455554

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.05  E-value=1.4e-09  Score=91.27  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             CCCEEEEECCCCCh----HHHHHHhh----c--CCEEEEEeCCHHHHHHHHHHH--------------HH-----cC---
Q 018194          122 AGDRILDVGCGVGG----PMRAIAAH----S--RANVVGITINEYQVNRARLHN--------------KK-----AG---  169 (359)
Q Consensus       122 ~~~~vLDiGcG~G~----~~~~l~~~----~--~~~v~g~D~s~~~~~~a~~~~--------------~~-----~~---  169 (359)
                      +..+|+..||++|.    ++..+.+.    .  ..+|+|+|+|+.+++.|++-.              .+     .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            55799999999997    22233331    1  369999999999999998631              00     00   


Q ss_pred             -----CCCCeEEEEcCCCCCCCCCCccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEE
Q 018194          170 -----LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       170 -----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~  226 (359)
                           +..+|.|.+.|+.+.+.+.+.||+|+|++++.++..  ...+++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 124799999999984445689999999999999964  679999999999999999983

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.03  E-value=1.6e-09  Score=96.90  Aligned_cols=90  Identities=24%  Similarity=0.307  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++++|+.+.++ 
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-   99 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-   99 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-
Confidence            345567777888889999999999999999999886 468999999999999999998876655689999999988654 


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                       ..||.|+++...
T Consensus       100 -~~~d~VvaNlPY  111 (294)
T PTZ00338        100 -PYFDVCVANVPY  111 (294)
T ss_pred             -cccCEEEecCCc
Confidence             368998876543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.03  E-value=1.1e-08  Score=80.92  Aligned_cols=145  Identities=14%  Similarity=0.204  Sum_probs=110.3

Q ss_pred             HHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEE
Q 018194           73 VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVG  150 (359)
Q Consensus        73 v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g  150 (359)
                      ++.-++..-.|+..+.......+.-.|..      ....+.+...++...|..|||+|.|||.++..+.++  ....++.
T Consensus         5 ~~~~f~~e~~F~k~wi~~PrtVGaI~PsS------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~   78 (194)
T COG3963           5 LARKFDEEISFFKGWIDNPRTVGAILPSS------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTA   78 (194)
T ss_pred             hhhhHHHHHHHHHHHhcCCceeeeecCCc------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEE
Confidence            34455555566666555444444333333      334566777888889999999999999999999875  3469999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEE
Q 018194          151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLY  223 (359)
Q Consensus       151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l  223 (359)
                      ++.|++.+....++..      .+.++.+|+.++.     +++..||.|+|..-+-.+|  -..+.|+.+...|.+||.+
T Consensus        79 iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~l  152 (194)
T COG3963          79 IEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPL  152 (194)
T ss_pred             EEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeE
Confidence            9999999998887753      4679999998865     5567899999988877776  3568999999999999999


Q ss_pred             EEEEee
Q 018194          224 VSYEWV  229 (359)
Q Consensus       224 ~~~~~~  229 (359)
                      +...+.
T Consensus       153 vqftYg  158 (194)
T COG3963         153 VQFTYG  158 (194)
T ss_pred             EEEEec
Confidence            976544

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.03  E-value=4.5e-09  Score=97.85  Aligned_cols=131  Identities=15%  Similarity=0.087  Sum_probs=95.3

Q ss_pred             ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194           91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      .+.+++...........+.+...+...+...++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++++..++
T Consensus       202 ~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~  280 (374)
T TIGR02085       202 PLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL  280 (374)
T ss_pred             EEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            45566554445555555666666666655445679999999999999999975 57999999999999999999988887


Q ss_pred             CCCeEEEEcCCCCCCC-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          171 DSLCEVVCGNFLKMPF-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       171 ~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      . ++++..+|+.+... ..++||+|++.-.-.  .-...+++.+. .++|++.+++.
T Consensus       281 ~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       281 D-NLSFAALDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             C-cEEEEECCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEE
Confidence            4 89999999976421 124699998864321  11345555554 47999888874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.02  E-value=4.9e-09  Score=87.22  Aligned_cols=116  Identities=22%  Similarity=0.340  Sum_probs=85.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRAN---------VVGITINEYQVNRARLHNKKAGLDSLCEVVC  178 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~  178 (359)
                      .....++.+...+++..|||--||+|.+..+.+.. .+..         ++|.|+++.+++.+++++...++...+.+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            44555677777888999999999999999887653 3334         8999999999999999999999988899999


Q ss_pred             cCCCCCCCCCCccceEEeccccccc-C---C----HHHHHHHHHhccCCCCEEE
Q 018194          179 GNFLKMPFEDNHFDGAYSIEATCHA-P---K----LEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       179 ~d~~~~~~~~~~fD~v~~~~~l~~~-~---~----~~~~l~~~~~~LkpgG~l~  224 (359)
                      .|+.++++.++++|.|+++--...- .   +    ...+++++.++|+|...++
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l  148 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL  148 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred             cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            9999998777899999998655432 1   1    3467888899999933333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=1.2e-08  Score=87.07  Aligned_cols=138  Identities=17%  Similarity=0.254  Sum_probs=110.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-  187 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  187 (359)
                      ...|+..+.+.||.+|||-|+|+|.++..+++.  +..+++.+|+.....+.|++.+++.++++|+++.+-|++...|. 
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            467888999999999999999999999999985  44699999999999999999999999999999999999986654 


Q ss_pred             -CCccceEEecccccccCCHHHHHHHHHhccCCCCE-EEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194          188 -DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL-YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITE  265 (359)
Q Consensus       188 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (359)
                       ...+|.|+..     +|.+..++-.++.+||.+|. ++....           -    +..            .+.-.+
T Consensus       174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSP-----------C----IEQ------------vqrtce  221 (314)
T KOG2915|consen  174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSP-----------C----IEQ------------VQRTCE  221 (314)
T ss_pred             cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccH-----------H----HHH------------HHHHHH
Confidence             4678888774     57888889999999998874 443211           1    111            123446


Q ss_pred             HHHhCCCeEEEEEec
Q 018194          266 IAKRVGFEVVKEKDL  280 (359)
Q Consensus       266 ~l~~aGF~~i~~~~~  280 (359)
                      +|+++||..++.-.+
T Consensus       222 ~l~~~gf~~i~~vEv  236 (314)
T KOG2915|consen  222 ALRSLGFIEIETVEV  236 (314)
T ss_pred             HHHhCCCceEEEEEe
Confidence            788999998876544

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.02  E-value=8.4e-09  Score=88.03  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=89.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 018194           99 PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV  177 (359)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~  177 (359)
                      |....++..+...+.+.+.-.. .+..|||+|||+|..+..++. .+.+.|+++|.|+.++..|.+++.+.++.+.+.++
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~-~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~  204 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHS-KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI  204 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhc-ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence            3333344444444444333333 345899999999999998887 46789999999999999999999999999899988


Q ss_pred             EcCCCC-----CCCCCCccceEEecccccccCC--------------------------HHHHHHHHHhccCCCCEEEE
Q 018194          178 CGNFLK-----MPFEDNHFDGAYSIEATCHAPK--------------------------LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       178 ~~d~~~-----~~~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +.+++.     .+...+++|+++++--.-.-.|                          ...++.-+.|+|+|||.+.+
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            665543     2245689999998743211111                          23456667799999999887

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.01  E-value=6.9e-09  Score=90.86  Aligned_cols=105  Identities=19%  Similarity=0.182  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCCh----HHHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHH-----cCC----------------
Q 018194          122 AGDRILDVGCGVGG----PMRAIAAHS------RANVVGITINEYQVNRARLHNKK-----AGL----------------  170 (359)
Q Consensus       122 ~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~-----~~~----------------  170 (359)
                      ...+|.-+||+||.    ++..+.+..      ..+|+|+|+|...++.|+.-.-.     .++                
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36799999999997    333333432      47999999999999998753211     111                


Q ss_pred             -------CCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          171 -------DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       171 -------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                             ...|.|...|+.+.++..+.||+|+|++++.++.  ...++++.++..|+|||.|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   1468888999887663457899999999999996  4678999999999999999983

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.01  E-value=9.5e-10  Score=97.50  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             CCEEEEECCCCChH----HHHHHhhc-----CCEEEEEeCCHHHHHHHHHHH------------------HH--------
Q 018194          123 GDRILDVGCGVGGP----MRAIAAHS-----RANVVGITINEYQVNRARLHN------------------KK--------  167 (359)
Q Consensus       123 ~~~vLDiGcG~G~~----~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~------------------~~--------  167 (359)
                      ..+|+..||.||.=    +..+.+..     ..+|+|+|+|+.+++.|++-.                  ..        
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            47999999999972    22233321     368999999999999998642                  00        


Q ss_pred             ----cCCCCCeEEEEcCCCCCCCC-CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          168 ----AGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       168 ----~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                          ..+...|.|.+.|+.+.+++ .+.||+|+|.+++.|++  ....+++++.+.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                01235789999999885543 57899999999999995  4789999999999999998873

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.01  E-value=1.7e-09  Score=96.41  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.+++.+.+.++.+|||||||+|.++..+++.. .+|+|+|+++.|++.++++...    ++++++++|+.++++++-
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~  104 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL  104 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence            44567777788889999999999999999999974 4999999999999999887632    479999999998876532


Q ss_pred             ccceEEeccc
Q 018194          190 HFDGAYSIEA  199 (359)
Q Consensus       190 ~fD~v~~~~~  199 (359)
                      .+|.|+++-.
T Consensus       105 ~~~~vv~NlP  114 (272)
T PRK00274        105 QPLKVVANLP  114 (272)
T ss_pred             CcceEEEeCC
Confidence            2577877643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.99  E-value=1.8e-08  Score=87.97  Aligned_cols=145  Identities=22%  Similarity=0.285  Sum_probs=102.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK----------------------------------  167 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~----------------------------------  167 (359)
                      ...+||--|||.|+++.++|.. |..+.|.|.|-.|+-..+-....                                  
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            4579999999999999999996 78999999999996543332110                                  


Q ss_pred             -----cCCCCCeEEEEcCCCCCCCCC---CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch
Q 018194          168 -----AGLDSLCEVVCGNFLKMPFED---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK  239 (359)
Q Consensus       168 -----~~~~~~i~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  239 (359)
                           ...+.+.+...+|+.+.-.++   ++||+|+..+.+...++..+.|+.+.++|||||..+=.-   +-.|.... 
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~G---PLlyh~~~-  210 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFG---PLLYHFEP-  210 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecC---CccccCCC-
Confidence                 001235677788887754344   799999999988888899999999999999999665321   10000000 


Q ss_pred             HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                              ........--.+.+++.++++..||+++..+.
T Consensus       211 --------~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  211 --------MSIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             --------CCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                    00000111234789999999999999998766

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2.7e-09  Score=87.53  Aligned_cols=113  Identities=24%  Similarity=0.246  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhcC--CCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCC---------CCC
Q 018194          108 RLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGL---------DSL  173 (359)
Q Consensus       108 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~---------~~~  173 (359)
                      ..+...+++.|.  +.||.+.||+|+|+|.++..++..   ++..++|||.-++.++.++++..+.--         ..+
T Consensus        66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~  145 (237)
T KOG1661|consen   66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE  145 (237)
T ss_pred             hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence            334455666665  789999999999999999988864   344559999999999999998776431         236


Q ss_pred             eEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          174 CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       174 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.++.+|....--+.++||.|++....      .+..+++...|+|||++++-
T Consensus       146 l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  146 LSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             eEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence            788999998866667899999997543      34456778889999999983

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.98  E-value=8.6e-09  Score=97.38  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             CCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          123 GDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      +..|+|||||+|.++...++..     ..+|++++-|+.++...+++....++.++|+++++|++++..+ .+.|+|++-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence            5789999999999987665531     3699999999999988888877888889999999999998765 489999985


Q ss_pred             cccccc--CCHHHHHHHHHhccCCCCEEE
Q 018194          198 EATCHA--PKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       198 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      ..-...  .-..++|....|.|||||.++
T Consensus       266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  266 LLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            432222  235578899999999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.97  E-value=1e-08  Score=85.15  Aligned_cols=126  Identities=21%  Similarity=0.309  Sum_probs=98.7

Q ss_pred             EEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194          125 RILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  203 (359)
                      +++|||+|.|..+..++- .|..+++.+|.+..-+...+......+++ |+++++..+++ +....+||+|+++.+    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv----  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV----  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh----
Confidence            899999999999999886 57789999999999999999999999986 89999999998 445689999999885    


Q ss_pred             CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          204 PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       204 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      .....++.-+...+++||.+++.-   ...      ...                ...+....++..|.+...+..+.
T Consensus       125 ~~l~~l~~~~~~~l~~~G~~l~~K---G~~------~~~----------------El~~~~~~~~~~~~~~~~v~~~~  177 (184)
T PF02527_consen  125 APLDKLLELARPLLKPGGRLLAYK---GPD------AEE----------------ELEEAKKAWKKLGLKVLSVPEFE  177 (184)
T ss_dssp             SSHHHHHHHHGGGEEEEEEEEEEE---SS--------HH----------------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred             cCHHHHHHHHHHhcCCCCEEEEEc---CCC------hHH----------------HHHHHHhHHHHhCCEEeeecccc
Confidence            578899999999999999999842   110      000                11355667778888887776663

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.95  E-value=1.1e-08  Score=85.81  Aligned_cols=103  Identities=15%  Similarity=0.030  Sum_probs=77.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-ccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-EDN-HFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD~v~~~  197 (359)
                      .+.+|||++||+|.++.+++.+...+|+++|.++.+++.++++.+..++.++++++.+|+.+. . + ... .||+|+..
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            578999999999999999998744599999999999999999999888877899999999552 1 1 122 36777765


Q ss_pred             ccccccCCHHHHHHHHH--hccCCCCEEEE
Q 018194          198 EATCHAPKLEDVYAEVF--RVLKPGSLYVS  225 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~--~~LkpgG~l~~  225 (359)
                      -... ......++..+.  .+|+++|.+++
T Consensus       129 PPy~-~~~~~~~l~~l~~~~~l~~~~iiv~  157 (189)
T TIGR00095       129 PPFF-NGALQALLELCENNWILEDTVLIVV  157 (189)
T ss_pred             cCCC-CCcHHHHHHHHHHCCCCCCCeEEEE
Confidence            4332 223455555554  46888887765

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.93  E-value=1.7e-08  Score=88.46  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=81.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      .+..|||+|||+|.++...++....+|++++-| +|.+.|++..+.+.+.++|.++.+.+++..+| ++.|+|++--+-.
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~  254 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY  254 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence            578999999999999998888655799999975 78999999999999999999999999998876 6789999854332


Q ss_pred             ccCC--HHHHHHHHHhccCCCCEEE
Q 018194          202 HAPK--LEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       202 ~~~~--~~~~l~~~~~~LkpgG~l~  224 (359)
                      .+-+  ..+..-..++.|||.|..+
T Consensus       255 mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  255 MLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             hhhhHHHHHHHHHHHhhcCCCCccc
Confidence            2222  3344455679999999886

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.91  E-value=1.5e-08  Score=87.82  Aligned_cols=162  Identities=18%  Similarity=0.196  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhcCCC-CCCEEEEECCCC--ChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          108 RLHEEMAVDLIDVK-AGDRILDVGCGV--GGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       108 ~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      +.+.....+.+-.. .-...||||||-  -....++++  .+.++|+-+|++|..+..++.......- ....++++|+.
T Consensus        53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r  131 (267)
T PF04672_consen   53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLR  131 (267)
T ss_dssp             HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT
T ss_pred             HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCC
Confidence            33333344444333 335899999994  447778877  4789999999999999999988765421 23899999998


Q ss_pred             CCC--CC----CCccc-----eEEecccccccC---CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194          183 KMP--FE----DNHFD-----GAYSIEATCHAP---KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI  248 (359)
Q Consensus       183 ~~~--~~----~~~fD-----~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
                      +..  +.    .+-+|     .+++..++||++   ++..+++.++..|.||.+|++...+...  .  ..........+
T Consensus       132 ~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~--~--p~~~~~~~~~~  207 (267)
T PF04672_consen  132 DPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG--A--PERAEALEAVY  207 (267)
T ss_dssp             -HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT--S--HHHHHHHHHHH
T ss_pred             CHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC--C--HHHHHHHHHHH
Confidence            742  11    12333     678888999996   4889999999999999999997654321  1  11122222333


Q ss_pred             hcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          249 ERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      ........+++.+++.++|.  ||+.++
T Consensus       208 ~~~~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  208 AQAGSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             HHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred             HcCCCCceecCHHHHHHHcC--CCccCC
Confidence            33334446778999999987  999875

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.88  E-value=3.5e-08  Score=87.12  Aligned_cols=85  Identities=22%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+...++.+|||+|||+|.++..+++.. ..|+++|+++.+++.++++...   ..+++++++|+.+.+++ 
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence            445667777788889999999999999999999864 5799999999999999877643   35799999999987754 


Q ss_pred             Cccc---eEEeccc
Q 018194          189 NHFD---GAYSIEA  199 (359)
Q Consensus       189 ~~fD---~v~~~~~  199 (359)
                       .+|   +|+++..
T Consensus        91 -~~d~~~~vvsNlP  103 (253)
T TIGR00755        91 -DFPKQLKVVSNLP  103 (253)
T ss_pred             -HcCCcceEEEcCC
Confidence             466   6666543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.87  E-value=4.5e-08  Score=84.08  Aligned_cols=141  Identities=15%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             HHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCC-----C
Q 018194          114 AVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNFLKMP-----F  186 (359)
Q Consensus       114 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~-----~  186 (359)
                      ++..+.+ .++.+|||+|||||.++..+++....+|+++|+++.|+....+.      .+++ .+...|+....     .
T Consensus        66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~------~~~v~~~~~~ni~~~~~~~~~~  139 (228)
T TIGR00478        66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ------DERVKVLERTNIRYVTPADIFP  139 (228)
T ss_pred             HHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc------CCCeeEeecCCcccCCHhHcCC
Confidence            4444443 36789999999999999999997445899999999888762211      1122 23333444221     1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC----CCCCHHH
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP----GLRSYAE  262 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  262 (359)
                      .-..+|++++...        ..+..+.+.|+| |.+++.-   .+.+....       .....+.-..    +..-...
T Consensus       140 d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~---KPqFE~~~-------~~~~~~giv~~~~~~~~~~~~  200 (228)
T TIGR00478       140 DFATFDVSFISLI--------SILPELDLLLNP-NDLTLLF---KPQFEAGR-------EKKNKKGVVRDKEAIALALHK  200 (228)
T ss_pred             CceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEc---ChHhhhcH-------hhcCcCCeecCHHHHHHHHHH
Confidence            2235676665443        357889999999 7766531   11111000       0000100000    1112356


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 018194          263 ITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~  279 (359)
                      +...+.+.||+++....
T Consensus       201 ~~~~~~~~~~~~~~~~~  217 (228)
T TIGR00478       201 VIDKGESPDFQEKKIIF  217 (228)
T ss_pred             HHHHHHcCCCeEeeEEE
Confidence            67778889999887654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=7.9e-09  Score=79.57  Aligned_cols=91  Identities=15%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +...+-.-.+--.|++++|+|||.|.++...+-.....|+|+|++|+.++.+++++++..+  ++.+.++|+.++.+..+
T Consensus        36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g  113 (185)
T KOG3420|consen   36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGG  113 (185)
T ss_pred             HHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCC
Confidence            3344444455457899999999999999766654456999999999999999999988765  47999999999877779


Q ss_pred             ccceEEecccccc
Q 018194          190 HFDGAYSIEATCH  202 (359)
Q Consensus       190 ~fD~v~~~~~l~~  202 (359)
                      .||.++.+--+..
T Consensus       114 ~fDtaviNppFGT  126 (185)
T KOG3420|consen  114 IFDTAVINPPFGT  126 (185)
T ss_pred             eEeeEEecCCCCc
Confidence            9999998876654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=2.8e-07  Score=77.88  Aligned_cols=129  Identities=22%  Similarity=0.255  Sum_probs=102.5

Q ss_pred             CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc-cceEEecccc
Q 018194          123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH-FDGAYSIEAT  200 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-fD~v~~~~~l  200 (359)
                      +.+++|||+|.|..+..+|- .++.+|+.+|....-+...+....+.+++ |++++++.+++..-. .. ||+|+++.+ 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv-  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV-  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence            58999999999999999884 67889999999999999999999998885 799999999987521 23 999999875 


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                         .+...++.-+...+|+||.++..-+..             ...            -..+........|+.++.+..+
T Consensus       145 ---a~L~~l~e~~~pllk~~g~~~~~k~~~-------------~~~------------e~~e~~~a~~~~~~~~~~~~~~  196 (215)
T COG0357         145 ---ASLNVLLELCLPLLKVGGGFLAYKGLA-------------GKD------------ELPEAEKAILPLGGQVEKVFSL  196 (215)
T ss_pred             ---cchHHHHHHHHHhcccCCcchhhhHHh-------------hhh------------hHHHHHHHHHhhcCcEEEEEEe
Confidence               567888889999999999887521110             000            1246777888889999988877


Q ss_pred             CC
Q 018194          281 AK  282 (359)
Q Consensus       281 ~~  282 (359)
                      ..
T Consensus       197 ~~  198 (215)
T COG0357         197 TV  198 (215)
T ss_pred             ec
Confidence            54

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.84  E-value=1.7e-08  Score=84.76  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+.+.  ..++.+|+|+.||.|.++..+|+. .++.|+++|++|..++..++.++..++..++...++|+.++.. .+.
T Consensus        93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~  169 (200)
T PF02475_consen   93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK  169 (200)
T ss_dssp             HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-
T ss_pred             HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc
Confidence            344444  567899999999999999999983 4568999999999999999999999999899999999988754 689


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      ||.|++...    +.-..+|..+.+++++||.+-
T Consensus       170 ~drvim~lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  170 FDRVIMNLP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             cCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence            999988653    234468888999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.78  E-value=9.5e-08  Score=90.74  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=85.3

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAY  195 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~  195 (359)
                      +..+|.+|||++||.|.=+..++...  ...|+++|+++..++..++++++.|+. |+.+...|...+. ...+.||.|+
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEE
Confidence            67899999999999999999998853  359999999999999999999999985 6888899987653 2236799998


Q ss_pred             ecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...      ++..-|+                ..++|.++.++|||||+++...
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            422      1111111                2578999999999999997643

>PRK04148 hypothetical protein; Provisional

Probab=98.78  E-value=1.1e-07  Score=73.97  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCCh-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-C
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-D  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~  188 (359)
                      .+++.+.+....+.+|||||||+|. ++..|++. |.+|+++|+++..++.+++.        .++++.+|+.+.++. -
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y   75 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIY   75 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHH
Confidence            3445555555567899999999996 88888864 78999999999999888765        268999999885432 2


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..+|+|++...   -++....+.++.+.+  |.-+++.
T Consensus        76 ~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~  108 (134)
T PRK04148         76 KNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIK  108 (134)
T ss_pred             hcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEE
Confidence            56899998653   235555666666543  4456554

>PRK00536 speE spermidine synthase; Provisional

Probab=98.78  E-value=2.3e-07  Score=81.20  Aligned_cols=97  Identities=11%  Similarity=-0.007  Sum_probs=76.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      +...+||=||.|.|..++++.+++. +|+.+|+++.+++.+++.+....   -.++++++.. +.+  ...++||+|++.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            4568999999999999999999864 99999999999999999655421   1356777652 211  123689999986


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..     ....+++.+++.|+|||.++..
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEEC
Confidence            43     3478889999999999999873

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=6.6e-07  Score=71.99  Aligned_cols=126  Identities=17%  Similarity=0.211  Sum_probs=92.5

Q ss_pred             CCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ..-++|||||+|..+..|++.  +++.+.++|++|..++..++.+..++.  ++..++.|+..- +..++.|+++.+-..
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY  120 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY  120 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence            568999999999999999984  567899999999999988888777654  478899998763 334889988876432


Q ss_pred             cccC-----------------C----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCC
Q 018194          201 CHAP-----------------K----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS  259 (359)
Q Consensus       201 ~~~~-----------------~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (359)
                      ---+                 +    .++++..+-.+|.|.|.+++.....                           -.
T Consensus       121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---------------------------N~  173 (209)
T KOG3191|consen  121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---------------------------NK  173 (209)
T ss_pred             CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh---------------------------cC
Confidence            1110                 1    2456777778889999998752111                           13


Q ss_pred             HHHHHHHHHhCCCeEEEEE
Q 018194          260 YAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i~~~  278 (359)
                      +.++.+.++.-||......
T Consensus       174 p~ei~k~l~~~g~~~~~~~  192 (209)
T KOG3191|consen  174 PKEILKILEKKGYGVRIAM  192 (209)
T ss_pred             HHHHHHHHhhcccceeEEE
Confidence            4678888999999876543

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=6.6e-08  Score=83.79  Aligned_cols=88  Identities=18%  Similarity=0.226  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+.....+.+++.|||||+|.|.+|..|++. +.+|+++++++.+++..+++..   ..+|++++++|+...+++
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence            344678888888889999999999999999999996 5689999999999999988865   246899999999998876


Q ss_pred             CC-ccceEEeccc
Q 018194          188 DN-HFDGAYSIEA  199 (359)
Q Consensus       188 ~~-~fD~v~~~~~  199 (359)
                      .- .++.|+++--
T Consensus        92 ~l~~~~~vVaNlP  104 (259)
T COG0030          92 SLAQPYKVVANLP  104 (259)
T ss_pred             hhcCCCEEEEcCC
Confidence            43 5788888653

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.76  E-value=1.2e-07  Score=87.32  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCC
Q 018194          106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLK  183 (359)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~  183 (359)
                      .++..+..+...+   .|++|||+-|=||.++...|.. |+ +|+.||+|...++.|+++++-+|+. .++.|+++|+.+
T Consensus       204 DqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~  279 (393)
T COG1092         204 DQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK  279 (393)
T ss_pred             HhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence            3444444444443   3899999999999999998885 55 9999999999999999999999875 468999999987


Q ss_pred             CC----CCCCccceEEeccccc---------ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc
Q 018194          184 MP----FEDNHFDGAYSIEATC---------HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER  250 (359)
Q Consensus       184 ~~----~~~~~fD~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (359)
                      +-    -...+||+|+..-.-.         -..+...++..+.++|+|||.+++......  .   .  ...       
T Consensus       280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~--~---~--~~~-------  345 (393)
T COG1092         280 WLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH--F---S--SDL-------  345 (393)
T ss_pred             HHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc--c---C--HHH-------
Confidence            42    2335899999743111         123567899999999999999998532111  0   0  000       


Q ss_pred             CCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchh
Q 018194          251 GDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWW  289 (359)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~  289 (359)
                              -.+.+.+.+..+|...........++-.++.
T Consensus       346 --------f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~  376 (393)
T COG1092         346 --------FLEIIARAAAAAGRRAQEIEGEGQPPDHPRN  376 (393)
T ss_pred             --------HHHHHHHHHHhcCCcEEEeeccCCCCCcccc
Confidence                    1135566677777776666544444434443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.76  E-value=4.4e-09  Score=97.65  Aligned_cols=113  Identities=25%  Similarity=0.307  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCC--CCC--CEEEEECCCCChHHHHHHhhcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194          107 TRLHEEMAVDLIDV--KAG--DRILDVGCGVGGPMRAIAAHSRANVVGI---TINEYQVNRARLHNKKAGLDSLCEVVCG  179 (359)
Q Consensus       107 ~~~~~~~~~~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~i~~~~~  179 (359)
                      .....+.|.+.++.  ..+  ..+||+|||+|.++..|.++ +..+..+   |..+.+++.|.++    |++.-+.  ..
T Consensus        98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~--~~  170 (506)
T PF03141_consen   98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIG--VL  170 (506)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhh--hh
Confidence            34445556666654  222  47899999999999999885 3333222   4455666666554    5543221  22


Q ss_pred             CCCCCCCCCCccceEEeccccccc-CCHHHHHHHHHhccCCCCEEEEE
Q 018194          180 NFLKMPFEDNHFDGAYSIEATCHA-PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       180 d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -...+||++++||+|+|..++..+ ++-..+|-++-|+|+|||++++.
T Consensus       171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S  218 (506)
T PF03141_consen  171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS  218 (506)
T ss_pred             ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence            234689999999999999877654 34456889999999999999974

; GO: 0008168 methyltransferase activity

>PLN02823 spermine synthase

Probab=98.75  E-value=7.2e-08  Score=87.75  Aligned_cols=103  Identities=22%  Similarity=0.241  Sum_probs=79.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      ...+||.||+|.|..++++.++. ..+|+.+|+++.+++.+++.+...+   -.++++++.+|+... ....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            45799999999999999998854 4689999999999999999875321   246899999998874 334578999998


Q ss_pred             ccccccc----C---CHHHHHH-HHHhccCCCCEEEE
Q 018194          197 IEATCHA----P---KLEDVYA-EVFRVLKPGSLYVS  225 (359)
Q Consensus       197 ~~~l~~~----~---~~~~~l~-~~~~~LkpgG~l~~  225 (359)
                      ... ...    +   --.++++ .+.+.|+|||.+++
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~  218 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT  218 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence            632 111    1   1346787 89999999999876

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.75  E-value=2e-07  Score=77.85  Aligned_cols=121  Identities=20%  Similarity=0.227  Sum_probs=90.4

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEecccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGAYSIEAT  200 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~~~l  200 (359)
                      .++|||||=+......-  ..-..|+.||+++.                .-.+.+.|+.+.|+|   .+.||+|.+..+|
T Consensus        53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL  114 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVL  114 (219)
T ss_pred             ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence            69999999865543322  22257999999862                125778999988764   6799999999999


Q ss_pred             cccCCHH---HHHHHHHhccCCCCE-----EEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCC
Q 018194          201 CHAPKLE---DVYAEVFRVLKPGSL-----YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGF  272 (359)
Q Consensus       201 ~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF  272 (359)
                      .++|++.   +.++.+.+.|+|+|.     ++++-....         +           .-..+.+.+.+.++|+..||
T Consensus       115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------v-----------~NSRy~~~~~l~~im~~LGf  174 (219)
T PF11968_consen  115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------V-----------TNSRYMTEERLREIMESLGF  174 (219)
T ss_pred             eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------h-----------hcccccCHHHHHHHHHhCCc
Confidence            9999754   799999999999999     776521110         0           01245677899999999999


Q ss_pred             eEEEEEecCC
Q 018194          273 EVVKEKDLAK  282 (359)
Q Consensus       273 ~~i~~~~~~~  282 (359)
                      ..++.+....
T Consensus       175 ~~~~~~~~~K  184 (219)
T PF11968_consen  175 TRVKYKKSKK  184 (219)
T ss_pred             EEEEEEecCe
Confidence            9999876543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.74  E-value=5.9e-08  Score=93.72  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecc
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIE  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~  198 (359)
                      .+..+||||||.|.++..+|. +|...++|+|++...+..+.++....++. |+.++..|+..+  -++++++|.|+.++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            456899999999999999998 58899999999999999998888888874 788888887543  26788999999987


Q ss_pred             cccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          199 ATCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       199 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .=.|...        ...+++.+.++|||||.+.+.
T Consensus       426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            6554321        358999999999999999874

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.73  E-value=2.7e-07  Score=85.57  Aligned_cols=118  Identities=15%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194          101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN  180 (359)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d  180 (359)
                      .......+.+.+.+...+... +.+|||++||+|.++..+++.. .+|+|+|+|+.+++.+++++...++. |++++.+|
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d  262 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMS  262 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECC
Confidence            333445566666666666533 3579999999999999998863 59999999999999999999888874 89999999


Q ss_pred             CCCC-C-CC--------------CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          181 FLKM-P-FE--------------DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       181 ~~~~-~-~~--------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.+. + +.              ...||+|+..-.=  ..-...+++.+.+   |++.+++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             HHHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEE
Confidence            8763 1 10              1258999885431  1113455555544   67777663

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.73  E-value=1.2e-08  Score=84.95  Aligned_cols=117  Identities=18%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhcCC--CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194          108 RLHEEMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-  184 (359)
Q Consensus       108 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-  184 (359)
                      .+..+.+...+..  -++.++||+-||+|.++.+...+...+|+.+|.++..++..+++.+..+..+++.++..|+... 
T Consensus        26 drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l  105 (183)
T PF03602_consen   26 DRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL  105 (183)
T ss_dssp             HHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred             HHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence            3344444444432  3688999999999999999888755699999999999999999999998877799999996542 


Q ss_pred             C-C--CCCccceEEecccccccCC-HHHHHHHHH--hccCCCCEEEE
Q 018194          185 P-F--EDNHFDGAYSIEATCHAPK-LEDVYAEVF--RVLKPGSLYVS  225 (359)
Q Consensus       185 ~-~--~~~~fD~v~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~l~~  225 (359)
                      . .  ...+||+|++.-.... .. ...++..+.  .+|+++|.+++
T Consensus       106 ~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~  151 (183)
T PF03602_consen  106 LKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIII  151 (183)
T ss_dssp             HHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             HhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEE
Confidence            1 1  4679999998654332 23 377888887  78999998887

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.72  E-value=9.9e-08  Score=88.63  Aligned_cols=99  Identities=18%  Similarity=0.097  Sum_probs=80.8

Q ss_pred             CCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      +.+|||++||+|..+..++...+ .+|+++|+++..++.++++++..++. ++++.++|+..+....+.||+|++.- . 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~-  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F-  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence            46899999999999999987544 48999999999999999999888775 57799999876421146799999853 1 


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        ..+..++....+.++|||.+.+.
T Consensus       135 --Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 --GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --CCcHHHHHHHHHHhcCCCEEEEE
Confidence              34577888878889999999986

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.72  E-value=5e-08  Score=86.42  Aligned_cols=116  Identities=21%  Similarity=0.289  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKM-P  185 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~  185 (359)
                      +..+..+.+..   .+.+|||+-|=||.++...+.....+|+.||.|...++.+++++..+++. .+++++..|+.+. .
T Consensus       112 R~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~  188 (286)
T PF10672_consen  112 RENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK  188 (286)
T ss_dssp             HHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH
T ss_pred             HhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH
Confidence            33344444443   47899999999999999877643248999999999999999999998875 5799999998763 1


Q ss_pred             --CCCCccceEEeccccc------ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 --FEDNHFDGAYSIEATC------HAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~------~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        -..++||+|++.-.-.      -..+...++..+.++|+|||.++++
T Consensus       189 ~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  189 RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              1246899999743211      1125678899999999999998764

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.72  E-value=9e-08  Score=83.23  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---------------------------CCe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD---------------------------SLC  174 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---------------------------~~i  174 (359)
                      .|.++||||||+-..-..-+...-.+|+..|.++.-++..++...+.+-.                           ..|
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            57799999999854432222222248999999998887666554332110                           012


Q ss_pred             -EEEEcCCCCCC-CCC-----CccceEEecccccccC-C---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHH
Q 018194          175 -EVVCGNFLKMP-FED-----NHFDGAYSIEATCHAP-K---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD  243 (359)
Q Consensus       175 -~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  243 (359)
                       .++.+|+.+.+ +..     .+||+|++.+.++... |   ...+++++.++|||||.|++........|......   
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~---  212 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHK---  212 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEE---
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEe---
Confidence             36778887743 322     2599999999988763 3   56899999999999999999765444333221110   


Q ss_pred             HHhhhhcCCCCC-CCCCHHHHHHHHHhCCCeEEEEE
Q 018194          244 IIQGIERGDALP-GLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                                .+ -..+.+.+++.|+++||++++.+
T Consensus       213 ----------F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  213 ----------FPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             ----------EE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ----------cccccCCHHHHHHHHHHcCCEEEecc
Confidence                      11 12467899999999999998877

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.72  E-value=9.3e-08  Score=81.71  Aligned_cols=86  Identities=26%  Similarity=0.337  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.|....++++++.|||||.|||.++..|.+. +.+|+++++++.|+....++........+.+++++|+...++|  
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--  122 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--  122 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--
Confidence            4566778889999999999999999999999985 7899999999999999999988666568899999999988654  


Q ss_pred             ccceEEecc
Q 018194          190 HFDGAYSIE  198 (359)
Q Consensus       190 ~fD~v~~~~  198 (359)
                      .||.++++.
T Consensus       123 ~fd~cVsNl  131 (315)
T KOG0820|consen  123 RFDGCVSNL  131 (315)
T ss_pred             ccceeeccC
Confidence            689998854

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.70  E-value=1.9e-09  Score=87.95  Aligned_cols=147  Identities=14%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~  202 (359)
                      +.++||+|+|.|..+..++... .+|++.+.|..|..+.+++.          +-...+.+..-.+-+||+|.|...+.-
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~----------ynVl~~~ew~~t~~k~dli~clNlLDR  181 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN----------YNVLTEIEWLQTDVKLDLILCLNLLDR  181 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC----------CceeeehhhhhcCceeehHHHHHHHHh
Confidence            4699999999999999998864 38999999999998877641          111112222222446999999999987


Q ss_pred             cCCHHHHHHHHHhccCC-CCEEEEEEeeeCcccccCchHHHHH-HhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          203 APKLEDVYAEVFRVLKP-GSLYVSYEWVTTDKYEAENKEHVDI-IQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       203 ~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ..++-.+|+.++.+|+| .|++++.-..+-..|...+...... -..+....+...-.....+.++|+++||.+.....+
T Consensus       182 c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl  261 (288)
T KOG3987|consen  182 CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL  261 (288)
T ss_pred             hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence            78999999999999999 8988875333322222111100000 000011111100012245678899999998765443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.67  E-value=3.2e-07  Score=84.70  Aligned_cols=115  Identities=15%  Similarity=0.094  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      ....+.+.+.+.+.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.+++++...++. +++++.+|+.+
T Consensus       180 ~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~  256 (353)
T TIGR02143       180 AAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence            3444555666666665433 479999999999999999864 59999999999999999999888874 69999999876


Q ss_pred             CCCC----------C------CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          184 MPFE----------D------NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       184 ~~~~----------~------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..-.          .      ..||+|+..-.  ...-...+++.+.+   |++.+++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEE
Confidence            3210          1      13798887442  11113455555543   77777764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.67  E-value=2.8e-07  Score=81.62  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=83.8

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCccce
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAG--L-DSLCEVVCGNFLKMP-FEDNHFDG  193 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~fD~  193 (359)
                      +..| .+||-||.|.|..++++.++. -.+++.+|+++..++.+++.+....  . .++++++..|..+.- -..++||+
T Consensus        74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            3444 699999999999999999974 3699999999999999999876542  2 368999999987743 22348999


Q ss_pred             EEecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |++...=.--|    .-..+++.+++.|+|+|.++..
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            99865322101    1378999999999999999975

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.67  E-value=2e-08  Score=86.68  Aligned_cols=100  Identities=30%  Similarity=0.496  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..+..++|+|||.|..+.   ..+.+.++|.|++...+..+++.        +. ....+|+..+|+.+.+||.+++..+
T Consensus        44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~d~~lsiav  112 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESFDAALSIAV  112 (293)
T ss_pred             CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCccccchhhhh
Confidence            348899999999996553   23678999999999998887653        23 6788999999999999999999999


Q ss_pred             ccccCC---HHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          200 TCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       200 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      +||+..   ...+++++.|+|+|||...++.|...
T Consensus       113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            999963   67899999999999999999887764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.65  E-value=9.1e-08  Score=85.17  Aligned_cols=89  Identities=21%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--  185 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--  185 (359)
                      +.+.+++.+.+.++..+||++||.|..+..+++..  ..+|+|+|.++.+++.++++...   ..+++++++|+.++.  
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH
Confidence            34567777778889999999999999999999864  47999999999999999988754   358999999998854  


Q ss_pred             CCCC--ccceEEeccccc
Q 018194          186 FEDN--HFDGAYSIEATC  201 (359)
Q Consensus       186 ~~~~--~fD~v~~~~~l~  201 (359)
                      .+.+  ++|.|++.....
T Consensus        84 l~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         84 LAEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HHcCCCccCEEEECCCcc
Confidence            2222  799999876544

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.65  E-value=4.5e-07  Score=74.44  Aligned_cols=124  Identities=22%  Similarity=0.205  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHHhcCC--CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 018194          102 SHRDATRLHEEMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG  179 (359)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~  179 (359)
                      ..+....+..+.+..++..  -.|.++||+-+|+|.++.+.+.+....++.+|.+...+...+++.+..++..++.++..
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            4455556666777777754  57899999999999999999887667999999999999999999999988888999999


Q ss_pred             CCCCC-C-CC-CCccceEEecccccc-cCCHHHHHHH--HHhccCCCCEEEE
Q 018194          180 NFLKM-P-FE-DNHFDGAYSIEATCH-APKLEDVYAE--VFRVLKPGSLYVS  225 (359)
Q Consensus       180 d~~~~-~-~~-~~~fD~v~~~~~l~~-~~~~~~~l~~--~~~~LkpgG~l~~  225 (359)
                      |+... + .. .++||+|+..--... +-+....+..  -..+|+|+|.+++
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~  152 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV  152 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence            99843 1 12 225999999765541 1122334444  4577999999987

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.63  E-value=3.2e-07  Score=76.92  Aligned_cols=105  Identities=24%  Similarity=0.270  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-----FEDNH  190 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~~~  190 (359)
                      .+-.++++||||.=||..+..+|..  .+.+|+++|+++...+.+.+..+..|...+|+++++++.+. +     .+.++
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            3345679999999999988887763  35799999999999999999999999999999999999773 1     34689


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ||+++...   .-.+....+.++.+++|+||.+++-
T Consensus       150 fDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  150 FDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             eeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence            99998753   1124558889999999999999873

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.61  E-value=4.6e-07  Score=81.78  Aligned_cols=114  Identities=23%  Similarity=0.271  Sum_probs=95.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+++..  .+|.+|||.=+|.|.++..+|+....+|+++|++|..++..++++..+++...+..+++|.......-+.+
T Consensus       180 ~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~a  257 (341)
T COG2520         180 ARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVA  257 (341)
T ss_pred             HHHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccC
Confidence            3344443  35899999999999999999997445699999999999999999999998888999999999876544789


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      |.|++...    .+..+++....+.+++||.+..++....
T Consensus       258 DrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         258 DRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             CEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            99998763    3567788889999999999998876554

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.3e-06  Score=82.08  Aligned_cols=131  Identities=22%  Similarity=0.286  Sum_probs=99.5

Q ss_pred             ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194           91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      .+.+.++..........+.+...+.+.+...++.++||+=||.|.++..||+. ..+|+|+|+++.+++.|+++++.+++
T Consensus       262 ~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i  340 (432)
T COG2265         262 SFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI  340 (432)
T ss_pred             EEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC
Confidence            44445544445556777888888999999989999999999999999999975 46999999999999999999999998


Q ss_pred             CCCeEEEEcCCCCCCCC---CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          171 DSLCEVVCGNFLKMPFE---DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       171 ~~~i~~~~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      . |++|..+++++....   ...+|.|+..-.=.-  --..+++.+.+ ++|-..+++.
T Consensus       341 ~-N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVS  395 (432)
T COG2265         341 D-NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVS  395 (432)
T ss_pred             C-cEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEe
Confidence            6 599999999886522   247899987431100  01355555554 6777777774

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.60  E-value=1.9e-07  Score=78.92  Aligned_cols=116  Identities=25%  Similarity=0.329  Sum_probs=73.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCeEEEEc
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNK-------KAGL-DSLCEVVCG  179 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~-------~~~~-~~~i~~~~~  179 (359)
                      .....+++.+.+.+++..+|||||.|......+...+++ .+||++.+...+.|+....       ..+. ..++++.++
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            344556677889999999999999999988888755665 9999999998877765332       2232 346888899


Q ss_pred             CCCCCCCCC---CccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          180 NFLKMPFED---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       180 d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      |+.+.++..   ...|+|+++... .-++....|.+....||||-+++.
T Consensus       109 dfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  109 DFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             -TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             CccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence            987743211   245999998754 234677788888999999988875

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=5.8e-07  Score=73.00  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHH----HHHH-HHHHHcCCCCCeEEEEcCCCCCC
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQV----NRAR-LHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~----~~a~-~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      .++....++++++|+|+=.|.|.+++.++...  ...|+++-..+...    ...+ ..........|++.+-.+...+.
T Consensus        39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~  118 (238)
T COG4798          39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG  118 (238)
T ss_pred             ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence            35667789999999999999999999998853  34777765543311    1000 11111112234555555555544


Q ss_pred             CCCCccceEEecccccc-------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCC
Q 018194          186 FEDNHFDGAYSIEATCH-------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR  258 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (359)
                       +....|+++....-|-       -....++...+++.|||||.+++.|+............             ..+..
T Consensus       119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~-------------~~~ri  184 (238)
T COG4798         119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTI-------------TLHRI  184 (238)
T ss_pred             -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhh-------------hhccc
Confidence             3445666654332221       12467899999999999999999886654322221111             11334


Q ss_pred             CHHHHHHHHHhCCCeEEEEEecCCCC
Q 018194          259 SYAEITEIAKRVGFEVVKEKDLAKPP  284 (359)
Q Consensus       259 ~~~~~~~~l~~aGF~~i~~~~~~~~~  284 (359)
                      +...+.+..+.+||.......+...+
T Consensus       185 ~~a~V~a~veaaGFkl~aeS~ilaNp  210 (238)
T COG4798         185 DPAVVIAEVEAAGFKLEAESEILANP  210 (238)
T ss_pred             ChHHHHHHHHhhcceeeeeehhhcCC
Confidence            67788999999999999887775544

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.59  E-value=5.3e-07  Score=82.23  Aligned_cols=119  Identities=24%  Similarity=0.310  Sum_probs=82.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEc
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--------SRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCG  179 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~  179 (359)
                      ...+.+..++...++.+|+|.+||+|.+...+.++        ...+++|+|+++.++..++.+..-.+... +..+..+
T Consensus        33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~  112 (311)
T PF02384_consen   33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG  112 (311)
T ss_dssp             HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred             HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence            34566777778888889999999999998877652        46799999999999999987765554433 2458888


Q ss_pred             CCCCCCCC--CCccceEEeccccccc--C-------------------CHHHHHHHHHhccCCCCEEEEEE
Q 018194          180 NFLKMPFE--DNHFDGAYSIEATCHA--P-------------------KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       180 d~~~~~~~--~~~fD~v~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |....+..  ...||+|+++-.+...  .                   ....++..+.+.|++||++.++-
T Consensus       113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL  183 (311)
T ss_dssp             -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence            87665432  4789999987544322  0                   01258899999999999987753

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.58  E-value=1.2e-07  Score=82.89  Aligned_cols=106  Identities=22%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCCC-CCCC-ccceEE
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL---DSLCEVVCGNFLKMP-FEDN-HFDGAY  195 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~-~~~~-~fD~v~  195 (359)
                      .+.+||-||.|.|..++++.+++ ..+|+.+|+++..++.+++.+.....   .++++++.+|....- -..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            56799999999999999999875 36999999999999999998765322   368999999986632 2234 899999


Q ss_pred             ecccccccCC----HHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPK----LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....-...+.    -.++++.+.+.|+|||.+++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            8543222121    3689999999999999999743

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.55  E-value=1e-06  Score=78.47  Aligned_cols=139  Identities=14%  Similarity=0.043  Sum_probs=88.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+...++.-...+|||+|||+|..+..+.+. . -.+++++|.|+.|++.++............... .+......+..
T Consensus        23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  101 (274)
T PF09243_consen   23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFP  101 (274)
T ss_pred             HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCC
Confidence            33444444345579999999999866555542 1 258999999999999998876654211111111 11111011122


Q ss_pred             ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ..|+|++.++|..+++  ...+++.+.+.+.+  .++++|......                       +....++++.|
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G-----------------------f~~i~~aR~~l  156 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG-----------------------FRRIAEARDQL  156 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH-----------------------HHHHHHHHHHH
Confidence            3499999999998875  55778888777766  888877544311                       11234677778


Q ss_pred             HhCCCeEEE
Q 018194          268 KRVGFEVVK  276 (359)
Q Consensus       268 ~~aGF~~i~  276 (359)
                      .+.|+.++.
T Consensus       157 ~~~~~~v~A  165 (274)
T PF09243_consen  157 LEKGAHVVA  165 (274)
T ss_pred             hhCCCceEC
Confidence            888888765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.54  E-value=8.6e-07  Score=89.22  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEECCCCChHHHHHHhh-----c-------------------------------------
Q 018194          108 RLHEEMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAH-----S-------------------------------------  144 (359)
Q Consensus       108 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-----~-------------------------------------  144 (359)
                      +.+...++...+. .++..++|.+||+|.+.++.+..     |                                     
T Consensus       175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~  254 (702)
T PRK11783        175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE  254 (702)
T ss_pred             HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence            3444555656565 56789999999999998877541     1                                     


Q ss_pred             -CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEecccccc-c---CCHHHHHHHHHhcc
Q 018194          145 -RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE--DNHFDGAYSIEATCH-A---PKLEDVYAEVFRVL  217 (359)
Q Consensus       145 -~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~L  217 (359)
                       ..+++|+|+++.+++.|++++...|+.+.+++.++|+.+++.+  .++||+|+++--... +   .+...+++.+.+.+
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l  334 (702)
T PRK11783        255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL  334 (702)
T ss_pred             cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence             1369999999999999999999999988899999999887643  357999999854432 1   23444555544444


Q ss_pred             C---CCCEEEEE
Q 018194          218 K---PGSLYVSY  226 (359)
Q Consensus       218 k---pgG~l~~~  226 (359)
                      |   ||+.+++.
T Consensus       335 k~~~~g~~~~ll  346 (702)
T PRK11783        335 KQQFGGWNAALF  346 (702)
T ss_pred             HHhCCCCeEEEE
Confidence            4   88888764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.51  E-value=1.9e-06  Score=72.88  Aligned_cols=123  Identities=16%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             EEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-ccceEEeccccccc
Q 018194          126 ILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN-HFDGAYSIEATCHA  203 (359)
Q Consensus       126 vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~v~~~~~l~~~  203 (359)
                      |.||||-.|.+...|.+... .+++++|+++..++.|++.....++.+++++..+|-.+. ++.+ ..|.|+...+-.. 
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~-   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE-   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence            68999999999999998633 389999999999999999999999999999999996552 2333 3788887665332 


Q ss_pred             CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          204 PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       204 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                       -....|.+....++..-.|++.                             +......++++|.+.||.+++..-+
T Consensus        79 -lI~~ILe~~~~~~~~~~~lILq-----------------------------P~~~~~~LR~~L~~~gf~I~~E~lv  125 (205)
T PF04816_consen   79 -LIIEILEAGPEKLSSAKRLILQ-----------------------------PNTHAYELRRWLYENGFEIIDEDLV  125 (205)
T ss_dssp             -HHHHHHHHTGGGGTT--EEEEE-----------------------------ESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHhhHHHhccCCeEEEe-----------------------------CCCChHHHHHHHHHCCCEEEEeEEE
Confidence             3567777777777776677763                             1123468999999999999887644

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=6.9e-06  Score=75.84  Aligned_cols=116  Identities=23%  Similarity=0.362  Sum_probs=89.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS---RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      ......++..+|.+|||++++.|.=+.++++..   +..|+++|.|+.-++..+++..+.|+. |+.....|....+   
T Consensus       146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~  224 (355)
T COG0144         146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELL  224 (355)
T ss_pred             HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccc
Confidence            445567789999999999999999888888852   456799999999999999999999986 4788888876543   


Q ss_pred             CCCCccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 FEDNHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 ~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ...+.||.|+..-      ++.--|+                ..++|....++|||||.|+....
T Consensus       225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC  289 (355)
T COG0144         225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC  289 (355)
T ss_pred             cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            2223599998632      2211121                34789999999999999997643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.51  E-value=1.8e-07  Score=75.55  Aligned_cols=73  Identities=26%  Similarity=0.514  Sum_probs=55.8

Q ss_pred             EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc-cceEEecc
Q 018194          125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNH-FDGAYSIE  198 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-fD~v~~~~  198 (359)
                      .|+|+.||.|+.+..+|+. ..+|+++|+++..++.++.+++-.|..++|+++++|+.+..  +.... +|+|++.-
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            6999999999999999996 46999999999999999999999999899999999998753  22222 79998753

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.50  E-value=2.2e-06  Score=69.96  Aligned_cols=102  Identities=30%  Similarity=0.435  Sum_probs=74.4

Q ss_pred             EEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CccceEEecccc
Q 018194          126 ILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFED-NHFDGAYSIEAT  200 (359)
Q Consensus       126 vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~fD~v~~~~~l  200 (359)
                      ++|+|||+|... .++....  ..++++|+++.++..++..... .....+.+...|...  .++.. ..||++ +....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence            999999999976 3333222  4899999999999985554432 111116888888876  67766 489999 55544


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      .+..+....+.++.+.++|+|.+++.....
T Consensus       129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         129 LHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             hhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            444348899999999999999999876544

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.48  E-value=4.2e-07  Score=75.26  Aligned_cols=98  Identities=23%  Similarity=0.372  Sum_probs=71.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~  197 (359)
                      ....|+|.-||.|+.+...+.. ++.|+++|++|.-+..|+.+++-.|++++|+|+++|+.++-    +....+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            3458999999999999888885 67999999999999999999999999999999999998742    333345566654


Q ss_pred             ccccccCCHHHHHHHHHhccCCC
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPG  220 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~Lkpg  220 (359)
                      .....-.-...-+-.+...++|.
T Consensus       173 ppwggp~y~~~~~~DL~~~~~p~  195 (263)
T KOG2730|consen  173 PPWGGPSYLRADVYDLETHLKPM  195 (263)
T ss_pred             CCCCCcchhhhhhhhhhhhcchh
Confidence            43322212233334444455554

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.47  E-value=3.5e-06  Score=76.09  Aligned_cols=121  Identities=9%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEE
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLD-SLCEVV  177 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~  177 (359)
                      ....+.+...|+..++  ++..++|+|||.|.=+..|.+.     ....++++|+|..+++.+.++......+ -.+.-+
T Consensus        60 ~~iL~~~~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l  137 (319)
T TIGR03439        60 IEILKKHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGL  137 (319)
T ss_pred             HHHHHHHHHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEE
Confidence            4445556666776654  5679999999999977666542     2468999999999999999988733333 234448


Q ss_pred             EcCCCCC----CC--CCCccceEEecc-cccccC--CHHHHHHHHHh-ccCCCCEEEEE
Q 018194          178 CGNFLKM----PF--EDNHFDGAYSIE-ATCHAP--KLEDVYAEVFR-VLKPGSLYVSY  226 (359)
Q Consensus       178 ~~d~~~~----~~--~~~~fD~v~~~~-~l~~~~--~~~~~l~~~~~-~LkpgG~l~~~  226 (359)
                      ++|+.+.    +-  ......+++... ++.+++  +...+|+++++ .|+|||.+++.
T Consensus       138 ~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       138 LGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             EecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            8888662    11  123456666554 777775  35589999999 99999998873

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.45  E-value=1.3e-06  Score=80.69  Aligned_cols=91  Identities=30%  Similarity=0.434  Sum_probs=67.8

Q ss_pred             ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194           91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      .+.+++...........+.+.+.++++++..++ +|||+-||.|.++..+|+.. .+|+|+|+++.+++.|++++...++
T Consensus       166 ~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i  243 (352)
T PF05958_consen  166 SFRISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGI  243 (352)
T ss_dssp             EEEEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred             EEEECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCC
Confidence            345555544455566777888888999987766 89999999999999999964 5999999999999999999999887


Q ss_pred             CCCeEEEEcCCCCC
Q 018194          171 DSLCEVVCGNFLKM  184 (359)
Q Consensus       171 ~~~i~~~~~d~~~~  184 (359)
                      . |++|+.+++.+.
T Consensus       244 ~-n~~f~~~~~~~~  256 (352)
T PF05958_consen  244 D-NVEFIRGDAEDF  256 (352)
T ss_dssp             --SEEEEE--SHHC
T ss_pred             C-cceEEEeeccch
Confidence            5 899999887653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.44  E-value=3.4e-06  Score=75.17  Aligned_cols=177  Identities=17%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             HHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHH
Q 018194           83 IYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNR  160 (359)
Q Consensus        83 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~  160 (359)
                      .|+..++.+..|+.+.       ..+.+...+...+. ++...+||-+|.|.|...+++.++|+ .+|+-+|++|.|++.
T Consensus       256 d~rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miel  328 (508)
T COG4262         256 DLRLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIEL  328 (508)
T ss_pred             ceEEEEcCceeeeech-------hhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHH
Confidence            3444556666666432       22223222222222 33456999999999999999999885 599999999999999


Q ss_pred             HHHH--HHHcC----CCCCeEEEEcCCCCCC-CCCCccceEEecccccccCC-----HHHHHHHHHhccCCCCEEEEEEe
Q 018194          161 ARLH--NKKAG----LDSLCEVVCGNFLKMP-FEDNHFDGAYSIEATCHAPK-----LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       161 a~~~--~~~~~----~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ++..  ....+    .+++++++..|+.++- -..+.||.|+....=..-+.     -.++..-+.+.|+++|.+++.. 
T Consensus       329 a~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa-  407 (508)
T COG4262         329 ASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA-  407 (508)
T ss_pred             hhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec-
Confidence            9833  22211    2468899999988753 23468999988542111111     2578889999999999999842 


Q ss_pred             eeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhh
Q 018194          229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWT  290 (359)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~  290 (359)
                        .+.|....                 .++   .+.+.+++|||.+.-.+.. .+.+..|--
T Consensus       408 --gs~y~tp~-----------------vfw---~i~aTik~AG~~~~Pyhv~-VPTFGeWGf  446 (508)
T COG4262         408 --GSPYFTPR-----------------VFW---RIDATIKSAGYRVWPYHVH-VPTFGEWGF  446 (508)
T ss_pred             --CCCccCCc-----------------eee---eehhHHHhCcceeeeeEEe-cCcccccce
Confidence              11111110                 111   3557789999988776655 344556643

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.40  E-value=2e-06  Score=68.79  Aligned_cols=100  Identities=23%  Similarity=0.289  Sum_probs=72.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHh-----hcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAA-----HSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      ..+..+|+|+|||.|.++..++.     .++.+|+++|.++..++.+.++....+  +..++++..++..+... ....+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            36778999999999999999998     677899999999999999999988876  44567777776654322 45567


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +++..++-..+  -..+|+.+.+   |+-.+++
T Consensus       102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~  129 (141)
T PF13679_consen  102 ILVGLHACGDL--SDRALRLFIR---PNARFLV  129 (141)
T ss_pred             EEEEeecccch--HHHHHHHHHH---cCCCEEE
Confidence            77765543322  2344555444   5555444

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.38  E-value=1.9e-05  Score=66.41  Aligned_cols=140  Identities=16%  Similarity=0.162  Sum_probs=89.1

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f  191 (359)
                      .+++.+|.+||-+|..+|....+++.-  +...|++++.|+...+..-..+++.   .||-.+..|+....   .--+..
T Consensus        68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--E
T ss_pred             ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccc
Confidence            457889999999999999999999884  3569999999996655544444432   58999999998632   112578


Q ss_pred             ceEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          192 DGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       192 D~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      |+|++.-+   .|+ ..-++.++...||+||.+++.--...  .+.......                ...+-.+.|++.
T Consensus       145 DvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--iD~t~~p~~----------------vf~~e~~~L~~~  203 (229)
T PF01269_consen  145 DVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARS--IDSTADPEE----------------VFAEEVKKLKEE  203 (229)
T ss_dssp             EEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHH--H-SSSSHHH----------------HHHHHHHHHHCT
T ss_pred             cEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCc--ccCcCCHHH----------------HHHHHHHHHHHc
Confidence            99998654   234 45677888899999999988521111  111000000                012445678889


Q ss_pred             CCeEEEEEec
Q 018194          271 GFEVVKEKDL  280 (359)
Q Consensus       271 GF~~i~~~~~  280 (359)
                      ||++++.-++
T Consensus       204 ~~~~~e~i~L  213 (229)
T PF01269_consen  204 GFKPLEQITL  213 (229)
T ss_dssp             TCEEEEEEE-
T ss_pred             CCChheEecc
Confidence            9999998877

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.36  E-value=2.8e-07  Score=77.13  Aligned_cols=93  Identities=19%  Similarity=0.269  Sum_probs=60.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CC--CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FE--DN  189 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~  189 (359)
                      .+.+|||+||++|.|+..+.++.  ..+|+|+|+.+..           . ..++.++++|+.+..        +.  ..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeecccchhhHHHhhhhhcccccc
Confidence            34899999999999999999865  4799999998761           1 134666677765421        11  26


Q ss_pred             ccceEEecccccccC----C-------HHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAP----K-------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|++..+.....    |       ....+.-+...|+|||.+++-
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            899999987433221    1       234555566789999998874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=6.4e-07  Score=83.40  Aligned_cols=101  Identities=23%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             HHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHH
Q 018194           82 DIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA  161 (359)
Q Consensus        82 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a  161 (359)
                      -.++...+-.|.+++.-.........+.+...+-++++++.+..+||+.||||.++..+++.. .+|+|++++++.++.|
T Consensus       343 ~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA  421 (534)
T KOG2187|consen  343 YITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDA  421 (534)
T ss_pred             EEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchh
Confidence            456777788888888766666677778888899999999999999999999999999999864 5999999999999999


Q ss_pred             HHHHHHcCCCCCeEEEEcCCCCC
Q 018194          162 RLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       162 ~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      +.++...|+. |++|+++-++++
T Consensus       422 ~~nA~~Ngis-Na~Fi~gqaE~~  443 (534)
T KOG2187|consen  422 EKNAQINGIS-NATFIVGQAEDL  443 (534)
T ss_pred             hhcchhcCcc-ceeeeecchhhc
Confidence            9999988875 899999977663

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.34  E-value=4.2e-06  Score=74.23  Aligned_cols=105  Identities=19%  Similarity=0.268  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+.+.++..|||||+|+|.++..|++.. .+++++|+++.+++..+++..   ..++++++.+|+.++..+
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence            4566778888888899999999999999999999975 799999999999999988765   246899999999998754


Q ss_pred             C---CccceEEecccccccCCHHHHHHHHHhccCC
Q 018194          188 D---NHFDGAYSIEATCHAPKLEDVYAEVFRVLKP  219 (359)
Q Consensus       188 ~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp  219 (359)
                      .   +....|+++... +  --..++.++...-+.
T Consensus        92 ~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~  123 (262)
T PF00398_consen   92 DLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF  123 (262)
T ss_dssp             GHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred             HhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence            3   344566665332 2  234566666663333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.32  E-value=3.7e-06  Score=76.54  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cC----------------------------C-------
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SR----------------------------A-------  146 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~----------------------------~-------  146 (359)
                      .+.+...++.+.+-.++..++|-=||+|.+.++.|..     ||                            +       
T Consensus       176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~  255 (381)
T COG0116         176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP  255 (381)
T ss_pred             hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence            3455566777778888889999999999999887753     11                            1       


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-cCC---HH----HHHHHHHhccC
Q 018194          147 NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-APK---LE----DVYAEVFRVLK  218 (359)
Q Consensus       147 ~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~~---~~----~~l~~~~~~Lk  218 (359)
                      .++|+|+++.+++.|+.++...|+.+.|+|.++|+..++-+-+.+|+|+|+-.-.- +.+   ..    .+.+.+++.++
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~  335 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA  335 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence            37799999999999999999999999999999999988644478999999864321 111   22    34445556666


Q ss_pred             CCCEEEEE
Q 018194          219 PGSLYVSY  226 (359)
Q Consensus       219 pgG~l~~~  226 (359)
                      --+..+++
T Consensus       336 ~ws~~v~t  343 (381)
T COG0116         336 GWSRYVFT  343 (381)
T ss_pred             CCceEEEE
Confidence            66676663

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.25  E-value=1.1e-05  Score=74.69  Aligned_cols=100  Identities=12%  Similarity=-0.004  Sum_probs=82.0

Q ss_pred             CCEEEEECCCCChHHHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEeccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHS-R-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAYSIEA  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~  199 (359)
                      +.+|||+.||+|..+..++... + .+|+++|+++..++.++++.+..++. ++++.+.|+..+- .....||+|...- 
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence            4689999999999999998862 3 59999999999999999999887664 6889999987642 1235799998854 


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .   ..+..++..+.+.+++||.+.++.
T Consensus       123 f---Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 F---GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence            2   355689999999999999999863

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.25  E-value=1.1e-05  Score=66.90  Aligned_cols=104  Identities=23%  Similarity=0.311  Sum_probs=85.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIE  198 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~  198 (359)
                      ..|.+||+||-|-|.....+.+.+..+-+.++..|..+++.+...-.  -.+||-...+-.++.  .++++.||.|+..-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec
Confidence            56889999999999999998887666778899999999887665322  246788888887773  27789999999876


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      --.+..|...+.+.+.|+|||+|++-..
T Consensus       178 y~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  178 YSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            6577788999999999999999999764

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.5e-05  Score=66.60  Aligned_cols=97  Identities=23%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FEDN  189 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  189 (359)
                      +.++++|+|||+-.|.|+..+++..+  ..|+++|+.|--            ..+++.++++|+..-+        +...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCC
Confidence            46789999999999999999998644  359999997642            1246999999998754        3445


Q ss_pred             ccceEEecccc--------cccCC---HHHHHHHHHhccCCCCEEEEEEe
Q 018194          190 HFDGAYSIEAT--------CHAPK---LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       190 ~fD~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      .+|+|++..+-        .|...   -..++.-+..+|+|||.+++-.+
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            57999976543        22111   23566667789999999998543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=1.7e-06  Score=68.23  Aligned_cols=144  Identities=19%  Similarity=0.177  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCC-ChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGV-GGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKA---GLDSLCEVVCGNFLKM  184 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~  184 (359)
                      +.-.+++....-.|.+||++|.|- |..+..+|.. +...|...|-++..++..++.....   ++ ..+.....+....
T Consensus        17 la~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~-tsc~vlrw~~~~a   95 (201)
T KOG3201|consen   17 LAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL-TSCCVLRWLIWGA   95 (201)
T ss_pred             HHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc-ceehhhHHHHhhh
Confidence            334444444445678999999995 5555555653 5679999999999998877654332   11 1222222222221


Q ss_pred             --CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194          185 --PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       185 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                        .....+||.|++...+..-.....+++.+.++|+|.|.-++...-                          .-.+.+.
T Consensus        96 qsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR--------------------------Rg~sL~k  149 (201)
T KOG3201|consen   96 QSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR--------------------------RGQSLQK  149 (201)
T ss_pred             HHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc--------------------------ccchHHH
Confidence              123468999999988766556778999999999999996663110                          1124567


Q ss_pred             HHHHHHhCCCeEEEEEec
Q 018194          263 ITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~  280 (359)
                      +.+.....||.++-.+++
T Consensus       150 F~de~~~~gf~v~l~eny  167 (201)
T KOG3201|consen  150 FLDEVGTVGFTVCLEENY  167 (201)
T ss_pred             HHHHHHhceeEEEecccH
Confidence            778888999999877666

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.21  E-value=7.5e-06  Score=66.89  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+++...-..-.|++|||+|+|+|..++..++.....|+..|+.|......+-+.+.++.  ++.+...|...   .+..
T Consensus        68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~  142 (218)
T COG3897          68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPA  142 (218)
T ss_pred             HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcc
Confidence            344555555567899999999999999888886556999999999988888887777764  48888888865   4578


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCC-EEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSY  226 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~~  226 (359)
                      ||+++...++..-+.-..++. +.+.|+..| .+++.
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg  178 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG  178 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence            999999998876666667777 555555444 55543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.18  E-value=3e-05  Score=68.27  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             CCEEEEECCCCCh-HHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          123 GDRILDVGCGVGG-PMRAIAAH--SRANVVGITINEYQVNRARLHNK-KAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       123 ~~~vLDiGcG~G~-~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      +.+|+=||||.=- .+..+++.  .+..|+++|+++..++.+++... ..++..+++|+.+|..+.+..-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            4599999999754 44556653  45789999999999999999877 55677889999999987665456899998766


Q ss_pred             ccc-ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          199 ATC-HAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       199 ~l~-~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ... .-.+..++|.++.+.++||..+++-
T Consensus       201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  201 LVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            443 2237899999999999999988873

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=0.00022  Score=58.81  Aligned_cols=140  Identities=17%  Similarity=0.174  Sum_probs=96.3

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFD  192 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD  192 (359)
                      .+++.+|.+||=+|+-+|....+++.-.+ ..+++++.|+.+....-..+.+.   +|+-.+..|+....   .--+..|
T Consensus        71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhccccc
Confidence            45788999999999999999999998533 68999999998877666655553   57888999997632   1124689


Q ss_pred             eEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          193 GAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       193 ~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      +|+..-+   .|+ ..-+..++...||+||.+++.--..+-........   +               ..+-.+.|++.|
T Consensus       148 viy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~---v---------------f~~ev~kL~~~~  206 (231)
T COG1889         148 VIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE---V---------------FKDEVEKLEEGG  206 (231)
T ss_pred             EEEEecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH---H---------------HHHHHHHHHhcC
Confidence            9887543   244 34566788999999998877432211110000000   0               123445688899


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |++++.-++
T Consensus       207 f~i~e~~~L  215 (231)
T COG1889         207 FEILEVVDL  215 (231)
T ss_pred             ceeeEEecc
Confidence            999998777

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.11  E-value=3.8e-05  Score=69.00  Aligned_cols=88  Identities=16%  Similarity=0.087  Sum_probs=67.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      +.+|+++|||||++|.++..+.+. |.+|++||.++ |-...    .   -.++|.....|......+.+.+|.++|..+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~L----~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQSL----M---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHhh----h---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            468999999999999999999996 67999999654 21111    1   135788888888765433678999999764


Q ss_pred             ccccCCHHHHHHHHHhccCCC
Q 018194          200 TCHAPKLEDVYAEVFRVLKPG  220 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~Lkpg  220 (359)
                          ..+..+.+-+.+.|..|
T Consensus       280 ----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        280 ----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ----cCHHHHHHHHHHHHhcC
Confidence                46778888888888776

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=6.4e-05  Score=65.91  Aligned_cols=146  Identities=18%  Similarity=0.272  Sum_probs=91.9

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH---HHcC------------------------------
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN---KKAG------------------------------  169 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~------------------------------  169 (359)
                      ..+||--|||.|+++..|+.. |..+-|-+.|--|+-...=..   ...+                              
T Consensus       151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            458999999999999999984 556667787777653221111   0000                              


Q ss_pred             ------CCCCeEEEEcCCCCCC---CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee---CcccccC
Q 018194          170 ------LDSLCEVVCGNFLKMP---FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT---TDKYEAE  237 (359)
Q Consensus       170 ------~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~  237 (359)
                            ..+..+...||+.+.-   -..+.||+|+.++.+....+.-+.|+.+..+|||||+.+=.....   .+.... 
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-  308 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-  308 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-
Confidence                  0011122234444321   112479999998888877889999999999999999987422111   000000 


Q ss_pred             chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194          238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP  283 (359)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~  283 (359)
                                   .....--.+.+++..+.+.-||++++.+.+...
T Consensus       309 -------------~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~  341 (369)
T KOG2798|consen  309 -------------ENEMSIELSLEDLKRVASHRGFEVEKERGIDTT  341 (369)
T ss_pred             -------------cccccccccHHHHHHHHHhcCcEEEEeeeeecc
Confidence                         000111246789999999999999998876443

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=98.08  E-value=0.00089  Score=61.92  Aligned_cols=159  Identities=16%  Similarity=0.126  Sum_probs=86.9

Q ss_pred             CCEEEEECCCCChHHHHHHh--------h--------cCCEEEEEeCCHHHHHHHHHHHHH--------------cCCC-
Q 018194          123 GDRILDVGCGVGGPMRAIAA--------H--------SRANVVGITINEYQVNRARLHNKK--------------AGLD-  171 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~--------------~~~~-  171 (359)
                      ..+|+|+|||+|..+..+..        +        +..+|..-|+-.+-....-+....              .+.. 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            56999999999987654421        1        235777777643221111111100              0000 


Q ss_pred             CCeEEEEcCCCCCCCCCCccceEEecccccccCC--------------------------------------HHHHHHHH
Q 018194          172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--------------------------------------LEDVYAEV  213 (359)
Q Consensus       172 ~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~  213 (359)
                      --+.-+.+.+..--||.++.+++++..++||+..                                      +..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0012223444444488999999999999998752                                      11233444


Q ss_pred             HhccCCCCEEEEEEeeeCcccccCch---H-----HHHHHhhhhc-C---------CCCC-CCCCHHHHHHHHHhCC-Ce
Q 018194          214 FRVLKPGSLYVSYEWVTTDKYEAENK---E-----HVDIIQGIER-G---------DALP-GLRSYAEITEIAKRVG-FE  273 (359)
Q Consensus       214 ~~~LkpgG~l~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~-~---------~~~~-~~~~~~~~~~~l~~aG-F~  273 (359)
                      .+-|.|||++++.-............   .     ....+..... |         ..+| ...+.+|+++.+++.| |+
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            56689999999976555321111110   0     1111111111 1         1122 3568899999999888 77


Q ss_pred             EEEEEecC
Q 018194          274 VVKEKDLA  281 (359)
Q Consensus       274 ~i~~~~~~  281 (359)
                      +.+.+.+.
T Consensus       304 I~~le~~~  311 (386)
T PLN02668        304 IDKLEVFK  311 (386)
T ss_pred             eeeeEEee
Confidence            76666553

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.06  E-value=3.2e-05  Score=69.25  Aligned_cols=114  Identities=20%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCC
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FED  188 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  188 (359)
                      .....+...++.+|||++++.|.=+..+++..  ...|++.|+++..+...+++..+.|.. ++.....|.....  ...
T Consensus        76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~  154 (283)
T PF01189_consen   76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPE  154 (283)
T ss_dssp             HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHT
T ss_pred             cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccc
Confidence            34455678899999999999999998888843  369999999999999999999999875 6777777776541  223


Q ss_pred             CccceEEecc------cccccCC----------------HHHHHHHHHhcc----CCCCEEEEEE
Q 018194          189 NHFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVL----KPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L----kpgG~l~~~~  227 (359)
                      ..||.|+...      ++..-|+                ..++|+++.+.+    ||||+++...
T Consensus       155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            4699998632      2222222                247899999999    9999999764

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.04  E-value=6.6e-05  Score=73.51  Aligned_cols=78  Identities=19%  Similarity=0.128  Sum_probs=55.5

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS---------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~  187 (359)
                      .+.+|||.|||+|.+...++...         ...++|+|+++..+..++.+....+ ...+.+...|.....     -.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccccccc
Confidence            45699999999999998887632         2578999999999999998877654 123455555543321     11


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      .+.||+|+++--.
T Consensus       110 ~~~fD~IIgNPPy  122 (524)
T TIGR02987       110 LDLFDIVITNPPY  122 (524)
T ss_pred             cCcccEEEeCCCc
Confidence            2579999987543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.01  E-value=1.2e-06  Score=66.39  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             EEECCCCChHHHHHHhh--cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEecccc
Q 018194          127 LDVGCGVGGPMRAIAAH--SR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIEAT  200 (359)
Q Consensus       127 LDiGcG~G~~~~~l~~~--~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l  200 (359)
                      ||||+..|..+..+++.  ..  .+++++|+.+. .+..++..++.++..+++++.++..+.  .++.++||+++.-.. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence            68999999998888763  22  37999999985 334444444456667899999999763  133578999998653 


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |..+.....+..+.+.|+|||.+++-+
T Consensus        79 H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   79 HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            223456678899999999999998754

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.93  E-value=4.2e-05  Score=62.03  Aligned_cols=98  Identities=20%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-  202 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-  202 (359)
                      +.+.|+|+|+|.++...++. .-+|++++.+|...+.|+++..-.|. .|++++.+|+.+..|  ...|+|+|-..=.. 
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL  109 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL  109 (252)
T ss_pred             hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence            68999999999999877775 46999999999999999988755554 589999999999887  45699988542111 


Q ss_pred             -cCCHHHHHHHHHhccCCCCEEEE
Q 018194          203 -APKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       203 -~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                       ......+++.+...||-.+.++=
T Consensus       110 i~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         110 IEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hcccccHHHHHHHHHhhcCCcccc
Confidence             12456788888889999998874

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.93  E-value=0.00091  Score=61.30  Aligned_cols=161  Identities=18%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-----------------cCCEEEEEeCCHHHH-------HHHHHHHHHcCCCCCeE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-----------------SRANVVGITINEYQV-------NRARLHNKKAGLDSLCE  175 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~g~D~s~~~~-------~~a~~~~~~~~~~~~i~  175 (359)
                      .....+|+|+||.+|..+..+...                 +..+|+--|+-.+=.       ....+.... ..+--+.
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEE
Confidence            344579999999999988765421                 114788888632211       111111111 1111133


Q ss_pred             EEEcCCCCCCCCCCccceEEecccccccCCH---------------------------------------HHHHHHHHhc
Q 018194          176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKL---------------------------------------EDVYAEVFRV  216 (359)
Q Consensus       176 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------------~~~l~~~~~~  216 (359)
                      -+.+.+..--+|.++.|++++..++||+...                                       ..+|+.=.+-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            4456776656899999999999999987310                                       1233333456


Q ss_pred             cCCCCEEEEEEeeeCcccccC--c----hHHHHHHhhhhcCCC----------CC-CCCCHHHHHHHHHhCC-CeEEEEE
Q 018194          217 LKPGSLYVSYEWVTTDKYEAE--N----KEHVDIIQGIERGDA----------LP-GLRSYAEITEIAKRVG-FEVVKEK  278 (359)
Q Consensus       217 LkpgG~l~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~l~~aG-F~~i~~~  278 (359)
                      |+|||++++.-....+.....  .    ......+..+...+.          +| ..++.+++++.+++.| |++...+
T Consensus       173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le  252 (334)
T PF03492_consen  173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE  252 (334)
T ss_dssp             EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred             eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence            899999999766554411111  1    112222222211111          12 2568899999998777 8776666


Q ss_pred             ecC
Q 018194          279 DLA  281 (359)
Q Consensus       279 ~~~  281 (359)
                      .+.
T Consensus       253 ~~~  255 (334)
T PF03492_consen  253 LFE  255 (334)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.92  E-value=0.00032  Score=58.86  Aligned_cols=128  Identities=17%  Similarity=0.083  Sum_probs=93.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .+.++.||||-.+.+...+.+. +...+++.|+++..++.|.+.+.+.++.++++...+|-...--++..+|.|+...+-
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG   95 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG   95 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence            3556999999999999999884 556999999999999999999999999999999999985532344579998877653


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ..  -....|.+-.+.|+.=-++++.                             +-....+++++|.+.+|+++...-+
T Consensus        96 G~--lI~~ILee~~~~l~~~~rlILQ-----------------------------Pn~~~~~LR~~L~~~~~~I~~E~il  144 (226)
T COG2384          96 GT--LIREILEEGKEKLKGVERLILQ-----------------------------PNIHTYELREWLSANSYEIKAETIL  144 (226)
T ss_pred             HH--HHHHHHHHhhhhhcCcceEEEC-----------------------------CCCCHHHHHHHHHhCCceeeeeeee
Confidence            32  2456666666666543355541                             1113457888888888887765433

>PRK10742 putative methyltransferase; Provisional

Probab=97.83  E-value=0.00013  Score=62.94  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             HHHHHhcCCCCCC--EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEEEEcCC
Q 018194          112 EMAVDLIDVKAGD--RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA------G--LDSLCEVVCGNF  181 (359)
Q Consensus       112 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~--~~~~i~~~~~d~  181 (359)
                      +.+++.++++++.  +|||+-+|+|..+..++.. |++|+++|-++......+......      +  +..+++++++|.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            6688888888888  9999999999999999986 789999999999988887777663      2  224688888888


Q ss_pred             CCCC-CCCCccceEEecccccc
Q 018194          182 LKMP-FEDNHFDGAYSIEATCH  202 (359)
Q Consensus       182 ~~~~-~~~~~fD~v~~~~~l~~  202 (359)
                      .+.- -...+||+|+.--.+.|
T Consensus       155 ~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        155 LTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHhhCCCCCcEEEECCCCCC
Confidence            6642 12247999998776655

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.82  E-value=0.00013  Score=65.21  Aligned_cols=90  Identities=17%  Similarity=0.233  Sum_probs=73.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      +.+.+++.+.+.++..++|.-+|.|..+..+++. ++++|+|+|.++.+++.++++....  ..+++++++++.++.   
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence            4466777788888999999999999999999885 3479999999999999999987654  357999999998753   


Q ss_pred             --CCCCccceEEeccccc
Q 018194          186 --FEDNHFDGAYSIEATC  201 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~  201 (359)
                        ...+++|.|+....+.
T Consensus        86 ~~~~~~~vDgIl~DLGvS  103 (305)
T TIGR00006        86 DELLVTKIDGILVDLGVS  103 (305)
T ss_pred             HhcCCCcccEEEEeccCC
Confidence              2335799998876554

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00034  Score=65.44  Aligned_cols=103  Identities=23%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  203 (359)
                      .++|-+|||.-.++..+-+.....|+.+|+|+..++....+....  .+...+...|+..+.|++++||+|+....+.++
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal  127 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL  127 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCccccc
Confidence            499999999999998888754569999999999998887766422  345899999999999999999999999888876


Q ss_pred             C-C---------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          204 P-K---------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       204 ~-~---------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      - +         ....+.+++|+|+|||+++.+..
T Consensus       128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            2 1         23567899999999999887655

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.75  E-value=0.00011  Score=58.78  Aligned_cols=58  Identities=14%  Similarity=0.110  Sum_probs=49.4

Q ss_pred             EEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          125 RILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      .+||+|||.|..+..+++. ++.+|+++|+++.+.+.++++++..+++ ++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            4899999999999998875 4458999999999999999998877764 58888877765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.75  E-value=0.00012  Score=57.38  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=74.2

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecccccccC--C---------HHHHHHHH
Q 018194          147 NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHAP--K---------LEDVYAEV  213 (359)
Q Consensus       147 ~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~--~---------~~~~l~~~  213 (359)
                      +|+|+|+-+..++..+++..+.++.++++++..+=+.+.  .+.+++|+++.+.  .++|  |         -..+++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            689999999999999999999998889999998877764  2335799987654  4554  2         34788999


Q ss_pred             HhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          214 FRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       214 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                      .++|+|||.+.++.+...+.-.   .+..                ...++.+-|...-|.+.....+..
T Consensus        79 l~lL~~gG~i~iv~Y~GH~gG~---eE~~----------------av~~~~~~L~~~~~~V~~~~~~N~  128 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPGGK---EESE----------------AVEEFLASLDQKEFNVLKYQFINQ  128 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCHHH---HHHH----------------HHHHHHHTS-TTTEEEEEEEESS-
T ss_pred             HHhhccCCEEEEEEeCCCCCCH---HHHH----------------HHHHHHHhCCcceEEEEEEEccCC
Confidence            9999999999987543321110   1111                112444445566788888777643

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.75  E-value=0.00049  Score=59.20  Aligned_cols=81  Identities=17%  Similarity=0.204  Sum_probs=59.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      .+..+|+|||||.=-++..+.. .++..++|+||+..+++.........+.+  .++...|...-+ +....|+.+..=+
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~~~~DlaLllK~  180 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PKEPADLALLLKT  180 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CCCCcchhhHHHH
Confidence            3467999999999888776655 45689999999999999999998887754  677788887653 4577899998877


Q ss_pred             ccccC
Q 018194          200 TCHAP  204 (359)
Q Consensus       200 l~~~~  204 (359)
                      ++.+.
T Consensus       181 lp~le  185 (251)
T PF07091_consen  181 LPCLE  185 (251)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76664

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.0015  Score=55.54  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=90.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~  197 (359)
                      .++..+||+|+-||.++..+.++...+|+++|..-.++..--+.     -+.-+.+...|+..+.   +. +..|++++.
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D  151 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFT-EKPDLIVID  151 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence            36789999999999999999997557999999998877653221     1222344555665543   32 367899887


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC----CCCCHHHHHHHHHhCCCe
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP----GLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~aGF~  273 (359)
                      -++.   ....+|..+..+++|++-++..-   .+.+.    .-   ...+..+.-..    +..-...+.+++++.||.
T Consensus       152 vSFI---SL~~iLp~l~~l~~~~~~~v~Lv---KPQFE----ag---r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~  218 (245)
T COG1189         152 VSFI---SLKLILPALLLLLKDGGDLVLLV---KPQFE----AG---REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQ  218 (245)
T ss_pred             eehh---hHHHHHHHHHHhcCCCceEEEEe---cchhh----hh---hhhcCcCceecCcchHHHHHHHHHHHHhhcCcE
Confidence            6643   56788999999999999887631   11111    10   01111111111    112346788899999999


Q ss_pred             EEEEEe
Q 018194          274 VVKEKD  279 (359)
Q Consensus       274 ~i~~~~  279 (359)
                      +.....
T Consensus       219 ~~gl~~  224 (245)
T COG1189         219 VKGLIK  224 (245)
T ss_pred             EeeeEc
Confidence            987643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.64  E-value=0.00071  Score=61.28  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCccce
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-FLKMPFEDNHFDG  193 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD~  193 (359)
                      +...++||.+|+=+|+| .|..+..+|+..+++|+++|.|++-++.|++.-+       -.++... ......-.+.||+
T Consensus       160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~  232 (339)
T COG1064         160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADA  232 (339)
T ss_pred             hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcE
Confidence            34678899999999998 3457888888778999999999999999887632       2344432 2111111134899


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      |+..-.       ...+....+.|++||+++++-..
T Consensus       233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence            887543       55677888999999999987544

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=2.3e-05  Score=61.44  Aligned_cols=52  Identities=27%  Similarity=0.378  Sum_probs=42.4

Q ss_pred             EEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       175 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++++-.....+|.+++.|+|++.++++|+.  .-..+++++++.|||||++-+.
T Consensus        32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            333333334578899999999999999986  5678999999999999999885

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.58  E-value=0.00095  Score=59.45  Aligned_cols=81  Identities=17%  Similarity=0.128  Sum_probs=50.3

Q ss_pred             CCEEEEECCCCChHHHHHH-hhcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-----CCCCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLK-----MPFEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~-----~~~~~~~fD~v~  195 (359)
                      ..++||||||....-..|+ +..+.+++|.|+++..++.|++..+.. ++..+|+++...-..     +..+.+.||+..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            4689999999886544444 346899999999999999999999998 898999998664322     112346899999


Q ss_pred             eccccccc
Q 018194          196 SIEATCHA  203 (359)
Q Consensus       196 ~~~~l~~~  203 (359)
                      |+--++.-
T Consensus       183 CNPPFy~s  190 (299)
T PF05971_consen  183 CNPPFYSS  190 (299)
T ss_dssp             E-----SS
T ss_pred             cCCccccC
Confidence            98776643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.54  E-value=0.00075  Score=61.79  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~f  191 (359)
                      .+..++|.||||.++-.|.=+.++|..  -...|++.|.+...+...+.++.+.|.. +.-....|...+|   ++. +|
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~f  313 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SF  313 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cc
Confidence            456789999999999999988888763  2359999999999999999999999975 6677788887654   444 89


Q ss_pred             ceEEecc------ccc------ccC----------CHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          192 DGAYSIE------ATC------HAP----------KLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       192 D~v~~~~------~l~------~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      |-|+...      ++.      ...          -..++|-....+++|||+|+......
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            9997432      111      111          13478888899999999998765433

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=0.00088  Score=54.51  Aligned_cols=99  Identities=15%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC--------CCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMP--------FED  188 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~  188 (359)
                      +.|+.+|||+||..|.|+.-..+.  |...|.|+|+-.-.           . ++-+.++++ |+.+..        +|+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------P-PEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------C-CCCcccccccccCCHHHHHHHHHhCCC
Confidence            467999999999999999877664  66899999984321           1 122455555 666531        466


Q ss_pred             CccceEEecccccc----cCCHHH-------HHHHHHhccCCCCEEEEEEeee
Q 018194          189 NHFDGAYSIEATCH----APKLED-------VYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       189 ~~fD~v~~~~~l~~----~~~~~~-------~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      ...|+|++...-..    +.|...       ++.-....++|+|.+++--|..
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            78899988654321    123333       3333456688999999855543

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.0011  Score=51.71  Aligned_cols=113  Identities=21%  Similarity=0.302  Sum_probs=84.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.++.++...+..+.+|+|+|.|......++..-...+|++++|-.+..++-+.-+.++...+.|..-|+....+.  
T Consensus        60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~--  137 (199)
T KOG4058|consen   60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR--  137 (199)
T ss_pred             HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc--
Confidence            345567777777777999999999999988888643688999999999999999888888888899999999887654  


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .|..|+...+-..++|.+   .+++.-|..+..++...
T Consensus       138 dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  138 DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACR  172 (199)
T ss_pred             ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEe
Confidence            355555544444445544   34444566677777643

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.47  E-value=0.0099  Score=52.57  Aligned_cols=151  Identities=11%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCC-C-------CCCCCccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLK-M-------PFEDNHFD  192 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~-~-------~~~~~~fD  192 (359)
                      ...|+.+|||--.-...+....+..++=+|. |+.++.-++...+.+  .+.+.+++..|+.+ +       .+..+..-
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt  160 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT  160 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence            3479999999876666664323456666665 556666666666543  24578899999862 1       02223345


Q ss_pred             eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccC-ch-HHHHHHhhh--hcCCCCCCCCCHHHHHHH
Q 018194          193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NK-EHVDIIQGI--ERGDALPGLRSYAEITEI  266 (359)
Q Consensus       193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~  266 (359)
                      ++++-.++.+++  +...+|+.+.+...||+.+++ +....  .... .. .........  ..+..+....+++++.++
T Consensus       161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (260)
T TIGR00027       161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRP--LDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW  237 (260)
T ss_pred             eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccc--cchhHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence            778888888887  467899999998889988876 32222  1110 00 011111111  122333445678999999


Q ss_pred             HHhCCCeEEEE
Q 018194          267 AKRVGFEVVKE  277 (359)
Q Consensus       267 l~~aGF~~i~~  277 (359)
                      |++.||+....
T Consensus       238 l~~~Gw~~~~~  248 (260)
T TIGR00027       238 LAERGWRASEH  248 (260)
T ss_pred             HHHCCCeeecC
Confidence            99999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.45  E-value=0.00055  Score=56.44  Aligned_cols=104  Identities=19%  Similarity=0.323  Sum_probs=70.6

Q ss_pred             CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCC-C--CCCCccc
Q 018194          123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAG------LDSLCEVVCGNFLKM-P--FEDNHFD  192 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~-~--~~~~~fD  192 (359)
                      .-.+.|||||.|.+...|+. +|..-+.|.+|-....+..++++....      .-.|+.+...++... |  |..++.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            45799999999999999997 577899999998888888888776543      124677777776653 2  2222222


Q ss_pred             eEEecccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -.+..+--.|+..        -...+.+..-+|++||.++.+
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence            2222222222211        136788888999999998864

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.39  E-value=0.013  Score=50.35  Aligned_cols=130  Identities=16%  Similarity=0.175  Sum_probs=74.0

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~  197 (359)
                      .|.+||-+|=..- .+..++. ....+|+.+|+++..++..++.+++.|++  |+.++.|+.+ |+|   .++||++++.
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~~~fD~f~TD  119 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELRGKFDVFFTD  119 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSEEEE-
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHhcCCCEEEeC
Confidence            5789999995433 3333333 34579999999999999999999999986  9999999987 333   3799999885


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                      -. +...-..-++.+....||.-|...+..+...+      ....                ...++++.+.+.||.+.+.
T Consensus       120 PP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~------~s~~----------------~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  120 PP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE------ASPD----------------KWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------HH----------------HHHHHHHHHHTS--EEEEE
T ss_pred             CC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc------CcHH----------------HHHHHHHHHHHCCcCHHHH
Confidence            32 22234567889999999977743332222110      0000                1136778888999998775


Q ss_pred             E
Q 018194          278 K  278 (359)
Q Consensus       278 ~  278 (359)
                      .
T Consensus       177 i  177 (243)
T PF01861_consen  177 I  177 (243)
T ss_dssp             E
T ss_pred             H
Confidence            3

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.31  E-value=0.00048  Score=64.73  Aligned_cols=95  Identities=18%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEe--CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEecccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGIT--INEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D--~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l  200 (359)
                      ..|+|..+|.|+++..|.+.+ .-|.-+=  ..+.-+...-    ..|+   |-.. .|..+ ++.-+.+||+|++.+++
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIy----dRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIY----DRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             eeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhh----hccc---chhc-cchhhccCCCCcchhheehhhhh
Confidence            589999999999999998753 2222221  1222333222    2233   2222 23332 44445899999999998


Q ss_pred             cccC---CHHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHAP---KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....   +...+|-++-|+|+|||.+++-|
T Consensus       438 s~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            8765   57899999999999999999853

; GO: 0008168 methyltransferase activity

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.21  E-value=0.0017  Score=54.58  Aligned_cols=104  Identities=15%  Similarity=0.193  Sum_probs=57.0

Q ss_pred             CCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C--CCCcc
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----F--EDNHF  191 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~--~~~~f  191 (359)
                      ++.|+|+|.-.|+.+..+|..     ..++|+|+|++......  +..+...+.++|+++++|..+..    .  -....
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~  110 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP  110 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence            469999999999988777652     34799999996543322  22233345578999999998743    1  11112


Q ss_pred             c-eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          192 D-GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       192 D-~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      + ++++-.+-|...+....|+....+++||+++++.|.
T Consensus       111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence            3 233344444456788888999999999999998553

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.19  E-value=0.0094  Score=57.70  Aligned_cols=117  Identities=21%  Similarity=0.293  Sum_probs=85.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ..+.+.+.+.+.+..+|+|..||+|.+.....+..     ...++|.|+++.....|+.+.--.|+..++....+|...-
T Consensus       174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~  253 (489)
T COG0286         174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSN  253 (489)
T ss_pred             HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccC
Confidence            44566677766777899999999999877766542     2679999999999999999888777754456666666554


Q ss_pred             CC-----CCCccceEEeccccc---cc-------------------C--C-HHHHHHHHHhccCCCCEEEEE
Q 018194          185 PF-----EDNHFDGAYSIEATC---HA-------------------P--K-LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 ~~-----~~~~fD~v~~~~~l~---~~-------------------~--~-~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |.     ..+.||.|+++--+.   +.                   +  . ...+++.+...|+|||+..++
T Consensus       254 ~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         254 PKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             CcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence            42     236799988865442   00                   0  1 257899999999999866654

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.15  E-value=0.0019  Score=55.38  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=56.0

Q ss_pred             HHHHHhcCCCCCC--EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH---HHHHHcCCC-----CCeEEEEcCC
Q 018194          112 EMAVDLIDVKAGD--RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR---LHNKKAGLD-----SLCEVVCGNF  181 (359)
Q Consensus       112 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~~~-----~~i~~~~~d~  181 (359)
                      +.+++.++++++.  +|||.-+|-|.-+..++. .|++|++++-||.+....+   ++.....-.     .+++++++|.
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            5577788888775  999999999999998886 5899999999998754443   333332211     3789999999


Q ss_pred             CC-CCCCCCccceEEecccccc
Q 018194          182 LK-MPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       182 ~~-~~~~~~~fD~v~~~~~l~~  202 (359)
                      .+ +..++++||+|+..-++.+
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            87 4456789999999777655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.09  E-value=0.0059  Score=58.89  Aligned_cols=100  Identities=22%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------CC--
Q 018194          120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-----------MP--  185 (359)
Q Consensus       120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~--  185 (359)
                      ..++.+|+=+|||. |..+...++..|+.|+++|.+++.++.+++.    |    .++...|..+           +.  
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~  233 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEE  233 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchh
Confidence            45789999999996 7777788887889999999999999888763    2    2322222211           00  


Q ss_pred             --------CCC--CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 --------FED--NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 --------~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                              +.+  ..+|+|+.......-+.+..+.+++.+.+||||.++..-
T Consensus       234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence                    011  358999887654433345444699999999999988754

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0027  Score=56.81  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=67.7

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFE-DNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~v~~  196 (359)
                      ...+|||+|.|.|.-...+-. .|. -.++.++.|+..-+......+... +........|+..  ++++ ...|++|+.
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~  191 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIV  191 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhh
Confidence            456899999999876655544 233 367778888877666655443322 1222233333322  1222 345777766


Q ss_pred             cccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          197 IEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       197 ~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      .+-|-+..+   ....++.++.++.|||.++++|-..+
T Consensus       192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            665544432   44588999999999999999885554

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.96  E-value=0.0098  Score=51.56  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=70.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH-----HHcCCCCCeEEEEcCCCCCC---CCCCc-cc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN-----KKAGLDSLCEVVCGNFLKMP---FEDNH-FD  192 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~~~~~i~~~~~d~~~~~---~~~~~-fD  192 (359)
                      ...+||++|+|+|..+...+...+++|...|+...... .+...     ....+...+.....+..+.+   +.... ||
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            35679999999998887777777889999998544332 22221     11122224555555554422   11223 99


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +|++..++.+-...+.++.-++..|..+|.+++
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l  197 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFL  197 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence            999999999888889999999999999995554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.024  Score=51.51  Aligned_cols=111  Identities=22%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      .++++|+.+|||+++-.|.=+..|.+..     ...|++-|.++..+........... .+++.+...|+...|      
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence            3578899999999999999887776631     1389999999998887777664333 345666666665544      


Q ss_pred             ---CCCCccceEEecc------cccccCC-----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 ---FEDNHFDGAYSIE------ATCHAPK-----------------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 ---~~~~~fD~v~~~~------~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                         .....||-|++.-      .+.+.++                 ...+|.+..++||+||.++-...
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC  297 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC  297 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence               1224688887632      1111111                 23688899999999999997643

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.89  E-value=0.0017  Score=58.14  Aligned_cols=88  Identities=24%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----  185 (359)
                      .+.+++.+...++..++|.--|.|+.+..+.+. ++++++|+|-++.+++.++++....  .+++.++++++.++.    
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            455677777888999999999999999999874 5689999999999999998876543  467899998887753    


Q ss_pred             -C-CCCccceEEecccc
Q 018194          186 -F-EDNHFDGAYSIEAT  200 (359)
Q Consensus       186 -~-~~~~fD~v~~~~~l  200 (359)
                       . ....+|.|+....+
T Consensus        87 ~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   87 ELNGINKVDGILFDLGV  103 (310)
T ss_dssp             HTTTTS-EEEEEEE-S-
T ss_pred             HccCCCccCEEEEcccc
Confidence             2 33577888765543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.88  E-value=0.018  Score=48.25  Aligned_cols=136  Identities=17%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcC--CEEEEEeCCHHHHHHHHHHH
Q 018194           89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSR--ANVVGITINEYQVNRARLHN  165 (359)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~g~D~s~~~~~~a~~~~  165 (359)
                      |.-.+..++.|.-..+-+.+...+. +..+.-..+-++.|-+||.|.+..-+.- +..  ..|++-|+++.+++.|+++.
T Consensus        19 G~VL~sApG~p~FPVRLAsEi~qR~-l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   19 GRVLYSAPGFPAFPVRLASEIFQRA-LHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             TTSS--BTTB----HHHHHHHHHHH-HCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             CeEEecCCCCCCccHHHHHHHHHHH-HHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            3444556666666666666555443 3444445567999999999998766653 211  48999999999999998774


Q ss_pred             H-----------------------------------------HcCCCCCeEEEEcCCCCCC-----CCCCccceEEeccc
Q 018194          166 K-----------------------------------------KAGLDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEA  199 (359)
Q Consensus       166 ~-----------------------------------------~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~  199 (359)
                      .                                         ..|-.....+.+.|+.+..     ......|+|+...-
T Consensus        98 ~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP  177 (246)
T PF11599_consen   98 SLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP  177 (246)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred             hhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence            1                                         1111223677888887721     11233599988665


Q ss_pred             ccccCC---------HHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPK---------LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~---------~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..++.+         ..++|..++.+|-+++++.+
T Consensus       178 YG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v  212 (246)
T PF11599_consen  178 YGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV  212 (246)
T ss_dssp             CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred             CcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence            554443         35799999999944444444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.79  E-value=0.011  Score=52.29  Aligned_cols=90  Identities=22%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--  185 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--  185 (359)
                      +.+.++..+.+.++...+|.--|.|+.+..+.+..+  .+++|+|-++.+++.|+++....+  +++.+++.++.++.  
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~   88 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA   88 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence            456677788888999999999999999999988543  689999999999999999987754  68999999988754  


Q ss_pred             ---CCCCccceEEeccccc
Q 018194          186 ---FEDNHFDGAYSIEATC  201 (359)
Q Consensus       186 ---~~~~~fD~v~~~~~l~  201 (359)
                         ...+.+|.|+....+.
T Consensus        89 l~~~~i~~vDGiL~DLGVS  107 (314)
T COG0275          89 LKELGIGKVDGILLDLGVS  107 (314)
T ss_pred             HHhcCCCceeEEEEeccCC
Confidence               2345788887765443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.72  E-value=0.00062  Score=50.63  Aligned_cols=85  Identities=16%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             ccceEEecccccccC------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAP------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      .||+|+|..+.-++.      -...+++.+++.|+|||.+++ |.-....|.............+..-    . ..++++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~~~~~~~n~~~i----~-lrP~~F   74 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRLSEEIRENYKSI----K-LRPDQF   74 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS-HHHHHHHHH---------GGGH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhhhHHHHhHHhce----E-EChHHH
Confidence            489999998877652      267899999999999999998 3222111221111111111111110    1 134567


Q ss_pred             HHHHHh--CCCeEEEEEec
Q 018194          264 TEIAKR--VGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~--aGF~~i~~~~~  280 (359)
                      .+.|.+  .||...+....
T Consensus        75 ~~~L~~~evGF~~~e~~~~   93 (110)
T PF06859_consen   75 EDYLLEPEVGFSSVEELGV   93 (110)
T ss_dssp             HHHHTSTTT---EEEEE--
T ss_pred             HHHHHhcccceEEEEEccc
Confidence            787776  69998875444

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.58  E-value=0.023  Score=53.51  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCC-C-CC-CCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-FLK-M-PF-EDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~  189 (359)
                      ....+.++.+||.+|||. |..+..+++..+. +++++|.+++.++.+++..   +. ..+.+...+ ... + .+ ...
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC
Confidence            445677889999999987 8888888887676 6999999999998887652   11 111111111 100 0 11 223


Q ss_pred             ccceEEeccc---------------ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEA---------------TCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~---------------l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+|+-.-.               ++-.++....+.++.+.|+|+|.+++..
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            6888876431               1112455778999999999999998863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.055  Score=48.34  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC------
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LKM------  184 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~------  184 (359)
                      .++...++|.+||-+|+|+ |..+...|+..| .+|+.+|+++..++.|++.    |-. .+.......  .++      
T Consensus       162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v~~  236 (354)
T KOG0024|consen  162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELVEK  236 (354)
T ss_pred             hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHHHh
Confidence            4456788999999999996 777777777555 5999999999999999983    211 111111111  110      


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      .+....+|+.+-...      .+..++.....+|+||.+++..|...
T Consensus       237 ~~g~~~~d~~~dCsG------~~~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  237 ALGKKQPDVTFDCSG------AEVTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             hccccCCCeEEEccC------chHHHHHHHHHhccCCEEEEeccCCC
Confidence            022345788776543      34567777889999999888776654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.45  E-value=0.02  Score=52.98  Aligned_cols=100  Identities=18%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             cCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ....++.+||-.|||. |..+..+++..|+ +|+++|.+++.++.+++.    |...-+.....++.+.....+.+|+|+
T Consensus       165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D~vi  240 (343)
T PRK09880        165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFDVSF  240 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCCEEE
Confidence            3445788999999863 5677777877676 699999999998887653    221101111112211111123588887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -.-.     . ...+....+.|+|||+++++.
T Consensus       241 d~~G-----~-~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        241 EVSG-----H-PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             ECCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            5432     1 346778889999999999864

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.42  E-value=0.046  Score=51.83  Aligned_cols=117  Identities=12%  Similarity=0.108  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhcCCCC---CCEEEEECCCCChHHHHHHh---h--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 018194          107 TRLHEEMAVDLIDVKA---GDRILDVGCGVGGPMRAIAA---H--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC  178 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~l~~---~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~  178 (359)
                      ++.....+..+.+...   -..|+-+|+|-|-+.....+   .  -..++++++-+|+++-..+.+ ....+..+|+++.
T Consensus       349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~  427 (649)
T KOG0822|consen  349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIIS  427 (649)
T ss_pred             HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEe
Confidence            3344444444433221   34788899999987765543   1  236899999999998777663 3334567899999


Q ss_pred             cCCCCCCCCCCccceEEecccccccCC---HHHHHHHHHhccCCCCEEEE
Q 018194          179 GNFLKMPFEDNHFDGAYSIEATCHAPK---LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       179 ~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .|+..++.|..+.|++++- .|..+.|   -.++|.-+.+.|||.|+.+=
T Consensus       428 ~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  428 SDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             ccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            9999998556889998863 3444433   46899999999999988763

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.011  Score=51.83  Aligned_cols=109  Identities=18%  Similarity=0.275  Sum_probs=81.0

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCccc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKM--PFEDNHFD  192 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD  192 (359)
                      .+...++||-||.|.|...+..+++.. ..+.-+|++...++..++.....  +. .+++....+|-..+  ....++||
T Consensus       118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            445668999999999999999988733 38899999999999888876643  11 35788888886553  14478999


Q ss_pred             eEEecccccccC----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+.-..=.-.|    -....+..+.+.|||||+++...
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            998754322222    14567888999999999998753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.37  E-value=0.097  Score=48.57  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=67.8

Q ss_pred             CCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CCCC-Cc
Q 018194          120 VKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-----PFED-NH  190 (359)
Q Consensus       120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-----~~~~-~~  190 (359)
                      ..++.+|+=+|||+ |.++..+++..+ .+|+.+|.++..++.|++....       ........+ .     .... ..
T Consensus       166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCC
Confidence            34455999999997 778788888655 6999999999999999885321       211111111 0     1112 36


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +|+++-.-.      ...++..+.+.++|||.+++.-...
T Consensus       239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            899876544      3458899999999999999875443

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.35  E-value=0.017  Score=49.17  Aligned_cols=102  Identities=18%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHH----HHHHHHHHHHcCCCCCeEEEEcCCCCCC---C
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQ----VNRARLHNKKAGLDSLCEVVCGNFLKMP---F  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~  186 (359)
                      ..+.++||.+||-+|+++|....++..-  +..-|++++.|+..    +..|+++       .||-.+..|+....   .
T Consensus       150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRm  222 (317)
T KOG1596|consen  150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRM  222 (317)
T ss_pred             cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheee
Confidence            4567899999999999999998888874  44689999998754    4444443       47778888887621   1


Q ss_pred             CCCccceEEecccccccCCHH-HHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLE-DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .-.-.|+|++.-.   -||.. -+.-+....||+||.+++.-
T Consensus       223 lVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  223 LVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             eeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence            1235677776443   23433 34456778899999999853

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.34  E-value=0.014  Score=54.32  Aligned_cols=102  Identities=17%  Similarity=0.073  Sum_probs=77.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMP-FEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD~v~~~  197 (359)
                      .+.+|||.=+|+|.=+..++.. .+ .+|+.-|+|++.++..+++.+..++.+ ++++.+.|+..+- .....||+|=..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            4569999999999988777765 33 599999999999999999999998887 6889898987642 246789999653


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -    +..+..+|..+.+.++.||.+.+..
T Consensus       129 P----fGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  129 P----FGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             -----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             C----CCCccHhHHHHHHHhhcCCEEEEec
Confidence            2    3467899999999999999999864

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.021  Score=51.89  Aligned_cols=97  Identities=12%  Similarity=-0.044  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----c----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 018194          103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----S----RANVVGITINEYQVNRARLHNKKAGLDSL  173 (359)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  173 (359)
                      +.+....+.-.+.+.+..+....++|+|.|+|.++..+.+.     |    .+++..|++|+...+.=+++.+...  ..
T Consensus        58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~--~~  135 (370)
T COG1565          58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE--DL  135 (370)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc--cc
Confidence            44445555555555566666779999999999999888763     2    4799999999999888777766432  11


Q ss_pred             eEEEEcCCCCCCCCCCccceEEecccccccC
Q 018194          174 CEVVCGNFLKMPFEDNHFDGAYSIEATCHAP  204 (359)
Q Consensus       174 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  204 (359)
                      +.+   ......+|.+-.-+|+++..+..+|
T Consensus       136 ~~~---~~~~e~~p~~~~~i~~~NElfDAlP  163 (370)
T COG1565         136 IRW---VEWVEDLPKKFPGIVVSNELFDALP  163 (370)
T ss_pred             hhH---HHHHHhccccCceEEEechhhcccc
Confidence            111   1111112333234566666666655

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.26  E-value=0.03  Score=56.64  Aligned_cols=125  Identities=18%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             CCCEEEEECCCCChHHHHHHh-h-------c-----CCEEEEEeCCH---HHHHHHH-----------HHHHH-----cC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-H-------S-----RANVVGITINE---YQVNRAR-----------LHNKK-----AG  169 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~-------~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~-----~~  169 (359)
                      +.-+|+|+|-|+|.......+ .       +     ..+++.+|..|   +.+..+.           +....     .|
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            346999999999985544432 1       2     24888999643   3333322           11111     11


Q ss_pred             C------CC--CeEEEEcCCCCC-CCCCCccceEEeccc-ccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccC
Q 018194          170 L------DS--LCEVVCGNFLKM-PFEDNHFDGAYSIEA-TCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE  237 (359)
Q Consensus       170 ~------~~--~i~~~~~d~~~~-~~~~~~fD~v~~~~~-l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~  237 (359)
                      +      ..  ++++..+|+.+. +--...+|+++.... -..-|+  -..+++.+.++++|||.+.-+.          
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t----------  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT----------  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee----------
Confidence            1      01  345667787652 211256899987542 112222  2589999999999999998421          


Q ss_pred             chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          238 NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                                           +...++..|.++||++...
T Consensus       207 ---------------------~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        207 ---------------------SAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             ---------------------hHHHHHHHHHHcCCeeeec
Confidence                                 2346778888888887653

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.23  E-value=0.0096  Score=54.93  Aligned_cols=61  Identities=20%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ..|||||+|||.++...++..+-.|++++.-..|.+.|++...+.|+.++|.++.---.+.
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence            3689999999999987777655689999999999999999999999999999887665554

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.93  E-value=0.0029  Score=55.38  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHH-------HHHH--HcCCCCCeEEEEcCCCCCCC-CCC--
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR-------LHNK--KAGLDSLCEVVCGNFLKMPF-EDN--  189 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~-------~~~~--~~~~~~~i~~~~~d~~~~~~-~~~--  189 (359)
                      .+++|||+|||.|.............+...|.|.+.++...       ....  ......-......+..+..+ ..+  
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~  195 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERT  195 (282)
T ss_pred             cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcccc
Confidence            57899999999999888887754478888888887763211       0000  00000001112221111111 113  


Q ss_pred             ccceEEecccccccCCHHHH-HHHHHhccCCCCEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDV-YAEVFRVLKPGSLYVS  225 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~  225 (359)
                      .||+|.+...+...+....+ ......++++.|.+++
T Consensus       196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence            78999998888777666665 6667778889998876

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.92  E-value=0.11  Score=47.49  Aligned_cols=97  Identities=24%  Similarity=0.321  Sum_probs=65.9

Q ss_pred             hcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194          117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  189 (359)
                      ...+.++.+||..|+| .|..+..+++..+++|++++.++...+.+++.    +..    .+..+-...      .....
T Consensus       160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~----~~~~~~~~~~~~~~~~~~~~  231 (338)
T cd08254         160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD----EVLNSLDDSPKDKKAAGLGG  231 (338)
T ss_pred             ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC----EEEcCCCcCHHHHHHHhcCC
Confidence            3456788899998876 37788888887788999999999988877542    321    111111110      12345


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+|+....      ....++++.+.|+++|.++...
T Consensus       232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             CceEEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence            6898875421      2457888999999999998753

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PHA01634 hypothetical protein

Probab=95.89  E-value=0.065  Score=40.98  Aligned_cols=47  Identities=15%  Similarity=-0.030  Sum_probs=41.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      .+.+|+|||++.|..+..++-.....|+++++++...+..++.++..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            47899999999999999988765569999999999999998877654

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=95.88  E-value=0.42  Score=44.71  Aligned_cols=113  Identities=15%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCCh----HHHHHHhh----cCCEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeE
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGG----PMRAIAAH----SRANVVGITI----NEYQVNRARLHNK----KAGLDSLCE  175 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~----~~~~l~~~----~~~~v~g~D~----s~~~~~~a~~~~~----~~~~~~~i~  175 (359)
                      +.|++.+.-....+|+|+|.|.|.    +...|+.+    |..+||+|+.    +...++...++..    ..|++  .+
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe  177 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE  177 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence            456666665667799999999996    44455554    3369999999    7777777666543    34655  44


Q ss_pred             EEEc---CCCCCC-----CCCCccceEEecccccccCC--------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          176 VVCG---NFLKMP-----FEDNHFDGAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       176 ~~~~---d~~~~~-----~~~~~fD~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      |...   +.+++.     ...+..=+|.+.+.+||+.+        ...+|+. .+.|+|. .++++|.
T Consensus       178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~-vvv~~E~  244 (374)
T PF03514_consen  178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPK-VVVLVEQ  244 (374)
T ss_pred             EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCC-EEEEEee
Confidence            4442   233321     22233335556677788752        2345554 4578998 4444443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.85  E-value=0.034  Score=53.63  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------C--C-
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-----------M--P-  185 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~--~-  185 (359)
                      .++.+|+=+|||. |..+..+++..|+.|+++|.++..++.++..    |    .+++..|..+           +  + 
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHH
Confidence            4578999999996 6677777777788999999999987777652    2    2333333211           0  0 


Q ss_pred             -------CC--CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          186 -------FE--DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       186 -------~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                             ++  -..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++=
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                   11  24689998876555555565678889999999998773

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.82  E-value=0.038  Score=46.84  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCC-----CCCccceE
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLKMPF-----EDNHFDGA  194 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~-----~~~~fD~v  194 (359)
                      ++.++||||.|.-..--.+-. ..+.+.+|.|+++..++.|+...... ++...|+.....-.+--|     ..+.||++
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t  157 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT  157 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence            456899999997654433333 25789999999999999999988766 565566665433222112     25789999


Q ss_pred             Eecccccc
Q 018194          195 YSIEATCH  202 (359)
Q Consensus       195 ~~~~~l~~  202 (359)
                      .|+-.+|.
T Consensus       158 lCNPPFh~  165 (292)
T COG3129         158 LCNPPFHD  165 (292)
T ss_pred             ecCCCcch
Confidence            99987764

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.77  E-value=0.012  Score=49.55  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             CEEEEECCCCChHHHHHHhhc-------C---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          124 DRILDVGCGVGGPMRAIAAHS-------R---ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~-------~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      .+++|+++..|.|+..|.+..       +   ..|++||+.+-.           .++ .|.-+++|+....        
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence            589999999999999888731       1   139999985432           222 4677899998743        


Q ss_pred             CCCCccceEEecccc-----cccCC------HHHHHHHHHhccCCCCEEEE
Q 018194          186 FEDNHFDGAYSIEAT-----CHAPK------LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l-----~~~~~------~~~~l~~~~~~LkpgG~l~~  225 (359)
                      |..+..|+|+|..+-     |.+.+      ...+|.-...+|||||.|+.
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            556789999997743     32322      23456667789999999984

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.62  E-value=0.048  Score=49.62  Aligned_cols=56  Identities=27%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL  163 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~  163 (359)
                      +++.+.+.+..+..+-..|+|+|.|.|.+++.++-..+..|.+||-|....++|++
T Consensus       139 ~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  139 RRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            34444455555556667999999999999999998788999999999877776654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.59  E-value=0.052  Score=47.85  Aligned_cols=77  Identities=18%  Similarity=0.166  Sum_probs=50.2

Q ss_pred             CCEEEEECCCCChHHHHHHhh-----c----CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEcCCCCCCCCC
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-----S----RANVVGITINEYQVNRARLHNKKA-----GLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-----~----~~~v~g~D~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..+|+|+|+|+|.++..+.+.     +    ..+++.+|+||.+.+.-+++....     ....+|.+ ..++.+.|   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            469999999999999988763     1    268999999999988888776542     12334555 23443332   


Q ss_pred             CccceEEecccccccC
Q 018194          189 NHFDGAYSIEATCHAP  204 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~  204 (359)
                       ..-+|+++.++..+|
T Consensus        95 -~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 -FPGFIIANELFDALP  109 (252)
T ss_dssp             -CCEEEEEESSGGGS-
T ss_pred             -CCEEEEEeeehhcCc
Confidence             345677777776665

; PDB: 4F3N_A 1ZKD_B.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.45  E-value=0.62  Score=42.00  Aligned_cols=162  Identities=10%  Similarity=0.059  Sum_probs=96.8

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CC
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMP----FE  187 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~  187 (359)
                      +.+.+.-. ...|+-+|||--.-...+-...+..|+-+|. |+.++.=++.+++.+  .+...+++..|+.+..    +.
T Consensus        85 ~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~  162 (297)
T COG3315          85 VRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALA  162 (297)
T ss_pred             HHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHH
Confidence            33344333 4689999999654444443323467777776 666666666666654  2346899999998533    22


Q ss_pred             -----CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCc-hHHHHHHhhh--hcCCCCCCC
Q 018194          188 -----DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN-KEHVDIIQGI--ERGDALPGL  257 (359)
Q Consensus       188 -----~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~  257 (359)
                           .+.--++++-+++.+++  ...++|..+...+.||-.++.............. ..........  ..+......
T Consensus       163 ~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  242 (297)
T COG3315         163 AAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFG  242 (297)
T ss_pred             hcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceecc
Confidence                 33444788888999987  3678999999999998888764321111111110 0000111100  001111223


Q ss_pred             CCHHHHHHHHHhCCCeEEEE
Q 018194          258 RSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       258 ~~~~~~~~~l~~aGF~~i~~  277 (359)
                      ....++..+|.+.||.....
T Consensus       243 ~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         243 DDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             CCHHHHHHHHHhcCEEEEec
Confidence            45789999999999998765

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.43  E-value=0.034  Score=44.41  Aligned_cols=132  Identities=21%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHH-HHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEecccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR-ARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l  200 (359)
                      +++++-+|+..-..-....++..++|..++.++--++. .+.+.        .++...|+.. +.--.++||.+.|..++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si   73 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI   73 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence            56788888875444333334444678888876422111 01110        1122222211 11124789999999999


Q ss_pred             cccC--------C---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          201 CHAP--------K---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       201 ~~~~--------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      +|..        |   ....+.++.++|||||.+++......+.....                ....+.+..+..++  
T Consensus        74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN----------------ahRiYg~~rL~mm~--  135 (177)
T PF03269_consen   74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN----------------AHRIYGPIRLAMMF--  135 (177)
T ss_pred             ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe----------------cceeecHhHHHHHh--
Confidence            9872        2   24788899999999999998654433221110                11334444555544  


Q ss_pred             CCCeEEEEEec
Q 018194          270 VGFEVVKEKDL  280 (359)
Q Consensus       270 aGF~~i~~~~~  280 (359)
                      .||+.+.....
T Consensus       136 ~gfe~i~tfs~  146 (177)
T PF03269_consen  136 YGFEWIDTFSG  146 (177)
T ss_pred             CCcEEEeeecc
Confidence            59999987654

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.41  E-value=0.23  Score=45.61  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ...++++.+||=.|+|. |..+..+++..|++|++++.+++.++.+++.    |..   .++  |..+.  ..+.+|+++
T Consensus       160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~--~~~~~d~~i  228 (329)
T TIGR02822       160 RASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT--PPEPLDAAI  228 (329)
T ss_pred             hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc--CcccceEEE
Confidence            45778899999999763 5566677777788999999999888777664    322   111  11111  123578765


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....      ...+....+.|++||+++++-
T Consensus       229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       229 LFAPA------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence            43321      246888899999999998864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=95.38  E-value=0.017  Score=51.73  Aligned_cols=82  Identities=24%  Similarity=0.332  Sum_probs=62.9

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHH-------HHHHHHHcCC-CCCeEEEEcCCCCCCC
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR-------ARLHNKKAGL-DSLCEVVCGNFLKMPF  186 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~-------a~~~~~~~~~-~~~i~~~~~d~~~~~~  186 (359)
                      +......||+-|+|--.|||.+....|.. |+.|+|.||+-.++..       .+.+++..|. +.-+.+..+|....++
T Consensus       201 AN~Amv~pGdivyDPFVGTGslLvsaa~F-Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHF-GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL  279 (421)
T ss_pred             hhhhccCCCCEEecCccccCceeeehhhh-cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence            34456789999999999999998887774 8899999999888872       3456666663 3346788899888664


Q ss_pred             -CCCccceEEec
Q 018194          187 -EDNHFDGAYSI  197 (359)
Q Consensus       187 -~~~~fD~v~~~  197 (359)
                       ....||+|+|.
T Consensus       280 rsn~~fDaIvcD  291 (421)
T KOG2671|consen  280 RSNLKFDAIVCD  291 (421)
T ss_pred             hhcceeeEEEeC
Confidence             34589999984

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.33  E-value=0.077  Score=46.66  Aligned_cols=96  Identities=22%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccc
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNHFD  192 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD  192 (359)
                      .+.++.+||..|+|+ |..+..+++..+.+|++++.++...+.+++.    +..   .++...-.+.     ....+.+|
T Consensus       131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcCCCCC
Confidence            347889999999986 6666777776788999999998877776543    211   1111110000     01235689


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +++....     . ...+..+.+.|+++|.++...
T Consensus       204 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVG-----G-PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCC-----C-HHHHHHHHHhcccCCEEEEEc
Confidence            9886432     1 145677889999999998753

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.30  E-value=0.24  Score=45.93  Aligned_cols=97  Identities=12%  Similarity=0.069  Sum_probs=61.3

Q ss_pred             CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITI---NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ..++.+||-+|+|. |.++..+++..+++|++++.   ++..++.+++.    |.. .+.....+..+. ...+.+|+|+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----Ga~-~v~~~~~~~~~~-~~~~~~d~vi  243 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----GAT-YVNSSKTPVAEV-KLVGEFDLII  243 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCE-EecCCccchhhh-hhcCCCCEEE
Confidence            56788999999874 66777788877889999986   67766666542    321 111111111110 0124588887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      -.-.      -...+.+..+.|++||.++++..
T Consensus       244 d~~g------~~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         244 EATG------VPPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             ECcC------CHHHHHHHHHHccCCcEEEEEec
Confidence            6432      12367888999999999987643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.24  E-value=0.067  Score=47.55  Aligned_cols=97  Identities=19%  Similarity=0.132  Sum_probs=74.8

Q ss_pred             CEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194          124 DRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       124 ~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~  202 (359)
                      .+|.-||.|. |..+..+|--.++.|+.+|+|...++.....+.     .+++..-.+..++...-...|+++..-.+.-
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLIpg  243 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLIPG  243 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence            4788899885 778888887778999999999988887766543     3566666666554433457899988766666


Q ss_pred             cCCHHHHHHHHHhccCCCCEEEE
Q 018194          203 APKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       203 ~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ...|.-+.+++...+|||+.++=
T Consensus       244 akaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEE
Confidence            66788899999999999998874

>PRK13699 putative methylase; Provisional

Probab=95.16  E-value=0.062  Score=46.51  Aligned_cols=51  Identities=29%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             EEEEcCCCCC--CCCCCccceEEeccccc----c-----c--C---C-HHHHHHHHHhccCCCCEEEE
Q 018194          175 EVVCGNFLKM--PFEDNHFDGAYSIEATC----H-----A--P---K-LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       175 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~-----~--~---~-~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++.++|+.+.  .++++++|+|+..--..    .     +  .   + ....+.+++|+|||||.+++
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5667777654  46788888888752111    0     0  0   1 24788999999999998876

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.95  E-value=0.21  Score=45.60  Aligned_cols=101  Identities=16%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIEAT  200 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l  200 (359)
                      ..+|+|.=+|+|.=++.++...+. +|+.-|+||+.++.++++...+. ..+...+..|+..+-. ....||+|=..   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN~lm~~~~~~fd~IDiD---  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDANALLHELHRAFDVIDID---  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHHHHHHhcCCCccEEecC---
Confidence            679999999999988888875454 99999999999999999988762 2345666677765432 13678877432   


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                       -+..+..++....+.++.||.+.+...
T Consensus       129 -PFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         129 -PFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             -CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence             133677889999999999999998643

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.94  E-value=0.3  Score=40.31  Aligned_cols=105  Identities=12%  Similarity=0.097  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------FEDN  189 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~  189 (359)
                      .+..|+|+|.-.|..+...|.   ..|  .+|+++|++-..++.+-..      .+.|.|++++-.+..       ...+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence            346899999999988777765   244  7999999987665544322      246999999988743       1223


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD  232 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  232 (359)
                      .--+.++..+-|+.......|+-..++|.-|-++++.+....+
T Consensus       143 y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d  185 (237)
T COG3510         143 YPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND  185 (237)
T ss_pred             CCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence            2344455666666666677788888999999999987655443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.93  E-value=0.47  Score=44.32  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  188 (359)
                      ....+.++.+||=.|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++..+-.+.     ....
T Consensus       185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~~~  257 (371)
T cd08281         185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVRELTG  257 (371)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHHhC
Confidence            445677889999999863 5566777776777 699999999988887653    321   1221111110     0112


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.+|+|+-.-.      -...+....+.|++||+++++.
T Consensus       258 ~g~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         258 GGVDYAFEMAG------SVPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence            35888875321      1346777889999999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK11524 putative methyltransferase; Provisional

Probab=94.92  E-value=0.12  Score=46.49  Aligned_cols=46  Identities=24%  Similarity=0.185  Sum_probs=40.2

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      .+|+.|||.-||+|..+....+ .+-+.+|+|++++.++.|++|+..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence            5799999999999988876555 578999999999999999999753

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.85  E-value=0.19  Score=44.92  Aligned_cols=98  Identities=20%  Similarity=0.137  Sum_probs=62.0

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCC-C-C-CCCCc
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLK-M-P-FEDNH  190 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~-~-~-~~~~~  190 (359)
                      .....++.+||=+|+|. |..+..+++..+++ |+++|.++..++.+++.    |..   .++. .+..+ . . .....
T Consensus       115 ~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g  187 (280)
T TIGR03366       115 AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNGRG  187 (280)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCCCC
Confidence            34455889999998863 55667777766775 99999999888777653    221   1111 01000 0 0 11235


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-.-.      -...++...+.|+|+|+++++-
T Consensus       188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence            888865321      2346788899999999999864

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=1.1  Score=38.66  Aligned_cols=125  Identities=10%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 018194           99 PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSL  173 (359)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  173 (359)
                      |..+-....+.+...+...   ..+...+|+|+|+-.-++.|.+.     .-..++.+|+|...++..-+.....-..-.
T Consensus        58 pTRtEaaIl~~~a~Eia~~---~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~  134 (321)
T COG4301          58 PTRTEAAILQARAAEIASI---TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE  134 (321)
T ss_pred             CchhHHHHHHHHHHHHHHh---hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe
Confidence            3333333344444444444   44779999999999877777652     126899999999988654443333222223


Q ss_pred             eEEEEcCCCCC-C-CCCCcc-ceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          174 CEVVCGNFLKM-P-FEDNHF-DGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       174 i~~~~~d~~~~-~-~~~~~f-D~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.-+.+|.+.. . ++...= =.++....+..+.  +-..+|..++..|+||-++++-
T Consensus       135 v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         135 VNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            55566776541 1 222211 2233444555553  4668999999999999999873

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=94.57  E-value=0.27  Score=45.12  Aligned_cols=93  Identities=27%  Similarity=0.395  Sum_probs=60.6

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCccceEE
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN---FLKMPFEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~fD~v~  195 (359)
                      .++.+||-.|||. |..+..+++..|. ++++++.++...+.+++.    +..   .++..+   ........+.+|+++
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl  236 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF  236 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence            3788999998875 6677777777777 899999998888765543    221   122111   111111123589887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ....      ....++.+.+.|+++|+++.+
T Consensus       237 d~~g------~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         237 EASG------APAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             ECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence            6432      134578889999999999865

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.51  E-value=0.43  Score=44.33  Aligned_cols=99  Identities=21%  Similarity=0.244  Sum_probs=63.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  187 (359)
                      ....+.++.+||-.|||. |..+..+++..|+ +|+++|.++...+.+++.    |..   .++...-.+.     . ..
T Consensus       170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~~  242 (358)
T TIGR03451       170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALTG  242 (358)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHhC
Confidence            344677899999998864 5667777887777 599999999988887543    321   1221111110     0 12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-.-.     . ...+....+.+++||+++++.
T Consensus       243 ~~g~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       243 GFGADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence            235888875322     2 245677888999999998754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.49  E-value=0.098  Score=46.75  Aligned_cols=66  Identities=15%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             EEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEecc
Q 018194          125 RILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE--DNHFDGAYSIE  198 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~  198 (359)
                      +++|+-||.|.++..+.+. |. .+.++|+++..++..+.++..       ....+|+.++...  ...+|+++...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCC
Confidence            7999999999998888764 44 577899999999888776531       2567777776422  35699998765

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.47  E-value=0.12  Score=47.55  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCcc
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FEDNHF  191 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~f  191 (359)
                      ..+.+.++.+||=+|+|. |..+..+++..+++ |+++|.+++..+.+++.    |...-+.....+...+ . .....+
T Consensus       157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         157 RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCC
Confidence            445677899999998763 55666777777787 99999999888777543    3211011111110000 0 122368


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|+-...      -...+....+.|+++|+++++.
T Consensus       233 d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         233 DVAIECSG------NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence            98875332      2335567788999999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.47  E-value=0.024  Score=49.87  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             CCEEEEECCCCChHHH-HHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          123 GDRILDVGCGVGGPMR-AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~-~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      +..|+|+=+|.|+++. .+.......|+++|.+|..++..++.++..+..+++..+.+|-... -+....|.|....   
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGL---  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGL---  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeecc---
Confidence            4789999999999998 5555444699999999999999999888877777777888887664 3456778776543   


Q ss_pred             ccCCHHHHHHHHHhccCCCC--EEEEEE
Q 018194          202 HAPKLEDVYAEVFRVLKPGS--LYVSYE  227 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG--~l~~~~  227 (359)
                       +|.-++-.-.+..+|||.|  .+-+.+
T Consensus       271 -lPSse~~W~~A~k~Lk~eggsilHIHe  297 (351)
T KOG1227|consen  271 -LPSSEQGWPTAIKALKPEGGSILHIHE  297 (351)
T ss_pred             -ccccccchHHHHHHhhhcCCcEEEEec
Confidence             4554444555667777744  444443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.46  E-value=0.21  Score=45.95  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHH-------HHHHHHcCC-
Q 018194          100 GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRA-------RLHNKKAGL-  170 (359)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a-------~~~~~~~~~-  170 (359)
                      .+...+.+......+.+.+.+.+++...|+|.|.|.+...++...++ .-+|+++....-+.+       ++...-.|- 
T Consensus       170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~  249 (419)
T KOG3924|consen  170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK  249 (419)
T ss_pred             ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence            34455666666777888889999999999999999999988876443 556666543322222       122222333 


Q ss_pred             CCCeEEEEcCCCCCCC---CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          171 DSLCEVVCGNFLKMPF---EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       171 ~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +..+..+++++.+..+   -....++|+++.+... |+..--+.++..-+++|-+++-.+
T Consensus       250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSK  308 (419)
T ss_pred             cCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccc
Confidence            4567888888876321   1245688888776542 445555568999999999998643

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.42  E-value=0.1  Score=40.48  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccceEEecccccccCC
Q 018194          132 GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FEDNHFDGAYSIEATCHAPK  205 (359)
Q Consensus       132 G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~  205 (359)
                      |.|..+..+++..|++|+++|.++..++.+++.    |-   ..++..+-.+.     . .+...+|+|+-.-.      
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecC------
Confidence            357788899997789999999999998888764    21   12333322211     0 23347899876532      


Q ss_pred             HHHHHHHHHhccCCCCEEEEEEeee
Q 018194          206 LEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       206 ~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      -...++....+|+|||+++++....
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cHHHHHHHHHHhccCCEEEEEEccC
Confidence            2578899999999999999875443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.38  E-value=0.15  Score=43.74  Aligned_cols=50  Identities=26%  Similarity=0.286  Sum_probs=36.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL  163 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~  163 (359)
                      +.+++.. ..+|..|||.-||+|..+....+ .+-+.+|+|+++..++.|++
T Consensus       182 ~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  182 ERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence            3344433 35689999999999988876655 57899999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.32  E-value=0.81  Score=37.45  Aligned_cols=128  Identities=16%  Similarity=0.115  Sum_probs=73.4

Q ss_pred             ECCCCChHHHHHHhh-c-CCEEEEE--eCCHHHHHHHH---HHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEec
Q 018194          129 VGCGVGGPMRAIAAH-S-RANVVGI--TINEYQVNRAR---LHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSI  197 (359)
Q Consensus       129 iGcG~G~~~~~l~~~-~-~~~v~g~--D~s~~~~~~a~---~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~  197 (359)
                      ||=|.-.++..|++. . +..+++.  |...+..+...   .+.....-..-.-....|+.++.    .....||.|+.+
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            344444566666664 2 3455554  44333333222   33332211111234456776654    256889999988


Q ss_pred             ccccc-----cC-C-------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          198 EATCH-----AP-K-------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       198 ~~l~~-----~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                      +...-     -. +       ...+++.+..+|+++|.+.+.-.... .|                        +.=.+.
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~-py------------------------~~W~i~  137 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ-PY------------------------DSWNIE  137 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-CC------------------------ccccHH
Confidence            75332     00 1       34788999999999999998522111 10                        111566


Q ss_pred             HHHHhCCCeEEEEEecC
Q 018194          265 EIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~~  281 (359)
                      ++.+++||..++...+.
T Consensus       138 ~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  138 ELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             HHHHhcCCEEEEEecCC
Confidence            88889999999987764

>PRK13699 putative methylase; Provisional

Probab=94.29  E-value=0.25  Score=42.79  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=40.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      .+|+.|||.-||+|..+....+ .+.+++|+|+++...+.+.++....
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence            4788999999999988877665 4789999999999999999988654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.21  E-value=0.35  Score=45.66  Aligned_cols=97  Identities=19%  Similarity=0.195  Sum_probs=63.1

Q ss_pred             HHHHHhcCC-CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDV-KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.+.+..++ .+|.+|+=+|||. |......++..|++|+++|.++.....|+..    |.    ...  +..+.   -.
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~---v~  256 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA---VK  256 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH---Hc
Confidence            444454433 4789999999996 6666666666788999999999887776542    32    211  11111   13


Q ss_pred             ccceEEecccccccCCHHHHHHH-HHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAE-VFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~~~~  227 (359)
                      .+|+|+..-.     . ..++.. ..+.+|+||+++..-
T Consensus       257 ~aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         257 EGDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeC
Confidence            4698876421     2 334554 589999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=93.96  E-value=0.18  Score=47.39  Aligned_cols=109  Identities=16%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             CCCEEEEECCCCCh--HHHHHH-hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC--CCC-CCCccceE
Q 018194          122 AGDRILDVGCGVGG--PMRAIA-AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLK--MPF-EDNHFDGA  194 (359)
Q Consensus       122 ~~~~vLDiGcG~G~--~~~~l~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--~~~-~~~~fD~v  194 (359)
                      ..+.++|+|.|.|.  ++..+. ....-.++.||.|..|........... -...-.++.. .+..  +|. ..+.||+|
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~~v~~~~~~r~~~pi~~~~~yDlv  278 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEPIVRKLVFHRQRLPIDIKNGYDLV  278 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCchhccccchhcccCCCCcccceeeE
Confidence            34678889888765  333222 223468999999999998887765541 0000111111 1111  232 34569999


Q ss_pred             EecccccccCCH---HHHHHH-HHhccCCCCEEEEEEeeeC
Q 018194          195 YSIEATCHAPKL---EDVYAE-VFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       195 ~~~~~l~~~~~~---~~~l~~-~~~~LkpgG~l~~~~~~~~  231 (359)
                      ++.+.++++.+.   ..+.++ .++..++|+.+++++-..+
T Consensus       279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            999999998742   333333 4566789999999875443

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.60  E-value=0.063  Score=50.60  Aligned_cols=103  Identities=15%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v  194 (359)
                      .++.+|||.=|++|.-++..++. ++ .+|++.|.++..++..+++.+..+..+.++..+.|+..+-    -....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            45679999999999988888874 33 4899999999999999998888777777788888886642    234789998


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -..-    ...+..+|..+.+.++.||.+.+..
T Consensus       188 DLDP----yGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  188 DLDP----YGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ecCC----CCCccHHHHHHHHHhhcCCEEEEEe
Confidence            6522    2356789999999999999999864

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.58  E-value=0.6  Score=43.06  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ...++.+||-+|||. |.++..+++. . +.+|+++|.++..++.+++    .+.    .....+   +. ....+|+|+
T Consensus       160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~~~~~~---~~-~~~g~d~vi  227 (341)
T cd08237         160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----TYLIDD---IP-EDLAVDHAF  227 (341)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----eeehhh---hh-hccCCcEEE
Confidence            456799999999874 5555666663 3 4689999999988887764    111    111111   11 112478887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -.-.  . +.....+....++|++||+++++-
T Consensus       228 D~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         228 ECVG--G-RGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             ECCC--C-CccHHHHHHHHHhCcCCcEEEEEe
Confidence            4322  1 113457888999999999998864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.53  E-value=1.3  Score=37.42  Aligned_cols=109  Identities=23%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCCh--HHHHHH---hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGG--PMRAIA---AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP  185 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~  185 (359)
                      ++|..+..-.....++++.|+.|.  .+..|+   ++.+.++++|-+++..+...++.....++.+.++|+.++..+ +.
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~  110 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM  110 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence            334444433445678999766443  344443   357889999999988888888888888877777999988533 21


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhc--cCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRV--LKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~~  226 (359)
                      ..-...|+++...      +.+++.+++.+.  +.|.|-+++.
T Consensus       111 ~~~~~iDF~vVDc------~~~d~~~~vl~~~~~~~~GaVVV~  147 (218)
T PF07279_consen  111 PGLKGIDFVVVDC------KREDFAARVLRAAKLSPRGAVVVC  147 (218)
T ss_pred             hhccCCCEEEEeC------CchhHHHHHHHHhccCCCceEEEE
Confidence            1124578776643      223333333333  4455766654

The function of this family is unknown.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.50  E-value=0.57  Score=43.77  Aligned_cols=52  Identities=13%  Similarity=0.226  Sum_probs=41.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK  166 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~  166 (359)
                      -.+.+.+.++++||-|.+|.......+...| .+|++||+||.++...+-+.+
T Consensus        27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   27 DMEALNIGPDDRVLTITSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHhCCCCCCeEEEEccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            4567889999999999988777666666654 699999999999887766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.48  E-value=1.2  Score=40.53  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CC
Q 018194          115 VDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKM-----PF  186 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~  186 (359)
                      .....+.++.+||=.|+  |.|..+..+++..|++|++++.+++..+.+++    .|..   .++..+- ...     ..
T Consensus       131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHh
Confidence            34556788999998884  46778888888778899999999888777654    2321   1221111 011     01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..+.+|+|+-...       ...+....++|++||+++.+
T Consensus       204 ~~~gvdvv~d~~G-------~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       204 SPDGYDCYFDNVG-------GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             CCCCeEEEEECCC-------HHHHHHHHHHhCcCcEEEEe
Confidence            1245888875321       12457889999999999975

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.36  E-value=0.53  Score=43.56  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG----NFLK-M-PFE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~~~-~-~~~  187 (359)
                      ....+.+|.+||=.|+  |.|..+..+++..|++|++++.++...+.+++.   .|..   .++..    +..+ + ...
T Consensus       152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~  225 (348)
T PLN03154        152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF  225 (348)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC
Confidence            3456788999999998  367788888987789999999998877766532   2322   12211    1111 0 011


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+.+|+|+-.-.       ...+..+.++|++||+++++-
T Consensus       226 ~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 PEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence            235888875322       246788899999999998753

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.34  E-value=0.42  Score=43.42  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ++.+||=+|||. |.++..+++..|++ |+++|.++..++.+...    .      ++  |..+.  ....+|+|+-.-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~~G  209 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDASG  209 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEECCC
Confidence            577899999874 66777888876775 67789888777665432    0      11  11110  1245888875432


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                            -...+..+.+.|+|||+++++-
T Consensus       210 ------~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       210 ------DPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ------CHHHHHHHHHhhhcCcEEEEEe
Confidence                  2346788889999999999864

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.30  E-value=0.16  Score=37.74  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=25.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeC
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITI  153 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~  153 (359)
                      .+....+|||||.|.+...|.+. |-.-.|+|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSE-GYPGWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhC-CCCcccccc
Confidence            34568999999999999888774 567788886

; GO: 0008168 methyltransferase activity

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=93.16  E-value=0.22  Score=44.59  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             CCEEEEECCCCChHHHHHHhhc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------C
Q 018194          123 GDRILDVGCGVGGPMRAIAAHS---------------------RANVVGITINEY--QVNRARLHNKKA----------G  169 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~g~D~s~~--~~~~a~~~~~~~----------~  169 (359)
                      ..+||-||.|.|.=...++...                     ...++.||+.+-  .++.....+...          .
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999986433333211                     148999999653  344433333222          0


Q ss_pred             C------CCCeEEEEcCCCCCCCCC-------CccceEEecccccc-----cCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          170 L------DSLCEVVCGNFLKMPFED-------NHFDGAYSIEATCH-----APKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       170 ~------~~~i~~~~~d~~~~~~~~-------~~fD~v~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +      .-++.|.+.|+..+..++       ...|+|...+.+.-     ++.-.++|.++-..++||-.++++|
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence            0      126889999998875321       25688877776543     3456789999999999999999986

>PTZ00357 methyltransferase; Provisional

Probab=92.96  E-value=0.64  Score=45.95  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             CEEEEECCCCChHHHHHHh---h--cCCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 018194          124 DRILDVGCGVGGPMRAIAA---H--SRANVVGITINEYQVNRARLHN-KKAGL-------DSLCEVVCGNFLKMPFED--  188 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~---~--~~~~v~g~D~s~~~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~--  188 (359)
                      ..|+-+|+|-|-+.....+   .  ...+|++|+-++........+. ....+       .+.|+++..|+..+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            3689999999987655543   2  2368999999966433333332 22233       245899999999975331  


Q ss_pred             ---------CccceEEecccccccCC---HHHHHHHHHhccCC----CCE
Q 018194          189 ---------NHFDGAYSIEATCHAPK---LEDVYAEVFRVLKP----GSL  222 (359)
Q Consensus       189 ---------~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~  222 (359)
                               +.+|+|++ ..|.-+.|   -.++|..+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                     36899987 33444433   45888888888887    776

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.91  E-value=0.3  Score=42.60  Aligned_cols=118  Identities=15%  Similarity=0.121  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh----h--cCCEEEEEeCCH--------------------------
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA----H--SRANVVGITINE--------------------------  155 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~--~~~~v~g~D~s~--------------------------  155 (359)
                      ..+.+.+...+...-...|+|+||-.|..+..++.    .  .+-+++++|.-+                          
T Consensus        60 ~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~  139 (248)
T PF05711_consen   60 DNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLA  139 (248)
T ss_dssp             HHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCT
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccc
Confidence            33334344444333345899999999987765543    1  245788887411                          


Q ss_pred             HHHHHHHHHHHHcCC-CCCeEEEEcCCCC-CC-CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          156 YQVNRARLHNKKAGL-DSLCEVVCGNFLK-MP-FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       156 ~~~~~a~~~~~~~~~-~~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..++..++++...++ .+++.++.+.+.+ +| .+...+-++..-.  ........+|..++..|.|||++++-|
T Consensus       140 ~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  140 VSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFDD  212 (248)
T ss_dssp             HHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             cCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            134445555555553 4589999999866 23 2223222222211  111235689999999999999999844

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.84  E-value=0.68  Score=42.83  Aligned_cols=101  Identities=20%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-EDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~  189 (359)
                      ...+.++.+||-.|||. |..+..+++..+++|+++|.+++.++.+++.    |...-+.....+..++.     + ...
T Consensus       161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccC
Confidence            35677899999999965 6677777887788999999999988877653    22111111111100000     0 112


Q ss_pred             ccc----eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFD----GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD----~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|    +|+-.     .. ....+....++|++||+++++.
T Consensus       237 g~d~~~d~v~d~-----~g-~~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       237 GLRSTGWKIFEC-----SG-SKPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             CCCCCcCEEEEC-----CC-ChHHHHHHHHHHhcCCeEEEEC
Confidence            344    44321     11 2346677788999999998864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.80  E-value=1.4  Score=40.01  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=64.4

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~  188 (359)
                      ....+.+|.+||=.|+  |.|..+..+++..|++|++++.+++..+.+++.    |..   .++...-.+.     ....
T Consensus       137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~~  209 (329)
T cd08294         137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAAP  209 (329)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHCC
Confidence            4456778999998884  456778888887789999999999887777652    321   2222111111     0112


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.+|+|+-...       ...+....+.|+++|+++.+
T Consensus       210 ~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         210 DGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             CCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence            45888875322       24568889999999999865

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN02494 adenosylhomocysteinase

Probab=92.76  E-value=1.2  Score=42.49  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             HHHHHhcCC-CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDV-KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +-+.+...+ -.|.+|+-+|+|. |......++..|++|+++|.++.....+...    |.    .+.  +..+.   -.
T Consensus       242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~vv--~leEa---l~  308 (477)
T PLN02494        242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QVL--TLEDV---VS  308 (477)
T ss_pred             HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----eec--cHHHH---Hh
Confidence            334444333 4688999999995 5544555555688999999998654443221    21    111  22121   13


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..|+|+..-.     +..-+..+....+||||.++.+
T Consensus       309 ~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        309 EADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             hCCEEEECCC-----CccchHHHHHhcCCCCCEEEEc
Confidence            4698887332     2222347788899999999864

>PLN02740 Alcohol dehydrogenase-like

Probab=92.69  E-value=1.2  Score=41.68  Aligned_cols=99  Identities=19%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-----CCC-C-CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-----FLK-M-PF  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~~~-~-~~  186 (359)
                      ....+.++.+||=+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...     ..+ + ..
T Consensus       192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIREM  264 (381)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHHH
Confidence            345678899999999874 5566777777777 699999999988887653    321   122111     100 0 01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ..+.+|+|+-.-.      -...+......+++| |+++++.
T Consensus       265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEc
Confidence            1225888876432      224677788889997 9988753

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=92.64  E-value=1.2  Score=39.35  Aligned_cols=96  Identities=18%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA  194 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  194 (359)
                      ...+.++.+||-.|||. |..+..+++..+++ |++++.+++..+.+++.    +....+.....+    ......+|+|
T Consensus        92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~----~~~~~~~d~v  163 (277)
T cd08255          92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTAD----EIGGRGADVV  163 (277)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccchh----hhcCCCCCEE
Confidence            45677889999998864 66667777766777 99999999988776653    211111100000    1123468888


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +....      ....+....+.|+++|.++..
T Consensus       164 l~~~~------~~~~~~~~~~~l~~~g~~~~~  189 (277)
T cd08255         164 IEASG------SPSALETALRLLRDRGRVVLV  189 (277)
T ss_pred             EEccC------ChHHHHHHHHHhcCCcEEEEE
Confidence            75321      123677888999999999865

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=92.52  E-value=1.8  Score=39.48  Aligned_cols=97  Identities=21%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             cCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194          118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAY  195 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~  195 (359)
                      ..+.++.+||-.||| .|..+..+++..|.+|++++.++...+.+++.    +..   .++..+-.... -..+.+|+++
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~vi  230 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADVIL  230 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCEEE
Confidence            567788899999987 56677777777788999999999888776432    211   11111110000 0124588887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....      ....+..+.+.|+++|.++...
T Consensus       231 ~~~~------~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         231 VTVV------SGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             ECCC------cHHHHHHHHHhcccCCEEEEEC
Confidence            6422      1246788899999999998753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.31  E-value=0.72  Score=42.56  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M--PFEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~--~~~~~  189 (359)
                      .....++.+||=.|+|. |..+..+++..+++ |++++.+++.++.+++.    |..   .++..+-..   +  .....
T Consensus       155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~  227 (347)
T PRK10309        155 LAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLREL  227 (347)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcCC
Confidence            44667889999998864 55667777777776 78999999888776542    221   111111100   0  01223


Q ss_pred             ccc-eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFD-GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD-~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+| +|+-.-     . -...+....+.|++||+++++.
T Consensus       228 ~~d~~v~d~~-----G-~~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        228 RFDQLILETA-----G-VPQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CCCeEEEECC-----C-CHHHHHHHHHHhhcCCEEEEEc
Confidence            567 544321     1 1357788889999999998864

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=92.26  E-value=0.085  Score=40.83  Aligned_cols=75  Identities=25%  Similarity=0.399  Sum_probs=47.2

Q ss_pred             eEEEEcCCCC-CCCCCCccceEEecccccccCCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194          174 CEVVCGNFLK-MPFEDNHFDGAYSIEATCHAPKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI  248 (359)
Q Consensus       174 i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
                      +++..+|+.+ ++--...||+|+... +.--.++    .++++++.++++|||.+.-+.                     
T Consensus        33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------------   90 (124)
T PF05430_consen   33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS---------------------   90 (124)
T ss_dssp             EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred             EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence            4566666644 121126788888754 2222233    589999999999999887421                     


Q ss_pred             hcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          249 ERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                                ....+++.|+++||.+.+...+
T Consensus        91 ----------~a~~Vr~~L~~aGF~v~~~~g~  112 (124)
T PF05430_consen   91 ----------SAGAVRRALQQAGFEVEKVPGF  112 (124)
T ss_dssp             -----------BHHHHHHHHHCTEEEEEEE-S
T ss_pred             ----------chHHHHHHHHHcCCEEEEcCCC
Confidence                      1247889999999999876554

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=92.25  E-value=1.6  Score=39.82  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=64.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~  189 (359)
                      ....+.++.+||-+|+|. |..+..+++..+++ +++++.+++..+.+++.    +..   .++..+-.+.    .....
T Consensus       153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~  225 (334)
T cd08234         153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY  225 (334)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC
Confidence            445677889999998652 55666777766776 89999998887776443    221   2222111110    01235


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+++....      ....+.++.+.|+++|+++...
T Consensus       226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence            6899886421      1356788899999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.16  E-value=1.6  Score=40.01  Aligned_cols=123  Identities=13%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEA  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~  199 (359)
                      ..+++|+-||.|.+..-+....---+.++|+++..++.-+.+...      ..+...|+....   +....+|+++...-
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence            468999999999999877764223567899999998887776532      356667776543   11117899987654


Q ss_pred             cccc---------CCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          200 TCHA---------PKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       200 l~~~---------~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      -..+         .|.    ---+.++...++|  .+++.|-+..            ++..        .-...+.+.+.
T Consensus        77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g------------l~~~--------~~~~~~~i~~~  134 (328)
T COG0270          77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG------------LLSS--------KGQTFDEIKKE  134 (328)
T ss_pred             CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch------------HHhc--------CchHHHHHHHH
Confidence            3332         122    2345566667788  5555553322            1111        12245789999


Q ss_pred             HHhCCCe
Q 018194          267 AKRVGFE  273 (359)
Q Consensus       267 l~~aGF~  273 (359)
                      |++.||.
T Consensus       135 L~~~GY~  141 (328)
T COG0270         135 LEELGYG  141 (328)
T ss_pred             HHHcCCc
Confidence            9999996

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=92.02  E-value=1.9  Score=39.47  Aligned_cols=99  Identities=21%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~  188 (359)
                      ....+.++.+||-.|+|. |..+..+++..+.+|+++..+++..+.+++.    +..   +++...-.++      ..+.
T Consensus       153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~  225 (337)
T cd08261         153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD---DTINVGDEDVAARLRELTDG  225 (337)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC---EEecCcccCHHHHHHHHhCC
Confidence            345677889999998764 6677788887789999998888887776443    211   2221111110      0123


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+|+++....      -...+..+.+.|+++|.++...
T Consensus       226 ~~vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         226 EGADVVIDATG------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence            45898876531      1345788899999999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=91.92  E-value=0.18  Score=46.80  Aligned_cols=63  Identities=21%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL-CEVVCGNFLK  183 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~  183 (359)
                      .++|..|.|+-||.|-++..++.. +|.|++.|.++++++..+..+....+.+. ++....|+.+
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            457899999999999999998885 69999999999999999998876665554 7777777654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.68  E-value=2.9  Score=38.96  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=63.5

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--cCCCC-C-CCCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVC--GNFLK-M-PFEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~  189 (359)
                      ....+.++.+||=.|||. |..+..+++..|+ +|+++|.++..++.+++.    |...-+....  .+..+ + ....+
T Consensus       179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~  254 (368)
T TIGR02818       179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITDG  254 (368)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhCC
Confidence            445678899999999864 5677778887777 799999999988887653    3211011110  00000 0 01123


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      .+|+|+-.-.     . ...+.+..+.+++| |++++..
T Consensus       255 g~d~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       255 GVDYSFECIG-----N-VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CCCEEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEe
Confidence            5787765322     1 34677788899886 9988754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.51  E-value=1.4  Score=40.91  Aligned_cols=97  Identities=15%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEe
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~  196 (359)
                      ...++.+||-.|+|. |..+..+++..++++++++.++.....+.   .+.|..   .++. .+........+.+|+|+-
T Consensus       180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEE
Confidence            345788999999873 66777788877889999988765433221   122321   1111 110011000124788775


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...      -...+.+..+.|++||+++.+.
T Consensus       254 ~~g------~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        254 TVS------AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCC------CHHHHHHHHHHhcCCcEEEEeC
Confidence            322      1236778889999999998753

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=91.47  E-value=2.6  Score=38.74  Aligned_cols=99  Identities=21%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-------M--  184 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-------~--  184 (359)
                      ....+.++.+||-.|+|. |..+..+++..|.+ |+.++.+++..+.+++.    +..   .++..+-.+       +  
T Consensus       156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~  228 (343)
T cd05285         156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE  228 (343)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence            456678899999888764 66777778877777 89999888877766542    221   111111111       0  


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ......+|+|+-...      ....+....+.|+++|+++...
T Consensus       229 ~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         229 LLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             HhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence            122345899886432      1236788899999999988653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.46  E-value=1  Score=41.27  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             HHHhcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CC-CC
Q 018194          114 AVDLIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PF-ED  188 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-~~  188 (359)
                      +....+++++.+||=.|+.  .|.++.+|++..|..++++--+++-.+.+++.    |-..-+.+...|+.+-  .+ ..
T Consensus       134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g  209 (326)
T COG0604         134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELTGG  209 (326)
T ss_pred             HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHcCC
Confidence            3345667889999999854  46688899997776777777777666655543    3222233334433221  11 22


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ..+|+|+-.-.       ...+.+....|+++|+++.+..
T Consensus       210 ~gvDvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         210 KGVDVVLDTVG-------GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCceEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence            36999987443       4556678899999999998643

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=91.43  E-value=0.66  Score=42.61  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M-P-FEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~-~~~~  189 (359)
                      .....++.+||-.|+|. |..+..+++..|.+ +++++.++...+.+++.    +..   .++..+-..   + . .+..
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~~~~~~~~~~~~~~~~~~  226 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTINPKEEDVEKVRELTEGR  226 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEecCccccHHHHHHHhCCC
Confidence            45667888999998765 66777777777776 99999888877665432    221   222111100   0 1 1223


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+++...      .....+..+.+.|+++|+++...
T Consensus       227 ~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         227 GADLVIEAA------GSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence            589887642      12346788899999999988753

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=91.40  E-value=1.3  Score=40.66  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=65.4

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCc
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLK-M-PFEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~  190 (359)
                      ....+.+|.+||=.|+  |.|..+..+++..|++|++++.+++..+.+++.   .|...-+..... +..+ + ....+.
T Consensus       145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence            3456788999999986  456778888887889999999998887777652   232211111111 1111 0 011246


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-...       ...+.+..++|+++|+++.+.
T Consensus       222 vd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         222 IDIYFDNVG-------GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             cEEEEECCC-------HHHHHHHHHHhccCcEEEEec
Confidence            888875321       246788899999999998753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02827 Alcohol dehydrogenase-like

Probab=91.37  E-value=0.94  Score=42.49  Aligned_cols=97  Identities=18%  Similarity=0.298  Sum_probs=60.8

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-----CCCC-C-CCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-----NFLK-M-PFE  187 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~~~-~-~~~  187 (359)
                      ...+.++.+||-.|+|. |..+..+++..|+ .|+++|.++...+.+++.    |..   .++..     +... + ...
T Consensus       188 ~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~~  260 (378)
T PLN02827        188 VADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRMT  260 (378)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHHh
Confidence            34677899999998864 5566677776676 588999999888777543    321   12111     1100 0 011


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~  226 (359)
                      .+.+|+|+-.-.      ....+....+.|++| |+++++
T Consensus       261 ~~g~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        261 GGGADYSFECVG------DTGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             CCCCCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence            225888865332      123567788889998 999875

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.30  E-value=0.87  Score=40.14  Aligned_cols=75  Identities=12%  Similarity=0.012  Sum_probs=48.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      +...+.+.--+.+...++|+|||.|.++..++...      ...++.||-.....+. ..+.........++-+..|+.+
T Consensus         6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~~~~~~R~riDI~d   84 (259)
T PF05206_consen    6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDESEPKFERLRIDIKD   84 (259)
T ss_pred             HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCCCCceEEEEEEeec
Confidence            33444444445677899999999999999998742      4689999986544332 2223222211346677778777


Q ss_pred             CC
Q 018194          184 MP  185 (359)
Q Consensus       184 ~~  185 (359)
                      +.
T Consensus        85 l~   86 (259)
T PF05206_consen   85 LD   86 (259)
T ss_pred             cc
Confidence            64

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.30  E-value=2.1  Score=38.85  Aligned_cols=94  Identities=18%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA  194 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  194 (359)
                      ....+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++    .|... +  .  +.... .....+|++
T Consensus       149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~-~--~--~~~~~-~~~~~~d~v  218 (319)
T cd08242         149 EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET-V--L--PDEAE-SEGGGFDVV  218 (319)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE-E--e--Ccccc-ccCCCCCEE
Confidence            455677889999987652 445555666678899999999988887765    23221 1  1  11111 234568988


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +-...      -...+....+.|+++|.+++
T Consensus       219 id~~g------~~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         219 VEATG------SPSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             EECCC------ChHHHHHHHHHhhcCCEEEE
Confidence            76421      13456788889999999986

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=91.13  E-value=1.3  Score=38.81  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED---NHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~fD~v~~~  197 (359)
                      .|..|+-+| -.-..+..++- ....+|..+|+++..++..++.+++.|+. |++....|..+ |+|+   ..||+.+..
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~-plpe~~~~kFDvfiTD  228 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRN-PLPEDLKRKFDVFITD  228 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcc-cChHHHHhhCCeeecC
Confidence            467899999 33344444443 23469999999999999999999998874 68999999987 5543   689987652


Q ss_pred             ccccccCCHHHHHHHHHhccCCC---CEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPG---SLYVS  225 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~Lkpg---G~l~~  225 (359)
                       ..+.++-...++..=...||.-   |++.+
T Consensus       229 -PpeTi~alk~FlgRGI~tLkg~~~aGyfgi  258 (354)
T COG1568         229 -PPETIKALKLFLGRGIATLKGEGCAGYFGI  258 (354)
T ss_pred             -chhhHHHHHHHHhccHHHhcCCCccceEee
Confidence             2223333455666666677765   66665

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.04  E-value=3.2  Score=39.17  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-CC--CCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCG---NFLK-MP--FED  188 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~  188 (359)
                      ...+.++.+||=.|+|. |..+..+++..|++ ++.+|.++..++.+++.    |..   .+...   +..+ +.  ...
T Consensus       180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~~  252 (393)
T TIGR02819       180 TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILGE  252 (393)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcCC
Confidence            35677888988888863 55666777766765 56678888888877653    321   12111   1100 00  122


Q ss_pred             CccceEEecccccc--------cCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCH--------APKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ..+|+|+-.-....        ..+....+++..+++++||+++++-.
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            35888875433110        01224588999999999999998654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=91.02  E-value=0.84  Score=37.99  Aligned_cols=88  Identities=7%  Similarity=0.085  Sum_probs=52.1

Q ss_pred             CEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCC---------CCCCcc
Q 018194          124 DRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGL--DSLCEVVCGNFLKMP---------FEDNHF  191 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~---------~~~~~f  191 (359)
                      ..|+.+|||--.....+.... +..++-+|. |++++.-++..++.+.  +.+.+++..|+.+..         +..+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            489999999888777777643 667888887 5666665555554421  124568999998632         223445


Q ss_pred             ceEEecccccccC--CHHHHHHH
Q 018194          192 DGAYSIEATCHAP--KLEDVYAE  212 (359)
Q Consensus       192 D~v~~~~~l~~~~--~~~~~l~~  212 (359)
                      -++++-.++.+++  +...+|+.
T Consensus       159 tl~i~Egvl~Yl~~~~~~~ll~~  181 (183)
T PF04072_consen  159 TLFIAEGVLMYLSPEQVDALLRA  181 (183)
T ss_dssp             EEEEEESSGGGS-HHHHHHHHHH
T ss_pred             eEEEEcchhhcCCHHHHHHHHHH
Confidence            5777777888875  23344443

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=90.89  E-value=0.21  Score=44.83  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=38.0

Q ss_pred             CeEEEEcCCCCC--CCCCCccceEEecccccc------c----------CCHHHHHHHHHhccCCCCEEEEE
Q 018194          173 LCEVVCGNFLKM--PFEDNHFDGAYSIEATCH------A----------PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       173 ~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~~------~----------~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..++++|+.+.  .+++++||+|++.-....      .          .-....+.++.++|||||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            346788888774  366788999998532210      0          01257889999999999999874

>cd08293 PTGR2 Prostaglandin reductase

Probab=90.71  E-value=3.4  Score=37.88  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=62.2

Q ss_pred             hcCCCCC--CEEEEECC--CCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC
Q 018194          117 LIDVKAG--DRILDVGC--GVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PF  186 (359)
Q Consensus       117 ~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~  186 (359)
                      ...+.++  .+||=.|+  |.|..+..+++..|+ +|++++.+++..+.+++.   .|..   .++..+-.++     ..
T Consensus       147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~  220 (345)
T cd08293         147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLREL  220 (345)
T ss_pred             hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHH
Confidence            3345555  89998886  467788888887787 899999998877766553   2322   1222111111     01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|+|+-...     .  ..+.+..++|+++|+++.+.
T Consensus       221 ~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         221 CPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             CCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence            1246898875322     2  23578889999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.66  E-value=1.8  Score=40.78  Aligned_cols=87  Identities=21%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..|.+|+=+|+|. |......++..|++|+++|.++.....+..    .|.    .+.  +..+. .  ...|+|+..- 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVItaT-  258 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITAT-  258 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEECC-
Confidence            4688999999996 666666666678999999999865433332    121    221  22221 1  3468887632 


Q ss_pred             ccccCCHHHHHH-HHHhccCCCCEEEEE
Q 018194          200 TCHAPKLEDVYA-EVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 l~~~~~~~~~l~-~~~~~LkpgG~l~~~  226 (359)
                           ....++. +....+|||++++..
T Consensus       259 -----G~~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       259 -----GNKDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             -----CCHHHHHHHHHhcCCCCcEEEEE
Confidence                 2234454 488899999998864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.61  E-value=0.51  Score=44.07  Aligned_cols=100  Identities=18%  Similarity=0.117  Sum_probs=55.6

Q ss_pred             CCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|+=+|+| .|..+...+...|++|+.+|.++..++.+....   +  ..+.....+..++.-.-..+|+|+..-..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            45679999998 355666666666889999999987766554332   1  11111111111111011367999875422


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...+.+.-+-++..+.+|||+.++-.
T Consensus       241 ~g~~~p~lit~~~l~~mk~g~vIvDv  266 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPGAVIVDV  266 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence            11111222235666778999887753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.57  E-value=0.52  Score=44.02  Aligned_cols=63  Identities=14%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             cCCCCCeEEEEcCCCCCC--CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          168 AGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       168 ~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      .++ ++++++++++.+..  .+++++|.++......+++  +..+.++++.+.++|||++++-.....
T Consensus       272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            344 68999999998742  5679999999999999987  467899999999999999998654444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.56  E-value=7.6  Score=36.07  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LK-M-PFEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~-~-~~~~~  189 (359)
                      ....+.++.+||=+|+|. |..+..+++..|+ +|+++|.++...+.+++.    |...-+.....+.  .+ + .....
T Consensus       178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~  253 (365)
T cd08277         178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTGG  253 (365)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhCC
Confidence            345677899999998763 5566667776777 799999999888877542    3211011111000  00 0 01124


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      .+|+|+-.-.     . ...+....+.|+|+ |+++++.
T Consensus       254 g~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         254 GVDYSFECTG-----N-ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             CCCEEEECCC-----C-hHHHHHHHHhcccCCCEEEEEc
Confidence            5888875321     1 34677888899886 9998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=90.44  E-value=2.6  Score=38.68  Aligned_cols=96  Identities=18%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             cCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194          118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN  189 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  189 (359)
                      ....++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++.    +..   .++...-.+.      ..+.+
T Consensus       163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT---DIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc---EEEcCCcchHHHHHHHHcCCC
Confidence            456678899998775 36677777776675 889998888777665543    211   1221111110      01235


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+++....      ....+.+..+.|+++|+++..
T Consensus       236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEE
Confidence            6898875422      124778889999999998865

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=90.43  E-value=3.5  Score=37.98  Aligned_cols=99  Identities=22%  Similarity=0.275  Sum_probs=63.2

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  187 (359)
                      ....++++.+||-.|+| .|..+..+++..|. .++++|.+++..+.+++    .|..   .++..+-.+.     . ..
T Consensus       160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~  232 (351)
T cd08285         160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTG  232 (351)
T ss_pred             HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhC
Confidence            34567788999999876 35566777776677 69999999888777664    2321   1221111111     0 12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-...      ....+..+.+.|+++|+++.+.
T Consensus       233 ~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         233 GKGVDAVIIAGG------GQDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCCCcEEEECCC------CHHHHHHHHHHhhcCCEEEEec
Confidence            346888875322      1356788999999999998653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.42  E-value=2.5  Score=40.12  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .|.+|+=+|+|. |......++..|++|+.+|.++.....+..    .|    ..+  .++.+.   ...+|+|+..-  
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT--  275 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT--  275 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence            688999999985 444444455568899999999876544322    12    121  122221   13579987643  


Q ss_pred             cccCCHHHHHH-HHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYA-EVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~-~~~~~LkpgG~l~~~  226 (359)
                         .+ ..++. +....+|+|++++..
T Consensus       276 ---G~-~~vI~~~~~~~mK~GailiNv  298 (425)
T PRK05476        276 ---GN-KDVITAEHMEAMKDGAILANI  298 (425)
T ss_pred             ---CC-HHHHHHHHHhcCCCCCEEEEc
Confidence               12 33554 688999999998864

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.38  E-value=3.5  Score=34.16  Aligned_cols=87  Identities=13%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             HHHhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          114 AVDLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      +........+.+||-+|.= +|.....+... .++|+.+|+.|.|-..         ++++++|..+    +.++.+.+|
T Consensus        36 i~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~D  101 (254)
T COG4017          36 IRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVD  101 (254)
T ss_pred             hhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCcee
Confidence            3333444567899999985 67777666654 5899999999987543         4667777665    334568899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCC
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPG  220 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  220 (359)
                      +|+-.-.+.-+. +     +..+-+.|+
T Consensus       102 livDlTGlGG~~-P-----e~L~~fnp~  123 (254)
T COG4017         102 LIVDLTGLGGIE-P-----EFLAKFNPK  123 (254)
T ss_pred             EEEeccccCCCC-H-----HHHhccCCc
Confidence            999877776653 2     344556775

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.35  E-value=4.3  Score=39.67  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-C-CCCccce
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-----RANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMP-F-EDNHFDG  193 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~-~-~~~~fD~  193 (359)
                      |+..|.|..||+|.+.....+..     ...++|.+..+.+...++....-.+... ......+|....+ + ....||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            66799999999999886544321     1479999999999999988754444321 2233334433211 1 2345777


Q ss_pred             EEecccc--------------------cc-cC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEAT--------------------CH-AP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l--------------------~~-~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+++-..                    .| ++    .-..++..+..+|++||+..++
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI  354 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV  354 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence            7654321                    11 11    1236778888999999986654

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.31  E-value=2.8  Score=36.59  Aligned_cols=89  Identities=15%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      .+.+|+..+|+|+-.|+++..|.++ +..|+++|..+-.-..    . .   .+.|+....|-..........|..+|..
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL----~-d---tg~v~h~r~DGfk~~P~r~~idWmVCDm  278 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSL----M-D---TGQVTHLREDGFKFRPTRSNIDWMVCDM  278 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhh----h-c---ccceeeeeccCcccccCCCCCceEEeeh
Confidence            4568999999999999999999986 6799999975432111    1 1   2457777888777643356789888866


Q ss_pred             cccccCCHHHHHHHHHhccCCC
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPG  220 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~Lkpg  220 (359)
                      +    ..+..+-.-+...|..|
T Consensus       279 V----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         279 V----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             h----cCcHHHHHHHHHHHHcc
Confidence            4    44555555555555544

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.26  E-value=7.6  Score=34.87  Aligned_cols=153  Identities=11%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcC------C--------------CCCeEEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAG------L--------------DSLCEVV  177 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~------~--------------~~~i~~~  177 (359)
                      .....|+.+|||.-.+...|...   ....++=+|.++..............      +              .++....
T Consensus        86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~  165 (335)
T KOG2918|consen   86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI  165 (335)
T ss_pred             CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence            44568999999999888777663   33577778887665544411111000      0              0122233


Q ss_pred             EcCCCCCC----------CCCCccceEEecccccccC-C-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194          178 CGNFLKMP----------FEDNHFDGAYSIEATCHAP-K-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII  245 (359)
Q Consensus       178 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~-~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  245 (359)
                      -.|+.++.          ...+-.-++++--+|.+++ + -..+++.+......+ .++.+|-..+     . .....++
T Consensus       166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a-~fv~YEQi~~-----~-D~Fg~vM  238 (335)
T KOG2918|consen  166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENA-HFVNYEQINP-----N-DRFGKVM  238 (335)
T ss_pred             ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcc-cEEEEeccCC-----C-ChHHHHH
Confidence            33333221          0011122344444566664 2 235566666555544 4444443321     1 1111222


Q ss_pred             hhhhcCC-----CCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          246 QGIERGD-----ALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       246 ~~~~~~~-----~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ..-....     +...+.+.+..++.+.++||+.+...++
T Consensus       239 ~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  239 LANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             HHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence            1111111     2224668889999999999999988776

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=90.21  E-value=3.7  Score=38.19  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-C----CCC-C-CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-N----FLK-M-PF  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d----~~~-~-~~  186 (359)
                      ....++++.+||=.|+|. |..+..+++..|+ .|+++|.++..++.+++.    |..   .++.. +    +.+ . ..
T Consensus       180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~~  252 (368)
T cd08300         180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVEM  252 (368)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHHH
Confidence            345678899999998763 5566777777777 799999999988877542    321   12211 1    100 0 01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ..+.+|+|+-.-.      -...+....+.|+++ |+++++.
T Consensus       253 ~~~g~d~vid~~g------~~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         253 TDGGVDYTFECIG------NVKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             hCCCCcEEEECCC------ChHHHHHHHHhhccCCCeEEEEc
Confidence            1236888875321      134677788899997 9988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.14  E-value=5.8  Score=35.74  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=62.5

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC------
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMP------  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~------  185 (359)
                      .....+.||.++.-+|+|. |....+-++..| .+++|+|++++-.+.|++.    |..   +|+.. |..+ |      
T Consensus       185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~-~i~evi~  256 (375)
T KOG0022|consen  185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKK-PIQEVII  256 (375)
T ss_pred             hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccc-cHHHHHH
Confidence            3445678899999999986 434444455434 6999999999999998865    222   33322 2322 2      


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEEee
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYEWV  229 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  229 (359)
                       .-++.+|.-+-  .+    -..+++++.....+.| |.-+++-..
T Consensus       257 EmTdgGvDysfE--c~----G~~~~m~~al~s~h~GwG~sv~iGv~  296 (375)
T KOG0022|consen  257 EMTDGGVDYSFE--CI----GNVSTMRAALESCHKGWGKSVVIGVA  296 (375)
T ss_pred             HHhcCCceEEEE--ec----CCHHHHHHHHHHhhcCCCeEEEEEec
Confidence             12355555432  22    1245677778888888 887775433

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=89.73  E-value=3.4  Score=37.65  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=65.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC-----
Q 018194          113 MAVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-KM-----  184 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~-----  184 (359)
                      ......+.++|.+|.-+|||. |..+..-|+..+ .+++++|+++.-++.|++.-.       .+++...-. +.     
T Consensus       176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA-------T~~vn~~~~~~vv~~i~  248 (366)
T COG1062         176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA-------THFVNPKEVDDVVEAIV  248 (366)
T ss_pred             HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC-------ceeecchhhhhHHHHHH
Confidence            345567788999999999985 555555555444 599999999999999887532       233332211 00     


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ...++..|.++-     ..-+ ...++.....+.++|..+++-.
T Consensus       249 ~~T~gG~d~~~e-----~~G~-~~~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         249 ELTDGGADYAFE-----CVGN-VEVMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             HhcCCCCCEEEE-----ccCC-HHHHHHHHHHHhcCCeEEEEec
Confidence            122234555532     1222 3377888888888999988643

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.65  E-value=5.5  Score=36.83  Aligned_cols=93  Identities=24%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCC
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--------P-FEDN  189 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------~-~~~~  189 (359)
                      .++.+||=.|+|. |..+..+++..++ +|++++.++...+.+++    .|..   .++..+-...        . ....
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~  248 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGR  248 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCC
Confidence            4788898888752 4556667777788 99999998887766543    2322   1211111100        0 1224


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+-...      ....+....+.|+++|+++.+
T Consensus       249 ~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         249 GADVVIEASG------HPAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCcEEEECCC------ChHHHHHHHHHhccCCEEEEE
Confidence            6898875421      134567888999999999875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=89.60  E-value=1.1  Score=37.97  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ++.+.+.+..+.-...-|.+||.|.|+.++.+....-.+...+++++..+.-.+-..+..  +.+..++++|+...
T Consensus        37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence            345667777776677899999999999999998753457888888887776655544433  34677777877653

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=89.58  E-value=0.96  Score=44.09  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCC
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FED  188 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  188 (359)
                      -+.++..|||+||..|.|..-.++.  .+.-|+|+|+-|.-.            .++|.-.+.|+....        ...
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp------------~~~c~t~v~dIttd~cr~~l~k~l~t  108 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP------------IPNCDTLVEDITTDECRSKLRKILKT  108 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc------------CCccchhhhhhhHHHHHHHHHHHHHh
Confidence            4567889999999999999877774  457999999866321            234444455554311        112


Q ss_pred             CccceEEeccccc----ccCC-------HHHHHHHHHhccCCCCEEEEEEeeeCcccc
Q 018194          189 NHFDGAYSIEATC----HAPK-------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYE  235 (359)
Q Consensus       189 ~~fD~v~~~~~l~----~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  235 (359)
                      -..|+|+...+-.    +..|       ....|+-....|..||.++ ...+.+..|.
T Consensus       109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvfrs~dy~  165 (780)
T KOG1098|consen  109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVFRSEDYN  165 (780)
T ss_pred             CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-cccccCCcch
Confidence            2347766544311    1111       1245566677889999954 3444444333

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.45  E-value=1.9  Score=39.49  Aligned_cols=97  Identities=16%  Similarity=0.076  Sum_probs=61.2

Q ss_pred             cCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccce
Q 018194          118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDG  193 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~  193 (359)
                      +.+.++.+||=.|+|. |..+..+++..|.+++.++.+++.++.+++.    |..   .++...-.+..   .....+|+
T Consensus       159 ~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~d~  231 (333)
T cd08296         159 SGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGAKL  231 (333)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCCCE
Confidence            4677888999999653 5566667777788999999998877776442    321   12211111110   01134788


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++....      ....+..+.+.|+++|.++...
T Consensus       232 vi~~~g------~~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         232 ILATAP------NAKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             EEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence            875311      1346788899999999998753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=89.02  E-value=2.3  Score=39.49  Aligned_cols=106  Identities=22%  Similarity=0.255  Sum_probs=69.3

Q ss_pred             CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCCC---------------
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG-LDSLCEVVCGNFLKMP---------------  185 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~---------------  185 (359)
                      +.++||.+|+.+.....+++. .-.+--|+++..+.+..+.......+ ...+..+..+|+...+               
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~  260 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF  260 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence            469999999999999888874 22456677888887777665443311 2224555555554332               


Q ss_pred             --------------CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          186 --------------FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       186 --------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                                    ++..++|.   +.+..|+++...++......++|+|.+.+.+....
T Consensus       261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~  317 (364)
T KOG1269|consen  261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG  317 (364)
T ss_pred             hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence                          11222333   34555666667788899999999999998765553

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.91  E-value=3.6  Score=37.42  Aligned_cols=95  Identities=22%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA  194 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  194 (359)
                      ....+.++.+||=.|||. |..+..+++..+.+|+.++.++...+.+++    .|..   .+...  ...  +...+|++
T Consensus       161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~--~~~~vD~v  229 (329)
T cd08298         161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL--PPEPLDAA  229 (329)
T ss_pred             HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc--CCCcccEE
Confidence            455677888888887763 445555667678899999998877666643    2321   11111  111  23468887


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +....      ....+..+.+.|+++|.++...
T Consensus       230 i~~~~------~~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         230 IIFAP------VGALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEcCC------cHHHHHHHHHHhhcCCEEEEEc
Confidence            65321      1246888999999999999754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=88.86  E-value=5.2  Score=37.94  Aligned_cols=101  Identities=18%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             cCCCCCCEEEEEC-CC-CChHHHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHc----CCCCCeEEEEcCC-CCCC--
Q 018194          118 IDVKAGDRILDVG-CG-VGGPMRAIAAHSR---ANVVGITINEYQVNRARLHNKKA----GLDSLCEVVCGNF-LKMP--  185 (359)
Q Consensus       118 ~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~~~----~~~~~i~~~~~d~-~~~~--  185 (359)
                      ..++++.+||=+| +| .|..+..+++..+   .+|+++|.++..++.+++.....    |.  ...++...- .++.  
T Consensus       171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~  248 (410)
T cd08238         171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHAT  248 (410)
T ss_pred             cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHH
Confidence            4567888999897 34 5777777887643   27999999999999887742110    10  011121100 1110  


Q ss_pred             ----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 ----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                          .....+|+|+....      ....+....+.++++|.+++.
T Consensus       249 v~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         249 LMELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence                12235888776321      135678888999998877653

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=88.85  E-value=1.3  Score=40.78  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-C-CCCCc
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-P-FEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~  190 (359)
                      ....+.++.+||=.|+| .|..+..+++..++ .|++++.+++..+.+++.    +...-+.....++.+ + . .....
T Consensus       166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC
Confidence            44567788899988865 24455666776777 899999999888777542    321101111111100 0 0 12234


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-...      ....++.+.+.|+++|.++.+.
T Consensus       242 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         242 VDVSFDCAG------VQATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCEEEECCC------CHHHHHHHHHhccCCCEEEEEc
Confidence            888876432      1246788899999999988753

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=88.69  E-value=1.1  Score=41.71  Aligned_cols=97  Identities=15%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  189 (359)
                      ...+.++.+||-.|+|. |..+..+++..|. .++++|.++...+.+++.    +..   .++..+-.+.     .....
T Consensus       181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~~~~~~~~~v~~~~~~  253 (365)
T cd08278         181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINPKEEDLVAAIREITGG  253 (365)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecCCCcCHHHHHHHHhCC
Confidence            34567889999998753 5677777777777 699999998887766542    211   2221111110     01134


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+-...     . ...+..+.+.|+++|+++.+
T Consensus       254 ~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         254 GVDYALDTTG-----V-PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCcEEEECCC-----C-cHHHHHHHHHhccCCEEEEe
Confidence            5888875321     1 24577889999999998875

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.67  E-value=6.2  Score=36.72  Aligned_cols=99  Identities=19%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CC-----CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL--KM-----PF  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~-----~~  186 (359)
                      ....+.++.+||=.|+|. |..+..+++..++ +|+++|.+++.++.+++.    |..   .++..+-.  ..     ..
T Consensus       181 ~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~~~  253 (369)
T cd08301         181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIAEM  253 (369)
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHHHH
Confidence            345677899999998763 5566667776777 799999999888877542    321   12211100  00     01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ..+.+|+++-.-.      ....+....+.+++| |++++..
T Consensus       254 ~~~~~d~vid~~G------~~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         254 TGGGVDYSFECTG------NIDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             hCCCCCEEEECCC------ChHHHHHHHHHhhcCCCEEEEEC
Confidence            1235787764321      134667778889996 9988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.64  E-value=6.1  Score=36.62  Aligned_cols=96  Identities=18%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEec
Q 018194          120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~  197 (359)
                      ..++.+||-.|+|. |..+..+++..|+++++++.+++....+.+.   .|..   .++. .+...+.-....+|+|+-.
T Consensus       178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~  251 (357)
T PLN02514        178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDT  251 (357)
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEEC
Confidence            35788999887753 5666777887788899998887765544332   2321   1111 1100010001247777643


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -.      ....+..+.+.|++||+++.+.
T Consensus       252 ~g------~~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        252 VP------VFHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CC------chHHHHHHHHHhccCCEEEEEC
Confidence            21      1246777889999999998753

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.93  E-value=9.8  Score=32.61  Aligned_cols=102  Identities=23%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  188 (359)
                      .+.+||-.|++ |.++..+++   ..|.+|++++-++...+...+.....   .++.++.+|+.+..     +.     -
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35689988886 444444443   24789999999887766554443322   25788899987632     00     1


Q ss_pred             CccceEEecccccccC---C--------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAP---K--------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +..|.++.........   +              ...+++.+...++++|.+++..
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3467777655332111   1              1234566667778888877653

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.86  E-value=4.8  Score=35.96  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .|..||==|.|.|.   .+.++|++ +++++..|+++...+.-.+..++.|   +++...+|+.+..          -.-
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            46788888888774   55555664 6899999999988887777776654   6899999998743          123


Q ss_pred             CccceEEeccccccc
Q 018194          189 NHFDGAYSIEATCHA  203 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~  203 (359)
                      +..|+++.+..+-+.
T Consensus       113 G~V~ILVNNAGI~~~  127 (300)
T KOG1201|consen  113 GDVDILVNNAGIVTG  127 (300)
T ss_pred             CCceEEEeccccccC
Confidence            678888887766543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.57  E-value=3.4  Score=31.12  Aligned_cols=84  Identities=21%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             CCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEeccccccc
Q 018194          131 CGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       131 cG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~  203 (359)
                      ||.|..+..+++.   .+..|+.+|.+++.++.+++.        .+.++.+|..+..    ..-...|.|++...   -
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---~   72 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD---D   72 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS---S
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC---C
Confidence            5667788877762   334899999999998877654        2689999998743    22356777776432   0


Q ss_pred             CCHHHHHHHHHhccCCCCEEEE
Q 018194          204 PKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       204 ~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +.....+....+.+.|...++.
T Consensus        73 d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   73 DEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCeEEE
Confidence            1223344455666778888776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=87.22  E-value=2  Score=38.57  Aligned_cols=97  Identities=16%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCE--EEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194          104 RDATRLHEEMAVDLIDVKAGDR--ILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN  180 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~--vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d  180 (359)
                      +.-.-.+++.++..-+...+..  =+|||.|+-.+-..+.. ..+....++|++...+..|+....+.++...+.+++..
T Consensus        82 R~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~  161 (419)
T KOG2912|consen   82 RLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVE  161 (419)
T ss_pred             chhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEec
Confidence            3333444444444444333333  47888887654444432 35678999999999999999999999988888888775


Q ss_pred             CCCCC-------CCCCccceEEecccc
Q 018194          181 FLKMP-------FEDNHFDGAYSIEAT  200 (359)
Q Consensus       181 ~~~~~-------~~~~~fD~v~~~~~l  200 (359)
                      ..+.-       .++..||.+.|+-.+
T Consensus       162 ~~ktll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  162 PQKTLLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             chhhcchhhhccCccceeeEEecCCch
Confidence            43321       224458888776543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=87.13  E-value=2.5  Score=39.55  Aligned_cols=94  Identities=19%  Similarity=0.137  Sum_probs=56.6

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEec
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQ-VNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~  197 (359)
                      .++.+||-.|+|. |..+..+++..|++|++++.+++. .+.+++    .|..   .++. .+.....-..+.+|+|+-.
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~v~~~~~~~D~vid~  249 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGAD---SFLVTTDSQKMKEAVGTMDFIIDT  249 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCc---EEEcCcCHHHHHHhhCCCcEEEEC
Confidence            4788999998863 567777788778899999987653 344332    3321   1111 1100000001247877653


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -.      ....+....+.+++||.++.+.
T Consensus       250 ~G------~~~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        250 VS------AEHALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             CC------cHHHHHHHHHhhcCCCEEEEEc
Confidence            21      2346778889999999998764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.06  E-value=13  Score=37.23  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=56.0

Q ss_pred             CEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEe
Q 018194          124 DRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYS  196 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~  196 (359)
                      .+|+=+|+|  ..+..+++   ..+.+++.+|.+++.++.+++.    |    ...+.+|+.+..    ..-+..|++++
T Consensus       401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            456666655  45555554   2467999999999999887642    2    578999998743    22346777766


Q ss_pred             cccccccCCHH--HHHHHHHhccCCCCEEEE
Q 018194          197 IEATCHAPKLE--DVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       197 ~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~  225 (359)
                      ..     +|.+  ..+-...|.+.|...++.
T Consensus       471 ~~-----~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        471 TC-----NEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             Ee-----CCHHHHHHHHHHHHHHCCCCeEEE
Confidence            43     3332  233344566788888876

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=86.75  E-value=6.9  Score=35.36  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .+.+|+=+|+|. |......++..|++|+.+|.++...+.++.    .+    .++..  ..++...-..+|+|+..-  
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~~--~~~l~~~l~~aDiVI~t~--  218 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPFH--LSELAEEVGKIDIIFNTI--  218 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceeec--HHHHHHHhCCCCEEEECC--
Confidence            578999999974 333444444568899999999876555432    22    22221  111111124689998852  


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                         |. ..+-+++.+.++||+.++-
T Consensus       219 ---p~-~~i~~~~l~~~~~g~vIID  239 (296)
T PRK08306        219 ---PA-LVLTKEVLSKMPPEALIID  239 (296)
T ss_pred             ---Ch-hhhhHHHHHcCCCCcEEEE
Confidence               21 1233567788999887663

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=86.64  E-value=4.9  Score=37.70  Aligned_cols=100  Identities=16%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             cCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCC
Q 018194          118 IDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG---NFLK-M-P-FEDN  189 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~-~-~~~~  189 (359)
                      ..+.++.+||=.|+|. |..+..+++..|+ .|++++.++...+.+++    .|...-+.....   +..+ + . .+..
T Consensus       199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~  274 (384)
T cd08265         199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW  274 (384)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC
Confidence            4677888998887753 4455666776677 79999998886655554    232211111110   1000 0 0 1234


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+...     .+....+..+.+.|+++|+++..
T Consensus       275 gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         275 GADIQVEAA-----GAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEE
Confidence            589887642     23345678889999999999875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=86.46  E-value=0.47  Score=39.99  Aligned_cols=94  Identities=19%  Similarity=0.280  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--  185 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--  185 (359)
                      .+.+.++..+...++...+|.--|.|..+..+.+ .+..+++++|-+|-.-+.|+-...+. .++.+..+.+++..++  
T Consensus        30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l  108 (303)
T KOG2782|consen   30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSL  108 (303)
T ss_pred             eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHH
Confidence            3456778888888999999999999998887776 57789999999999888887766432 2333444444444432  


Q ss_pred             -----CCCCccceEEeccccccc
Q 018194          186 -----FEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       186 -----~~~~~fD~v~~~~~l~~~  203 (359)
                           +.+.++|-|++......+
T Consensus       109 ~~~~gl~~~~vDGiLmDlGcSSM  131 (303)
T KOG2782|consen  109 IADTGLLDVGVDGILMDLGCSSM  131 (303)
T ss_pred             HHHhCCCcCCcceEEeecCcccc
Confidence                 456889998876654443

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=86.41  E-value=1.1  Score=40.76  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=74.2

Q ss_pred             EEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEeccccc
Q 018194          125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIEATC  201 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~  201 (359)
                      +++|+-||.|.++.-+.+..--.+.++|+++..++.-+.++.        ....+|+.++.   ++. .+|+++....-.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence            799999999999988877522478899999999888877753        67788888865   443 589988754322


Q ss_pred             cc---------CC----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          202 HA---------PK----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       202 ~~---------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      -+         .|    +-..+-++.+.++|  .+++.|-+..-. .....                  .....+.+.|+
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~-~~~~~------------------~~~~~i~~~l~  131 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLL-SSKNG------------------EVFKEILEELE  131 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGG-TGGGH------------------HHHHHHHHHHH
T ss_pred             eEeccccccccccccchhhHHHHHHHhhccc--eEEEecccceee-ccccc------------------ccccccccccc
Confidence            21         12    22233344455788  445545443210 00000                  12357888899


Q ss_pred             hCCCeEEE
Q 018194          269 RVGFEVVK  276 (359)
Q Consensus       269 ~aGF~~i~  276 (359)
                      +.||.+..
T Consensus       132 ~lGY~v~~  139 (335)
T PF00145_consen  132 ELGYNVQW  139 (335)
T ss_dssp             HTTEEEEE
T ss_pred             ccceeehh
Confidence            99998653

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=86.39  E-value=15  Score=35.48  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=53.4

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .|.+|+=+|+|. |......++..|++|+++|.++.....+..    .|    +.+  .++.+.   -...|+|+..-. 
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~leel---l~~ADIVI~atG-  318 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLEDV---VETADIFVTATG-  318 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHHHH---HhcCCEEEECCC-
Confidence            688999999995 444444444468899999988765433322    12    122  122221   245799987532 


Q ss_pred             cccCCHHHHH-HHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVY-AEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l-~~~~~~LkpgG~l~~~  226 (359)
                          . ..++ .+....+|||++++-+
T Consensus       319 ----t-~~iI~~e~~~~MKpGAiLINv  340 (476)
T PTZ00075        319 ----N-KDIITLEHMRRMKNNAIVGNI  340 (476)
T ss_pred             ----c-ccccCHHHHhccCCCcEEEEc
Confidence                1 2234 4788899999999853

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=85.95  E-value=2.1  Score=39.78  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CC
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~  187 (359)
                      ....+.++.+||-.|+| .|..+..+++..+.+ |++++.++...+.+++    .+..   .++..+-.+.     . .+
T Consensus       176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~  248 (363)
T cd08279         176 NTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTD  248 (363)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcC
Confidence            34566788899998875 355667777767775 9999998887766643    2321   2222111110     0 12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+++....      ....+..+.+.|+++|+++...
T Consensus       249 ~~~vd~vld~~~------~~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         249 GRGADYAFEAVG------RAATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CCCCCEEEEcCC------ChHHHHHHHHHhhcCCeEEEEe
Confidence            356888875321      1356788899999999998753

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=85.73  E-value=2.9  Score=33.62  Aligned_cols=54  Identities=15%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             EECCCCC--hHHHHHH--h-hcCCEEEEEeCCHHHHHHHHHH--HHHcCCCCCeEEEEcCC
Q 018194          128 DVGCGVG--GPMRAIA--A-HSRANVVGITINEYQVNRARLH--NKKAGLDSLCEVVCGNF  181 (359)
Q Consensus       128 DiGcG~G--~~~~~l~--~-~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~~~i~~~~~d~  181 (359)
                      |||++.|  .....+.  . .++.+|+++|++|..++..+++  +.-......+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  4444443  2 3567999999999999988888  44332223356665544

; PDB: 2PY6_A.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=85.69  E-value=2.6  Score=37.74  Aligned_cols=74  Identities=15%  Similarity=0.139  Sum_probs=43.5

Q ss_pred             CCCChHHHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCccceEEec
Q 018194          131 CGVGGPMRAIAAH----SRANVVGITINEYQVNRARLHNKKAGLDSLCEV----VCGNFLKMP-----FEDNHFDGAYSI  197 (359)
Q Consensus       131 cG~G~~~~~l~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~----~~~d~~~~~-----~~~~~fD~v~~~  197 (359)
                      .|+|.++..|.++    ...+++.+|.++..+-..++.+....-.+++.+    +.+|+.+..     +....+|+|+-.
T Consensus         5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa   84 (293)
T PF02719_consen    5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA   84 (293)
T ss_dssp             TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred             ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence            4668888777763    236899999999998888777643322234544    488887743     555689999999


Q ss_pred             ccccccC
Q 018194          198 EATCHAP  204 (359)
Q Consensus       198 ~~l~~~~  204 (359)
                      .++-|+|
T Consensus        85 AA~KhVp   91 (293)
T PF02719_consen   85 AALKHVP   91 (293)
T ss_dssp             -----HH
T ss_pred             hhcCCCC
Confidence            9999986

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK05854 short chain dehydrogenase; Provisional

Probab=85.57  E-value=14  Score=33.44  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=49.4

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C------CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----F------ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~------~~  188 (359)
                      .+.++|=.|++.| ++..+++   ..|++|+.++-+++..+.+.+......-..++.++..|+.+..    +      ..
T Consensus        13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            3568887777654 4444443   1478999999888776665554443322235888999997743    0      12


Q ss_pred             CccceEEecccc
Q 018194          189 NHFDGAYSIEAT  200 (359)
Q Consensus       189 ~~fD~v~~~~~l  200 (359)
                      +..|+++.+...
T Consensus        92 ~~iD~li~nAG~  103 (313)
T PRK05854         92 RPIHLLINNAGV  103 (313)
T ss_pred             CCccEEEECCcc
Confidence            468988876654

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=85.46  E-value=5.5  Score=36.51  Aligned_cols=100  Identities=15%  Similarity=0.199  Sum_probs=59.6

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-C-CCCCcc
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-P-FEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~f  191 (359)
                      ...+.++.+||=.|+|. |..+..+++..+ .+|++++.++.....+++.    +...-+.....+... + . .+...+
T Consensus       161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~~  236 (345)
T cd08286         161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRGV  236 (345)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCCC
Confidence            34566788888777642 445556677667 7899999988777666542    321111111111100 0 0 123468


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+|+...     .. ...+..+.+.|+++|.++.+
T Consensus       237 d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         237 DVVIEAV-----GI-PATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence            9887532     22 33578888999999999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK07576 short chain dehydrogenase; Provisional

Probab=85.27  E-value=11  Score=33.01  Aligned_cols=74  Identities=26%  Similarity=0.205  Sum_probs=47.0

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      ++.++|-.|. +|.++..+++   ..|++|++++.++..++...+.....+  .++.++..|+.+..     +     ..
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4668888875 4555555443   247899999998887665544444332  35678888987632     1     01


Q ss_pred             CccceEEecc
Q 018194          189 NHFDGAYSIE  198 (359)
Q Consensus       189 ~~fD~v~~~~  198 (359)
                      +..|+++.+.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            3579988654

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=85.01  E-value=11  Score=34.93  Aligned_cols=96  Identities=18%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             cCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCC
Q 018194          118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM------PFEDN  189 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~  189 (359)
                      ..+.++.+||-.|+| .|..+..+++..+++ +++++.++...+.+++.    +..   .++..+-.+.      ..+..
T Consensus       183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~~~~~~~~~l~~~~~~~  255 (367)
T cd08263         183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNAAKEDAVAAIREITGGR  255 (367)
T ss_pred             ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecCCcccHHHHHHHHhCCC
Confidence            345678888877765 355666667766777 99999988877766432    221   2222211111      01235


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+...     ... ..+..+.+.|+++|+++.+
T Consensus       256 ~~d~vld~v-----g~~-~~~~~~~~~l~~~G~~v~~  286 (367)
T cd08263         256 GVDVVVEAL-----GKP-ETFKLALDVVRDGGRAVVV  286 (367)
T ss_pred             CCCEEEEeC-----CCH-HHHHHHHHHHhcCCEEEEE
Confidence            689887542     221 3678889999999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK08324 short chain dehydrogenase; Validated

Probab=84.99  E-value=8.6  Score=39.22  Aligned_cols=101  Identities=24%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  188 (359)
                      .+++||-.|++ |.++..+++   ..|.+|+++|.++..++.+.+.....   .++.++.+|+.+..     +.     .
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46788888864 344444443   24789999999988776655443321   35788899987632     11     1


Q ss_pred             CccceEEecccccccCC-------------------HHHHHHHHHhccCC---CCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPK-------------------LEDVYAEVFRVLKP---GSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~~~  226 (359)
                      +.+|+|+.+........                   ...+++.+.+.+++   ||.++++
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v  556 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI  556 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            36899887765432110                   23456666777766   6777764

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=84.75  E-value=4.5  Score=36.22  Aligned_cols=97  Identities=23%  Similarity=0.258  Sum_probs=61.2

Q ss_pred             hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194          117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED  188 (359)
Q Consensus       117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~  188 (359)
                      ...+.++.+||-.||  +.|..+..+++..|++|++++.++...+.+++.    +..   .+...+-.+..      .+.
T Consensus       134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~i~~~~~~  206 (323)
T cd08241         134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GAD---HVIDYRDPDLRERVKALTGG  206 (323)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCc---eeeecCCccHHHHHHHHcCC
Confidence            445677899999998  345566677777788999999998877766432    221   11111111110      123


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+|+++....       ...+..+.+.++++|.++...
T Consensus       207 ~~~d~v~~~~g-------~~~~~~~~~~~~~~g~~v~~~  238 (323)
T cd08241         207 RGVDVVYDPVG-------GDVFEASLRSLAWGGRLLVIG  238 (323)
T ss_pred             CCcEEEEECcc-------HHHHHHHHHhhccCCEEEEEc
Confidence            45888876432       134566788999999988653

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=84.69  E-value=1.8  Score=41.26  Aligned_cols=108  Identities=18%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCccce
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-------PFEDNHFDG  193 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~fD~  193 (359)
                      .+.++|-+|-|.|.+...+.. .+..++++++++|.|++.|++.+.-..-. +..+...|..+.       .-.+..||+
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence            345788899999998887766 45589999999999999999876432111 222333332221       013457888


Q ss_pred             EEeccc---cccc--C--C--HHHHHHHHHhccCCCCEEEEEEeee
Q 018194          194 AYSIEA---TCHA--P--K--LEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       194 v~~~~~---l~~~--~--~--~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +...--   .+-+  |  .  -..+|..+...|.|.|.+++.-.+.
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            764210   1111  1  1  3478899999999999998754333

>cd05281 TDH Threonine dehydrogenase

Probab=84.61  E-value=3.3  Score=38.01  Aligned_cols=97  Identities=20%  Similarity=0.249  Sum_probs=57.7

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCCCCCCccce
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF---LKMPFEDNHFDG  193 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~fD~  193 (359)
                      ...++.+||-.|+|. |..+..+++..+. .|++++-++...+.+++.    +...-+.....+.   ... .+.+.+|+
T Consensus       160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~-~~~~~vd~  234 (341)
T cd05281         160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSV-TDGTGVDV  234 (341)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHH-cCCCCCCE
Confidence            345778888877753 5566777777777 788888777666655532    2211011111111   011 12346888


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+..-.      ....+.++.+.|+++|+++..
T Consensus       235 vld~~g------~~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         235 VLEMSG------NPKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             EEECCC------CHHHHHHHHHHhccCCEEEEE
Confidence            876431      134567888999999998864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=84.60  E-value=3  Score=38.84  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--CCCC-C-CCCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG--NFLK-M-PFEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~  189 (359)
                      ....+.++.+||=.|+|. |..+..+++..|. .|++++.++...+.+++.    |...-+.....  +... + ....+
T Consensus       177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~~~  252 (365)
T cd05279         177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMTDG  252 (365)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHhCC
Confidence            445677889999888753 4555666776676 488899888888777542    32211111111  1100 0 01124


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccC-CCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLK-PGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~  227 (359)
                      .+|+|+-...     . ...+....+.|+ ++|.++...
T Consensus       253 ~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         253 GVDYAFEVIG-----S-ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             CCcEEEECCC-----C-HHHHHHHHHHhccCCCEEEEEe
Confidence            5888875321     1 346778888999 999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=84.39  E-value=23  Score=35.67  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEecc
Q 018194          124 DRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSIE  198 (359)
Q Consensus       124 ~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~  198 (359)
                      .+|+=+|||. |..........+.+++.+|.+++.++.+++.        ....+.+|..+..    ..-+..|++++..
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~  472 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI  472 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence            5788888874 4433222223467999999999999888652        2578999998753    2234677776643


Q ss_pred             cccccCCH--HHHHHHHHhccCCCCEEEE
Q 018194          199 ATCHAPKL--EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~~~--~~~l~~~~~~LkpgG~l~~  225 (359)
                           +|.  ...+-...+.+.|.-.++.
T Consensus       473 -----~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        473 -----DDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             -----CCHHHHHHHHHHHHHhCCCCeEEE
Confidence                 332  2333344555677766655

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=84.28  E-value=11  Score=34.55  Aligned_cols=97  Identities=21%  Similarity=0.180  Sum_probs=59.1

Q ss_pred             cCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEE
Q 018194          118 IDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAY  195 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~  195 (359)
                      +.+.++.+||=.||| .|..+..+++..+.++++++.+++..+.+++.    +..   .++...-.+. ....+.+|+|+
T Consensus       165 ~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~v~  237 (337)
T cd05283         165 NGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDLII  237 (337)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceEEE
Confidence            456778888878774 35555666676788999999998887776432    211   1111110000 01135688887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....     . ...+..+.+.|+++|.++...
T Consensus       238 ~~~g-----~-~~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         238 DTVS-----A-SHDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             ECCC-----C-cchHHHHHHHhcCCCEEEEEe
Confidence            5332     1 124677889999999998753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=84.22  E-value=3.4  Score=36.68  Aligned_cols=49  Identities=18%  Similarity=0.317  Sum_probs=39.1

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      +.+.++.+|.-+|+|.-.....+++.| ++|.++|+++..+...+-+.+.
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHHH
Confidence            445678899999999766777777765 6999999999998877665543

>PRK08265 short chain dehydrogenase; Provisional

Probab=84.20  E-value=12  Score=32.71  Aligned_cols=72  Identities=13%  Similarity=0.031  Sum_probs=44.8

Q ss_pred             CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 018194          123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----DN  189 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~  189 (359)
                      +.++|-.|+. |.++..+++.   .|.+|+.+|.++..++...+..     ..++.++.+|+.+..     +.     -+
T Consensus         6 ~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          6 GKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5678877754 4455444432   4789999999876554433322     235788899998742     10     14


Q ss_pred             ccceEEecccc
Q 018194          190 HFDGAYSIEAT  200 (359)
Q Consensus       190 ~fD~v~~~~~l  200 (359)
                      ..|+++.+...
T Consensus        80 ~id~lv~~ag~   90 (261)
T PRK08265         80 RVDILVNLACT   90 (261)
T ss_pred             CCCEEEECCCC
Confidence            57888776543

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=84.04  E-value=14  Score=33.61  Aligned_cols=92  Identities=12%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             CCCEEEEE--CCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccc
Q 018194          122 AGDRILDV--GCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNHFD  192 (359)
Q Consensus       122 ~~~~vLDi--GcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD  192 (359)
                      ++.++|=+  |+| .|..+..+++..++++++++.++...+.+++    .|..   .++..+-.+..      .+...+|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc
Confidence            34445444  443 4667777788778999999999988777765    2321   22222211110      1224588


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+-.-.     .  .......+.|++||+++.+.
T Consensus       215 ~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         215 IFFDAVG-----G--GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             EEEECCC-----c--HHHHHHHHhhCCCCEEEEEE
Confidence            8875322     1  22355678899999998754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.83  E-value=14  Score=33.85  Aligned_cols=96  Identities=23%  Similarity=0.400  Sum_probs=59.3

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-CCCCC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---M-PFEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~-~~~~~  189 (359)
                      ....+.++.+||=.|+  +.|..+..+++..++++++++.+. ..+.+++    .+..   .+...+-..   . .....
T Consensus       171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~  242 (350)
T cd08274         171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGAD---TVILRDAPLLADAKALGGE  242 (350)
T ss_pred             hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCCe---EEEeCCCccHHHHHhhCCC
Confidence            4456778999999997  346677777887788999988554 4444432    3321   111111000   0 01234


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+....       ...+..+.+.|+++|.++.+
T Consensus       243 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~  272 (350)
T cd08274         243 PVDVVADVVG-------GPLFPDLLRLLRPGGRYVTA  272 (350)
T ss_pred             CCcEEEecCC-------HHHHHHHHHHhccCCEEEEe
Confidence            6898876432       13577889999999998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=83.71  E-value=4.3  Score=33.65  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             EEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEcCCCCCCC
Q 018194          125 RILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------G-LD--------SLCEVVCGNFLKMPF  186 (359)
Q Consensus       125 ~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~  186 (359)
                      +|.=||+|+ |. ++..++. .|.+|+.+|.+++.++.++++....       + +.        .+++ ...|+.+.  
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred             CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence            356678875 32 3333444 4889999999999998888776541       1 11        2343 23444332  


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                        ...|+|+=.- .+.++-..++++++.+.+.|+-.|..
T Consensus        77 --~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas  112 (180)
T PF02737_consen   77 --VDADLVIEAI-PEDLELKQELFAELDEICPPDTILAS  112 (180)
T ss_dssp             --CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred             --hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence              2457765432 23333467899999999999988765

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=83.59  E-value=16  Score=32.74  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCC
Q 018194          117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~  189 (359)
                      .....++.+||=.|+  +.|..+..+++..|++|++++.+++..+.+++    .|..   .+.. +-.+.     .. ..
T Consensus       137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~-~~~~~~~~i~~~-~~  207 (320)
T cd08243         137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD---EVVI-DDGAIAEQLRAA-PG  207 (320)
T ss_pred             hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEEe-cCccHHHHHHHh-CC
Confidence            345677889998886  45677788888778999999999887666643    2321   1111 11111     12 35


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+++....     .  ..+.++.+.|+++|+++...
T Consensus       208 ~~d~vl~~~~-----~--~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         208 GFDKVLELVG-----T--ATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             CceEEEECCC-----h--HHHHHHHHHhccCCEEEEEc
Confidence            6888875332     2  45778899999999988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=83.36  E-value=7  Score=35.68  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=58.7

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhh-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCc
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAH-SRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNH  190 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~  190 (359)
                      .....+.++.+||=.|+|. |..+..+++. .|+ .++++|.+++..+.+++.    |...-+.....++.. +.-....
T Consensus       153 ~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~  228 (339)
T PRK10083        153 TGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGIK  228 (339)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCCC
Confidence            3445677889999999653 4455556663 466 588899998888776653    221101111111111 0001112


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-...     . ...+.+..+.|+++|+++.+.
T Consensus       229 ~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        229 PTLIIDAAC-----H-PSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             CCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            456554221     1 346788899999999998753

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.18  E-value=4.3  Score=36.64  Aligned_cols=99  Identities=19%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC----CCCC--CCCC
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN----FLKM--PFED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~  188 (359)
                      +...+.||++|-=+|.| -|.++..+|+..|.+|+++|-+..--+.+-++   .|-.   .|+..-    ...-  ..-+
T Consensus       175 k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LGAd---~fv~~~~d~d~~~~~~~~~d  248 (360)
T KOG0023|consen  175 KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LGAD---VFVDSTEDPDIMKAIMKTTD  248 (360)
T ss_pred             HHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cCcc---eeEEecCCHHHHHHHHHhhc
Confidence            44466789888777754 68899999998899999999997554444433   2311   222211    1100  0012


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      .-.|.|.+.        -...+..+.+.||++|.++++-.
T Consensus       249 g~~~~v~~~--------a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  249 GGIDTVSNL--------AEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             Ccceeeeec--------cccchHHHHHHhhcCCEEEEEeC
Confidence            223333322        22345677889999999998643

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=83.12  E-value=18  Score=31.67  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             CCCCHHHHHHHHHHH------HHHhcCCCCCCEEEEE--CCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194           99 PGKSHRDATRLHEEM------AVDLIDVKAGDRILDV--GCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus        99 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~vLDi--GcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      ...++..+...+.+.      +.+..++++|..||--  ..|.|.+..++++..+.++++.--+.+-.+.|++.-    .
T Consensus       117 e~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG----~  192 (336)
T KOG1197|consen  117 EAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENG----A  192 (336)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcC----C
Confidence            344455444444332      3445588899988765  456778888888877899999988888888887653    3


Q ss_pred             CCCeEEEEcCCCCC--CCC-CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          171 DSLCEVVCGNFLKM--PFE-DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       171 ~~~i~~~~~d~~~~--~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..-|.+...|+.+-  .+. ....|+++-.-.       ...+..-...|||+|.++-+
T Consensus       193 ~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG-------~dt~~~sl~~Lk~~G~mVSf  244 (336)
T KOG1197|consen  193 EHPIDYSTEDYVDEVKKITNGKGVDAVYDSVG-------KDTFAKSLAALKPMGKMVSF  244 (336)
T ss_pred             cceeeccchhHHHHHHhccCCCCceeeecccc-------chhhHHHHHHhccCceEEEe
Confidence            32355555555431  122 345676654322       23456677889999999864

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=82.58  E-value=18  Score=33.17  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=58.9

Q ss_pred             CCCCCEEEEECCC-CChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccc
Q 018194          120 VKAGDRILDVGCG-VGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFEDNHFD  192 (359)
Q Consensus       120 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~fD  192 (359)
                      ..++.+||-.|+| .|..+..+++..|+ .|++++.++...+.+++.    |..   .++...-...     ....+.+|
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d  245 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVD  245 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCc
Confidence            3467889988875 35566677777777 799999988887776432    321   1211111110     01112578


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +++....      ....+..+.+.|+++|.++...
T Consensus       246 ~vid~~g------~~~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         246 AVIDFVN------NSATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             EEEECCC------CHHHHHHHHHHhhcCCeEEEEC
Confidence            8875321      1346788899999999998653

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=82.52  E-value=3.7  Score=37.27  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             HhcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          116 DLIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ....+.++.+||-.|++  .|..+..++...+.+++.++.++...+.++..    +..  ..+   +..+..        
T Consensus       160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~~~~~~~~  230 (342)
T cd08266         160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GAD--YVI---DYRKEDFVREVREL  230 (342)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--eEE---ecCChHHHHHHHHH
Confidence            34566778899988875  45566666666788999999998877665432    211  111   111100        


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+|+++....       ...+..+.+.|+++|.++..
T Consensus       231 ~~~~~~d~~i~~~g-------~~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         231 TGKRGVDVVVEHVG-------AATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             hCCCCCcEEEECCc-------HHHHHHHHHHhhcCCEEEEE
Confidence            12346888876543       13467778899999998875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=82.14  E-value=17  Score=33.30  Aligned_cols=97  Identities=20%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             hcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCC
Q 018194          117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKM-----PFEDN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~-----~~~~~  189 (359)
                      ...+.++.+||=.|+| .|..+..+++..|.+|++++.+++..+.+++    .|..   .++...- .+.     .+..+
T Consensus       160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~~  232 (345)
T cd08260         160 QARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTGG  232 (345)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhCC
Confidence            4456778899999875 2456666777678899999999888777743    2321   2221111 111     01112


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+++....     . ...+....+.|+++|.++..
T Consensus       233 ~~d~vi~~~g-----~-~~~~~~~~~~l~~~g~~i~~  263 (345)
T cd08260         233 GAHVSVDALG-----I-PETCRNSVASLRKRGRHVQV  263 (345)
T ss_pred             CCCEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Confidence            6888876421     1 34677889999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK10458 DNA cytosine methylase; Provisional

Probab=82.13  E-value=9.7  Score=36.74  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=40.8

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ..+++|+-||.|.+..-+-....-.|.++|+++...+.-+.++..   .+.......|+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i  146 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDI  146 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhC
Confidence            469999999999999888664333667899999888776665421   11234455666654

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=81.97  E-value=17  Score=33.16  Aligned_cols=97  Identities=20%  Similarity=0.286  Sum_probs=61.1

Q ss_pred             hcCCCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCC
Q 018194          117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P-FED  188 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~  188 (359)
                      .+.+.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+++    .+..   .++..+-.+.     . .+.
T Consensus       160 ~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~  232 (343)
T cd08235         160 KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELTDG  232 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHhCC
Confidence            3467788899988875 455666677777788 9999988888776643    2321   2222111110     0 123


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..+|+|+-...      -...+..+.+.|+++|+++..
T Consensus       233 ~~vd~vld~~~------~~~~~~~~~~~l~~~g~~v~~  264 (343)
T cd08235         233 RGADVVIVATG------SPEAQAQALELVRKGGRILFF  264 (343)
T ss_pred             cCCCEEEECCC------ChHHHHHHHHHhhcCCEEEEE
Confidence            45888875422      124677788999999999864

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=81.91  E-value=14  Score=33.69  Aligned_cols=97  Identities=20%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CCCCCEEEEECCC-CChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C--CCCCCccceE
Q 018194          120 VKAGDRILDVGCG-VGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M--PFEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v  194 (359)
                      ..++.+||-.|+| .|..+..+++..|.+ |++++-++...+.+++.    +...-+.....++.+ +  ......+|+|
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v  234 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF  234 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence            4577888877765 355666677767776 88888887766665443    221001111111100 0  0123568988


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +-...      ....+.++.+.|+++|+++..
T Consensus       235 ld~~g------~~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       235 LEMSG------APKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             EECCC------CHHHHHHHHHhhcCCCEEEEE
Confidence            76421      134678889999999998764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=81.52  E-value=22  Score=31.42  Aligned_cols=93  Identities=25%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             CCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceE
Q 018194          119 DVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGA  194 (359)
Q Consensus       119 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v  194 (359)
                      .+.++.+||=.|+  +.|..+..+++..+.+++.++.++ ..+.+++    .+..   .+....-.+.  ......+|++
T Consensus       141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~d~v  212 (309)
T cd05289         141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDYTKGDFERAAAPGGVDAV  212 (309)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeCCCCchhhccCCCCceEE
Confidence            3667889998886  345666777777788999888766 5554432    2321   2222111111  1123457888


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...     ..  ..+..+.+.|+++|.++..
T Consensus       213 ~~~~-----~~--~~~~~~~~~l~~~g~~v~~  237 (309)
T cd05289         213 LDTV-----GG--ETLARSLALVKPGGRLVSI  237 (309)
T ss_pred             EECC-----ch--HHHHHHHHHHhcCcEEEEE
Confidence            7532     12  2677888999999998864

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PRK07109 short chain dehydrogenase; Provisional

Probab=81.33  E-value=24  Score=32.33  Aligned_cols=75  Identities=19%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-F---------EDN  189 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~---------~~~  189 (359)
                      +.+||=.|++ |.++..+++   ..|.+|+.++-++..++...+.+...+  .++.++.+|+.+.. .         .-+
T Consensus         8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            5678877765 444444443   147899999999887776665555443  35788899987742 0         014


Q ss_pred             ccceEEecccc
Q 018194          190 HFDGAYSIEAT  200 (359)
Q Consensus       190 ~fD~v~~~~~l  200 (359)
                      ..|+++.+...
T Consensus        85 ~iD~lInnAg~   95 (334)
T PRK07109         85 PIDTWVNNAMV   95 (334)
T ss_pred             CCCEEEECCCc
Confidence            68988876554

>PRK08267 short chain dehydrogenase; Provisional

Probab=81.25  E-value=14  Score=32.15  Aligned_cols=72  Identities=15%  Similarity=0.038  Sum_probs=46.1

Q ss_pred             EEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC------CCc
Q 018194          125 RILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE------DNH  190 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~------~~~  190 (359)
                      ++|-.|++ |.++..+++.   .|.+|+.++.++..++.......    ..++.++++|+.+..     +.      .+.
T Consensus         3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57777765 4444444431   46899999998877665544332    236889999998742     10      356


Q ss_pred             cceEEeccccc
Q 018194          191 FDGAYSIEATC  201 (359)
Q Consensus       191 fD~v~~~~~l~  201 (359)
                      +|+|+.+....
T Consensus        78 id~vi~~ag~~   88 (260)
T PRK08267         78 LDVLFNNAGIL   88 (260)
T ss_pred             CCEEEECCCCC
Confidence            79888766543

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=80.62  E-value=24  Score=32.87  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=63.3

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-------PF  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~  186 (359)
                      ....+.++.+||-.|+|. |..+..+++..|. +|+++|.++...+.+++.    +.    ..+  |..+.       .+
T Consensus       170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~----~~v--~~~~~~~~~~i~~~  239 (375)
T cd08282         170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA----IPI--DFSDGDPVEQILGL  239 (375)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC----eEe--ccCcccHHHHHHHh
Confidence            345667888888888763 5566677776676 799999988877766543    21    111  11110       01


Q ss_pred             CCCccceEEeccccccc-----CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHA-----PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|+|+-...-.-.     .+....+.++.++|+++|.+.+..
T Consensus       240 ~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g  285 (375)
T cd08282         240 EPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG  285 (375)
T ss_pred             hCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence            12457888764321110     133456888999999999997654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK07904 short chain dehydrogenase; Provisional

Probab=80.25  E-value=13  Score=32.57  Aligned_cols=78  Identities=24%  Similarity=0.132  Sum_probs=48.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHh----hcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEEcCCCCCC---------C
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA----HSRANVVGITINEYQ-VNRARLHNKKAGLDSLCEVVCGNFLKMP---------F  186 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~  186 (359)
                      ..+.+||-.|++. .++..+++    ..+.+|+.++-+++. ++...+.....+ ..+++++.+|+.+..         .
T Consensus         6 ~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          6 GNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            3466899888854 44544443    334799999887764 555544444433 236889999987643         1


Q ss_pred             CCCccceEEecccc
Q 018194          187 EDNHFDGAYSIEAT  200 (359)
Q Consensus       187 ~~~~fD~v~~~~~l  200 (359)
                      ..+..|+++.+...
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            11468987765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
3bus_A	273	Crystal Structure Of Rebm Length = 273		2e-22
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		8e-10
2o57_A	297	Crystal Structure Of A Putative Sarcosine Dimethylg		9e-10
4f84_A	320	Structure Analysis Of Geranyl Diphosphate Methyltra		1e-09
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		1e-08
3vc1_A	312	Crystal Structure Of Geranyl Diphosphate C-Methyltr		1e-06
3ujd_A	266	Phosphoethanolamine Methyltransferase Mutant (Y19f)		1e-05
3uj6_A	266	Semet Phosphoethanolamine Methyltransferase From Pl		1e-05
3uj7_A	266	Phosphoethanolamine Methyltransferase From Plasmodi		1e-05
3sm3_A	235	Crystal Structure Of Sam-Dependent Methyltransferas		1e-05
3bkw_A	243	Crystal Structure Of S-Adenosylmethionine Dependent		2e-05
3ujc_A	266	Phosphoethanolamine Methyltransferase Mutant (H132a		4e-05
1wzn_A	252	Crystal Structure Of The Sam-Dependent Methyltransf		5e-05
1kpi_A	302	Crystal Structure Of Mycolic Acid Cyclopropane Synt		5e-05
2fk7_A	318	Crystal Structure Of Hma (Mmaa4) From Mycobacterium		1e-04
2p8j_A	209	Crystal Structure Of S-Adenosylmethionine-Dependent		5e-04

>pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 70  PDFVDTFYNLVTDIYEWGWGQSFHF---SPSIPGKSHRDATRLHEEMAVDLIDVKAGDRI 126
           P+ V   Y+  TD +   WG++ HF     +    S  DAT    +  + L+DV++GDR+
Sbjct: 6   PEEVRQXYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEXIALLDVRSGDRV 65
Query: 127 LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF 186
           LDVGCG+G P   +A      V GI+I+  QVN+A      AGL +       +   +PF
Sbjct: 66  LDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXDLPF 125
Query: 187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ 246
           ED  FD  +++E+  H P       E  RVL+PG      ++V     E   KE VD  +
Sbjct: 126 EDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR 185
Query: 247 GIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP 283
                 +L G+  Y      A+ V    V     A+P
Sbjct: 186 AGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARP 222

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
           K   ++LD+ CGVGG    +  +    VVG+ I+E  + +AR + K    +S  E + G+
Sbjct: 37  KKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDXIRKAREYAKSR--ESNVEFIVGD 93
Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSY 226
             K+ FED  FD    I++  H   LE   V+ EV RVLKP   ++ Y
Sbjct: 94  ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXY 141

>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 71  DFVDTFYNLVTDIYEWGWGQSFH---FSPSIPGKSHRDAT-RLHEEMAVDLIDVKAGDRI 126
           D  D FY      + WG G+  H   +   +     R+A+ R  E +A +L       R 
Sbjct: 30  DDSDRFY-----FHVWG-GEDIHVGLYKEPVDQDEIREASLRTDEWLASELAXTGVLQRQ 83
Query: 127 ---LDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
              LD+G G GG  R +      ++  + I   Q  R   +N +AGL     V  G+FL+
Sbjct: 84  AKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143
Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP 219
           +P EDN +D  +S +A  H+P    V+ E  RVLKP
Sbjct: 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP 179

>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 44  AEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH 103
           A   +++   YW    RP      ++ D VD  Y+     + +G G   H +   PG   
Sbjct: 46  ATPYQEDIARYWNNEARP---VNLRLGD-VDGLYH-----HHYGIGAVDHAALGDPGDGG 96
Query: 104 RDAT------RLHEEMAVDLID----VKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGI 151
            +A       RL    A  L+D    V  GD ++D GCG GG M  + AH R    V G+
Sbjct: 97  YEARLIAELHRLESAQAEFLLDHLGPVGPGDTLVDAGCGRGGSM--VMAHQRFGCKVEGV 154
Query: 152 TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYA 211
           T++  Q        ++ G+D        N L  PFE      +++ E++ +   L DV+A
Sbjct: 155 TLSAAQAEFGNRRARELGIDDHVRSRVCNMLDTPFEKGTVAASWNNESSMYV-DLHDVFA 213
Query: 212 EVFRVLKPGSLYVSYEWVTTDKYEAENK 239
           E  R L+ G  YV+       +Y   +K
Sbjct: 214 EHSRFLRVGGRYVTVTGCWNPRYGQPSK 241

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 98  IPGKSHRDATRLHEEMAV-------DLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVV 149
           + G S R+A RL E+          D +    G ++L+ GCG+G     +A ++  A + 
Sbjct: 7   VHGYSEREALRLSEQAETLEKLLHHDTV-YPPGAKVLEAGCGIGAQTVILAKNNPDAEIT 65
Query: 150 GITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDV 209
            I I+   + +AR + +K G+ ++ + +  N   +PFED+ FD  +      H    E+ 
Sbjct: 66  SIDISPESLEKARENTEKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEA 124
Query: 210 YAEVFRVLKPGSLYVSYEWVTTDKY-EAENKEHVDI------IQGIERGDALPGLRSYAE 262
              + +VLKPG      E      Y   E K+ ++       +Q   +G++L G + Y  
Sbjct: 125 LKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYXKGNSLVGRQIYPL 184
Query: 263 ITEIAKRVGFEVVK 276
           + E     GFE ++
Sbjct: 185 LQE----SGFEKIR 194

>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 44  AEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNL-VTDIYEWGWGQSFHFSPSIPGKS 102
           A   +++   YW    RP       V       Y +   D    G  +   +   +  + 
Sbjct: 38  ATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAEL 97
Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNR 160
           HR  +   E +   L      D ++D GCG GG M  + AH R  + V G+T++  Q + 
Sbjct: 98  HRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSM--VMAHRRFGSRVEGVTLSAAQADF 155
Query: 161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
                ++  +D        N L  PF+      +++ E+T +   L D+++E  R LK G
Sbjct: 156 GNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVG 214
Query: 221 SLYVSYEWVTTDKYEAENK 239
             YV+       +Y   +K
Sbjct: 215 GRYVTITGCWNPRYGQPSK 233

>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           I++    ++LD+G G+GG    I     A+  GI I    VN A   N++   ++     
Sbjct: 51  IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
             + L   F +N+FD  YS +A  H   LE+   ++ + ++ LKP    +  ++  T+K 
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
            ++ E KE+V      +R   L  +  YA+I        F+ V  KDL+      +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213

>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           I++    ++LD+G G+GG    I     A+  GI I    VN A   N++   ++     
Sbjct: 51  IELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
             + L   F +N+FD  YS +A  H   LE+   ++ + ++ LKP    +  ++  T+K 
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
            ++ E KE+V      +R   L  +  YA+I        F+ V  KDL+      +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213

>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           I++    ++LD+G G+GG    I     A+  GI I    VN A   N++   ++     
Sbjct: 51  IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
             + L   F +N+FD  YS +A  H   LE+   ++ + ++ LKP    +  ++  T+K 
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAILHLS-LENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
            ++ E KE+V      +R   L  +  YA+I        F+ V  KDL+      +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213

>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS----LCE 175
           ++  D ILD+GCG G     +A+   + V GI IN   +  A    +  GL+       E
Sbjct: 28  LQEDDEILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAE 86
Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGS-LYV 224
               N   + F D+ FD A         P  ++   +  EVFRVLKPG+ LY+
Sbjct: 87  FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYL 139

>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182
           G RI+D+GCG G   R    H  + V+G+ ++E  + RAR     AG D+       +  
Sbjct: 44  GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARAR----AAGPDTGITYERADLD 99
Query: 183 KMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
           K+    + FD AYS  A  +   +  ++  V + L PG  +V
Sbjct: 100 KLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFV 141

>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           I++    ++LD+G G+GG    I     A+  GI I    VN A   N++   ++     
Sbjct: 51  IELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFE 107
Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDK- 233
             + L   F +N+FD  YS +A   A  LE+   ++ + ++ LKP    +  ++  T+K 
Sbjct: 108 ANDILTKEFPENNFDLIYSRDAIL-ALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166
Query: 234 -YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
            ++ E KE+V      +R   L  +  YA+I        F+ V  KDL+      +W +L
Sbjct: 167 NWDDEFKEYVK-----QRKYTLITVEEYADILTAC---NFKNVVSKDLS-----DYWNQL 213

>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 125 RILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM 184
           R+LD+ CG G P   +A      VVG+ ++E  +  AR   K+  L    E + G+ L++
Sbjct: 44  RVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEI 100
Query: 185 PFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYVS 225
            F+ N FD      +T      ED   ++++V   LKPG ++++
Sbjct: 101 AFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143

>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 99  PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQ 157
           P  +  +A     ++A+D ++++ G  +LD+GCG G  MR   A    NV+G+T++E Q
Sbjct: 49  PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQ 107

>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 71  DFVDTFYNLVTD---IYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRIL 127
           D  D F+ L  D    Y   +     F P  P  +  +A     ++ +D +D+K G  +L
Sbjct: 43  DVSDDFFALFQDPTRTYSCAY-----FEP--PELTLEEAQYAKVDLNLDKLDLKPGMTLL 95
Query: 128 DVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS 172
           D+GCG G  MR        NV+G+T+++ Q   AR     A +D+
Sbjct: 96  DIGCGWGTTMRRAVERFDVNVIGLTLSKNQ--HARCEQVLASIDT 138

>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent Methyltransferase (Np_349143.1) From Clostridium Acetobutylicum At 2.00 A Resolution Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 126 ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP 185
           +LD G G   P  +I         GI I++ Q+ +A   +++        +  G+  K+P
Sbjct: 27  VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LNISKGDIRKLP 84
Query: 186 FEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV- 242
           F+D      YS     H  K  +++   E+ RVLKPG L     ++TT        E + 
Sbjct: 85  FKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGL-ACINFLTTKDERYNKGEKIG 143
Query: 243 --DIIQGIERGDALPGLRSYAEITEIAK 268
             + +Q +ERG+ +  + SY  + E  K
Sbjct: 144 EGEFLQ-LERGEKV--IHSYVSLEEADK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	7e-89
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-83
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	3e-79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	9e-67
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-52
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	5e-50
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-37
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-36
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-34
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-33
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-29
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-27
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-26
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	8e-24
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-23
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	5e-22
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	2e-21
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-21
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-21
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	6e-21
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-20
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	8e-20
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-19
3ege_A	261	Putative methyltransferase from antibiotic biosyn	1e-19
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-19
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	6e-19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-18
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	1e-17
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-17
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-17
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	5e-17
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-17
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-16
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	1e-15
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-15
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-14
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-14
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-14
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	5e-14
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	6e-14
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	7e-14
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	1e-13
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	4e-13
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	4e-13
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	5e-13
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-12
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-12
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	7e-12
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	7e-12
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	9e-12
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	2e-11
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-11
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-11
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	4e-11
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	5e-11
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	3e-10
3lcc_A	235	Putative methyl chloride transferase; halide methy	3e-10
2p7i_A	250	Hypothetical protein; putative methyltransferase,	4e-10
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	6e-10
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-09
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	4e-09
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	6e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-09
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	7e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-08
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-08
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	4e-08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	4e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	9e-08
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	2e-07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-07
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	2e-07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	4e-07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	4e-07
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-07
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	7e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	1e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	1e-06
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-06
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	4e-06
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	5e-06
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	6e-06
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	9e-06
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	1e-05
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	2e-05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	2e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	3e-05
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	3e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	4e-05
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	6e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	4e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	6e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	7e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	8e-04

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score =  267 bits (685), Expect = 7e-89
 Identities = 75/290 (25%), Positives = 114/290 (39%), Gaps = 22/290 (7%)

Query: 67  EKVPDFVDTFYNLVTDIYEWGWGQSFHFS---PSIPGKSHRDATRLHEEMAVDLIDVKAG 123
              P+ V   Y+  TD +   WG++ HF     +    S  DAT    +  + L+DV++G
Sbjct: 3   APTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSG 62

Query: 124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK 183
           DR+LDVGCG+G P   +A      V GI+I+  QVN+A      AGL +       + + 
Sbjct: 63  DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD 122

Query: 184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD 243
           +PFED  FD  +++E+  H P       E+ RVL+PG      ++V     E   KE VD
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD 182

Query: 244 IIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNH 303
                  G  +  L    E     ++    V    D++     P   +            
Sbjct: 183 ---AFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQAR-PSLVKTAEAFENARS-- 236

Query: 304 ILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
                     + P       D +  T   L    E G      ++  RKP
Sbjct: 237 ---------QVEPFMGAEGLDRMIATFRGLAEVPEAG----YVLIGARKP 273

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score =  255 bits (652), Expect = 1e-83
 Identities = 62/306 (20%), Positives = 111/306 (36%), Gaps = 29/306 (9%)

Query: 59  KRPKETTKEKVPDFVDTFYNLVT--DIYEWGWG-QSFHFS---PSIPGKSHRDATRLHEE 112
           +     T + V D  + +Y+       Y   WG +  H       +     R+A+   +E
Sbjct: 9   QSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDE 68

Query: 113 MAVDLID----VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA 168
                +     ++   + LD+G G GG  R +      ++  + I   Q  R   +N +A
Sbjct: 69  WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA 128

Query: 169 GLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228
           GL     V  G+FL++P EDN +D  +S +A  H+P    V+ E  RVLKP  +    + 
Sbjct: 129 GLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188

Query: 229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPW 288
           +  D  +  + +       I     L  + S      +AK  G   ++            
Sbjct: 189 MKEDGIDKSSIQP------ILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP-DSLVHH 241

Query: 289 WTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMV 348
           ++++K                    IA   +      + +  ++   GG  G  T    +
Sbjct: 242 YSKVKAELIKRSSE-----------IASFCSPEFQANMKRGLEHWIEGGRAGKLT-WGGM 289

Query: 349 LLRKPH 354
           L RK  
Sbjct: 290 LFRKSD 295

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score =  244 bits (624), Expect = 3e-79
 Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 7/262 (2%)

Query: 33  RAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNL-VTDIYEWGWGQS 91
            A   +     A   +++   YW    RP       V       Y +   D    G  + 
Sbjct: 27  TATATAKIPAPATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPVDRAALGDPEH 86

Query: 92  FHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGI 151
             +   +  + HR  +   E +   L      D ++D GCG GG M        + V G+
Sbjct: 87  SEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV 146

Query: 152 TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYA 211
           T++  Q +      ++  +D        N L  PF+      +++ E+T +     D+++
Sbjct: 147 TLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDL-HDLFS 205

Query: 212 EVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271
           E  R LK G  YV+       +Y   +K    I            + S  E         
Sbjct: 206 EHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQI-----NAHFECNIHSRREYLRAMADNR 260

Query: 272 FEVVKEKDLAKPPAQPWWTRLK 293
                  DL       W  R  
Sbjct: 261 LVPHTIVDLTPDTLPYWELRAT 282

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score =  210 bits (537), Expect = 9e-67
 Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 26/233 (11%)

Query: 73  VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCG 132
            + + +    +YE+ +G+++  S  +            +++    I++    ++LD+G G
Sbjct: 16  NNQYTDEGVKVYEFIFGENYISSGGL---------EATKKIL-SDIELNENSKVLDIGSG 65

Query: 133 VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD 192
           +GG    I     A+  GI I    VN A   N++   ++       + L   F +N+FD
Sbjct: 66  LGGGCMYINEKYGAHTHGIDICSNIVNMA---NERVSGNNKIIFEANDILTKEFPENNFD 122

Query: 193 GAYSIEAT--CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER 250
             YS +A           ++ + ++ LKP    +  ++  T+K   +++    + Q    
Sbjct: 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRK-- 180

Query: 251 GDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNH 303
                 L +  E  +I     F+ V  KDL+      +W +L      Y   +
Sbjct: 181 ----YTLITVEEYADILTACNFKNVVSKDLS-----DYWNQLLEVEHKYLHEN 224

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score =  172 bits (437), Expect = 5e-52
 Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 25/219 (11%)

Query: 74  DTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGV 133
           D  ++ + + ++    Q         G    +ATR        + ++    +I D+GCG 
Sbjct: 10  DFDFSFICNYFKLLKRQ---------GPGSPEATRKAVSF---INELTDDAKIADIGCGT 57

Query: 134 GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193
           GG    +A + +  + GI +    +     +  KA      + + G+   +PF++   D 
Sbjct: 58  GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDL 117

Query: 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV-TTDKYEAENKEHVDIIQGIERGD 252
            +S  A  +    E    E  + LK G      E    T +  AE ++           D
Sbjct: 118 IWSEGAIYNIGF-ERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM--------D 168

Query: 253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTR 291
           A P +       +  +R G+       L   P   W   
Sbjct: 169 AYPEISVIPTCIDKMERAGYTPTAHFIL---PENCWTEH 204

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score =  165 bits (419), Expect = 5e-50
 Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
                   +      +LD G G   P  +I         GI I++ Q+ +A   +++   
Sbjct: 12  YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH--APKLEDVYAEVFRVLKPGSLYVSYEW 228
                +  G+  K+PF+D      YS     H     +++   E+ RVLKPG L      
Sbjct: 72  K--LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129

Query: 229 VTTD-KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR-VGFEVVKEKD 279
            T D +Y    K        +ERG+ +    SY  + E  K     +V+ ++D
Sbjct: 130 TTKDERYNKGEKIGEGEFLQLERGEKVI--HSYVSLEEADKYFKDMKVLFKED 180

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score =  161 bits (408), Expect = 1e-47
 Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 25/217 (11%)

Query: 74  DTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGV 133
           D   NL+ D +     Q         G    + T    +    + ++     I D+GCG 
Sbjct: 10  DFELNLICDFFSNMERQ---------GPGSPEVTL---KALSFIDNLTEKSLIADIGCGT 57

Query: 134 GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193
           GG    +A H    V G+      ++    + +++GL +    + G+   +PF +   D 
Sbjct: 58  GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDL 117

Query: 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV-TTDKYEAENKEHVDIIQGIERGD 252
            +S E   +    E    E  + LK G      E    TD+  AE  +           D
Sbjct: 118 IWS-EGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM--------D 168

Query: 253 ALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWW 289
           A P + +         + G+  V    L   P   W 
Sbjct: 169 AYPEIDTIPNQVAKIHKAGYLPVATFIL---PENCWT 202

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score =  132 bits (334), Expect = 3e-37
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 11/195 (5%)

Query: 87  GWGQSFHFSPS---IPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH 143
           G+ + +   P+   I  + +R      E + +  +  K   ++LD+ CGVGG    +  +
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY 59

Query: 144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203
               VVG+ I+E  + +AR + K    +   E + G+  K+ FED  FD    I++  H 
Sbjct: 60  G-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDARKLSFEDKTFDYVIFIDSIVHF 116

Query: 204 PKLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA 261
             LE   V+ EV RVLKP   ++ Y     +      KE + + Q       +P      
Sbjct: 117 EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLP-RLKESLVVGQKYWISKVIPDQEERT 175

Query: 262 EITEIAKRVGFEVVK 276
            + E         V+
Sbjct: 176 VVIEFKSEQDSFRVR 190

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score =  129 bits (327), Expect = 4e-36
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 3/191 (1%)

Query: 88  WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN 147
             +       I          +  E  ++   + AG   +D+G G G    A+A  S  +
Sbjct: 10  DKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFS 68

Query: 148 VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLE 207
           +  +  +++    A  +   A L+   ++V G+   +P EDN+ D   S  +      + 
Sbjct: 69  IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVA 128

Query: 208 DVYAEVFRVLKP-GSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP-GLRSYAEITE 265
             + E++R+LK  G  Y+   +   +  ++ + E +      +  +       +      
Sbjct: 129 TAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188

Query: 266 IAKRVGFEVVK 276
           +   +G    +
Sbjct: 189 VLDEIGISSYE 199

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score =  124 bits (314), Expect = 5e-34
 Identities = 42/247 (17%), Positives = 79/247 (31%), Gaps = 28/247 (11%)

Query: 59  KRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLI 118
           K  +  TK    +  +  ++   + +     + +            D+      +     
Sbjct: 2   KVGECMTKFNWHESAEKKWDSSAEFWNQNSQEMW------------DSGSRSTIIPFFEQ 49

Query: 119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178
            VK    +LDVGCG G     ++       VG+ I+E  + + +   +   L      + 
Sbjct: 50  YVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPDL----SFIK 104

Query: 179 GNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238
           G+   +PFE+  F+   +I +     +      E+ RVLK            T       
Sbjct: 105 GDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT------A 158

Query: 239 KEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK-----PPAQPWWTRLK 293
           K   +    +   D +       E  ++ K  GF+VV    + K            T L+
Sbjct: 159 KPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQ 218

Query: 294 MGRFAYW 300
                 W
Sbjct: 219 QSLTFLW 225

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score =  125 bits (314), Expect = 1e-33
 Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 17/269 (6%)

Query: 98  IPGKSHRDATRLH------EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVG 150
           + G S R+A RL       E++         G ++L+ GCG+G     +A +   A +  
Sbjct: 7   VHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITS 66

Query: 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVY 210
           I I+   + +AR + +K G+ +  + +  N   +PFED+ FD  +      H    E+  
Sbjct: 67  IDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEAL 125

Query: 211 AEVFRVLKPGSLYVSYEWV-TTDKYEAENKEHVDIIQGIER--GDALPGLRSYAEITEIA 267
             + +VLKPG      E    +  +  E K+ ++    + R             +I  + 
Sbjct: 126 KSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLL 185

Query: 268 KRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLF 327
           +  GFE ++     +P      +        +    I+  +      + K  +   +   
Sbjct: 186 QESGFEKIR----VEPRMVYIDSSKPELVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWE 241

Query: 328 KTADYLTRGGETG--IFTPMHMVLLRKPH 354
           K  + L +  E G             K  
Sbjct: 242 KGIEELHKTAEHGGTFCYTFFKGWGTKEG 270

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score =  113 bits (284), Expect = 2e-29
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 7/177 (3%)

Query: 99  PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQV 158
             + H   T         ++ +K G RILD+G G G  +   A        GI ++    
Sbjct: 13  EHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFT 72

Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
            +A+   ++ G+      +  +       +   D A  + AT  A         + + LK
Sbjct: 73  AQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLK 131

Query: 219 PGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
           PG +      +  + Y  +     +I Q      +     +   +      +G++VV
Sbjct: 132 PGGIM-----LIGEPYWRQLPATEEIAQAC-GVSSTSDFLTLPGLVGAFDDLGYDVV 182

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score =  107 bits (268), Expect = 2e-27
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 5/186 (2%)

Query: 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN 165
                  + +   + +A  R+LD+G G G    A + +     +G+   +  V  A    
Sbjct: 5   HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFA 63

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS 225
           ++ G++++     G    +PF D+ FD      A  H   +     EV RVLK    ++ 
Sbjct: 64  QEKGVENV-RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 122

Query: 226 YEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPA 285
            +    +  +    E V+ +  + R  +     S +E   +           +    P  
Sbjct: 123 VDHYAPE--DPVLDEFVNHLNRL-RDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQ 179

Query: 286 QPWWTR 291
              W +
Sbjct: 180 YDSWIK 185

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score =  105 bits (264), Expect = 2e-26
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 20/227 (8%)

Query: 73  VDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRD-ATRLHEEMAVDLID--VKAGDRILDV 129
           ++  +      ++ G G           +     ATR         +   ++ G  +  V
Sbjct: 66  LNAEWTHRLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASV 125

Query: 130 GCGVGGPMRAIA--AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE 187
            CG    + A+   A     +VGI  +   ++ A        L     +   +  K+   
Sbjct: 126 PCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR 185

Query: 188 DNHFDGAYSIEATCHAP---KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDI 244
           +  +D   S     + P   ++ ++Y   ++ LKPG   V+           ++   +  
Sbjct: 186 E-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQA 244

Query: 245 IQ-----------GIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
           I                      LR++A+     +  GF  ++ +D 
Sbjct: 245 IDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD 291

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 97.9 bits (244), Expect = 8e-24
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 11/191 (5%)

Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
           H   + L     + +  +K  + +LDV  G G    A A      VV   + E  +  AR
Sbjct: 20  HAKGSDL--AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVAR 76

Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
              +  G   + E V G+  +MPF D  F       A  H P      +E +RVLK G  
Sbjct: 77  AFIEGNGHQQV-EYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQ 135

Query: 223 YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA--EITEIAKRVGFEVVKEKDL 280
            +  +         EN         +E+       R++   +  ++ +  GFE+ +    
Sbjct: 136 LLLVDNSA-----PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190

Query: 281 AKPPAQPWWTR 291
            K      W  
Sbjct: 191 HKTFIFEDWCD 201

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 97.8 bits (243), Expect = 5e-23
 Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 32/257 (12%)

Query: 61  PKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMA------ 114
               +   + D V  +Y             +   + ++P    +    + +E+       
Sbjct: 13  KNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGC 72

Query: 115 ---VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN--VVGITINEYQVNRARLHNKKAG 169
              +       G  +LD+GCG G  +   +     +  V+G+ + + Q+  AR + +   
Sbjct: 73  GSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132

Query: 170 LDSLCEVVCGN--FLK-----------MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRV 216
                     N  FLK               D+  D   S      +     ++ E+ RV
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRV 192

Query: 217 LKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGF---E 273
           L+ G      +     +     ++   +      G+ L G     +   +    GF    
Sbjct: 193 LRDGGELYFSDVYADRRLSEAAQQDPIL-----YGECLGGALYLEDFRRLVAEAGFRDVR 247

Query: 274 VVKEKDLAKPPAQPWWT 290
           +V    +     Q    
Sbjct: 248 LVSVGPVDVSDPQLRKL 264

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 92.6 bits (230), Expect = 5e-22
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCE 175
            ++    G RI+D+GCG G   R    H  + V+G+ ++E  + RAR      G+     
Sbjct: 37  AMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGI----T 92

Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
               +  K+    + FD AYS  A  +   +  ++  V + L PG  +V
Sbjct: 93  YERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFV 141

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 90.6 bits (225), Expect = 2e-21
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 27/193 (13%)

Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
           +  +    R +++G G G       A      +G+  +E     AR             V
Sbjct: 42  VKCLLPEGRGVEIGVGTG-----RFAVPLKIKIGVEPSERMAEIARKRG--------VFV 88

Query: 177 VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA 236
           + G    +P +D  FD A  +   C     E    E +R+LK G   +            
Sbjct: 89  LKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD------R 142

Query: 237 ENKEHVDIIQGIERGDALPGLRSY--AEITEIAKRVGFEVVK-EKDLAKPPA-----QPW 288
           E+    +  +  E+       R +   E+ ++ ++ GFE  K  + L K P+     +P 
Sbjct: 143 ESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPV 202

Query: 289 WTRLKMGRFAYWR 301
                 G F   R
Sbjct: 203 KEGYGEGAFVVIR 215

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 28/210 (13%), Positives = 65/210 (30%), Gaps = 18/210 (8%)

Query: 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKA 168
             +   +  +     I+D GCG G     +       +   GI   E  +  AR   +  
Sbjct: 11  SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70

Query: 169 GLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE- 227
             D   E + G+  ++   D  +D A       H    E +  ++   +K G   + +E 
Sbjct: 71  PYD--SEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 127

Query: 228 -WVTTDKY---EAENKEHVDIIQGIERGDALPGLRSYAEIT------EIAKRVGFEVVKE 277
            W++       + E +     +  +++       R+  +             +G + ++ 
Sbjct: 128 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIEC 187

Query: 278 K--DLAKPPAQPWWTRLKMGRFAYWRNHIL 305
           +  D             K   +   +   +
Sbjct: 188 RVSDKVNFLDSNMHHNDKNDLYQSLKEEGI 217

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 90.8 bits (225), Expect = 3e-21
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 8/201 (3%)

Query: 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN 165
           A ++   MA  +         L++G G G     + A      + +  +   +   R   
Sbjct: 23  AGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFR--Q 79

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS--LY 223
           K AG+D   +VV  +   +P  D    G   +      P    V AE  RVLKPG   L 
Sbjct: 80  KIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLE 139

Query: 224 VSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE---KDL 280
              +   + ++  + +      +     +     +   E+ E  +R+G +       +  
Sbjct: 140 GWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVARWR 199

Query: 281 AKPPAQPWWTRLKMGRFAYWR 301
            +   +     L    +++ +
Sbjct: 200 EERTPREALEALSERLYSFTQ 220

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 89.1 bits (221), Expect = 6e-21
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 101 KSHRDATRLHEEM-AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVN 159
           K          ++  +    ++  D ILD+GCG G     +A+    +V GI IN   + 
Sbjct: 8   KVSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIR 66

Query: 160 RARLHNKKAGLDSL----CEVVCGNFLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAE 212
            A    +  GL+       E    N   + F D+ FD       + +     +   +  E
Sbjct: 67  LAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKE 126

Query: 213 VFRVLKPG 220
           VFRVLKPG
Sbjct: 127 VFRVLKPG 134

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 88.5 bits (219), Expect = 2e-20
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 28/229 (12%)

Query: 77  YNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGP 136
            + +TD+   G   +            R  T  H     +   VK G++IL++GCG G  
Sbjct: 6   LDYITDLMALGPTANAR-------TIQRRQTA-HRLAIAEAWQVKPGEKILEIGCGQGDL 57

Query: 137 MRAIAAHSRAN--VVGITINE------YQVNRARLHNKKAGLDSLCEVVCG---NFLKMP 185
              +A    ++  V GI I          + +A  H     L     V      +    P
Sbjct: 58  SAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP 117

Query: 186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV--D 243
             D HFD      +  +      +      +          EW +      +   H+   
Sbjct: 118 IADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW-SMQPTALDQIGHLQAA 176

Query: 244 IIQGI---ERGDALPGLRSY---AEITEIAKRVGFEVVKEKDLAKPPAQ 286
           +IQG+        +  +R+      + +IA    +       +  P   
Sbjct: 177 MIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVEDPTLD 225

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 85.9 bits (213), Expect = 8e-20
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDS 172
           +    +K G  +LDVG G G  +  ++     +  V  I + E  VN A     K GL +
Sbjct: 30  LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN 89

Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232
             EV+     K+P  DN  D  +         +      E+ RV KP +     +W   +
Sbjct: 90  -VEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148

Query: 233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL 280
           +               ++G     + S  E+  I +  G  V +  ++
Sbjct: 149 R---------------DKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV 181

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 85.9 bits (212), Expect = 1e-19
 Identities = 36/258 (13%), Positives = 71/258 (27%), Gaps = 24/258 (9%)

Query: 25  GPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIY 84
           GP     K A   S  ++     + N K Y    +  K      + D    +Y    + +
Sbjct: 1   GPGSMPSKEA---SSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYW 57

Query: 85  EWGWGQSFHFSPSIPGKSHRDATRLHE-EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH 143
                     S  + G  H     +      +  +      R LD G G+G   + +   
Sbjct: 58  R---TVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTK 114

Query: 144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA 203
             A    +   ++ +  A+   ++     + + +  +        N +D         + 
Sbjct: 115 LYATTDLLEPVKHMLEEAK---RELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171

Query: 204 P--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA 261
                   +    + L P       E  +T      +KE   + +            S  
Sbjct: 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTR------------SDI 219

Query: 262 EITEIAKRVGFEVVKEKD 279
               +    G  VVKE  
Sbjct: 220 HYKRLFNESGVRVVKEAF 237

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 19/201 (9%)

Query: 102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA 161
             R          ++L+++  G  I D+G G GG   A+A      V  +  +     +A
Sbjct: 14  QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQA 72

Query: 162 RLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS 221
            +H +        E   G    +   D   DG  SI A  H   LE  + E+ R+++ G+
Sbjct: 73  VVHPQ-------VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGT 125

Query: 222 LYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA 281
           + V   +           ++   +      +         E   + +      V+     
Sbjct: 126 I-VLLTFDIRLAQRIWLYDYFPFL-----WEDALRFLPLDEQINLLQENTKRRVEAIPFL 179

Query: 282 KPPAQPWWTRLKMGRFAYWRN 302
            P              A WR 
Sbjct: 180 LPHDLSDLFAA-----AAWRR 195

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 86.4 bits (213), Expect = 2e-19
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 11/179 (6%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGL 170
           +    L   + G+R + +G G       + +H     V  + I       +R   +  G+
Sbjct: 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV 171

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV--SYEW 228
           D +  V+ G+   +   +  FD          A     V+  + R +   +  +  +Y  
Sbjct: 172 DGV-NVITGDETVIDGLE--FDVLM---VAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225

Query: 229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQP 287
           +    Y   + + +   +       LP  +       + K      +  K   KP   P
Sbjct: 226 MRAILYAPVSDDDITGFRRAGV--VLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIPNP 282

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 83.3 bits (206), Expect = 6e-19
 Identities = 38/206 (18%), Positives = 63/206 (30%), Gaps = 15/206 (7%)

Query: 102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA 161
           +   A  + EE       +  G+ +L+VG G G     +        VG+  +E  +   
Sbjct: 16  TPLGAYVIAEEERALKGLLPPGESLLEVGAGTG---YWLRRLPYPQKVGVEPSEAMLAVG 72

Query: 162 RLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS 221
           R    +A        V      +PF    FD             +E V  E  RVL+PG 
Sbjct: 73  RRRAPEA------TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGG 126

Query: 222 LYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA 281
             V       +        +  + +      A     +  ++  +      E   E    
Sbjct: 127 ALVVGVL---EALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEAEG--EAVFL 181

Query: 282 KPPAQPWWTRLK-MGRFAYWRNHILV 306
            P A P +      GR A  R  + +
Sbjct: 182 APEAHPPYEEADLAGRRAGNRPALYL 207

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 82.3 bits (203), Expect = 3e-18
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 4/109 (3%)

Query: 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCE 175
            ++       +LD+GCG G      A H    V+GI ++E  +  A+    +     +  
Sbjct: 38  KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAK----RKTTSPVVC 93

Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
                   +  E + ++   S  A  +    +D+  +V+  LK    ++
Sbjct: 94  YEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFI 142

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 70  PDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDV 129
           PD    F +     Y                 ++ +       +   L ++ AG +IL++
Sbjct: 3   PDMTQAFDDDTLRFYRGNA------------TAYAERQPRSATLTKFLGELPAGAKILEL 50

Query: 130 GCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189
           GCG G    A+ A    +V     +      A    ++ G      V    F ++   D 
Sbjct: 51  GCGAGYQAEAMLAA-GFDVDATDGSPELAAEAS---RRLG----RPVRTMLFHQLDAID- 101

Query: 190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKP-GSLYVSY 226
            +D  ++     H P+  L DV   ++R LKP G  Y SY
Sbjct: 102 AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 13/196 (6%)

Query: 88  WGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN 147
           W  ++          +++    +E++ ++ +  K+   +L+ G G G     +       
Sbjct: 12  WAHTYDSFVQGEDIQYKEVFAHYEDI-LEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RT 69

Query: 148 VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH--APK 205
           V GI  +      A+   +K   +    +  G+FL         D   S  A  H    +
Sbjct: 70  VYGIEPSREMRMIAK---EKLPKE--FSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDE 123

Query: 206 LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA---E 262
                A+  ++L  G   V  + +  D+   +        +G  +         Y     
Sbjct: 124 KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPV 183

Query: 263 ITEIAKRVGFEVVKEK 278
           +  I +  GF V   +
Sbjct: 184 MQTIFENNGFHVTFTR 199

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNK 166
             +               ILD+G G G     +   +  A    + ++E  +  A+   +
Sbjct: 30  DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR 89

Query: 167 KAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYV 224
               +   + +  ++ K  F +  +D   S  +  H      +++Y   + +LK   +++
Sbjct: 90  G---NLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI 145

Query: 225 SYEWVTTDKYEAENKEHV--------------DIIQGIERGDALPGLRSYAEITEIAKRV 270
           + + V  +    EN                  +I  G ER      +    +     K  
Sbjct: 146 NADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDI-EMNQQLNWLKEA 204

Query: 271 GFEVVK 276
           GF  V 
Sbjct: 205 GFRDVS 210

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 10/119 (8%)

Query: 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG 169
             E  +  I       I+D GCG G   + +   +   +  I IN   +   +   +K  
Sbjct: 5   RPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVK---EK-- 58

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW 228
                + V          DN  D      +       + V +EV R+LK     +  +W
Sbjct: 59  ----FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 78.3 bits (193), Expect = 5e-17
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 9/169 (5%)

Query: 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
           ++  +  I  +  +R+LD+GCG G  +RA+A       VG+  +   V+ AR     AG 
Sbjct: 41  DQAILLAILGRQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAAG--AGE 97

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP-GSLYVSYE-- 227
             L         K+P     +D   +  A  H   + ++ + +  +L P G+L +     
Sbjct: 98  VHLASYAQLAEAKVPV-GKDYDLICANFALLHQD-IIELLSAMRTLLVPGGALVIQTLHP 155

Query: 228 WVTTDKYEAENKEHVDIIQGIERGDALPG-LRSYAEITEIAKRVGFEVV 275
           W   D    +                +P   R+ A         G  +V
Sbjct: 156 WSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 77.5 bits (191), Expect = 5e-17
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 23/178 (12%)

Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
              +    + + ++         ILDVG G G     +A+     + G+      V  AR
Sbjct: 22  TVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELAR 80

Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKP- 219
                  +        G    +      + G  +  +  H     L D    +   ++  
Sbjct: 81  --QTHPSV----TFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDG 134

Query: 220 GSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKE 277
           G L +S+                  ++ +    A        E+ +  +  GF+V   
Sbjct: 135 GGLLMSF-------------FSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 78.0 bits (192), Expect = 1e-16
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 39/231 (16%)

Query: 60  RPKETTKEKVPDFVDTF---YNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVD 116
                 K +  +F D     Y+ + +  +W                HR      EE    
Sbjct: 8   HHHHHMKLRSWEFYDRIARAYDSMYETPKWK-------------LYHRLIGSFLEEY--- 51

Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
              +K   R+LD+G G G     +       VV +  ++  +  AR   +K   +    V
Sbjct: 52  ---LKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAR---EKGVKN----V 100

Query: 177 VCGNFLKMPFEDNHFDGAYSI-EATCHAPKLEDVYAEVFRVLKPGSLYV----SYEWVTT 231
           V      +PF    F+   ++ +   +    +  ++E+ RVL P  L +    ++     
Sbjct: 101 VEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQ 160

Query: 232 DKYEAENKEHVDIIQGIERGDALPGLRSYAEI----TEIAKRVGFEVVKEK 278
              E +  + +      +       L S+        ++    GFE V  +
Sbjct: 161 QMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIR 211

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
                         L        +L++  G G   R ++  +   V  +  +   +  A 
Sbjct: 27  VPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAG 85

Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKP- 219
               + GLD+  E    +       D  +D  +      H P    E  +  V   + P 
Sbjct: 86  ----RHGLDN-VEFRQQDLFDWTP-DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139

Query: 220 GSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD-----ALPGLRSYAEITEIAKRVGFEV 274
           G +          + E ++    ++       D      +   RS AE+TE    +G+  
Sbjct: 140 GVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 16/178 (8%)

Query: 104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL 163
             + +  +    +  +       LD G G+G   + +       V  + I E  + +A+ 
Sbjct: 61  NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKT 120

Query: 164 HNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGS 221
           +  + G   +    C        E + +D  +      H     L +        L+P  
Sbjct: 121 YLGEEGKR-VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG 179

Query: 222 LYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279
           + V  + +  +    ++ +                 R    +  I    G  ++ E+ 
Sbjct: 180 IIVIKDNMAQEGVILDDVDS-------------SVCRDLDVVRRIICSAGLSLLAEER 224

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 71.9 bits (176), Expect = 7e-15
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGL-- 170
            V  +      R++D+GCG G  ++ +   S    + G+ ++   +  A+    +  L  
Sbjct: 21  VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80

Query: 171 --DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH--APKLEDVYAEVFRVLKPGSLYVS 225
                 +++ G         + +D A  IE   H    +L      +F   +P  + V+
Sbjct: 81  NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVT 139

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 40/259 (15%), Positives = 76/259 (29%), Gaps = 40/259 (15%)

Query: 52  KEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHE 111
                     K+   E   + +   YN + +       +S          + R     + 
Sbjct: 2   DSSSPLKTFRKDQAMEGKKEEIREHYNSIRERGRESRQRS-------KTINIR---NANN 51

Query: 112 EMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG 169
            +   LI    K GD +LD+GCG GG +            G+ I E  +N AR+  +   
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111

Query: 170 LDSLCEVVCGNFLKMPFE-DNHFDGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYV 224
                     +      +    FD   S  +  +A      L+     + R L+PG  ++
Sbjct: 112 RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171

Query: 225 SY----EWVTTDKYEAENKEHVDIIQGIERGDALPG-------------------LRSYA 261
                 + +     +         I+  +  D                          + 
Sbjct: 172 MTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFT 231

Query: 262 EITEIAKRVGFEVVKEKDL 280
            + +  KR+G  +V+ K  
Sbjct: 232 RMVDGFKRLGLSLVERKGF 250

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 70.2 bits (172), Expect = 2e-14
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 103 HRDATRLHEEMAVD--LID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQV 158
            R+      ++  +  LID     G +ILD GCG G     ++     +V+G  ++   +
Sbjct: 23  WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILI 81

Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH---APKLEDVYAEVFR 215
           + A+    +A        V G+       +  FD   S             E   A + R
Sbjct: 82  DYAKQDFPEA------RWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHR 135

Query: 216 VLKPG 220
            L   
Sbjct: 136 ALGAD 140

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 27/224 (12%), Positives = 61/224 (27%), Gaps = 14/224 (6%)

Query: 88  WGQSFHFSPSIPGKSHRDATRLHE---EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS 144
           W Q ++ +         DA        ++    +       ++D  CG G   + ++   
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF 78

Query: 145 RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-- 202
              V+G+ +++  +  A   N  A +                     D    +    H  
Sbjct: 79  -PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI 137

Query: 203 -APKLEDVYAEVFRVLKPGSLYVSYEWVTTDK-----YEAENKEHVDIIQGIERGDALPG 256
              K E +   +  +L         E  T           +  +    +  +      PG
Sbjct: 138 PVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPG 197

Query: 257 LRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYW 300
           + +  +I        FE++ + +                  A+W
Sbjct: 198 IFTAEDIELYFP--DFEILSQGEGLFQSIHKLPDGNYATPPAFW 239

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 69.7 bits (170), Expect = 5e-14
 Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 15/120 (12%)

Query: 102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA 161
           S  D     +     L  +    R+L+ GCG G         + A       +   +  A
Sbjct: 30  SGPDPELTFDLWLSRL--LTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLA 86

Query: 162 RLHNKKAGLDSLCEVVCGNFLKMPFEDNH-FDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
           R +   A +            ++P      F    S                +  +  P 
Sbjct: 87  RANAPHADV-----YEWNGKGELPAGLGAPFGLIVSRRGPTSV------ILRLPELAAPD 135

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 26/184 (14%)

Query: 115 VDLI----DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
           +DL      ++ G  +LDVGCG G  M         NVVG+T+++ Q N  +     +  
Sbjct: 53  IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN 112

Query: 171 DSLCEVVCGNFLKMPFED--NHFDGAYSIEATCH--APKLEDVYAEVFRVLKPGSLYV-- 224
                      L   +E      D   SI A  H    + +  ++   R+L    + +  
Sbjct: 113 LRSKR-----VLLAGWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 167

Query: 225 ----SYEWVTTDKYEAENKEHVDIIQGIER----GDALPGLRSYAEITEIAKRVGFEVVK 276
                +     ++    +      ++ I      G  LP +     + E A   GF V +
Sbjct: 168 TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP---MVQECASANGFTVTR 224

Query: 277 EKDL 280
            + L
Sbjct: 225 VQSL 228

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 68.8 bits (168), Expect = 7e-14
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 108 RLHE---EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARL 163
            L++      V ++      +++D+GCG G  +  +        + G+ ++   + RA+ 
Sbjct: 12  NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKD 71

Query: 164 HNKKAGLDSLC----EVVCGNFLKMPFEDNHFDGAYSIEATCH--APKLEDVYAEVFRVL 217
             K   L  +      +   + +      + +D A  IE   H    +L+     +F   
Sbjct: 72  RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFT 131

Query: 218 KPGSLYVS 225
           +P ++ VS
Sbjct: 132 RPQTVIVS 139

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 115 VDLI----DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
             L     +++ G  +LD+GCG G  MR   A    NV+G+T++E Q    +    +   
Sbjct: 61  RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS 120

Query: 171 DSLCEVVCGNFLKMPFED--NHFDGAYSIEATCHAPKLE--------DVYAE-VFRVLKP 219
               E          +E+     D   S+ A  H             D + +  + +   
Sbjct: 121 PRRKE-----VRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD 175

Query: 220 GSLYV------SYEWVTTDKYEAENKEHVDIIQGIER----GDALPGLRSYAEITEIAKR 269
               +        +    +         +  I+ I      G  LP +    ++   +  
Sbjct: 176 DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRIS---QVDYYSSN 232

Query: 270 VGFEVVKEKDL 280
            G++V +   +
Sbjct: 233 AGWKVERYHRI 243

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 20/181 (11%)

Query: 115 VDLI----DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
           VDL     D+K G  +LD+GCG G  MR        NV+G+T+++ Q  R          
Sbjct: 79  VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT 138

Query: 171 DSLCEVVCGNFLKMPFED--NHFDGAYSIEATCH--APKLEDVYAEVFRVLKPGSLYVSY 226
           +   +      L   +ED     D   SIEA  H      +D +   F ++         
Sbjct: 139 NRSRQ-----VLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 193

Query: 227 EWVTTDKYEAENKEHVDIIQGIERGDAL-----PG--LRSYAEITEIAKRVGFEVVKEKD 279
             V+   YE   +      +       +     PG  L S   + E  ++ GF V +   
Sbjct: 194 SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLS 253

Query: 280 L 280
           L
Sbjct: 254 L 254

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 40/193 (20%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           V+ G RI D+GCG G     +A H    V G+ ++E  +  A+    +       +    
Sbjct: 31  VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQ 86

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPKLED---VYAEVFRVLKPGSLYV------------ 224
           +  ++   +         ++  +     D    +    R+L  G   +            
Sbjct: 87  DMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL 146

Query: 225 -------------SYEWVTTDKYEAENKEHVDII------QGIERGDALPGLRSY--AEI 263
                        SY W      E  +  H             +R D     R+Y   + 
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQY 206

Query: 264 TEIAKRVGFEVVK 276
               +  GF V  
Sbjct: 207 ITWLREAGFRVCA 219

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 66.3 bits (162), Expect = 5e-13
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLH 164
           + TR H E+ ++ + V    + LD+GCG G     +AA+   +V     N   +      
Sbjct: 16  ELTRTHSEV-LEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERI 73

Query: 165 NKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSL 222
                LD+L      +   + F D  +D   S           +  + A + R  KPG  
Sbjct: 74  KSIENLDNL-HTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131

Query: 223 YVSYEWVTTDKYEAE 237
            +    + T  Y   
Sbjct: 132 NLIVAAMDTADYPCT 146

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 37/190 (19%), Positives = 58/190 (30%), Gaps = 45/190 (23%)

Query: 122 AGDRILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
               +LD+GCG G    A A A       G+ +++  +  A     +            +
Sbjct: 85  KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTF------CVAS 138

Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV------SYEWVTTDKY 234
             ++PF D   D    I A C          E+ RV+KPG   +       +        
Sbjct: 139 SHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLMELKGLI 191

Query: 235 EAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP---PAQPWWTR 291
             E   H    + +E                     GF + +  +L  P           
Sbjct: 192 YNEVHLHAPHAEQLE---------------------GFTLQQSAELCYPMRLRGDEAVAL 230

Query: 292 LKMGRFAYWR 301
           L+M  FA WR
Sbjct: 231 LQMTPFA-WR 239

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           + L++ + G+ ILD+GCG G     IA    A V+G       + +AR +          
Sbjct: 50  LQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPH------L 102

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
                +       D   D  +S        + E   A + + LK G
Sbjct: 103 HFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSG 147

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 63.0 bits (153), Expect = 7e-12
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG 169
             +  V + +     +IL +  G G     +A+     V  +  +   + +A+   ++ G
Sbjct: 17  PNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKG 75

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
           +      V  N        + ++G  SI     +   + +Y +V++ LKPG
Sbjct: 76  VK--ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPG 124

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 65.6 bits (159), Expect = 7e-12
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 108 RLHE---EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRA- 161
            L +   E A+  I   +   ++D GCG G  + ++  +      ++G+ I+   + RA 
Sbjct: 704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAA 763

Query: 162 -RLHNKKAGLDS---LCEVVCGNFLKMPFEDNHFDGAYSIEATCH--APKLEDVYAEVFR 215
             LH K            +  G+ L+     +  D    +E   H    +  +   +V  
Sbjct: 764 KMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLS 823

Query: 216 VLKPGSLYVS 225
           +  P  L VS
Sbjct: 824 LFHPKLLIVS 833

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 53/192 (27%)

Query: 52  KEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHE 111
            EYW                  D  Y    D   + W   F                   
Sbjct: 7   VEYW------------------DQRYQGAADSAPYDWFGDFS-----------------S 31

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
             A+   +++  DRIL +GCG       +      NV  +  +   V   +         
Sbjct: 32  FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP-- 89

Query: 172 SLCEVVCGNFLKMPFEDNHFDGAYS---------------IEATCHAPKLEDVYAEVFRV 216
                   +  K+ F    FD                     ++     ++ V +EV RV
Sbjct: 90  -QLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV 148

Query: 217 LKPGSLYVSYEW 228
           L PG  ++S   
Sbjct: 149 LVPGGRFISMTS 160

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 15/191 (7%)

Query: 49  DNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATR 108
           D+  + WK   +P +         +     ++  +Y          +   P         
Sbjct: 101 DSIHQLWKGTTQPMKLNTRPSTGLLRH---ILQQVYNHSVTDPEKLNNYEPFSPEVYGET 157

Query: 109 LHEEMA--VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEY-------QV 158
             + +A  +D I +   D  +D+G GVG  +  +AA +   +  G+   +          
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD 217

Query: 159 NRARLHNKKAGL-DSLCEVVCGNFLKMPFEDNHFDGA-YSIEATCHAPKLEDVYAEVFRV 216
              R   K  G   +   +  G+FL   + +   + +   +      P+++    E F  
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 277

Query: 217 LKPGSLYVSYE 227
           +K G   VS +
Sbjct: 278 MKEGGRIVSSK 288

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 61.9 bits (150), Expect = 3e-11
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 43/222 (19%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
            K   R+LD+GCG G  +           +G+ INE  +                 VV  
Sbjct: 39  FKGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGKFN---------VVKS 88

Query: 180 NFLKM--PFEDNHFDGAYS---IEATCHAPKLEDVYAEVFRVLKP-GSLYVS---YEWVT 230
           + ++      D + DG      +E      +L ++ +  +  +K    + +       + 
Sbjct: 89  DAIEYLKSLPDKYLDGVMISHFVEHL-DPERLFELLSLCYSKMKYSSYIVIESPNPTSLY 147

Query: 231 TDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWT 290
           +      +  H   +                 +  I + +GF  VK +   +        
Sbjct: 148 SLINFYIDPTHKKPV-------------HPETLKFILEYLGFRDVKIEFFEECEELTKLA 194

Query: 291 RLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADY 332
           ++     +     ++   +  L          + +LF   DY
Sbjct: 195 KIDSNTVSEEVIRVINENIEKL----------NRILFGPQDY 226

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 41/176 (23%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
           K    +LD+GC   G + A    +   V GI        +A+             +    
Sbjct: 31  KEWKEVLDIGCS-SGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDH------VVLGDIE 83

Query: 181 FLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAEVFRVLKP-GSLYVS-----YEWVTT 231
            + MP+E+  FD       +E   H      V  +V   +K  G +  S     +  V  
Sbjct: 84  TMDMPYEEEQFDCVIFGDVLE---HLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLA 140

Query: 232 DKYEAE---------NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK 278
                          +K H+                ++ E+  +  + G+ + K  
Sbjct: 141 PLLAGNWTYTEYGLLDKTHIRFF-------------TFNEMLRMFLKAGYSISKVD 183

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 7/152 (4%)

Query: 86  WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR 145
                 F+           + T +H ++      +    ++LD+GCG G     ++    
Sbjct: 85  LECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPC-KVLDLGCGQGRNSLYLSLLG- 142

Query: 146 ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH--A 203
            +V     NE  +       +K  L+        +         ++D   S         
Sbjct: 143 YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANI-QENYDFIVSTVVFMFLNR 199

Query: 204 PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE 235
            ++  +   +      G   +    ++TD   
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP 231

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 38/190 (20%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
              D  LD+ CG G     +      N   + +++  ++ A    +  GL     + C +
Sbjct: 36  LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLK--PRLACQD 92

Query: 181 FLKMPFEDNHFDGAYSI-EATCHAPKLED---VYAEVFRVLKPGSLYV-------SYEWV 229
              +   +  FD      ++T +    +D    +  V   LK G +++           V
Sbjct: 93  ISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQV 151

Query: 230 TTDKYEAENKEHVDIIQ---------------------GIERGDALPGLRSY--AEITEI 266
             +     + + V                           +R D     R+Y   +I + 
Sbjct: 152 LGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKY 211

Query: 267 AKRVGFEVVK 276
            K     ++ 
Sbjct: 212 LKHGQLNILD 221

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 58.8 bits (141), Expect = 3e-10
 Identities = 34/229 (14%), Positives = 64/229 (27%), Gaps = 33/229 (14%)

Query: 66  KEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG--KSHRDATRLHEEMAVDLIDVKAG 123
             K+ DF   F   V +++            S+PG          L E        V A 
Sbjct: 14  IAKLGDF--IFDENVAEVFPD------MIQRSVPGYSNIITAIGMLAER------FVTAD 59

Query: 124 DRILDVGCGVGGPMRAIAAHSR---ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
             + D+GC  G    +   +       ++GI  ++  V R R H      +   E++C +
Sbjct: 60  SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND 119

Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA---- 236
              +  ++                    +  +++  L P  + V  E    +  +     
Sbjct: 120 IRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLL 179

Query: 237 -ENKEHVDIIQGIERGDALPGLRSY---------AEITEIAKRVGFEVV 275
            +         G    +      +                 K VGF  V
Sbjct: 180 IDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQV 228

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           VD   +  G R L  GCG G  + A+A+  R  VVG+ I+E  + +A      +      
Sbjct: 60  VDTSSLPLG-RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYF 117

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTD 232
             V  +       +  FD  +     C             ++ +LKP    ++  +  TD
Sbjct: 118 SFVKEDVFTWRPTE-LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITD 176

Query: 233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
                                 P     +   E+   +GF+ V      +       TR 
Sbjct: 177 HVGGP-----------------PYKVDVSTFEEVLVPIGFKAVS----VEENPHAIPTRK 215

Query: 293 KMGRFAYWR 301
              +   W+
Sbjct: 216 GKEKLGRWK 224

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 24/194 (12%), Positives = 51/194 (26%), Gaps = 15/194 (7%)

Query: 93  HFSPSIPGKS--HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG 150
               +   K   + D   +H  M            +L++G   G     +  H   ++  
Sbjct: 11  EIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF-NDITC 69

Query: 151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVY 210
           +  +E  ++ A+   K          +   F         +D         H      + 
Sbjct: 70  VEASEEAISHAQGRLKDG-----ITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVALL 123

Query: 211 AEVF-RVLKP-GSLYVSY-EWVTTDKYEAENKEHVDIIQGIERGDALPG-LRSY--AEIT 264
             +    L   G L++         +  A     +     +   +   G   +Y    + 
Sbjct: 124 KRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183

Query: 265 EIAKRVGFEVVKEK 278
             A R G +V    
Sbjct: 184 RDASRAGLQVTYRS 197

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 12/140 (8%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLD-SLCEVV 177
                ++DVGCG G     +A   +    ++G  ++   +  A +  + +          
Sbjct: 35  GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK 94

Query: 178 CGNFLKMPF------EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS--LYVSYEWV 229
             +     F      +    D   ++E   H    E      +  L+         Y   
Sbjct: 95  ISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFEKFQRSAYANLRKDGTIAIWGYADP 153

Query: 230 TTDKYEAENKEHVDIIQGIE 249
               Y   +   +++  G +
Sbjct: 154 IFPDYPEFDDLMIEVPYGKQ 173

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 23/178 (12%), Positives = 44/178 (24%), Gaps = 20/178 (11%)

Query: 108 RLHEEMAVDL---IDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARL 163
                 A DL   + ++      D+GCG G     +        + GI  ++  + +A  
Sbjct: 16  DERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD 75

Query: 164 HNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLY 223
                           +           D  Y+       P    V +++   L+ G + 
Sbjct: 76  RLPNT------NFGKADLATWKP-AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVL 128

Query: 224 VSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSY-------AEITEIAKRVGFEV 274
                      E  +    +   G    DA  G           ++           V
Sbjct: 129 AVQMPDNLQ--EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRV 184

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
                 +   R+LD+ CG G P   +A      VVG+ ++E  +  AR   K+  L    
Sbjct: 34  FKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK--I 90

Query: 175 EVVCGNFLKMPFEDNHFDGAYSI-EATCH--APKLEDVYAEVFRVLKPGSLYV 224
           E + G+ L++ F  N FD          +     L  ++++V   LKPG +++
Sbjct: 91  EFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 21/178 (11%)

Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRA-------NVVGITINEYQVNRAR------- 162
           + D K+  +IL +G G G     I +  +A       N   +  +  Q+ + +       
Sbjct: 47  IGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS 106

Query: 163 -LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP-G 220
            L N K            + +    E   +D  + I+   +   +         +L    
Sbjct: 107 NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA 166

Query: 221 SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK 278
            + +    +        +K          + D      +  ++T++   +G +     
Sbjct: 167 KMLI----IVVSGSSGWDKLWKKYGSRFPQDDLCQ-YITSDDLTQMLDNLGLKYECYD 219

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 38/210 (18%)

Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
            +DA    E              +L++  G+G             V  + ++   +   R
Sbjct: 63  IQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFR 121

Query: 163 LHNKKAGLD--SLCEVVCGNFLKMPFEDNHFDGAYSIEAT-CHAPK--LEDVYAEVFRVL 217
               +A  D    C +V G+       D  F        +     +     +YA V   L
Sbjct: 122 KRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHL 180

Query: 218 KPGSLYV------------------------SYEWVTTDKYE-AENKEHVDIIQGIERGD 252
           +PG  ++                           +V   ++  AE  + + I    E  D
Sbjct: 181 EPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTD 240

Query: 253 ALPG----LRSY--AEITEIAKRVGFEVVK 276
                    R     ++     R GF+V+ 
Sbjct: 241 PFVVCTHRRRLLAPDQVVRELVRSGFDVIA 270

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 55.1 bits (132), Expect = 7e-09
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDS 172
           +    ++ G  IL+VG G G     I      +  +  +  +E  + +A  +  +     
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162

Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227
                  +      +   +D           P   +   ++  ++KPGS+   Y 
Sbjct: 163 NVRTSRSDIADFISDQM-YDAVI-----ADIPDPWNHVQKIASMMKPGSVATFYL 211

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 26/191 (13%), Positives = 48/191 (25%), Gaps = 45/191 (23%)

Query: 123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL 182
              +LDV CG G  +R +A      V G+ ++   +  AR  N  A       +  G+  
Sbjct: 51  AASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPDA------VLHHGDMR 103

Query: 183 KMPFEDNHFDGAYSIEAT-CHAPKLED---VYAEVFRVLKPGSLYV-------------- 224
                   F     + ++  H     +           + P  + V              
Sbjct: 104 DFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGY 162

Query: 225 -----------SYEWVTTDKYEAENKEHVDII------QGIERGDALPGLRSY--AEITE 265
                      +   V+    E E              +GI   +    +  +   +   
Sbjct: 163 VAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYER 222

Query: 266 IAKRVGFEVVK 276
                G  V  
Sbjct: 223 AFTAAGLSVEF 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 43/357 (12%), Positives = 98/357 (27%), Gaps = 122/357 (34%)

Query: 42  ISAEEVEDNYKE----------YWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQS 91
           +S EE++               +W    + +E  ++    FV+    L  + Y++     
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----FVEEV--LRIN-YKFLM-SP 97

Query: 92  FHFSPSIPG-----------KSHRDA--------TRLHEEMAVD--LIDVKAGDRIL--- 127
                  P            + + D         +RL   + +   L++++    +L   
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 128 DVGCG----VGGPMRAIAAHSRA--NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181
            +G G          +     +    +  + +         L      L  L   +  N+
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNW 213

Query: 182 LKMPFEDNHFDGAYSIEATCHAPK------------------LEDVY-AEVFRVLKPGS- 221
                     D + +I+   H+ +                  L +V  A+ +        
Sbjct: 214 TSRS------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 222 -LYVSYEWVTTDKYEAENKEHVDIIQGIERG-----DALPGLRSYAEITEI-AKRVGFEV 274
            L      +TT       K+  D +                L +  E+  +  K +    
Sbjct: 268 IL------LTT-----RFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLD--- 312

Query: 275 VKEKDLAKPPAQ-----PW-----WTRLK--MGRFAYWR-------NHILVTILAAL 312
            + +DL   P +     P         ++  +  +  W+         I+ + L  L
Sbjct: 313 CRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 31/274 (11%), Positives = 68/274 (24%), Gaps = 79/274 (28%)

Query: 4   LALFCTGALLAGGL----YWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFK 59
           L++      +  GL     W             +   +   S++  E  +  K + +   
Sbjct: 330 LSII--AESIRDGLATWDNW-------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 60  RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID 119
            P       +P          T +    W                        +   L  
Sbjct: 381 FPPSA---HIP----------TILLSLIWFDVIKSDV--------------MVVVNKLHK 413

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
               ++              I+  S      + +     N   LH       ++ +    
Sbjct: 414 YSLVEK--------QPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 180 NFLKMPFEDN----HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE 235
           + L  P+ D     H    +      H   +E  + E   + +   +++ + ++      
Sbjct: 462 DDLIPPYLDQYFYSHI--GH------HLKNIE--HPERMTLFR--MVFLDFRFL------ 503

Query: 236 AENK-EHVDIIQGIERG--DALPGLRSYAE-ITE 265
            E K  H            + L  L+ Y   I +
Sbjct: 504 -EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQVNRARLHNKKAG 169
            + V    +  GD I++ G G G     +A        VV   I E     A  + K AG
Sbjct: 83  ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG 142

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227
            D    +   + +    E+ + D           P+ E V     + LKPG  +V+Y 
Sbjct: 143 FDDRVTIKLKD-IYEGIEEENVDHVI-----LDLPQPERVVEHAAKALKPGGFFVAYT 194

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 27/193 (13%), Positives = 49/193 (25%), Gaps = 45/193 (23%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
                +LDV CG G  +         +  G+ ++E  +  AR     A       +  G+
Sbjct: 39  PEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRLPDA------TLHQGD 91

Query: 181 FLKMPFEDNHFDGAYSI-EATCHAPKLED---VYAEVFRVLKPGSLYV------------ 224
                     F    S+  +  +    E+     A     L+PG + V            
Sbjct: 92  MRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFAD 150

Query: 225 -------------SYEWVTTDKYEAENKEHVDII------QGIERGDALPGLRSY--AEI 263
                        +   V+    E                +G+     +  +  +  AE 
Sbjct: 151 GWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEY 210

Query: 264 TEIAKRVGFEVVK 276
                  G  V  
Sbjct: 211 EAAFTAAGLRVEY 223

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 16/150 (10%)

Query: 87  GWGQSFHFSPSIPGK-------SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRA 139
               ++                 +      H ++    +   A    L++GC  G     
Sbjct: 9   SVDNTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEK 68

Query: 140 IAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA 199
           +A H    +  I +    + RA           +      + L+       FD     E 
Sbjct: 69  LAPHC-KRLTVIDVMPRAIGRACQRT--KRWSHI-SWAATDILQFS-TAELFDLIVVAEV 123

Query: 200 TCHAP---KLEDVYAEVFRVLKP-GSLYVS 225
             +     ++      + ++L P G L   
Sbjct: 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 3/106 (2%)

Query: 120 VKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178
           V  G  +LDVG      P+  +      + +   + E     A  + +  GL    +V  
Sbjct: 13  VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72

Query: 179 GNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
            N L    E +         A      +  +  E    L      +
Sbjct: 73  ANGLAAFEETDQVSVI--TIAGMGGRLIARILEEGLGKLANVERLI 116

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 12/114 (10%)

Query: 119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
            VK GD ++D  CG G     +A+       V G  I +  +           L     +
Sbjct: 19  FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTL 78

Query: 177 VCGNFLKMP-FEDNHFDGAYSI---------EATCHAPKLEDVYAEVFRVLKPG 220
           +      M  + D                    +          ++   +L  G
Sbjct: 79  IKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG 132

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
           E +A  +      D ++D  CGVGG     A      V+ I I+  ++  AR + +  G+
Sbjct: 67  EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYGI 125

Query: 171 DSLCEVVCGNFLK 183
               E +CG+FL 
Sbjct: 126 ADKIEFICGDFLL 138

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 16/125 (12%)

Query: 116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRA--RLHNKKAGLDS- 172
             +D     ++L +  G G  +        A +V    +   + R   R +   +G+ + 
Sbjct: 42  TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTK 101

Query: 173 ----------LCEVVCGNFLKMPFEDNHFDG---AYSIEATCHAPKLEDVYAEVFRVLKP 219
                     +      + ++  F    F+     ++I  + H      V   +  +   
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS 161

Query: 220 GSLYV 224
           G   +
Sbjct: 162 GGKVL 166

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 27/154 (17%)

Query: 89  GQSFHFSPSIPGKSHRDATRLHEEMA---VDLIDVKAGDRILDVGCGVGGPM--RAIAAH 143
            +                  L   +A   + L D + G R+LD   G G      A    
Sbjct: 171 ERPLSR----RFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG 226

Query: 144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD--------GAY 195
             + V    ++E ++  AR     +GL      +  +   +P      D        G  
Sbjct: 227 PTSPVYAGDLDEKRLGLAREAALASGLSW-IRFLRADARHLPRFFPEVDRILANPPHG-- 283

Query: 196 SIEATCHAPKLEDVYA----EVFRVLKPG-SLYV 224
                     L  +Y         +L PG  + +
Sbjct: 284 --LRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 21/110 (19%)

Query: 111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL 170
           + +A DL    A   + D GCG       +A+  R  V    +                 
Sbjct: 56  DRIARDLRQRPASLVVADFGCGDC----RLASSIRNPVHCFDLASLDPR----------- 100

Query: 171 DSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
                V   +  ++P ED   D A    +      + D   E  RVLKPG
Sbjct: 101 -----VTVCDMAQVPLEDESVDVAVFCLS-LMGTNIRDFLEEANRVLKPG 144

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNR 160
            +R+ +     + V   +   G  +LD+GC VG    +IA       +VG+ I+   ++ 
Sbjct: 26  GYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHS 85

Query: 161 ARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP 219
           AR + +    + L  +        P  +         + +C    L      +     P
Sbjct: 86  ARQNIRHYLSEEL-RLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVP 143

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 30/237 (12%), Positives = 59/237 (24%), Gaps = 34/237 (14%)

Query: 52  KEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHE 111
              W  + R  E  + + P           D        +F+        +    ++   
Sbjct: 119 YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRAR---DAFN-------DAMVRLSQPMV 168

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA---HSRANV-----VGITINEYQVNRARL 163
           ++  +L        ++D+  G G  +  +          +               + AR 
Sbjct: 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT--------RDAARK 220

Query: 164 HNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEATCH---APKLEDVYAEVFRVLKP 219
                 L    E    N L    FE    D    +    H   A +  +V      ++KP
Sbjct: 221 TIHAHDLGGRVEFFEKNLLDARNFEGGAAD-VVMLNDCLHYFDAREAREVIGHAAGLVKP 279

Query: 220 GSLYVSYEWV-TTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
           G   +        D+          +   +        L     I  + +  G  V 
Sbjct: 280 GGALLILTMTMNDDRVTPALSADFSLHMMVNTNHG--ELHPTPWIAGVVRDAGLAVG 334

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 9/124 (7%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQVNRAR--LHNKK 167
              V   D+  G R+L+ G G G    ++         V+           AR  +    
Sbjct: 89  AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY 148

Query: 168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227
                   +V  +       D   D A             +V   V R+L  G + + Y 
Sbjct: 149 GQPPDNWRLVVSDLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMVYV 203

Query: 228 WVTT 231
              T
Sbjct: 204 ATVT 207

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 120 VKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178
           +   +RI D+G      P  A+   + +  +   + +     A+   + +GL    +V  
Sbjct: 19  ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78

Query: 179 GNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
           GN L +  + +  D    + A      +  +  E    L   +  +
Sbjct: 79  GNGLAVIEKKDAIDTI--VIAGMGGTLIRTILEEGAAKLAGVTKLI 122

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 17/138 (12%)

Query: 103 HRDATRLHEEMA--VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
               +R  E  A  + L+      R+LDV CG G     +      +V  +  ++  +  
Sbjct: 36  GDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKY 94

Query: 161 ARLHNKKAGLDSL---CEVVCGNFLKMPFE---DNHFDGAYSI--------EATCHAPKL 206
           A         +       +   N+L +  +    + FD    +        ++     + 
Sbjct: 95  ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 154

Query: 207 EDVYAEVFRVLKPGSLYV 224
                 +  +++PG L V
Sbjct: 155 RLALKNIASMVRPGGLLV 172

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 22/201 (10%), Positives = 63/201 (31%), Gaps = 38/201 (18%)

Query: 104 RDATRLHEEMAVDLIDVKA--GDRILDVGCGVGGPMRAIAA---HSRANV-----VGITI 153
                   ++   L++       ++LD+    G    A+A    ++         V    
Sbjct: 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASV---- 200

Query: 154 NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH---APKLEDVY 210
               +  A+ + +  G+ S    + G+  ++ + ++ +D    +    H       E + 
Sbjct: 201 ----LEVAKENARIQGVASRYHTIAGSAFEVDYGND-YD-LVLLPNFLHHFDVATCEQLL 254

Query: 211 AEVFRVLKPGSLYVSYEWV-TTDKYEAENKEHVDII------QGIERGDALPGLRSYAEI 263
            ++   L      + ++++  +D+    +     ++       G           ++AE 
Sbjct: 255 RKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAY--------TFAEY 306

Query: 264 TEIAKRVGFEVVKEKDLAKPP 284
             +    GF   +   L    
Sbjct: 307 ESMFSNAGFSHSQLHSLPTTQ 327

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
                    K G R+L+VG G+      +          I  N+    R R    +    
Sbjct: 51  HALAAAASSK-GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-- 107

Query: 172 SLCEVVCGNF--LKMPFEDNHFDGAY-----SIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
                + G +  +     D HFDG         E T H  +   +    FR+LKPG +  
Sbjct: 108 HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 167

Query: 225 SY 226
             
Sbjct: 168 YC 169

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 16/125 (12%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVN-----------RAR 162
                +K GD  +D+G GVG  +   A     A   G  I +   +           R +
Sbjct: 235 YQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK 294

Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA--YSIEATCHAPKLEDVYAEVFRVLKPG 220
           L+  +    ++   +  +F+                +        L     ++ +  K G
Sbjct: 295 LYGMRLN--NVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVG 352

Query: 221 SLYVS 225
              +S
Sbjct: 353 CKIIS 357

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 3/106 (2%)

Query: 120 VKAGDRILDVGCGVGG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC 178
           V  G R+LDVG      P+  +        +   +       A  +  + GL S  +V  
Sbjct: 19  VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78

Query: 179 GNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
            N L    E ++ D             + D+       L+     V
Sbjct: 79  ANGLSAFEEADNIDTI--TICGMGGRLIADILNNDIDKLQHVKTLV 122

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 112 EMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG 169
            M+ D +   +     ++D   G G     +A  S+  V    + E  + +        G
Sbjct: 10  HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLG 68

Query: 170 LDSL-----CEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVY----AEVFRVLKPG 220
           +++            ++++ P     F+  Y   A                ++   L+ G
Sbjct: 69  IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG 128

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 19/191 (9%)

Query: 106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRAR 162
            +      A++++      R+LD+G   G                +V +     Q+   R
Sbjct: 163 YSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL---PQQLEMMR 219

Query: 163 LHNKKAGLDSLCEVVCGNFLK--MPFEDNHFDGAYSIEATCH---APKLEDVYAEVFRVL 217
                            N L   +PF    FD A  +          ++  +   V + +
Sbjct: 220 KQTAGLSGSERIHGHGANLLDRDVPFPTG-FD-AVWMSQFLDCFSEEEVISILTRVAQSI 277

Query: 218 KPGSLYVSYEWVT-TDKYEAENKEHVDI---IQGIERGDALPGLRSYAEITEIAKRVGFE 273
              S     E +    +YE  +     I      +  G++   +    ++    +  G E
Sbjct: 278 GKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNS--KMFHSDDLIRCIENAGLE 335

Query: 274 VVKEKDLAKPP 284
           V + +D     
Sbjct: 336 VEEIQDNIGLG 346

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 40/199 (20%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLH------NKKAGLDSLC 174
           K    +LD+GCG GG +          +V   I +  V + +         + +      
Sbjct: 33  KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA 92

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATC----------HAPKLEDVYAEVFRVLKPGSLYV 224
           E +  +  K    D   D     +                + + +       L PG  ++
Sbjct: 93  EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI 152

Query: 225 SYEW--------VTTDKYEAENKEHVDIIQGIERGDALPG----------------LRSY 260
                       +   + E+   E   +    +    L G                L  +
Sbjct: 153 GTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYF 212

Query: 261 AEITEIAKRVGFEVVKEKD 279
             + E+AK+   ++V +K 
Sbjct: 213 PLLNEMAKKYNMKLVYKKT 231

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 119 DVKAGDRILDVGCGVGGPMRAI-AAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVV 177
           +    D  +DVGCG GG    +  A     V  I  N   ++   ++ ++ GL     ++
Sbjct: 30  EPGKNDVAVDVGCGTGGV--TLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87

Query: 178 CGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
            G+  +   +    D A          +L+++   +   LKPG
Sbjct: 88  EGDAPEALCKIPDIDIAVVGG---SGGELQEILRIIKDKLKPG 127

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 8/123 (6%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQVNRARLHNKKAGLDS 172
             ++DVK GDRI+D G G G     +A    S   V      E     A  +  K GL  
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 164

Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232
              +   +          FD           P   +   + +  LK G  + +    T  
Sbjct: 165 RVTIKVRDI------SEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQ 218

Query: 233 KYE 235
             E
Sbjct: 219 VQE 221

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 121 KAGDRILDVGCGVGGPMRAIA-AHSRANVVGITINEYQVN----RARLHNKKAGLDSLCE 175
           +     +D+G G G  +  +A        +GI   +  +     +      K GL ++  
Sbjct: 23  QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV- 81

Query: 176 VVCGNFLKMPFEDNHFDGAYSIEATCHAPKLE--------DVYAEVFRVLKPGSLYVSYE 227
            V      +PFE    + A SI        L         D+ + V  + K  + +    
Sbjct: 82  FVIAAAESLPFE--LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE--- 136

Query: 228 WVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK-EKDLAKPPAQ 286
              T   ++  +  +          A      Y      +   GF +   ++   +   Q
Sbjct: 137 -FVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNS---GFRIDDVKELDNEYVKQ 192

Query: 287 P---WWTRLKMGRF 297
               W  RL  GR 
Sbjct: 193 FNSLWAKRLAFGRK 206

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-DSL 173
           V+ + V   D ILD+GCG  G +    A    +     IN   +  A+ + K   L +  
Sbjct: 45  VENVVVDKDDDILDLGCGY-GVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYD 103

Query: 174 CEVVCGNFLKMPFEDNHFDGAYS---IEATCHAPK--LEDVYAEVFRVLKP-GSLYV 224
             VV  +  +   +D  ++   +   I     A K  L  +  E   +LK  G ++V
Sbjct: 104 IRVVHSDLYE-NVKDRKYNKIITNPPI----RAGKEVLHRIIEEGKELLKDNGEIWV 155

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 104 RDATRLHEEMA---VDLIDVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQV 158
           R AT  + + A   V L+D+  G R+L+ G G GG    +A     +  V       + +
Sbjct: 75  RSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL 134

Query: 159 NRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK 218
            +A  + +            G   +   E+  +DG           +   V  +    LK
Sbjct: 135 AQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVA-----LDLMEPWKVLEKAALALK 189

Query: 219 PGSLYVSY 226
           P    V+Y
Sbjct: 190 PDRFLVAY 197

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 26/188 (13%)

Query: 102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA---HSRANV-----VGITI 153
            HR   +   ++ ++   +    +++DVG G+G    A+        + +          
Sbjct: 170 IHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA---- 225

Query: 154 NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE--DNHFDGAYSIEATCHAPKLEDVYA 211
               ++    +  + G+      +  +  K  +   D     A       ++   +    
Sbjct: 226 ----IDLVNENAAEKGVADRMRGIAVDIYKESYPEAD-----AVLFCRILYSANEQLSTI 276

Query: 212 ---EVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK 268
              + F  ++ G   +  + V  D            I G     ++ G +  A   EI +
Sbjct: 277 MCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE 336

Query: 269 RVGFEVVK 276
            +G++ V 
Sbjct: 337 SLGYKDVT 344

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
               +I+D+  G G     ++  ++A +VG+ I E   + A+       L+   E++  +
Sbjct: 48  IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD 107

Query: 181 FLKMP--FEDNHFDGAYS----IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKY 234
             K+         D              + K  + +  + R     +L    + +     
Sbjct: 108 LKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL---EDTIRVAAS 164

Query: 235 EAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276
             +     + +   ER           +I +I ++   E  +
Sbjct: 165 LLKQGGKANFVHRPERLL---------DIIDIMRKYRLEPKR 197

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 116 DLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARL---HNKKAGLD 171
            L+      RI D+G G G    A+AA   +A V     ++     AR        A   
Sbjct: 30  SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS 89

Query: 172 SLCEVVCGNFLKMPFED 188
           +  EV+  +        
Sbjct: 90  ARIEVLEADVTLRAKAR 106

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL--CEVV 177
           ++ G +++D+  G+G    A+ + + +  + I  N+     AR HN    L+      ++
Sbjct: 91  IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAAR-HNIPLLLNEGKDVNIL 148

Query: 178 CGNFLKM--PFEDNHFDGAY 195
            G+F +     +  H D  Y
Sbjct: 149 TGDFKEYLPLIKTFHPDYIY 168

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 15/150 (10%)

Query: 86  WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS- 144
              G  +    +      R    +     +  +       I+D+GCG G     +   + 
Sbjct: 187 KLEGTDWTIH-NHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP 245

Query: 145 RANVVGITINEYQVNRARLHNKKAGLDSL--CEVVCGNFLKMPFEDNHFDGAYS------ 196
           +A VV +  +   V  +RL+ +    ++L  CE +  N L    E   F+          
Sbjct: 246 QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQ 304

Query: 197 -IEATCHAPKLEDVYAEVFRVLKP-GSLYV 224
               T +     +++    R LK  G LY+
Sbjct: 305 QHALTDNV--AWEMFHHARRCLKINGELYI 332

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167
           RL  E A  +  V   D ++D+  GVG    +IA  +   +  I IN + +   + + K 
Sbjct: 181 RLGGERARIMKKVSLNDVVVDMFAGVGP--FSIACKNAKKIYAIDINPHAIELLKKNIKL 238

Query: 168 AGLDSLCEVVCGN 180
             L+     +  +
Sbjct: 239 NKLEHKIIPILSD 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.97
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.97
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.97
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.96
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.96
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.94
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.94
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.94
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.93
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.93
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.93
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.93
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.92
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.92
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.92
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.92
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.91
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.91
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.9
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.9
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.9
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.9
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.89
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.89
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.89
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.89
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.88
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.88
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.88
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.88
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.88
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.88
3ocj_A	305	Putative exported protein; structural genomics, PS	99.88
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.88
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.87
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.87
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.87
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.87
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.86
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.86
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.86
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.85
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.85
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.85
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.85
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.84
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.84
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.84
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.84
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.84
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.84
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.84
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.84
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.84
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.84
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.83
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.83
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.83
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.83
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.83
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.83
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.83
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.82
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.82
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.82
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.82
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.81
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.81
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.81
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.81
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.81
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.81
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.8
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.8
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.8
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.8
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.79
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.79
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.79
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.79
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.78
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.78
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.78
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.78
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.78
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.77
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.77
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.77
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.76
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.76
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.76
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.76
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.76
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.75
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.75
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.75
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.75
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.75
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.74
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.74
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.74
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.74
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.74
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.73
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.73
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.73
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.73
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.72
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.72
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.71
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.71
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.71
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.71
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.71
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.71
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.71
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.71
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.7
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.7
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.7
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.7
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.7
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.69
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.69
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.69
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.68
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.68
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.68
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.68
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.68
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.67
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.67
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.67
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.67
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.67
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.67
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.66
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.66
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.66
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.65
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.65
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.65
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.65
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.65
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.64
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.64
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.64
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.64
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.64
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.64
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.64
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.63
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.63
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.63
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.63
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.63
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.63
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.63
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.62
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.62
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.61
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.61
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.61
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.6
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.59
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.59
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.59
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.59
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.58
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.58
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.58
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.57
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.56
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.56
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.56
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.55
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.55
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.55
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.54
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.53
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.53
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.53
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.53
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.52
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.52
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.52
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.51
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.51
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.49
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.48
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.47
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.46
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.45
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.45
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.45
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.45
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.44
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.44
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.44
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.43
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.43
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.43
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.42
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.42
2o07_A	304	Spermidine synthase; structural genomics, structur	99.42
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.41
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.41
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.4
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.4
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.39
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.39
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.38
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.38
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.37
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.37
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.36
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.36
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.36
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.35
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.34
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.34
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.32
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.31
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.3
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.29
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.29
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.27
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.26
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.26
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.26
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.24
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.19
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.18
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.15
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.12
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.11
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	99.08
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.07
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.06
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.04
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.03
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.02
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.02
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.0
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.99
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.97
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.9
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.88
3lkd_A	542	Type I restriction-modification system methyltrans	98.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.87
3khk_A	544	Type I restriction-modification system methylation	98.87
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.87
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.81
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.78
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.77
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.77
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.6
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.59
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.58
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.56
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.51
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.49
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.47
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.38
3ufb_A	530	Type I restriction-modification system methyltran	98.37
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.3
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.19
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.16
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.09
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.08
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.04
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.96
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.81
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.78
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.51
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.41
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.33
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.24
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.17
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.15
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.9
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.86
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.74
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.69
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.6
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.52
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.5
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.5
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.41
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.39
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.35
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.33
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.31
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.3
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.25
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.17
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.15
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.14
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.11
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.1
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.08
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.04
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.02
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.01
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.93
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.93
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.93
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.91
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.87
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.83
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.82
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.74
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.69
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.66
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.61
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.6
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.57
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.55
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.51
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.49
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.47
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.41
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.35
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.33
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.25
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.23
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.22
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.2
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.18
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.13
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.07
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.05
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.88
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.86
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.85
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.65
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.61
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.57
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.48
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.38
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.31
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.24
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.23
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.16
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.15
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.98
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.56
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	93.53
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.17
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.11
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.02
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.9
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	92.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.63
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	92.58
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.35
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.2
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.88
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	91.74
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.7
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.5
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.41
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.78
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	90.74
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	90.7
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.55
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.19
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	90.16
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	89.96
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.87
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.53
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.48
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.19
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.11
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.93
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	88.74
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.68
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.55
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	88.26
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.14
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.82
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	87.72
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	87.51
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	87.48
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.1
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	86.89
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	86.87
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.56
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	85.51
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	85.41
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.19
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	85.13
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	85.05
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	84.99
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	84.93
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	84.67
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	84.23
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	84.09
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.95
1id1_A	153	Putative potassium channel protein; RCK domain, E.	83.93
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	83.84
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	83.61
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	83.6
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	83.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	83.2
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	83.14
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.04
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.02
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	82.81
1xhl_A	297	Short-chain dehydrogenase/reductase family member	82.66
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.6
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	82.17
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	80.94
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.23
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	80.01

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.97  E-value=2e-29  Score=224.37  Aligned_cols=210  Identities=29%  Similarity=0.500  Sum_probs=158.4

Q ss_pred             hhhHHHHhhhhhHHHHHhhcCCceeecCCCCC---CCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC
Q 018194           69 VPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPG---KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR  145 (359)
Q Consensus        69 ~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~  145 (359)
                      ..+.+..|||..+++|+..++..++++.....   ..+.+++....+.+++.+.+.++.+|||||||+|.++..+++..+
T Consensus         5 ~~~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~   84 (273)
T 3bus_A            5 TPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD   84 (273)
T ss_dssp             ------------------CCGGGCCCCCCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC
T ss_pred             cHHHHHHHHcchHHHHHHHcCCCceEEecCCCccccCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence            35678899999999999999988776443221   478888999999999999999999999999999999999998667


Q ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          146 ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       146 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++|+|+|+|+.+++.++++....++.++++++.+|+.++++++++||+|++..+++|++++..+++++.++|||||++++
T Consensus        85 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i  164 (273)
T 3bus_A           85 VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI  164 (273)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence            89999999999999999999988888889999999999998889999999999999999999999999999999999999


Q ss_pred             EEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          226 YEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      .++........   ........+........+.+.+++.++|+++||++++...+.
T Consensus       165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          165 ADFVLLAPVEG---AKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             EEEEESSCCCH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred             EEeeccCCCCh---hHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECc
Confidence            88765432221   111111111111123356789999999999999999988874

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.97  E-value=6.7e-30  Score=230.37  Aligned_cols=209  Identities=25%  Similarity=0.375  Sum_probs=172.6

Q ss_pred             cchhhHHHHhhhhh--HHHHHhhcC-CceeecCCC-C--CCCHHHHHHHHHHHHHHhc----CCCCCCEEEEECCCCChH
Q 018194           67 EKVPDFVDTFYNLV--TDIYEWGWG-QSFHFSPSI-P--GKSHRDATRLHEEMAVDLI----DVKAGDRILDVGCGVGGP  136 (359)
Q Consensus        67 ~~~~~~v~~~yd~~--~~~y~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~  136 (359)
                      ....+.+..|||..  .++|+..|+ ++++++... +  ...+...+....+.++..+    .+.++.+|||||||+|.+
T Consensus        17 ~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~   96 (297)
T 2o57_A           17 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGA   96 (297)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHH
T ss_pred             HHHHHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHH
Confidence            34456788999997  599998884 666664432 2  5678888888888899888    888999999999999999


Q ss_pred             HHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhc
Q 018194          137 MRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRV  216 (359)
Q Consensus       137 ~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  216 (359)
                      +..+++..+++|+|+|+|+.+++.++++....++.++++++++|+.++|+++++||+|++..+++|++++..+++++.++
T Consensus        97 ~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~  176 (297)
T 2o57_A           97 ARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARV  176 (297)
T ss_dssp             HHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHH
Confidence            99999865789999999999999999999988888899999999999999889999999999999999999999999999


Q ss_pred             cCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          217 LKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       217 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      |||||++++.++.........  ....+....    ..+.+.+..++.++|+++||++++..+++
T Consensus       177 LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          177 LKPRGVMAITDPMKEDGIDKS--SIQPILDRI----KLHDMGSLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             EEEEEEEEEEEEEECTTCCGG--GGHHHHHHH----TCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             cCCCeEEEEEEeccCCCCchH--HHHHHHHHh----cCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence            999999999887665432221  112222222    22346688999999999999999988764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.97  E-value=6.9e-29  Score=224.29  Aligned_cols=264  Identities=18%  Similarity=0.268  Sum_probs=196.7

Q ss_pred             cccchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHH
Q 018194           65 TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIA  141 (359)
Q Consensus        65 ~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~  141 (359)
                      .....++.++.+||..+++|+.++++.+.|+..+   +..++.+++....+.++..+.+.++.+|||||||+|.++..++
T Consensus        12 ~~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la   91 (302)
T 3hem_A           12 QLKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAV   91 (302)
T ss_dssp             CCCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHH
T ss_pred             cccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHH
Confidence            3456788999999999999999999988877654   3567889999999999999999999999999999999999999


Q ss_pred             hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCH---------HHHHHH
Q 018194          142 AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKL---------EDVYAE  212 (359)
Q Consensus       142 ~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------~~~l~~  212 (359)
                      +..+++|+|+|+|+.+++.++++....++.+++++..+|+.++   +++||+|++..+++|++|+         ..++++
T Consensus        92 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~  168 (302)
T 3hem_A           92 AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKK  168 (302)
T ss_dssp             HHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHH
T ss_pred             HhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHH
Confidence            9756899999999999999999999999888999999999876   6899999999999999665         799999


Q ss_pred             HHhccCCCCEEEEEEeeeCcccccCc---------hHHHHHHh-hhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          213 VFRVLKPGSLYVSYEWVTTDKYEAEN---------KEHVDIIQ-GIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       213 ~~~~LkpgG~l~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                      +.++|||||++++.++..........         .....+.. .+..+.   .+.+.+++.++++++||++++.+++..
T Consensus       169 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          169 FYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG---RLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             HHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC---CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             HHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC---CCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence            99999999999998876543211000         00012222 222222   356789999999999999999988743


Q ss_pred             CCCCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCcccccc
Q 018194          283 PPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFT  343 (359)
Q Consensus       283 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  343 (359)
                      +.     .    .....|.........+...+..+...+....+...+......|...++.
T Consensus       246 ~y-----~----~tl~~w~~~~~~~~~~~~~~~~~~~~~~w~~yl~~~~~~f~~~~~~~~q  297 (302)
T 3hem_A          246 NY-----V----PTLNAWADALQAHKDEAIALKGQETCDIYMHYLRGCSDLFRDKYTDVCQ  297 (302)
T ss_dssp             GH-----H----HHHHHHHHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             hH-----H----HHHHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence            21     1    1233344433333222222222223344555556666666666665444

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.96  E-value=1e-27  Score=214.93  Aligned_cols=209  Identities=21%  Similarity=0.260  Sum_probs=170.4

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      ....+.++.+||..+++|+.++++.++|+..+   +...+.+++....+.+++.+.+.++.+|||||||+|.++..+++.
T Consensus         6 ~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   85 (287)
T 1kpg_A            6 KPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK   85 (287)
T ss_dssp             CCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             cccHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCCCHHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHH
Confidence            34567899999999999999999887775543   456788899989999999999999999999999999999999965


Q ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc--CCHHHHHHHHHhccCCCC
Q 018194          144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA--PKLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       144 ~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG  221 (359)
                      .+++|+|+|+|+.+++.++++....++.+++++..+|+.+++   ++||+|++..+++|+  +++..+++++.++|||||
T Consensus        86 ~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  162 (287)
T 1kpg_A           86 YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG  162 (287)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC
T ss_pred             cCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999988888788999999998765   789999999999999  679999999999999999


Q ss_pred             EEEEEEeeeCcccc-----cCc-h---HHHHHH-hhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          222 LYVSYEWVTTDKYE-----AEN-K---EHVDII-QGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       222 ~l~~~~~~~~~~~~-----~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ++++.++.......     ... .   ....+. ..+..+.   .+.+.+++.++++++||++++...+.
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          163 VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG---RLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC---CCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             EEEEEEecCCCccccccccccccccccchhhhHHheeCCCC---CCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            99998876543211     000 0   111111 2222222   45589999999999999999988763

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.96  E-value=2e-27  Score=216.27  Aligned_cols=211  Identities=21%  Similarity=0.326  Sum_probs=166.1

Q ss_pred             cccchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHH
Q 018194           65 TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIA  141 (359)
Q Consensus        65 ~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~  141 (359)
                      +....++.++.+||..+++|+.+++...+|+..+   +...+.+++....+.+++.+.+.++.+|||||||+|.++..++
T Consensus        30 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la  109 (318)
T 2fk8_A           30 KTRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAV  109 (318)
T ss_dssp             --------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHH
T ss_pred             ChhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHH
Confidence            3445677888999999999999999887776543   4567888888899999999999999999999999999999999


Q ss_pred             hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccccc--CCHHHHHHHHHhccCC
Q 018194          142 AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA--PKLEDVYAEVFRVLKP  219 (359)
Q Consensus       142 ~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~Lkp  219 (359)
                      +..+++|+|+|+|+.+++.++++....++.+++++..+|+.+++   ++||+|++..+++|+  +++..+++++.++|||
T Consensus       110 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp  186 (318)
T 2fk8_A          110 ERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA  186 (318)
T ss_dssp             HHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCC
Confidence            86578999999999999999999988888778999999998764   789999999999999  5889999999999999


Q ss_pred             CCEEEEEEeeeCccccc--Cc-------hHHHHHH-hhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          220 GSLYVSYEWVTTDKYEA--EN-------KEHVDII-QGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       220 gG~l~~~~~~~~~~~~~--~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ||++++.++........  ..       .....+. ..+..+.   .+.+.+++.++|+++||++++...+.
T Consensus       187 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          187 DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGG---RLPSTEMMVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTC---CCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred             CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCC---cCCCHHHHHHHHHhCCCEEEEEEecc
Confidence            99999988765432110  00       0011111 1222211   45589999999999999999887763

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.94  E-value=1.8e-25  Score=197.37  Aligned_cols=166  Identities=20%  Similarity=0.262  Sum_probs=132.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+.++..+...++.+|||||||+|.++..+++.. .+|+|+|+|+.|++.++++....+++ ++.++++|+.++++++++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~  103 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDER  103 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCC
Confidence            3556677777889999999999999999999864 59999999999999999999887765 799999999999998899


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ||+|++..+++|++|+..+|+++.++|||||++++.++.....  ............... ......++..++.++|+++
T Consensus       104 fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~a  180 (260)
T 1vl5_A          104 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN--DAFDVFYNYVEKERD-YSHHRAWKKSDWLKMLEEA  180 (260)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS--HHHHHHHHHHHHHHC-TTCCCCCBHHHHHHHHHHH
T ss_pred             EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC--HHHHHHHHHHHHhcC-ccccCCCCHHHHHHHHHHC
Confidence            9999999999999999999999999999999999987654321  000111111111111 1223457889999999999


Q ss_pred             CCeEEEEEecC
Q 018194          271 GFEVVKEKDLA  281 (359)
Q Consensus       271 GF~~i~~~~~~  281 (359)
                      ||+++......
T Consensus       181 Gf~~~~~~~~~  191 (260)
T 1vl5_A          181 GFELEELHCFH  191 (260)
T ss_dssp             TCEEEEEEEEE
T ss_pred             CCeEEEEEEee
Confidence            99998877653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.94  E-value=4.2e-26  Score=206.93  Aligned_cols=230  Identities=20%  Similarity=0.253  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHHHhhhcCCccccccchhhHH-HHhhhhhHHHHHhhcCCc-eeecCCCCCCCHHHHHHHHHHHHHHhcC-C
Q 018194           44 AEEVEDNYKEYWKFFKRPKETTKEKVPDFV-DTFYNLVTDIYEWGWGQS-FHFSPSIPGKSHRDATRLHEEMAVDLID-V  120 (359)
Q Consensus        44 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~v-~~~yd~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  120 (359)
                      +..+...+..|++...... .......+.+ ..+|+...++|..+.+.. +.|....... .........+.+++.+. +
T Consensus        38 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~~y~~~~f~~-~~~~~~~~~~~l~~~l~~~  115 (312)
T 3vc1_A           38 ATPYQEDIARYWNNEARPV-NLRLGDVDGLYHHHYGIGPVDRAALGDPEHSEYEKKVIAE-LHRLESAQAEFLMDHLGQA  115 (312)
T ss_dssp             SSHHHHHHHHHHHHCCCHH-HHHHHTTTTCCCCSCCCSCCCHHHHCCTTSTTHHHHHHHH-HHHHHHHHHHHHHTTSCCC
T ss_pred             cchhhHHHHHHHhcccccc-hhhcccccchhhhhcCCchhHHHhhcCCCccccchHHHhh-hhhHHHHHHHHHHHHhccC
Confidence            3455566666666543111 1111111122 345665555555443322 2222111101 22233334456777777 8


Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||+|||+|.++..+++..+++|+|+|+|+.+++.|+++....++.++++++++|+.++++++++||+|++..++
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            88999999999999999999986578999999999999999999999998889999999999998888999999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +|+ ++..+++++.++|||||++++.++.....+.........+...+.     +.+.+.+++.++|+++||++++.+++
T Consensus       196 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          196 MYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE-----CNIHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             GGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHT-----CCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             hhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhc-----CCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence            999 699999999999999999999988776655344334333333332     24678999999999999999999887


Q ss_pred             C
Q 018194          281 A  281 (359)
Q Consensus       281 ~  281 (359)
                      .
T Consensus       270 ~  270 (312)
T 3vc1_A          270 T  270 (312)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.94  E-value=2.4e-24  Score=191.03  Aligned_cols=162  Identities=21%  Similarity=0.294  Sum_probs=134.5

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..+. +.++.+|||||||+|.++..+++.++++|+|+|+|+.+++.++++....+++++++++++|+.++++++++
T Consensus        35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (267)
T 3kkz_A           35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE  114 (267)
T ss_dssp             HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence            33455554 67889999999999999999999866799999999999999999999999888899999999999888899


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ||+|++..+++|+ ++..+++++.++|||||++++.+.......  ........+...     .+.+.+..++.++|+++
T Consensus       115 fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~a  186 (267)
T 3kkz_A          115 LDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDE--RPAEINDFWMDA-----YPEIDTIPNQVAKIHKA  186 (267)
T ss_dssp             EEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSC--CCHHHHHHHHHH-----CTTCEEHHHHHHHHHHT
T ss_pred             EEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCC--ChHHHHHHHHHh-----CCCCCCHHHHHHHHHHC
Confidence            9999999999999 899999999999999999999876543211  112222222111     23567889999999999


Q ss_pred             CCeEEEEEecC
Q 018194          271 GFEVVKEKDLA  281 (359)
Q Consensus       271 GF~~i~~~~~~  281 (359)
                      ||++++...+.
T Consensus       187 Gf~~v~~~~~~  197 (267)
T 3kkz_A          187 GYLPVATFILP  197 (267)
T ss_dssp             TEEEEEEEECC
T ss_pred             CCEEEEEEECC
Confidence            99999988764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.93  E-value=1.3e-24  Score=192.29  Aligned_cols=164  Identities=23%  Similarity=0.312  Sum_probs=134.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++....   .+++++++|+.++++++
T Consensus        42 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~  118 (266)
T 3ujc_A           42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPE  118 (266)
T ss_dssp             HHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCC
Confidence            345667778888899999999999999999999865789999999999999999876543   57999999999998888


Q ss_pred             CccceEEeccccccc--CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          189 NHFDGAYSIEATCHA--PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ++||+|++..+++|+  +++..+++++.++|||||++++.++...... .............     ...+.+.+++.++
T Consensus       119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~  192 (266)
T 3ujc_A          119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-NWDDEFKEYVKQR-----KYTLITVEEYADI  192 (266)
T ss_dssp             TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-GCCHHHHHHHHHH-----TCCCCCHHHHHHH
T ss_pred             CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-cchHHHHHHHhcC-----CCCCCCHHHHHHH
Confidence            999999999999999  7899999999999999999999887665411 1222222222111     1245689999999


Q ss_pred             HHhCCCeEEEEEecC
Q 018194          267 AKRVGFEVVKEKDLA  281 (359)
Q Consensus       267 l~~aGF~~i~~~~~~  281 (359)
                      |+++||++++...+.
T Consensus       193 l~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          193 LTACNFKNVVSKDLS  207 (266)
T ss_dssp             HHHTTCEEEEEEECH
T ss_pred             HHHcCCeEEEEEeCC
Confidence            999999999988763

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.93  E-value=2.3e-24  Score=189.87  Aligned_cols=162  Identities=20%  Similarity=0.271  Sum_probs=133.3

Q ss_pred             HHHHHhc-CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLI-DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..+ .+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++....++.++++++++|+.++++++++
T Consensus        35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  114 (257)
T 3f4k_A           35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE  114 (257)
T ss_dssp             HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence            3344444 667889999999999999999999755699999999999999999999999888899999999999988899


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ||+|++..+++|+ ++..+++++.++|||||++++.+.......  ........+...     .+.+.+..++.++|+++
T Consensus       115 fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~a  186 (257)
T 3f4k_A          115 LDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSE--RPAEIEDFWMDA-----YPEISVIPTCIDKMERA  186 (257)
T ss_dssp             EEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSC--CCHHHHHHHHHH-----CTTCCBHHHHHHHHHHT
T ss_pred             EEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCC--ChHHHHHHHHHh-----CCCCCCHHHHHHHHHHC
Confidence            9999999999999 899999999999999999999875533211  112222222221     23467899999999999


Q ss_pred             CCeEEEEEecC
Q 018194          271 GFEVVKEKDLA  281 (359)
Q Consensus       271 GF~~i~~~~~~  281 (359)
                      ||++++...+.
T Consensus       187 Gf~~v~~~~~~  197 (257)
T 3f4k_A          187 GYTPTAHFILP  197 (257)
T ss_dssp             TEEEEEEEECC
T ss_pred             CCeEEEEEECC
Confidence            99999987764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.93  E-value=5e-24  Score=187.62  Aligned_cols=165  Identities=18%  Similarity=0.193  Sum_probs=135.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.++..+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....++.++++++++|+.++++ +
T Consensus        23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~  101 (256)
T 1nkv_A           23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N  101 (256)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C
Confidence            345566777888899999999999999999999876789999999999999999999988887789999999999887 7


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++..+++|++++..+|++++++|||||++++.+.......  ....   +...+ .......+.+..++.++|+
T Consensus       102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~  175 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP--ATEE---IAQAC-GVSSTSDFLTLPGLVGAFD  175 (256)
T ss_dssp             SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC--SSHH---HHHTT-TCSCGGGSCCHHHHHHHHH
T ss_pred             CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCC--ChHH---HHHHH-hcccccccCCHHHHHHHHH
Confidence            8999999999999999999999999999999999999875443211  1111   11111 1222335678999999999


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||++++....
T Consensus       176 ~aGf~~~~~~~~  187 (256)
T 1nkv_A          176 DLGYDVVEMVLA  187 (256)
T ss_dssp             TTTBCCCEEEEC
T ss_pred             HCCCeeEEEEeC
Confidence            999999887554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.93  E-value=3.8e-25  Score=195.50  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=119.8

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      .+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.  .+...++++.++|+.++++++++||+|++..
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  112 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPLPDESVHGVIVVH  112 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence            5678899999999999999999986 689999999999999999887  2234579999999999988889999999999


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCccccc---CchHHHHHHhhhhcC-CCCCCCCCHHHHHHHHHhCCCeE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA---ENKEHVDIIQGIERG-DALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                      +++|++++..+++++.++|||||++++. +...+. ..   ............... .......+..++.++|+++||++
T Consensus       113 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  190 (263)
T 2yqz_A          113 LWHLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEA-SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP  190 (263)
T ss_dssp             CGGGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECC-CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             chhhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCc-cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCc
Confidence            9999999999999999999999999987 333210 00   001111122111100 00112446788999999999998


Q ss_pred             EEEEec
Q 018194          275 VKEKDL  280 (359)
Q Consensus       275 i~~~~~  280 (359)
                      +.....
T Consensus       191 ~~~~~~  196 (263)
T 2yqz_A          191 RTREVA  196 (263)
T ss_dssp             EEEEEE
T ss_pred             ceEEEe
Confidence            766443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.92  E-value=2.4e-24  Score=191.92  Aligned_cols=244  Identities=18%  Similarity=0.197  Sum_probs=158.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +.+...+.....+.++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.++++....+++ ++++..+|+.++++
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~  101 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF  101 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC
Confidence            344455566667788999999999999999999985 4689999999999999999999888764 79999999999988


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcc-cccCchHHHHHHhhhhcC--CCCCCCCCHHHH
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDK-YEAENKEHVDIIQGIERG--DALPGLRSYAEI  263 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  263 (359)
                      ++++||+|++..+++|++++..+++++.++|||||++++.+...... +.+.......++......  .......+..++
T Consensus       102 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  181 (276)
T 3mgg_A          102 EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQI  181 (276)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGH
T ss_pred             CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            88999999999999999999999999999999999999987544221 112222222222111110  001123456789


Q ss_pred             HHHHHhCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHHHHhcCccccc
Q 018194          264 TEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAA-LGIAPKGTVGVHDMLFKTADYLTRGGETGIF  342 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  342 (359)
                      .++|+++||++++.+....+. .++..........+.+...+...... ......+.+++...+.+..+...+ +..-.+
T Consensus       182 ~~~l~~aGf~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~g~~~~  259 (276)
T 3mgg_A          182 YPLLQESGFEKIRVEPRMVYI-DSSKPELVDGFILKTIIPMVEGVKEQSLKMQIIKEEEWEKGIEELHKTAEH-GGTFCY  259 (276)
T ss_dssp             HHHHHHTTCEEEEEEEEEEEE-CTTCHHHHHHTTTTTHHHHHHTTHHHHHHTTSSCHHHHHHHHHHHHHTTST-TCEEEE
T ss_pred             HHHHHHCCCCeEEEeeEEEEC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCC-CeEEEE
Confidence            999999999999987653221 11111110000011111111111111 111223455566666666554333 333334


Q ss_pred             cceeeEEEecCC
Q 018194          343 TPMHMVLLRKPH  354 (359)
Q Consensus       343 ~~~~~v~arKP~  354 (359)
                      +....+.+|||.
T Consensus       260 tf~~~~~~~~~~  271 (276)
T 3mgg_A          260 TFFKGWGTKEGH  271 (276)
T ss_dssp             EEEEEEEEC---
T ss_pred             EEEEEEEecccc
Confidence            445669999996

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.92  E-value=3.5e-24  Score=191.18  Aligned_cols=224  Identities=18%  Similarity=0.195  Sum_probs=149.4

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      .+++.+...++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++.      +++.+..+|+.++++ +++||
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD  119 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-DKPLD  119 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-SSCEE
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-CCCcC
Confidence            455666777889999999999999999998 6789999999999999998874      468999999999887 57999


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc----CCCCCCCCCHHHHHHHHH
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER----GDALPGLRSYAEITEIAK  268 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  268 (359)
                      +|++..+++|++|+..+++++.++|||||++++..+.... .................    ......+.+.+++.++|+
T Consensus       120 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (279)
T 3ccf_A          120 AVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN-IKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILE  198 (279)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT-THHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred             EEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc-hHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence            9999999999999999999999999999999987544321 10000111111111100    011124568999999999


Q ss_pred             hCCCeEEEEEecCCCCCCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH----hcCccccccc
Q 018194          269 RVGFEVVKEKDLAKPPAQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLT----RGGETGIFTP  344 (359)
Q Consensus       269 ~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~  344 (359)
                      ++||+++..+.+..+...+  ..  ...+..|+........  ..+   ..++...++.++.+.+.    +++.....+.
T Consensus       199 ~aGf~~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  269 (279)
T 3ccf_A          199 KQGFDVTYAALFNRPTTLA--EG--EFGMANWIQMFASAFL--VGL---TPDQQVQLIRKVEATLQDKLYHQESWTADYR  269 (279)
T ss_dssp             HHTEEEEEEEEEECCEECS--SG--GGHHHHHHHHHCHHHH--TTC---CHHHHHHHHHHHHHHHHHHHEETTEEEECCE
T ss_pred             HcCCEEEEEEEeccccccc--CC--HHHHHHHHHHhhHHHh--ccC---CHHHHHHHHHHHHHHHHhhccCCCcEEEEEE
Confidence            9999999887664322111  00  1123334432221111  112   22233333333333332    2355666667


Q ss_pred             eeeEEEecCC
Q 018194          345 MHMVLLRKPH  354 (359)
Q Consensus       345 ~~~v~arKP~  354 (359)
                      .++++||||.
T Consensus       270 ~~~v~a~Kp~  279 (279)
T 3ccf_A          270 RIRIVSIKAQ  279 (279)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEEEEEecCC
Confidence            8889999983

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.92  E-value=7.3e-24  Score=189.67  Aligned_cols=168  Identities=12%  Similarity=0.153  Sum_probs=129.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  190 (359)
                      ..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....++.++++++++|+.+++ +++++
T Consensus        59 ~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  136 (285)
T 4htf_A           59 DRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETP  136 (285)
T ss_dssp             HHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred             HHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence            3444545543 679999999999999999987 78999999999999999999988888778999999999987 77899


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC--chHHHHHHhhhhc----CCCCCCCCCHHHHH
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE--NKEHVDIIQGIER----GDALPGLRSYAEIT  264 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~  264 (359)
                      ||+|++..+++|++++..+++++.++|||||++++.++.........  ......+......    ......+++.+++.
T Consensus       137 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  216 (285)
T 4htf_A          137 VDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVY  216 (285)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHH
T ss_pred             ceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999765442210000  0001111111111    11122467899999


Q ss_pred             HHHHhCCCeEEEEEecC
Q 018194          265 EIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~~  281 (359)
                      ++|+++||++++...+.
T Consensus       217 ~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          217 LWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHHHHTTCEEEEEEEES
T ss_pred             HHHHHCCCceeeeeeEE
Confidence            99999999999988874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.92  E-value=2.6e-24  Score=190.10  Aligned_cols=209  Identities=18%  Similarity=0.134  Sum_probs=152.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+.+.++..++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++.       +++++++|+.++++++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~   92 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD   92 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence            3556677777888899999999999999999998 5789999999999998876542       7999999999999888


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCc-hHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN-KEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ++||+|++..+++|++++..++++++++|| ||++++.++.......... ..........     ...+.+.+++. +|
T Consensus        93 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~l  165 (261)
T 3ege_A           93 KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDA-----LRFLPLDEQIN-LL  165 (261)
T ss_dssp             TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHH-----HTSCCHHHHHH-HH
T ss_pred             CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhh-----hhhCCCHHHHH-HH
Confidence            999999999999999999999999999999 9999998876532221111 1111111111     11345678888 99


Q ss_pred             HhCCCeEEEEEecCCCCCCchh--hhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Q 018194          268 KRVGFEVVKEKDLAKPPAQPWW--TRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTR  335 (359)
Q Consensus       268 ~~aGF~~i~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  335 (359)
                      +++||++++...+..+ ...|.  .+......+.|+........+.+...  ..+++...+.++.+++..
T Consensus       166 ~~aGF~~v~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~l~~  232 (261)
T 3ege_A          166 QENTKRRVEAIPFLLP-HDLSDLFAAAAWRRPELYLKAEVRAGISSFALA--NQDLVEKGLELLTADLNN  232 (261)
T ss_dssp             HHHHCSEEEEEECCEE-TTCSBCCTTTTTTCGGGGGSHHHHHTSHHHHHS--CHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCceeEEEecCC-CcCcchhhHHhccCchhhcCcchhccccceeec--CHHHHHHHHHHHHHHHhc
Confidence            9999999998877432 23332  44455556666655555444444332  456677777777777653

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.91  E-value=4.2e-23  Score=179.90  Aligned_cols=163  Identities=17%  Similarity=0.240  Sum_probs=133.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ...++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+++ ++++.++|+.++++++++
T Consensus        10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~   87 (239)
T 1xxl_A           10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDS   87 (239)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTC
T ss_pred             cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCc
Confidence            355677788889999999999999999999986 469999999999999999998887764 799999999999988899


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH---hhhhcCCCCCCCCCHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII---QGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ||+|++..+++|++++..+++++.++|||||++++.+......     .....+.   ...... .....++..++.++|
T Consensus        88 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll  161 (239)
T 1xxl_A           88 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED-----PVLDEFVNHLNRLRDP-SHVRESSLSEWQAMF  161 (239)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS-----HHHHHHHHHHHHHHCT-TCCCCCBHHHHHHHH
T ss_pred             EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC-----hhHHHHHHHHHHhccc-cccCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999987654321     1121111   111112 223456899999999


Q ss_pred             HhCCCeEEEEEecC
Q 018194          268 KRVGFEVVKEKDLA  281 (359)
Q Consensus       268 ~~aGF~~i~~~~~~  281 (359)
                      +++||+++......
T Consensus       162 ~~aGf~~~~~~~~~  175 (239)
T 1xxl_A          162 SANQLAYQDIQKWN  175 (239)
T ss_dssp             HHTTEEEEEEEEEE
T ss_pred             HHCCCcEEEEEeec
Confidence            99999998877653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.91  E-value=4.3e-23  Score=181.65  Aligned_cols=155  Identities=14%  Similarity=0.241  Sum_probs=119.9

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      ++++.+|||||||+|..+..+++.   ++++|+|+|+|+.|++.|++++...+...+++++++|+.++++  +.||+|++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~  145 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL  145 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--ccccccee
Confidence            568899999999999999999874   5689999999999999999999988888899999999999875  46999999


Q ss_pred             cccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---------------CCCCCC
Q 018194          197 IEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---------------LPGLRS  259 (359)
Q Consensus       197 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  259 (359)
                      ..+++|+++  ...+|++++++|||||++++.+......... ......+...+....+               .....+
T Consensus       146 ~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~-~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s  224 (261)
T 4gek_A          146 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKV-GELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS  224 (261)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHH-HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred             eeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence            999999974  5679999999999999999988655322110 0011111111100000               112457


Q ss_pred             HHHHHHHHHhCCCeEEEE
Q 018194          260 YAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i~~  277 (359)
                      .+++.++|+++||+.+++
T Consensus       225 ~~~~~~~L~~AGF~~ve~  242 (261)
T 4gek_A          225 VETHKARLHKAGFEHSEL  242 (261)
T ss_dssp             HHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHcCCCeEEE
Confidence            889999999999998875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=5.6e-23  Score=181.16  Aligned_cols=156  Identities=11%  Similarity=0.064  Sum_probs=120.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.++++      ..++++.++|+.+++ ++++
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~-~~~~   95 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK-PAQK   95 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC-CSSC
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC-ccCC
Confidence            45667777788899999999999999999885 578999999999999999887      246899999999988 7789


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHh-----hhhcC--CCCCCCCCHHHH
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ-----GIERG--DALPGLRSYAEI  263 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~  263 (359)
                      ||+|++..+++|++++..+++++.++|||||++++..+.....  ...........     ....+  .....+.+.+++
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE--PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY  173 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS--HHHHHHHHHHHHSTTGGGC-------CCCCCHHHH
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc--HHHHHHHHHhcCcchHHHhccccccccCCCCHHHH
Confidence            9999999999999999999999999999999999976533210  00011111111     01111  112356789999


Q ss_pred             HHHHHhCCCeEEE
Q 018194          264 TEIAKRVGFEVVK  276 (359)
Q Consensus       264 ~~~l~~aGF~~i~  276 (359)
                      .++|+++||++..
T Consensus       174 ~~~l~~aGf~v~~  186 (259)
T 2p35_A          174 FNALSPKSSRVDV  186 (259)
T ss_dssp             HHHHGGGEEEEEE
T ss_pred             HHHHHhcCCceEE
Confidence            9999999997543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.90  E-value=8.9e-22  Score=175.07  Aligned_cols=180  Identities=18%  Similarity=0.178  Sum_probs=139.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHH------HHHHHHHHHHHcCCCCC
Q 018194          102 SHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEY------QVNRARLHNKKAGLDSL  173 (359)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~------~~~~a~~~~~~~~~~~~  173 (359)
                      .+..++......++..+.+.++.+|||||||+|.++..+++..  ..+|+|+|+|+.      +++.++++....++.++
T Consensus        23 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~  102 (275)
T 3bkx_A           23 TIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR  102 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCc
Confidence            3556677777888888888999999999999999999999863  379999999997      99999999988777678


Q ss_pred             eEEEEcC---CCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH-HHHHh---
Q 018194          174 CEVVCGN---FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH-VDIIQ---  246 (359)
Q Consensus       174 i~~~~~d---~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~---  246 (359)
                      +++..+|   ...+++++++||+|++..+++|++++..+++.+.++++|||++++.++............. ..+..   
T Consensus       103 v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (275)
T 3bkx_A          103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLL  182 (275)
T ss_dssp             EEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHH
T ss_pred             eEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHH
Confidence            9999998   4455667889999999999999999988888888888889999998877643322111111 11111   


Q ss_pred             -hhhc--CCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          247 -GIER--GDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       247 -~~~~--~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                       ....  ......+.+.+++.++|+++||++++...+.
T Consensus       183 ~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~  220 (275)
T 3bkx_A          183 YAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVE  220 (275)
T ss_dssp             HHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred             hhccccccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence             1111  1222346799999999999999999987773

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.90  E-value=4.8e-23  Score=176.65  Aligned_cols=169  Identities=16%  Similarity=0.169  Sum_probs=132.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+...++ +|||+|||+|.++..+++.++.+|+|+|+|+.+++.++++....++.++++++++|+.+++++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            3445666777777777 999999999999999998767899999999999999999999988878999999999999988


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC-----CCCCCCCHHH
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD-----ALPGLRSYAE  262 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  262 (359)
                      +++||+|++..+++|++++..+++++.++|||||++++.+.........   .............     .....++.++
T Consensus       109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRD---SISAEMIRKNPDWKEFNRKNISQENVER  185 (219)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHH---HHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred             cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHH---HHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence            8999999999999999999999999999999999999976443321110   0000000000000     0012346789


Q ss_pred             HHHHHHhCCCeEEEEEec
Q 018194          263 ITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~  280 (359)
                      +.++|+++||++++....
T Consensus       186 ~~~~l~~aGf~~v~~~~~  203 (219)
T 3dlc_A          186 FQNVLDEIGISSYEIILG  203 (219)
T ss_dssp             HHHHHHHHTCSSEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEec
Confidence            999999999999887654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.90  E-value=2.1e-22  Score=172.95  Aligned_cols=154  Identities=24%  Similarity=0.285  Sum_probs=132.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.++..+.+.++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.++++....+++ ++++..+|+.+++++++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCC
Confidence            44666677888999999999999999999985  3579999999999999999999888775 79999999999888889


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      +||+|++..+++|++++..+++++.++|||||++++.++.......               +......++.+++.++|++
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK---------------GPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS---------------SCCGGGSCCHHHHHHHHHH
T ss_pred             CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc---------------CCchhcccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876543211               1112245688999999999


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||++++...+.
T Consensus       171 ~Gf~~~~~~~~~  182 (219)
T 3dh0_A          171 AGIRVGRVVEVG  182 (219)
T ss_dssp             TTCEEEEEEEET
T ss_pred             CCCEEEEEEeeC
Confidence            999999987764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.89  E-value=2.6e-22  Score=175.53  Aligned_cols=152  Identities=12%  Similarity=0.083  Sum_probs=118.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++...     +++++++|+.++ +++++||+|++.+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence            46779999999999999999986 46999999999999999987532     699999999887 467899999999999


Q ss_pred             cccCCHHHHHHHHH-hccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc----------CCCCCCCCCHHHHHHHHHh
Q 018194          201 CHAPKLEDVYAEVF-RVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER----------GDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       201 ~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~  269 (359)
                      +|++++..+|+++. ++|||||++++.+......     ............          .......++.+++.++|++
T Consensus       114 ~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (250)
T 2p7i_A          114 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  188 (250)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence            99999999999999 9999999999976443211     000000000000          0112246789999999999


Q ss_pred             CCCeEEEEEecCCCC
Q 018194          270 VGFEVVKEKDLAKPP  284 (359)
Q Consensus       270 aGF~~i~~~~~~~~~  284 (359)
                      +||++++...+...+
T Consensus       189 ~Gf~~~~~~~~~~~p  203 (250)
T 2p7i_A          189 AGLQVTYRSGIFFKA  203 (250)
T ss_dssp             TTCEEEEEEEEEECC
T ss_pred             CCCeEEEEeeeEecC
Confidence            999999988765444

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.89  E-value=2.7e-22  Score=174.15  Aligned_cols=164  Identities=16%  Similarity=0.199  Sum_probs=124.7

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.+...+. ..++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++....+   +++++++|+.+++++ +
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~  108 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-E  108 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-S
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-C
Confidence            44555554 567889999999999999999985 47899999999999999999876543   799999999998876 8


Q ss_pred             ccceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh--------------hcCCC
Q 018194          190 HFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI--------------ERGDA  253 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~  253 (359)
                      +||+|++..+++|+++..  .++++++++|||||++++.++......... ......+...              .....
T Consensus       109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (234)
T 3dtn_A          109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIE-NLNKTIWRQYVENSGLTEEEIAAGYERSK  187 (234)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH-HHHHHHHHHHHHTSSCCHHHHHTTC----
T ss_pred             CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhh-hHHHHHHHHHHHhcCCCHHHHHHHHHhcc
Confidence            999999999999998665  699999999999999999886654321111 0111111111              11112


Q ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          254 LPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       254 ~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ....++.+++.++|+++||++++....
T Consensus       188 ~~~~~~~~~~~~ll~~aGF~~v~~~~~  214 (234)
T 3dtn_A          188 LDKDIEMNQQLNWLKEAGFRDVSCIYK  214 (234)
T ss_dssp             CCCCCBHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cccccCHHHHHHHHHHcCCCceeeeee
Confidence            334668899999999999999987554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.89  E-value=4.3e-23  Score=175.21  Aligned_cols=180  Identities=17%  Similarity=0.109  Sum_probs=136.1

Q ss_pred             hHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEE
Q 018194           71 DFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG  150 (359)
Q Consensus        71 ~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  150 (359)
                      +.+.++|+..+..|+..+.......+     ..    ......+...    .+.+|||+|||+|.++..+++. +.+|+|
T Consensus         3 ~~~~~~y~~~a~~y~~~~~~~~~~~~-----~~----~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~-~~~v~g   68 (203)
T 3h2b_A            3 DDVSKAYSSPTFDAEALLGTVISAED-----PD----RVLIEPWATG----VDGVILDVGSGTGRWTGHLASL-GHQIEG   68 (203)
T ss_dssp             CHHHHHHHCTTTCHHHHTCSSCCTTC-----TT----HHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHT-TCCEEE
T ss_pred             HHHHHHHhhHHHHHHHHhhhhccccH-----HH----HHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhc-CCeEEE
Confidence            45778888888888765543222111     11    1111222221    2779999999999999999986 679999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +|+|+.+++.++++.      .+++++++|+.++++++++||+|++..+++|++  ++..+++++.++|||||++++..+
T Consensus        69 vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A           69 LEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             ECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999999999999873      368999999999888889999999999999997  899999999999999999999775


Q ss_pred             eeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                      ......            .+.........++.+++.++|+++||++++......
T Consensus       143 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  184 (203)
T 3h2b_A          143 SGPSLE------------PMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR  184 (203)
T ss_dssp             CCSSCE------------EECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred             cCCchh------------hhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence            543210            011111122356889999999999999999988754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.89  E-value=6.2e-22  Score=172.63  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=125.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+...+  .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.    ...+++++++|+.++++++++|
T Consensus        45 ~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~f  117 (242)
T 3l8d_A           45 PFFEQYV--KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQF  117 (242)
T ss_dssp             HHHHHHS--CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCE
T ss_pred             HHHHHHc--CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCc
Confidence            4444444  36789999999999999999986 779999999999999998774    2357999999999999888999


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+|++..+++|++++..+++++.++|||||++++.++........      ................++.++.++|+++|
T Consensus       118 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  191 (242)
T 3l8d_A          118 EAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRE------NSYPRLYGKDVVCNTMMPWEFEQLVKEQG  191 (242)
T ss_dssp             EEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG------GGGGGGGTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             cEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh------hhhhhhccccccccCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999987544321111      01111122222335678999999999999


Q ss_pred             CeEEEEEecC
Q 018194          272 FEVVKEKDLA  281 (359)
Q Consensus       272 F~~i~~~~~~  281 (359)
                      |++++...+.
T Consensus       192 f~~~~~~~~~  201 (242)
T 3l8d_A          192 FKVVDGIGVY  201 (242)
T ss_dssp             EEEEEEEEEE
T ss_pred             CEEEEeeccc
Confidence            9999987663

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.2e-21  Score=176.45  Aligned_cols=165  Identities=12%  Similarity=0.183  Sum_probs=122.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~  188 (359)
                      +.+..... .++.+|||||||+|.++..+++  .++.+|+|+|+|+.+++.|+++.... +...+++++++|+.++++++
T Consensus        27 ~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  105 (299)
T 3g5t_A           27 KMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG  105 (299)
T ss_dssp             HHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC
T ss_pred             HHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc
Confidence            34444433 5788999999999999999996  35789999999999999999998876 44578999999999988777


Q ss_pred             ------CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcc--cccCchHHHHHHhhhhcCCCCCCC--C
Q 018194          189 ------NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDK--YEAENKEHVDIIQGIERGDALPGL--R  258 (359)
Q Consensus       189 ------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~  258 (359)
                            ++||+|++..+++|+ ++..+++++.++|||||.+++.++.....  ..........+...  .....+..  .
T Consensus       106 ~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~w~~p  182 (299)
T 3g5t_A          106 ADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYG--KQGLGPYWEQP  182 (299)
T ss_dssp             TTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHC--TTTTGGGSCTT
T ss_pred             cccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccC--cccccchhhch
Confidence                  899999999999999 99999999999999999999866543211  11111222222111  00111111  3


Q ss_pred             CHHHHHHHHHhCCC-----eEEEEEec
Q 018194          259 SYAEITEIAKRVGF-----EVVKEKDL  280 (359)
Q Consensus       259 ~~~~~~~~l~~aGF-----~~i~~~~~  280 (359)
                      ..+.+.+.++++||     +.++...+
T Consensus       183 ~~~~~~~~l~~~gfp~~~f~~v~~~~~  209 (299)
T 3g5t_A          183 GRSRLRNMLKDSHLDPELFHDIQVSYF  209 (299)
T ss_dssp             HHHHHHTTTTTCCCCTTTEEEEEEEEE
T ss_pred             hhHHHHHhhhccCCChHHcCcceEEEe
Confidence            45677899999999     67766665

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.88  E-value=2.9e-22  Score=186.57  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=124.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEcCCCCC------
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA-----G-L-DSLCEVVCGNFLKM------  184 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~-----~-~-~~~i~~~~~d~~~~------  184 (359)
                      ..++.+|||||||+|.++..+++.  ++.+|+|+|+|+.+++.++++....     | . ..+++++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            557889999999999999999985  5679999999999999999987654     2 2 25899999999987      


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                      ++++++||+|+++.+++|++++..+|++++++|||||++++.++.............     ....+.......+.+++.
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  235 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQD-----PILYGECLGGALYLEDFR  235 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHC-----HHHHHTTCTTCCBHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhh-----HHHhhcccccCCCHHHHH
Confidence            888899999999999999999999999999999999999998876643322111111     111122233566889999


Q ss_pred             HHHHhCCCeEEEEEe
Q 018194          265 EIAKRVGFEVVKEKD  279 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~  279 (359)
                      ++|+++||++++...
T Consensus       236 ~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          236 RLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHTTCCCEEEEE
T ss_pred             HHHHHCCCceEEEEe
Confidence            999999999876554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.88  E-value=1.5e-21  Score=174.55  Aligned_cols=217  Identities=12%  Similarity=0.049  Sum_probs=148.2

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      ..+.++.+|||||||+|.++..+++. + +++|+|+|+|+.+++.++++....+  .++++.++|+.+++++ ++||+|+
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~v~   94 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELN-DKYDIAI   94 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCS-SCEEEEE
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCcC-CCeeEEE
Confidence            36678899999999999999999985 4 4799999999999999999987654  3799999999998874 6999999


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEEee-----eCcccccCc-------hHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV-----TTDKYEAEN-------KEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      +..+++|++++..++++++++|||||++++.+..     .........       ..+...........+ ..+.+..++
T Consensus        95 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l  173 (284)
T 3gu3_A           95 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG-KDGNIGMKI  173 (284)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC-CCTTGGGTH
T ss_pred             ECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc-ccccHHHHH
Confidence            9999999999999999999999999999998765     111111110       111111111111111 134456789


Q ss_pred             HHHHHhCCCeEEEEEecCC---CCCCchhhhh-----hccchhHHH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Q 018194          264 TEIAKRVGFEVVKEKDLAK---PPAQPWWTRL-----KMGRFAYWR-NHILVTILAALGIAPKGTVGVHDMLFKTADYLT  334 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~~~---~~~~~w~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  334 (359)
                      .++|+++||+.++......   .+...|..+.     .....+.|. ...+....+.+--...+.+++..++.+.++.+.
T Consensus       174 ~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~G~~~~~~~~~~~~~~l~~~g~~~~e~~~~~~~~~~~~~  253 (284)
T 3gu3_A          174 PIYLSELGVKNIECRVSDKVNFLDSNMHHNDKNDLYQSLKEEGIAGDPGDKQQFVERLIARGLTYDNALAQYEAELRFFK  253 (284)
T ss_dssp             HHHHHHTTCEEEEEEECCCCEEECTTCCSHHHHHHHHHHHHTTTTCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEcCCccccCCCCChHHHHHHHHHHHhccccCCcccHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence            9999999999998754322   1234554433     122222111 011122222222223467888999999998887


Q ss_pred             hcCc
Q 018194          335 RGGE  338 (359)
Q Consensus       335 ~~~~  338 (359)
                      +.+.
T Consensus       254 ~~~~  257 (284)
T 3gu3_A          254 ALHL  257 (284)
T ss_dssp             HCCT
T ss_pred             Hhcc
Confidence            5543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.88  E-value=5.6e-22  Score=172.98  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=119.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....+ ..++.++.+|+.++++++++||+|++..++
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            3678999999999999999988655699999999999999999887654 246899999999888877899999999999


Q ss_pred             cccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          201 CHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       201 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      +|+++  ...+++++.++|||||++++.+......             ............+.+++.++|+++||++++..
T Consensus       157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-------------VILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-------------EEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc-------------ceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            99987  4499999999999999999987655420             00000111123478999999999999999988


Q ss_pred             ecC
Q 018194          279 DLA  281 (359)
Q Consensus       279 ~~~  281 (359)
                      ...
T Consensus       224 ~~~  226 (241)
T 2ex4_A          224 RQE  226 (241)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.88  E-value=2.9e-22  Score=172.19  Aligned_cols=155  Identities=17%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      +++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++..     .+++++++|+.+++++ ++||+
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~  109 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDT  109 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSE
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEE
Confidence            334444457889999999999999999986 6899999999999999998754     4689999999998877 89999


Q ss_pred             EEecccccccCCHHH--HHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC--------CCCCCCCHHHH
Q 018194          194 AYSIEATCHAPKLED--VYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD--------ALPGLRSYAEI  263 (359)
Q Consensus       194 v~~~~~l~~~~~~~~--~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  263 (359)
                      |++..+++|+++...  +++++.++|||||.+++.+.......     .............        ....+.+.+++
T Consensus       110 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (220)
T 3hnr_A          110 IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD-----AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM  184 (220)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH-----HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHH
T ss_pred             EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH-----HHHHHHHHHHhCCCccchhhcchhhcCCHHHH
Confidence            999999999998876  99999999999999999874432211     1111111110000        01134588999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|+++||+++.....
T Consensus       185 ~~~l~~aGf~v~~~~~~  201 (220)
T 3hnr_A          185 QTIFENNGFHVTFTRLN  201 (220)
T ss_dssp             HHHHHHTTEEEEEEECS
T ss_pred             HHHHHHCCCEEEEeecc
Confidence            99999999998876543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.88  E-value=8.3e-22  Score=168.94  Aligned_cols=158  Identities=16%  Similarity=0.226  Sum_probs=117.9

Q ss_pred             HHHHhc-CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          113 MAVDLI-DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       113 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      .+...+ ...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++    .+. .+++++++|+.++ +++++|
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~  108 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQW  108 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCE
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCce
Confidence            344444 3667889999999999999999987 6799999999999999987    333 4799999999987 678899


Q ss_pred             ceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHH-HHh---h-hhcCCC---CCCCCCHH
Q 018194          192 DGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVD-IIQ---G-IERGDA---LPGLRSYA  261 (359)
Q Consensus       192 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~---~~~~~~~~  261 (359)
                      |+|++..+++|+++.  ..+++++.++|||||.+++.++.........  .... ...   . +..+..   ...+.+.+
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ--QDDSEPEVAVRRTLQDGRSFRIVKVFRSPA  186 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHH
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccch--hhhcccccceeeecCCcchhhHhhcCCCHH
Confidence            999999999999975  8999999999999999999876653211100  0000 000   0 000000   12356899


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 018194          262 EITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~~~~  279 (359)
                      ++.++|+++||++...+.
T Consensus       187 ~~~~~l~~aGf~v~~~~~  204 (218)
T 3ou2_A          187 ELTERLTALGWSCSVDEV  204 (218)
T ss_dssp             HHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHCCCEEEeeec
Confidence            999999999999665544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.88  E-value=1.2e-21  Score=176.94  Aligned_cols=161  Identities=17%  Similarity=0.197  Sum_probs=128.1

Q ss_pred             CCCCCCEEEEECCCCChHHHHHH--hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIA--AHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      .+.++.+|||||||+|..+..++  ..++.+|+|+|+|+.+++.++++....++.++++++++|+.+++++ ++||+|++
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence            45678999999999999999985  3567899999999999999999998888877899999999998887 89999999


Q ss_pred             cccccccCCHHH---HHHHHHhccCCCCEEEEEEeeeCcccccC--------ch---HHHHHHhhhhcCCCCCCCCCHHH
Q 018194          197 IEATCHAPKLED---VYAEVFRVLKPGSLYVSYEWVTTDKYEAE--------NK---EHVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       197 ~~~l~~~~~~~~---~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                      ..+++|++++..   +++++.++|||||++++.++.........        ..   .................+++.++
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ  273 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence            999999988775   79999999999999999876553221111        11   11111111111233446689999


Q ss_pred             HHHHHHhCCCeEEEEEec
Q 018194          263 ITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~  280 (359)
                      +.++|+++||++++....
T Consensus       274 ~~~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          274 TRAQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHCCCEEEEEEcc
Confidence            999999999999998764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.88  E-value=1.3e-21  Score=171.79  Aligned_cols=162  Identities=14%  Similarity=0.092  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      .........++..+...++.+|||||||+|.++..+++....+|+++|+|+.+++.++++....   .+++++++|+.++
T Consensus        76 ~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~  152 (254)
T 1xtp_A           76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA  152 (254)
T ss_dssp             HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC
T ss_pred             HHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC
Confidence            3344445666777777788999999999999999998864568999999999999999887543   4799999999998


Q ss_pred             CCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194          185 PFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                      ++++++||+|++..+++|++  ++..+++++.++|||||++++.++.......            ..........++.++
T Consensus       153 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------------~~~~~~~~~~~~~~~  220 (254)
T 1xtp_A          153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF------------LVDKEDSSLTRSDIH  220 (254)
T ss_dssp             CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE------------EEETTTTEEEBCHHH
T ss_pred             CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc------------eecccCCcccCCHHH
Confidence            88888999999999999995  5889999999999999999998753321100            000111112458899


Q ss_pred             HHHHHHhCCCeEEEEEecC
Q 018194          263 ITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~~  281 (359)
                      +.++|+++||++++.....
T Consensus       221 ~~~~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          221 YKRLFNESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHHHHHHTCCEEEEEECT
T ss_pred             HHHHHHHCCCEEEEeeecC
Confidence            9999999999999987763

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.87  E-value=1.8e-21  Score=169.70  Aligned_cols=144  Identities=20%  Similarity=0.225  Sum_probs=116.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEec
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSI  197 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~  197 (359)
                      +.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++         ++++.+|+.+.  ++++++||+|++.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence            457789999999999999999886 67999999999999998764         68899998875  7788999999999


Q ss_pred             ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEE
Q 018194          198 EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       198 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      .+++|++  +...+++++.++|||||++++..+....        ...+...+.. .......+.+++.++|+++||+++
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aGf~~~  179 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS--------LYSLINFYID-PTHKKPVHPETLKFILEYLGFRDV  179 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS--------HHHHHHHTTS-TTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred             CchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch--------hHHHHHHhcC-ccccccCCHHHHHHHHHHCCCeEE
Confidence            9999998  5599999999999999999987544221        1111122211 222346688999999999999999


Q ss_pred             EEEecCC
Q 018194          276 KEKDLAK  282 (359)
Q Consensus       276 ~~~~~~~  282 (359)
                      +...+..
T Consensus       180 ~~~~~~~  186 (240)
T 3dli_A          180 KIEFFEE  186 (240)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9888753

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.87  E-value=2e-22  Score=176.71  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=94.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.+.+....+  .+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++       ++++++++|+++++++++
T Consensus        29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~   98 (257)
T 4hg2_A           29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPA   98 (257)
T ss_dssp             HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSS
T ss_pred             HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCC
Confidence            3445555543  3569999999999999999986 57999999999999887542       479999999999999999


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +||+|++..++||+ ++..+++++.|+|||||+|++..+..
T Consensus        99 sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           99 SVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             CEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            99999999999876 68899999999999999999877554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.87  E-value=9.9e-22  Score=166.84  Aligned_cols=151  Identities=18%  Similarity=0.193  Sum_probs=116.8

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCCeEEEEcCCCCC
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG-----------LDSLCEVVCGNFLKM  184 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~  184 (359)
                      ..+.+.++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++.....           ...+++++++|+.++
T Consensus        16 ~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             HhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            4456678899999999999999999986 7899999999999999998764210           124799999999998


Q ss_pred             CCCC-CccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194          185 PFED-NHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA  261 (359)
Q Consensus       185 ~~~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (359)
                      ++++ ++||+|++..+++|++  +...++++++++|||||++++........                ...+.+...+.+
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----------------~~~~~~~~~~~~  158 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----------------LLEGPPFSVPQT  158 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----------------SSSSCCCCCCHH
T ss_pred             CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----------------ccCCCCCCCCHH
Confidence            8765 7999999999999986  35679999999999999955543222110                011122345789


Q ss_pred             HHHHHHHhCCCeEEEEEecCCCC
Q 018194          262 EITEIAKRVGFEVVKEKDLAKPP  284 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~~~~~~~~~  284 (359)
                      ++.+++++ ||+++..+......
T Consensus       159 el~~~~~~-gf~i~~~~~~~~~~  180 (203)
T 1pjz_A          159 WLHRVMSG-NWEVTKVGGQDTLH  180 (203)
T ss_dssp             HHHHTSCS-SEEEEEEEESSCTT
T ss_pred             HHHHHhcC-CcEEEEeccccchh
Confidence            99999998 99998887765433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.87  E-value=1.7e-21  Score=171.77  Aligned_cols=157  Identities=14%  Similarity=0.040  Sum_probs=126.2

Q ss_pred             ccccchhhHHHHhhhhhHHHHHhhcCCceeecCC-----CCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHH-
Q 018194           64 TTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPS-----IPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPM-  137 (359)
Q Consensus        64 ~~~~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~-  137 (359)
                      .+.+...+.+.++|+...++|+..|+.+++.+..     ........ .....+.-..++.+.++.+|||||||+|.++ 
T Consensus        60 ~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~-~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta  138 (298)
T 3fpf_A           60 AEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPR-YLELLKNEAALGRFRRGERAVFIGGGPLPLTG  138 (298)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHH-HHHHHHHHHHHTTCCTTCEEEEECCCSSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCCCccc-HHHHHHHHHHHcCCCCcCEEEEECCCccHHHH
Confidence            4566788899999999999999999988854432     01111122 2233333335678899999999999998766 


Q ss_pred             HHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhcc
Q 018194          138 RAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL  217 (359)
Q Consensus       138 ~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L  217 (359)
                      ..+++.++++|+|+|+|+.|++.|+++++..++ ++++++++|+.+++  +++||+|++...   .+++..+++++.++|
T Consensus       139 ~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~L  212 (298)
T 3fpf_A          139 ILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYV  212 (298)
T ss_dssp             HHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHC
T ss_pred             HHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHc
Confidence            455666789999999999999999999999888 79999999998865  689999998654   579999999999999


Q ss_pred             CCCCEEEEEE
Q 018194          218 KPGSLYVSYE  227 (359)
Q Consensus       218 kpgG~l~~~~  227 (359)
                      ||||++++.+
T Consensus       213 kPGG~Lvv~~  222 (298)
T 3fpf_A          213 DTETRIIYRT  222 (298)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCcEEEEEc
Confidence            9999999864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.86  E-value=4e-21  Score=164.08  Aligned_cols=171  Identities=19%  Similarity=0.195  Sum_probs=132.0

Q ss_pred             hhHHHHhhhhhHHHHHhhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEE
Q 018194           70 PDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVV  149 (359)
Q Consensus        70 ~~~v~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~  149 (359)
                      .+...++|+.....|+.....                 ......++.  .+.++.+|||+|||+|.++..+++. +.+|+
T Consensus        10 ~~~~~~~~~~~~~~y~~~~~~-----------------~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~   69 (211)
T 3e23_A           10 DDDTLRFYRGNATAYAERQPR-----------------SATLTKFLG--ELPAGAKILELGCGAGYQAEAMLAA-GFDVD   69 (211)
T ss_dssp             CHHHHHHHHHSHHHHTTCCCC-----------------CHHHHHHHT--TSCTTCEEEESSCTTSHHHHHHHHT-TCEEE
T ss_pred             cHHHHHHHHHHHHHHhhccch-----------------hHHHHHHHH--hcCCCCcEEEECCCCCHHHHHHHHc-CCeEE
Confidence            456677888888777754322                 111222333  2456889999999999999999986 67999


Q ss_pred             EEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEE
Q 018194          150 GITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       150 g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|+|+.+++.++++.       ++.+..+|+.+++ ++++||+|++..+++|++  ++..+++++.++|||||++++..
T Consensus        70 ~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A           70 ATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             EEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999999999999886       3678899999888 678999999999999998  78899999999999999999875


Q ss_pred             eeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC-CeEEEEEecC
Q 018194          228 WVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG-FEVVKEKDLA  281 (359)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~i~~~~~~  281 (359)
                      ..........             ......+++.+++.++|+++| |++++.....
T Consensus       142 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~  183 (211)
T 3e23_A          142 KSGEGEGRDK-------------LARYYNYPSEEWLRARYAEAGTWASVAVESSE  183 (211)
T ss_dssp             ECCSSCEECT-------------TSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred             cCCCcccccc-------------cchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence            4332211100             011124568999999999999 9999887653

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.86  E-value=4.6e-21  Score=166.15  Aligned_cols=159  Identities=25%  Similarity=0.298  Sum_probs=123.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----DSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      +++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++    ..++.+..+|+..+++++++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            47889999999999999999987 77999999999999999998877665    23689999999999888899999999


Q ss_pred             cccccccCCHH---HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCC-------------CCCCCCCH
Q 018194          197 IEATCHAPKLE---DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGD-------------ALPGLRSY  260 (359)
Q Consensus       197 ~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~  260 (359)
                      ..+++|++++.   .+++++.++|||||++++.++........................             .....++.
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE  187 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence            99999999887   999999999999999999876553221111111111110000000             01135689


Q ss_pred             HHHHHHHHhCCCeEEEEEec
Q 018194          261 AEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +++.++|+++||++++....
T Consensus       188 ~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          188 KELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             HHHHHHHHTTTEEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEec
Confidence            99999999999999987754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.86  E-value=3.5e-21  Score=169.10  Aligned_cols=166  Identities=14%  Similarity=0.157  Sum_probs=124.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+...+...++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++..    ..+++++++|+.++++++++|
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f  109 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY  109 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence            4566677777889999999999999999998643499999999999999998865    357999999999998888999


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCccccc--------CchHHHHHHhhhhcC----------CC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA--------ENKEHVDIIQGIERG----------DA  253 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~----------~~  253 (359)
                      |+|++..+++|++++..+++++.++|||||++++...........        ...........+...          ..
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV  189 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence            999999999999999999999999999999999864322100000        000000000000000          00


Q ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          254 LPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       254 ~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ....++.+++.++|+++||++++..+..
T Consensus       190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~~  217 (253)
T 3g5l_A          190 QKYHRTVTTYIQTLLKNGFQINSVIEPE  217 (253)
T ss_dssp             EEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred             ccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence            0012388999999999999999987753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.85  E-value=8.5e-21  Score=164.82  Aligned_cols=147  Identities=20%  Similarity=0.266  Sum_probs=121.6

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      .....++ .+|||||||+|.++..+++ .+.+|+|+|+|+.+++.++++....+...+++++++|+.+++ ++++||+|+
T Consensus        61 ~~~~~~~-~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~  137 (235)
T 3lcc_A           61 DTSSLPL-GRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIF  137 (235)
T ss_dssp             HTTCSCC-EEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEE
T ss_pred             HhcCCCC-CCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEE
Confidence            3334444 5999999999999999987 467999999999999999999876555567999999999876 456999999


Q ss_pred             ecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          196 SIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       196 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      +..+++|++  +...+++++.++|||||++++.++.....                 ..+.+...+.+++.++|+++||+
T Consensus       138 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~Gf~  200 (235)
T 3lcc_A          138 DYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-----------------VGGPPYKVDVSTFEEVLVPIGFK  200 (235)
T ss_dssp             EESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-----------------CSCSSCCCCHHHHHHHHGGGTEE
T ss_pred             EChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-----------------CCCCCccCCHHHHHHHHHHcCCe
Confidence            999999998  89999999999999999999876544311                 11122346889999999999999


Q ss_pred             EEEEEecCC
Q 018194          274 VVKEKDLAK  282 (359)
Q Consensus       274 ~i~~~~~~~  282 (359)
                      +++.+....
T Consensus       201 ~~~~~~~~~  209 (235)
T 3lcc_A          201 AVSVEENPH  209 (235)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCC
Confidence            999888753

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.85  E-value=1.7e-20  Score=168.58  Aligned_cols=161  Identities=19%  Similarity=0.258  Sum_probs=121.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~  198 (359)
                      +.++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....++..+++++++|+.+.++ ++++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            4678899999999999999988865459999999999999999999887776789999999999887 578999999999


Q ss_pred             cccc----cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccc--------c-----------CchHHH-HHHh-hhhcC--
Q 018194          199 ATCH----APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE--------A-----------ENKEHV-DIIQ-GIERG--  251 (359)
Q Consensus       199 ~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~-----------~~~~~~-~~~~-~~~~~--  251 (359)
                      +++|    .+++..+++++.++|||||++++..+.......        .           ..+... .... .....  
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  221 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN  221 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence            9977    457889999999999999999987643211000        0           000000 0000 00000  


Q ss_pred             CCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          252 DALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      .....+.+.+++.++|+++||++++...+
T Consensus       222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          222 NCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             CCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence            00013568899999999999999998776

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.85  E-value=1.4e-20  Score=161.50  Aligned_cols=161  Identities=15%  Similarity=0.207  Sum_probs=118.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDS----LCEVVCGNFLKMP  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~  185 (359)
                      .+.+.+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...+++.    +++++++|+...+
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            344555555567889999999999999999985 33799999999999999999987776654    7999999998777


Q ss_pred             CCCCccceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          186 FEDNHFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      .+.++||+|++..+++|+++.  ..+++++.++|||||.+++......   ..   ..................++.+++
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~l  171 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY---NV---KFANLPAGKLRHKDHRFEWTRSQF  171 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH---HH---HTC-----------CCSCBCHHHH
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc---ch---hhcccccccccccccccccCHHHH
Confidence            777899999999999999855  8999999999999997776432110   00   000000000001111234578888


Q ss_pred             H----HHHHhCCCeEEEE
Q 018194          264 T----EIAKRVGFEVVKE  277 (359)
Q Consensus       264 ~----~~l~~aGF~~i~~  277 (359)
                      .    ++++++||+++..
T Consensus       172 ~~~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          172 QNWANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHHHcCceEEEE
Confidence            8    8999999988653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.85  E-value=2.3e-20  Score=162.82  Aligned_cols=102  Identities=19%  Similarity=0.295  Sum_probs=92.5

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc-cc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE-AT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~l  200 (359)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.  +++++++|+.+++++ ++||+|++.. ++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l  112 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence            6789999999999999999986 67999999999999999999887654  689999999988876 8899999998 99


Q ss_pred             ccc---CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHA---PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~---~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+   +++..+++++.++|||||++++..
T Consensus       113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999   568899999999999999999843

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.84  E-value=1.2e-19  Score=167.50  Aligned_cols=167  Identities=14%  Similarity=0.206  Sum_probs=131.6

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+++.++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....+++++++++.+|+.+.++++. 
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  257 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA-  257 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC-
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC-
Confidence            45666777788899999999999999999985 5789999999 99999999999988887789999999998776543 


Q ss_pred             cceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       191 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                       |+|++..+++++++  ...+|++++++|||||++++.++................+.....+.....+++.+++.++|+
T Consensus       258 -D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~  336 (359)
T 1x19_A          258 -DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE  336 (359)
T ss_dssp             -SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred             -CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence             99999999999987  789999999999999999999877654311111111111111111222334578999999999


Q ss_pred             hCCCeEEEEEecC
Q 018194          269 RVGFEVVKEKDLA  281 (359)
Q Consensus       269 ~aGF~~i~~~~~~  281 (359)
                      ++||++++...+.
T Consensus       337 ~aGf~~v~~~~~~  349 (359)
T 1x19_A          337 SLGYKDVTMVRKY  349 (359)
T ss_dssp             HHTCEEEEEEEET
T ss_pred             HCCCceEEEEecC
Confidence            9999999987763

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.84  E-value=7.6e-20  Score=167.11  Aligned_cols=158  Identities=21%  Similarity=0.218  Sum_probs=125.2

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      ++..++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....++.+++++..+|+. .+++. +||
T Consensus       161 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D  237 (332)
T 3i53_A          161 IAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAG  237 (332)
T ss_dssp             GGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCS
T ss_pred             HHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCc
Confidence            344445566789999999999999999874 6789999999 9999999999998888889999999997 35554 899


Q ss_pred             eEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          193 GAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       193 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      +|++.+++||+++.  ..+|++++++|||||++++.+...... .+ .. ...+......   ....++.+++.++|+++
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~-~~-~~d~~~~~~~---~~~~~t~~e~~~ll~~a  311 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA-GT-GMDLRMLTYF---GGKERSLAELGELAAQA  311 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C-CH-HHHHHHHHHH---SCCCCCHHHHHHHHHHT
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc-cH-HHHHHHHhhC---CCCCCCHHHHHHHHHHC
Confidence            99999999999874  899999999999999999998766543 11 11 1111111111   12356899999999999


Q ss_pred             CCeEEEEEec
Q 018194          271 GFEVVKEKDL  280 (359)
Q Consensus       271 GF~~i~~~~~  280 (359)
                      ||++++....
T Consensus       312 Gf~~~~~~~~  321 (332)
T 3i53_A          312 GLAVRAAHPI  321 (332)
T ss_dssp             TEEEEEEEEC
T ss_pred             CCEEEEEEEC
Confidence            9999998765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.84  E-value=7.1e-21  Score=171.41  Aligned_cols=169  Identities=16%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD--SLCEVVCGNFLKMPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~  188 (359)
                      ...++..+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....++.  .+++++++|+.++++ +
T Consensus        72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  148 (299)
T 3g2m_A           72 AREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-D  148 (299)
T ss_dssp             HHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-S
T ss_pred             HHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-C
Confidence            3445555555444 9999999999999999986 689999999999999999998765432  579999999999887 6


Q ss_pred             CccceEEec-ccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch---HHH-------HHHhhh-------
Q 018194          189 NHFDGAYSI-EATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK---EHV-------DIIQGI-------  248 (359)
Q Consensus       189 ~~fD~v~~~-~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~-------~~~~~~-------  248 (359)
                      ++||+|++. .+++|++  +...+|+++.++|||||++++..+...........   ...       .+...+       
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ  228 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEE
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEE
Confidence            899999865 5666665  46899999999999999999976554321000000   000       000000       


Q ss_pred             ----hc-C---C------CCCCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 018194          249 ----ER-G---D------ALPGLRSYAEITEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       249 ----~~-~---~------~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~  282 (359)
                          .. +   .      ....+++.+++.++|+++||++++...+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~  276 (299)
T 3g2m_A          229 EITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS  276 (299)
T ss_dssp             EEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             EEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence                00 0   0      001245899999999999999999988853

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.84  E-value=3.9e-20  Score=158.79  Aligned_cols=163  Identities=16%  Similarity=0.178  Sum_probs=119.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDS----LCEVVCGNFLKM  184 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~  184 (359)
                      ..+.+.+.+...++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++....+++.    +++++++|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            3344555555567889999999999999999985 33799999999999999999987766654    799999999887


Q ss_pred             CCCCCccceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHH
Q 018194          185 PFEDNHFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (359)
                      ++++++||+|++..+++|+++.  ..+++++.++|||||.++.......   ..........   ..........++.++
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~  170 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEY---NFHYGNLFEG---NLRHRDHRFEWTRKE  170 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGG---GGCCCCT--------GGGCCTTSBCHHH
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhh---hhhhcccCcc---cccccCceeeecHHH
Confidence            7777899999999999999855  7999999999999996665432111   1000000000   000011123457888


Q ss_pred             HH----HHHHhCCCeEEEEE
Q 018194          263 IT----EIAKRVGFEVVKEK  278 (359)
Q Consensus       263 ~~----~~l~~aGF~~i~~~  278 (359)
                      +.    ++++++||++....
T Consensus       171 l~~~~~~l~~~~Gf~v~~~~  190 (219)
T 3jwg_A          171 FQTWAVKVAEKYGYSVRFLQ  190 (219)
T ss_dssp             HHHHHHHHHHHHTEEEEEEE
T ss_pred             HHHHHHHHHHHCCcEEEEEe
Confidence            88    88999999876654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.84  E-value=2.2e-19  Score=166.27  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=130.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ...++..++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....++.++++++.+|+. .+++. 
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-  267 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-  267 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence            355666777778899999999999999999884 6789999999 9999999999998888889999999998 45555 


Q ss_pred             ccceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      .||+|++..+++++++..  .+|+++++.|||||++++.+.......... .....+......+   ...++.+++.++|
T Consensus       268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~---g~~~t~~e~~~ll  343 (369)
T 3gwz_A          268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVG---GAERSESEFAALL  343 (369)
T ss_dssp             SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHS---CCCBCHHHHHHHH
T ss_pred             CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcC---CccCCHHHHHHHH
Confidence            899999999999998765  899999999999999999987665432211 1111111111111   2356889999999


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      +++||++++...+
T Consensus       344 ~~aGf~~~~~~~~  356 (369)
T 3gwz_A          344 EKSGLRVERSLPC  356 (369)
T ss_dssp             HTTTEEEEEEEEC
T ss_pred             HHCCCeEEEEEEC
Confidence            9999999998764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.84  E-value=2.3e-20  Score=167.53  Aligned_cols=155  Identities=12%  Similarity=0.036  Sum_probs=109.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHH----h-hcCCEE--EEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEcCCCCCC-----
Q 018194          120 VKAGDRILDVGCGVGGPMRAIA----A-HSRANV--VGITINEYQVNRARLHNKKAGLDSLCEV--VCGNFLKMP-----  185 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~----~-~~~~~v--~g~D~s~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~~-----  185 (359)
                      ..++.+|||||||+|.++..++    . .++..|  +|+|+|+.|++.|+++....+...++.+  ..+++.+++     
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence            3567899999999998665433    2 245644  9999999999999998865421234554  455554432     


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                       +++++||+|++..+++|++|+..+|++++++|||||++++........+   ..........+. ......+.+..++.
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  205 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW---DKLWKKYGSRFP-QDDLCQYITSDDLT  205 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHH---HHHHHHHGGGSC-CCTTCCCCCHHHHH
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccH---HHHHHHHHHhcc-CCCcccCCCHHHHH
Confidence             4578999999999999999999999999999999999999754321110   011111111111 11123567899999


Q ss_pred             HHHHhCCCeEEEEE
Q 018194          265 EIAKRVGFEVVKEK  278 (359)
Q Consensus       265 ~~l~~aGF~~i~~~  278 (359)
                      ++|+++||+++...
T Consensus       206 ~~l~~aGf~~~~~~  219 (292)
T 2aot_A          206 QMLDNLGLKYECYD  219 (292)
T ss_dssp             HHHHHHTCCEEEEE
T ss_pred             HHHHHCCCceEEEE
Confidence            99999999987643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.84  E-value=4.6e-20  Score=158.41  Aligned_cols=139  Identities=20%  Similarity=0.252  Sum_probs=112.1

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH  202 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~  202 (359)
                      +.+|||+|||+|.++..+++.     +|+|+|+.+++.++++        +++++.+|+.++++++++||+|++..+++|
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            789999999999999988764     9999999999998875        478999999998888889999999999999


Q ss_pred             cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC---CCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          203 APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG---DALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       203 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                      ++++..+++++.++|+|||.+++.++.....       ..........+   .....+++.+++.++|+++||++++...
T Consensus       115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          115 VDDPERALKEAYRILKKGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             SSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCCCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence            9999999999999999999999976543211       11111111111   1123467899999999999999998776


Q ss_pred             cC
Q 018194          280 LA  281 (359)
Q Consensus       280 ~~  281 (359)
                      ..
T Consensus       188 ~~  189 (219)
T 1vlm_A          188 TL  189 (219)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.84  E-value=5.3e-20  Score=160.37  Aligned_cols=164  Identities=21%  Similarity=0.251  Sum_probs=122.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+...++..++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++...    .++++.++|+.++++++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~  107 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDS  107 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTC
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCC
Confidence            34666777778899999999999999999986 55 999999999999999887542    3689999999998888889


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCc------h-----HHHHHH------hhhhcCCC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN------K-----EHVDII------QGIERGDA  253 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~-----~~~~~~------~~~~~~~~  253 (359)
                      ||+|++..+++|++++..+++++.++|||||++++.............      .     ......      ..+.....
T Consensus       108 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (243)
T 3bkw_A          108 FDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV  187 (243)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSC
T ss_pred             ceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCce
Confidence            999999999999999999999999999999999987643210000000      0     000000      00000000


Q ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          254 LPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       254 ~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ....++.+++.++|+++||++++....
T Consensus       188 ~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          188 VKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             CEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEEeccHHHHHHHHHHcCCEeeeeccC
Confidence            112258899999999999999988765

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.84  E-value=3.3e-19  Score=153.78  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=120.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~  189 (359)
                      ..+.+.+. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.        .++..+|+.+  .+++++
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~   92 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEE   92 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTT
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCC
Confidence            34555555 67889999999999999999987 689999999999999987653        3789999987  567778


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh-hhc------CCCCCCCCCHHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG-IER------GDALPGLRSYAE  262 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~  262 (359)
                      +||+|++..+++|++++..+++++.++|+|||.+++.......     .......... +..      ......+++.++
T Consensus        93 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (230)
T 3cc8_A           93 QFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH-----ISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNE  167 (230)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS-----HHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHH
T ss_pred             ccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch-----HHHHHHHhcCCceeccCCCCCcceEEEecHHH
Confidence            9999999999999999999999999999999999987543221     0111111110 000      001124578999


Q ss_pred             HHHHHHhCCCeEEEEEecCCC
Q 018194          263 ITEIAKRVGFEVVKEKDLAKP  283 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~~~~  283 (359)
                      +.++|+++||++++...+...
T Consensus       168 ~~~~l~~~Gf~~~~~~~~~~~  188 (230)
T 3cc8_A          168 MLRMFLKAGYSISKVDRVYVD  188 (230)
T ss_dssp             HHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHHHHHcCCeEEEEEecccC
Confidence            999999999999998887543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.84  E-value=1.1e-20  Score=162.84  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=116.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---PFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~  188 (359)
                      ..++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++       .++.+..+|+.++   ++..
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~  113 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPV  113 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccccc
Confidence            34555555556789999999999999999987 78999999999999999876       3578888888776   4333


Q ss_pred             -CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCc-hHH-HHHHhhhhcC--CCCCCCCCHHHH
Q 018194          189 -NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN-KEH-VDIIQGIERG--DALPGLRSYAEI  263 (359)
Q Consensus       189 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~~  263 (359)
                       .+||+|++..+++ .+++..+++++.++|||||++++.++.......... ..+ ...+..+...  .....+++.+++
T Consensus       114 ~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (227)
T 3e8s_A          114 GKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW  192 (227)
T ss_dssp             CCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred             CCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHH
Confidence             4599999999999 789999999999999999999997754432111100 000 0000000000  011124589999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|+++||++++....
T Consensus       193 ~~~l~~aGf~~~~~~~~  209 (227)
T 3e8s_A          193 LNALDMAGLRLVSLQEP  209 (227)
T ss_dssp             HHHHHHTTEEEEEEECC
T ss_pred             HHHHHHcCCeEEEEecC
Confidence            99999999999988763

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.83  E-value=2.1e-20  Score=153.92  Aligned_cols=141  Identities=17%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      +++.+.+.++.+|||+|||+|.++..+++... +|+|+|+|+.+++.++++      .+++++..+|   .++++++||+
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~   78 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDF   78 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEE
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEE
Confidence            34445667888999999999999999998654 999999999999999887      2479999999   5677889999


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      |++..+++|++++..+++++.++|||||++++.++.........               .....++.+++.++|+  ||+
T Consensus        79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~--Gf~  141 (170)
T 3i9f_A           79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGP---------------PLSIRMDEKDYMGWFS--NFV  141 (170)
T ss_dssp             EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS---------------CGGGCCCHHHHHHHTT--TEE
T ss_pred             EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCc---------------hHhhhcCHHHHHHHHh--CcE
Confidence            99999999999999999999999999999999887654321111               1113468899999998  999


Q ss_pred             EEEEEecC
Q 018194          274 VVKEKDLA  281 (359)
Q Consensus       274 ~i~~~~~~  281 (359)
                      +++...+.
T Consensus       142 ~~~~~~~~  149 (170)
T 3i9f_A          142 VEKRFNPT  149 (170)
T ss_dssp             EEEEECSS
T ss_pred             EEEccCCC
Confidence            99987764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.83  E-value=7.5e-20  Score=156.06  Aligned_cols=143  Identities=18%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|||+|||+|.++..+    +. +|+|+|+|+.+++.++++.      .+++++++|+.++++++++||+|++..++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  105 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL  105 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred             CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence            7889999999999998877    45 9999999999999998875      46899999999998888899999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +|++++..+++++.++|||||.+++.++.....+.   .........-........+++.+++.++|+  | .+.....+
T Consensus       106 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G-~~~~~~~~  179 (211)
T 2gs9_A          106 EFVEDVERVLLEARRVLRPGGALVVGVLEALSPWA---ALYRRLGEKGVLPWAQARFLAREDLKALLG--P-PEAEGEAV  179 (211)
T ss_dssp             TTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHH---HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S-CSEEEEEC
T ss_pred             hhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHH---HHHHHHhhccCccccccccCCHHHHHHHhc--C-cceeEEEE
Confidence            99999999999999999999999997654432111   000100000000011235679999999998  8 43333333

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.83  E-value=1.3e-19  Score=152.90  Aligned_cols=149  Identities=19%  Similarity=0.232  Sum_probs=122.3

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      .+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+++ ++++..+|+.++++ +++||
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~~D   99 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-DRQYD   99 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-CCCEE
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-CCCce
Confidence            3555666667889999999999999999987 679999999999999999998887764 69999999999887 78999


Q ss_pred             eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      +|++..+++|++  +...+++++.++|||||++++.++.....+..              .......++.+++.++|++ 
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~-  164 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------------TVGFPFAFKEGELRRYYEG-  164 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC--------------CSCCSCCBCTTHHHHHTTT-
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC--------------CCCCCCccCHHHHHHHhcC-
Confidence            999999999997  78999999999999999998876554432211              1112234577899999986 


Q ss_pred             CCeEEEEEec
Q 018194          271 GFEVVKEKDL  280 (359)
Q Consensus       271 GF~~i~~~~~  280 (359)
                       |++++....
T Consensus       165 -f~~~~~~~~  173 (199)
T 2xvm_A          165 -WERVKYNED  173 (199)
T ss_dssp             -SEEEEEECC
T ss_pred             -CeEEEeccc
Confidence             999887643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.83  E-value=1.6e-19  Score=165.19  Aligned_cols=166  Identities=13%  Similarity=0.218  Sum_probs=129.0

Q ss_pred             HHHHHhcCC--CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..+++.++.  .++.+|||+|||+|.++..+++. ++.+++++|+| .+++.++++....++.++++++.+|+.+.+++.
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  231 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN  231 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence            345555666  77889999999999999999985 57899999999 999999999988888778999999998876654


Q ss_pred             CccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEHVDIIQGIERGDALPGLRSYAEITE  265 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (359)
                      + ||+|++..+++|+++  ...++++++++|+|||++++.++......... ......+.......  ....++.+++.+
T Consensus       232 ~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~~~~~  308 (335)
T 2r3s_A          232 D-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTP--NGDAYTFAEYES  308 (335)
T ss_dssp             C-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSS--SCCCCCHHHHHH
T ss_pred             C-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCC--CCCcCCHHHHHH
Confidence            4 999999999999964  57999999999999999999887654321111 11111111111111  124568999999


Q ss_pred             HHHhCCCeEEEEEecC
Q 018194          266 IAKRVGFEVVKEKDLA  281 (359)
Q Consensus       266 ~l~~aGF~~i~~~~~~  281 (359)
                      +|+++||++++...+.
T Consensus       309 ll~~aGf~~~~~~~~~  324 (335)
T 2r3s_A          309 MFSNAGFSHSQLHSLP  324 (335)
T ss_dssp             HHHHTTCSEEEEECCT
T ss_pred             HHHHCCCCeeeEEECC
Confidence            9999999999987653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.83  E-value=2e-20  Score=165.24  Aligned_cols=117  Identities=17%  Similarity=0.256  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      ........+.+...+  .++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++..      +++++++|+.+
T Consensus        34 ~~~~~~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~  104 (263)
T 3pfg_A           34 HREAADLAALVRRHS--PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRD  104 (263)
T ss_dssp             HHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTT
T ss_pred             HHHHHHHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHH
Confidence            334444455555544  35689999999999999999986 5799999999999999998742      68999999999


Q ss_pred             CCCCCCccceEEecc-cccccC---CHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          184 MPFEDNHFDGAYSIE-ATCHAP---KLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~-~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +++ +++||+|++.. +++|++   +...+++++.++|||||++++.++..
T Consensus       105 ~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          105 FSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWF  154 (263)
T ss_dssp             CCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            887 68999999998 999996   56788999999999999999965433

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.83  E-value=1.5e-19  Score=158.12  Aligned_cols=145  Identities=15%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCCeEEEEcCCC
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK----------A------GLDSLCEVVCGNFL  182 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~----------~------~~~~~i~~~~~d~~  182 (359)
                      ...++.+|||+|||+|..+..|++. |.+|+|+|+|+.|++.|+++...          .      ....+++++++|+.
T Consensus        65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            3457889999999999999999986 78999999999999999876531          0      01257999999999


Q ss_pred             CCCCCC-CccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCC
Q 018194          183 KMPFED-NHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS  259 (359)
Q Consensus       183 ~~~~~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (359)
                      ++++++ ++||+|++..++++++  +...+++++.++|||||++++..+.....                ...+.+...+
T Consensus       144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~----------------~~~g~~~~~~  207 (252)
T 2gb4_A          144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPT----------------KHAGPPFYVP  207 (252)
T ss_dssp             TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT----------------SCCCSSCCCC
T ss_pred             cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCc----------------cCCCCCCCCC
Confidence            988654 8999999999999986  46789999999999999997654432210                0012223368


Q ss_pred             HHHHHHHHHhCCCeEEEEEecC
Q 018194          260 YAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      .+++.++++. +|+++..+.+.
T Consensus       208 ~~el~~~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          208 SAELKRLFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             HHHHHHHHTT-TEEEEEEEEEE
T ss_pred             HHHHHHHhhC-CeEEEEEeccc
Confidence            8999999987 59998877653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.83  E-value=4.1e-20  Score=163.01  Aligned_cols=161  Identities=16%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.+...+.  ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++..     .  .+.++|+.+++++++
T Consensus        44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~  113 (260)
T 2avn_A           44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSG  113 (260)
T ss_dssp             HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTT
T ss_pred             HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCC
Confidence            3444445444  6789999999999999999986 6799999999999999988753     1  288999999988889


Q ss_pred             ccceEEeccccccc-CCHHHHHHHHHhccCCCCEEEEEEeeeCcccc----cCc-hHHHHHHh-hhhc-CCC----CCCC
Q 018194          190 HFDGAYSIEATCHA-PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE----AEN-KEHVDIIQ-GIER-GDA----LPGL  257 (359)
Q Consensus       190 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~~~-~~~~~~~~-~~~~-~~~----~~~~  257 (359)
                      +||+|++..++.|+ +++..+++++.++|||||++++..........    ... ........ .... +..    ...+
T Consensus       114 ~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (260)
T 2avn_A          114 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYA  193 (260)
T ss_dssp             CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEEC
T ss_pred             CEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEec
Confidence            99999998877766 78999999999999999999987644321000    000 00000010 0000 000    0025


Q ss_pred             CCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194          258 RSYAEITEIAKRVGFEVVKEKDLAKP  283 (359)
Q Consensus       258 ~~~~~~~~~l~~aGF~~i~~~~~~~~  283 (359)
                      ++++++.++   +||++++...+...
T Consensus       194 ~~~~~l~~l---aGf~~~~~~~~~~~  216 (260)
T 2avn_A          194 FKPEDLDSL---EGFETVDIRGIGVM  216 (260)
T ss_dssp             BCGGGGSSC---TTEEEEEEEEECSS
T ss_pred             cCHHHHHHh---cCceEEEEECCCCc
Confidence            677788777   99999998877543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.82  E-value=2.6e-20  Score=166.89  Aligned_cols=149  Identities=15%  Similarity=0.112  Sum_probs=110.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-----------------CCC------------
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-----------------GLD------------  171 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----------------~~~------------  171 (359)
                      .++.+|||||||+|.....++...+.+|+|+|+|+.|++.|++++...                 +..            
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            367899999999999655455545679999999999999998865421                 100            


Q ss_pred             CCeEEEEcCCCC-CCC-----CCCccceEEecccccc----cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          172 SLCEVVCGNFLK-MPF-----EDNHFDGAYSIEATCH----APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       172 ~~i~~~~~d~~~-~~~-----~~~~fD~v~~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      ..++++.+|+.+ +|+     ++++||+|+++.+++|    ++++..+|++++++|||||+|++.+......+...    
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~----  225 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG----  225 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET----
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC----
Confidence            014677789987 553     3467999999999999    66789999999999999999999754322111100    


Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                              ........++.+++.++|+++||+++....+.
T Consensus       226 --------~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          226 --------EARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             --------TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --------CeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence                    00001235689999999999999999987764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.82  E-value=3.1e-19  Score=165.79  Aligned_cols=164  Identities=24%  Similarity=0.281  Sum_probs=125.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+++.++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....++.++++++.+|+.+ +++. .
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~  248 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-T  248 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-C
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-C
Confidence            34556667778899999999999999999985 5689999999 99999999999988887789999999976 4443 4


Q ss_pred             cceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEEe--eeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYEW--VTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ||+|++..+++|+++..  .++++++++|||||++++.++  ......................+   ...++.+++.++
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l  325 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG---GRVRTRDEVVDL  325 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS---CCCCCHHHHHHH
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCC---CcCCCHHHHHHH
Confidence            99999999999998764  899999999999999999887  43221110000111111111111   245689999999


Q ss_pred             HHhCCCeEEEEEecC
Q 018194          267 AKRVGFEVVKEKDLA  281 (359)
Q Consensus       267 l~~aGF~~i~~~~~~  281 (359)
                      |+++||++++...+.
T Consensus       326 l~~aGf~~~~~~~~~  340 (374)
T 1qzz_A          326 AGSAGLALASERTSG  340 (374)
T ss_dssp             HHTTTEEEEEEEEEC
T ss_pred             HHHCCCceEEEEECC
Confidence            999999999988763

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.82  E-value=1.4e-19  Score=167.18  Aligned_cols=157  Identities=14%  Similarity=0.106  Sum_probs=120.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~  197 (359)
                      .++.+|||||||+|.++..+++. ++.+++++|+ +.+++.|+++....++.++++++.+|+.+.  |++ ++||+|++.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS  255 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence            45679999999999999999884 6789999999 999999999998887777899999999885  465 789999999


Q ss_pred             ccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh--hhcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          198 EATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG--IERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       198 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      .++|++++.  ..+|++++++|||||++++.+....................  ..........++.+++.++|+++||+
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~  335 (363)
T 3dp7_A          256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE  335 (363)
T ss_dssp             SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence            999999764  58899999999999999998866543211110000000000  01112223456899999999999999


Q ss_pred             EEEEEe
Q 018194          274 VVKEKD  279 (359)
Q Consensus       274 ~i~~~~  279 (359)
                      ++++..
T Consensus       336 ~v~~~~  341 (363)
T 3dp7_A          336 VEEIQD  341 (363)
T ss_dssp             ESCCCC
T ss_pred             EEEEEe
Confidence            987654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.82  E-value=1.5e-20  Score=166.06  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=110.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----------------------------  170 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----------------------------  170 (359)
                      +..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++.....                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            4567889999999999887766654223799999999999999987654210                            


Q ss_pred             CCCeE-EEEcCCCCC-CC---CCCccceEEeccccccc----CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          171 DSLCE-VVCGNFLKM-PF---EDNHFDGAYSIEATCHA----PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       171 ~~~i~-~~~~d~~~~-~~---~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      ..++. ++++|+.+. |+   ..++||+|++..+++|+    ++...++++++++|||||+|++.++.....+....   
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~---  208 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK---  208 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT---
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCC---
Confidence            01233 889999873 33   25789999999999986    35678999999999999999997643322111000   


Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                           .    ......++.+++.++|+++||++++....
T Consensus       209 -----~----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          209 -----R----EFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             -----E----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -----e----EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence                 0    00112458899999999999999988776

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.81  E-value=2.3e-19  Score=154.63  Aligned_cols=169  Identities=24%  Similarity=0.339  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .+...+.+.+.+.  ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+  .+++++++|+.++++
T Consensus        25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~   99 (227)
T 1ve3_A           25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF   99 (227)
T ss_dssp             HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC
Confidence            3344455555543  4789999999999999999886 4599999999999999999987765  579999999999888


Q ss_pred             CCCccceEEeccc--ccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH---HHHH-Hhhhhc-CCC------
Q 018194          187 EDNHFDGAYSIEA--TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE---HVDI-IQGIER-GDA------  253 (359)
Q Consensus       187 ~~~~fD~v~~~~~--l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~------  253 (359)
                      ++++||+|++..+  +++.+++..+++++.++|||||++++.+.............   .... ...... ...      
T Consensus       100 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (227)
T 1ve3_A          100 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIE  179 (227)
T ss_dssp             CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEE
Confidence            7889999999999  55666889999999999999999999765432211110000   0000 000000 000      


Q ss_pred             -------C---CCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          254 -------L---PGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       254 -------~---~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                             .   ...+. .++.++|+++||+.++...+.
T Consensus       180 ~~~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~  216 (227)
T 1ve3_A          180 FKSEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVG  216 (227)
T ss_dssp             C-----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEET
T ss_pred             eccchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhC
Confidence                   0   01222 478999999999999998874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.81  E-value=4.7e-19  Score=161.99  Aligned_cols=162  Identities=18%  Similarity=0.131  Sum_probs=125.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..++..+ .+|||+|||+|..+..+++. ++.+++++|+ +.+++.++++....++.++++++.+|+.+ +++ ++
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~  233 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SN  233 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SS
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CC
Confidence            44556666666 89999999999999999885 6789999999 99999999998877766789999999987 555 67


Q ss_pred             cceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ||+|++..++||+++..  .++++++++|||||++++.+................+......+   ...++.+++.++|+
T Consensus       234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~e~~~ll~  310 (334)
T 2ip2_A          234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACA---GRHRTTEEVVDLLG  310 (334)
T ss_dssp             CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHS---CCCCBHHHHHHHHH
T ss_pred             CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCC---CcCCCHHHHHHHHH
Confidence            99999999999998665  99999999999999999998765432111111111111111111   13458999999999


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||++++....
T Consensus       311 ~aGf~~~~~~~~  322 (334)
T 2ip2_A          311 RGGFAVERIVDL  322 (334)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCceeEEEEC
Confidence            999999988765

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.81  E-value=5.8e-20  Score=156.46  Aligned_cols=159  Identities=22%  Similarity=0.306  Sum_probs=118.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..++.+|||+|||+|..+..++...+.+|+|+|+|+.+++.++++....+  .++++.++|+.++++++++||+|++..+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~   98 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGT   98 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcCh
Confidence            45678999999999998554444467899999999999999999987765  4689999999998888899999999999


Q ss_pred             cccc--CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCC-CCCCCCHHHHHHHHHhCCCeEE
Q 018194          200 TCHA--PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDA-LPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       200 l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      ++|+  +++..+++++.++|||||++++.++...+....... .............. ...+++.+++.++++++||...
T Consensus        99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~  178 (209)
T 2p8j_A           99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK  178 (209)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence            9999  578999999999999999999987665332110000 00000000000111 1135688999999999999887


Q ss_pred             EEEec
Q 018194          276 KEKDL  280 (359)
Q Consensus       276 ~~~~~  280 (359)
                      +...+
T Consensus       179 ~~~~~  183 (209)
T 2p8j_A          179 EDRVV  183 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            65443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.81  E-value=9.7e-19  Score=161.58  Aligned_cols=164  Identities=23%  Similarity=0.267  Sum_probs=127.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+++.++..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....++.++++++.+|+.+ +++. .
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~  249 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-K  249 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-C
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-C
Confidence            34556667778899999999999999999885 5689999999 99999999999888887789999999976 4443 4


Q ss_pred             cceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEee-eCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWV-TTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ||+|++..+++|+++.  ..++++++++|||||++++.++. .....................+   ...++.+++.++|
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~e~~~ll  326 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLG---GALRTREKWDGLA  326 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHS---CCCCBHHHHHHHH
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcC---CcCCCHHHHHHHH
Confidence            9999999999999876  58999999999999999998876 3322111101111111111111   2456899999999


Q ss_pred             HhCCCeEEEEEecC
Q 018194          268 KRVGFEVVKEKDLA  281 (359)
Q Consensus       268 ~~aGF~~i~~~~~~  281 (359)
                      +++||++++...+.
T Consensus       327 ~~aGf~~~~~~~~~  340 (360)
T 1tw3_A          327 ASAGLVVEEVRQLP  340 (360)
T ss_dssp             HHTTEEEEEEEEEE
T ss_pred             HHCCCeEEEEEeCC
Confidence            99999999987763

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.81  E-value=7.7e-19  Score=161.74  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=126.1

Q ss_pred             HHHHhcCCCC-CCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194          113 MAVDLIDVKA-GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN  189 (359)
Q Consensus       113 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  189 (359)
                      .++..++..+ +.+|||||||+|.++..+++. ++.+++++|+ +.+++.++++....++.++++++.+|+.+.+ +..+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            4555666666 889999999999999999884 6789999999 8899999999988888778999999998865 1346


Q ss_pred             ccceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccC-chHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE-NKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      .||+|++..++||+++.  ..++++++++|||||++++.+.......... ......+........  ...++.+++.++
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~e~~~l  325 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNH--GELHPTPWIAGV  325 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTT--CCCCCHHHHHHH
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCC--CCcCCHHHHHHH
Confidence            69999999999999865  8999999999999999999987665432211 111111111111111  235689999999


Q ss_pred             HHhCCCeEEEE
Q 018194          267 AKRVGFEVVKE  277 (359)
Q Consensus       267 l~~aGF~~i~~  277 (359)
                      |+++||++++.
T Consensus       326 l~~aGf~~~~~  336 (352)
T 3mcz_A          326 VRDAGLAVGER  336 (352)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCceeee
Confidence            99999999873

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.81  E-value=5.5e-19  Score=162.43  Aligned_cols=159  Identities=17%  Similarity=0.142  Sum_probs=119.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..++..++.+|||||||+|.++..+++. ++.+++++|+ +.++.  +++....++.++++++.+|+. .+++  +
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~  247 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--H  247 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--C
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC--C
Confidence            45666777888899999999999999999884 6779999999 45544  333333455678999999997 3455  8


Q ss_pred             cceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ||+|++..++||+++.  ..+|++++++|||||++++.++...............+.....   .....++.+++.++|+
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~---~~~~~~t~~e~~~ll~  324 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAA---RTGQERTAAELEPLFT  324 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHT---TSCCCCBHHHHHHHHH
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhc---CCCcCCCHHHHHHHHH
Confidence            9999999999999987  6999999999999999999987665432222111111111111   1124568999999999


Q ss_pred             hCCCeEEEEEe
Q 018194          269 RVGFEVVKEKD  279 (359)
Q Consensus       269 ~aGF~~i~~~~  279 (359)
                      ++||++++...
T Consensus       325 ~aGf~~~~~~~  335 (348)
T 3lst_A          325 AAGLRLDRVVG  335 (348)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCceEEEEE
Confidence            99999998876

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.80  E-value=8.2e-19  Score=152.82  Aligned_cols=110  Identities=16%  Similarity=0.305  Sum_probs=94.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      +.+.+...+.  ++.+|||+|||+|.++..+++.  .+|+|+|+|+.+++.++++....+  .++++.++|+.+++++ +
T Consensus        23 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~   95 (243)
T 3d2l_A           23 WVAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-E   95 (243)
T ss_dssp             HHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-S
T ss_pred             HHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-C
Confidence            4445555543  5689999999999999999886  799999999999999999987765  4689999999988765 7


Q ss_pred             ccceEEecc-ccccc---CCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIE-ATCHA---PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||+|++.. +++|+   .+...+++++.++|||||++++.
T Consensus        96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            899999986 99998   45778999999999999999874

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.80  E-value=1.2e-19  Score=157.67  Aligned_cols=115  Identities=17%  Similarity=0.289  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .....+.+...+  .++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++.      .+++++++|+.++++
T Consensus        27 ~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~   97 (239)
T 3bxo_A           27 ASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL   97 (239)
T ss_dssp             HHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC
T ss_pred             HHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc
Confidence            334444455444  567899999999999999999863 49999999999999998874      358999999998876


Q ss_pred             CCCccceEEe-cccccccC---CHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          187 EDNHFDGAYS-IEATCHAP---KLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       187 ~~~~fD~v~~-~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                       +++||+|+| ..+++|++   +...+++++.++|||||++++.++...
T Consensus        98 -~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A           98 -GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             -CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence             678999995 45899984   567999999999999999999765443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.80  E-value=8.4e-19  Score=148.49  Aligned_cols=144  Identities=16%  Similarity=0.235  Sum_probs=114.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.  ++.+.++|+.++++++++||+|++....
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~~  104 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFCH  104 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence            456 9999999999999999986 67999999999999999999887764  6999999999988888899999996432


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      .+..+...+++++.++|||||.+++.++.......           ...........++.+++.++|+  ||+++.....
T Consensus       105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY-----------NTGGPKDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-----------TSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-----------CCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            22246889999999999999999997765432110           0000011124678999999999  9999988766


Q ss_pred             C
Q 018194          281 A  281 (359)
Q Consensus       281 ~  281 (359)
                      .
T Consensus       172 ~  172 (202)
T 2kw5_A          172 E  172 (202)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.80  E-value=1e-19  Score=163.19  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=109.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG-------------------------------  169 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~-------------------------------  169 (359)
                      ++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|+++....+                               
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            6789999999999999999986 46799999999999999998866543                               


Q ss_pred             --------------------------CCCCeEEEEcCCCCCC-----CCCCccceEEecccccccC------CHHHHHHH
Q 018194          170 --------------------------LDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEATCHAP------KLEDVYAE  212 (359)
Q Consensus       170 --------------------------~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~------~~~~~l~~  212 (359)
                                                .+.+++|.++|+...+     +..++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      2258999999998654     4678999999999997774      68899999


Q ss_pred             HHhccCCCCEEEEEEeeeCcccc---cCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh--CCCeEEEEEecCCCCCCc
Q 018194          213 VFRVLKPGSLYVSYEWVTTDKYE---AENKEHVDIIQGIERGDALPGLRSYAEITEIAKR--VGFEVVKEKDLAKPPAQP  287 (359)
Q Consensus       213 ~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGF~~i~~~~~~~~~~~~  287 (359)
                      ++++|||||+|++...... .+.   ............+        ...++++.++|.+  +||+.++...........
T Consensus       206 ~~~~LkpGG~lil~~~~~~-~y~~~~~~~~~~~~~~~~~--------~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g  276 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWS-SYGKRKTLTETIYKNYYRI--------QLKPEQFSSYLTSPDVGFSSYELVATPHNTSKG  276 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHH-HHHTTTTSCHHHHHHHHHC--------CCCGGGHHHHHTSTTTCCCEEEEC---------
T ss_pred             HHHHhCCCcEEEEecCCch-hhhhhhcccHHHHhhhhcE--------EEcHHHHHHHHHhcCCCceEEEEeccCCCCCCC
Confidence            9999999999998421110 110   1111111111111        1235789999998  999988765543222334


Q ss_pred             hhh
Q 018194          288 WWT  290 (359)
Q Consensus       288 w~~  290 (359)
                      |.+
T Consensus       277 ~~r  279 (292)
T 3g07_A          277 FQR  279 (292)
T ss_dssp             --C
T ss_pred             ccc
Confidence            443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.79  E-value=6.5e-18  Score=143.28  Aligned_cols=139  Identities=14%  Similarity=0.076  Sum_probs=114.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ....++..+.+.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....++ ++++++++|+.+.....
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~  106 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDL  106 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTS
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcC
Confidence            3455677788889999999999999999999986 358999999999999999999988887 58999999997654344


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++..+++   +...+++++.++|||||++++......                           +..++.++++
T Consensus       107 ~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------~~~~~~~~l~  156 (204)
T 3e05_A          107 PDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD---------------------------TLTKAVEFLE  156 (204)
T ss_dssp             CCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH---------------------------HHHHHHHHHH
T ss_pred             CCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc---------------------------cHHHHHHHHH
Confidence            7899999988765   788999999999999999998542211                           2357888999


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++|| .++...+
T Consensus       157 ~~g~-~~~~~~~  167 (204)
T 3e05_A          157 DHGY-MVEVACV  167 (204)
T ss_dssp             HTTC-EEEEEEE
T ss_pred             HCCC-ceeEEEE
Confidence            9999 5544443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.79  E-value=1.8e-18  Score=155.04  Aligned_cols=118  Identities=17%  Similarity=0.267  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcCCCCCC-
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD---SLCEVVCGNFLKMP-  185 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~-  185 (359)
                      +.+.+...+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+..   .++.+..+|+.+++ 
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            3455555555567889999999999999999986 679999999999999999876443221   36789999998877 


Q ss_pred             --CCCCccceEEec-ccccccCC-------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 --FEDNHFDGAYSI-EATCHAPK-------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 --~~~~~fD~v~~~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                        +++++||+|++. .+++|+++       +..+++++.++|||||++++...
T Consensus       124 ~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             HSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence              778999999998 89999999       99999999999999999998653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.79  E-value=4e-18  Score=144.58  Aligned_cols=136  Identities=14%  Similarity=0.181  Sum_probs=112.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.+..+++++++++++|+.+.......
T Consensus        44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            345666778888999999999999999999997 7899999999999999999999988877899999999883323457


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ||+|++...+    +.. +++++.++|||||++++......                           +..++.+.+++.
T Consensus       123 ~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~---------------------------~~~~~~~~l~~~  170 (204)
T 3njr_A          123 PEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE---------------------------SETLLTQLHARH  170 (204)
T ss_dssp             CSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH---------------------------HHHHHHHHHHHH
T ss_pred             CCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc---------------------------cHHHHHHHHHhC
Confidence            9999987744    566 99999999999999998532110                           235777889999


Q ss_pred             CCeEEEEEe
Q 018194          271 GFEVVKEKD  279 (359)
Q Consensus       271 GF~~i~~~~  279 (359)
                      ||++.....
T Consensus       171 g~~i~~i~~  179 (204)
T 3njr_A          171 GGQLLRIDI  179 (204)
T ss_dssp             CSEEEEEEE
T ss_pred             CCcEEEEEe
Confidence            999887654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.79  E-value=1.3e-19  Score=170.75  Aligned_cols=165  Identities=19%  Similarity=0.219  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCC
Q 018194          103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNF  181 (359)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~  181 (359)
                      +........+.++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++    +.+... .+...+.
T Consensus        88 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~  162 (416)
T 4e2x_A           88 MREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATA  162 (416)
T ss_dssp             HHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhH
Confidence            44556667777888888888999999999999999999985 67999999999999998875    222111 1223344


Q ss_pred             CCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC-CCCCCCCCH
Q 018194          182 LKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG-DALPGLRSY  260 (359)
Q Consensus       182 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  260 (359)
                      ..+++++++||+|++.++++|++|+..++++++++|||||++++.......        .... ..+... .....+++.
T Consensus       163 ~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--------~~~~-~~~~~~~~~~~~~~s~  233 (416)
T 4e2x_A          163 DDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD--------IVAK-TSFDQIFDEHFFLFSA  233 (416)
T ss_dssp             HHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH--------HHHH-TCGGGCSTTCCEECCH
T ss_pred             hhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH--------hhhh-cchhhhhhhhhhcCCH
Confidence            444566789999999999999999999999999999999999986433211        0000 001000 112235689


Q ss_pred             HHHHHHHHhCCCeEEEEEecC
Q 018194          261 AEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      +++.++++++||++++...+.
T Consensus       234 ~~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          234 TSVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHcCCEEEEEEEcc
Confidence            999999999999999988864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.79  E-value=1.5e-18  Score=153.25  Aligned_cols=151  Identities=13%  Similarity=0.122  Sum_probs=115.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----------------------------  170 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----------------------------  170 (359)
                      +..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4456789999999999999988875224999999999999999988754320                            


Q ss_pred             CCCe-EEEEcCCCCCC-CCC---CccceEEeccccc----ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          171 DSLC-EVVCGNFLKMP-FED---NHFDGAYSIEATC----HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       171 ~~~i-~~~~~d~~~~~-~~~---~~fD~v~~~~~l~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      ..++ ++.++|+.+.+ +++   ++||+|++..+++    +.+++..+++++.++|||||++++.++.....+...    
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~----  208 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG----  208 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET----
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC----
Confidence            0127 89999998864 355   7999999999999    566789999999999999999999874332211100    


Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                              .........+.+++.++|+++||++++.....
T Consensus       209 --------~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          209 --------EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             --------TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             --------CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence                    00001234578899999999999999988764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.78  E-value=1.6e-18  Score=154.97  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=113.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++  ++++.++|+.+.++ +++||+|++..++
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~  194 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVF  194 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccch
Confidence            46889999999999999999987 67999999999999999999988776  79999999998776 7899999999999


Q ss_pred             cccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          201 CHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       201 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      +|++  +...+++++.++|||||.+++...........              .......++..++.++++.  |+++...
T Consensus       195 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~--~~~~~~~  258 (286)
T 3m70_A          195 MFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC--------------PLPFSFTFAENELKEYYKD--WEFLEYN  258 (286)
T ss_dssp             GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC--------------SSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC--------------CCCccccCCHHHHHHHhcC--CEEEEEE
Confidence            9985  46699999999999999988865544332211              1112234567788888864  9888765


Q ss_pred             e
Q 018194          279 D  279 (359)
Q Consensus       279 ~  279 (359)
                      .
T Consensus       259 ~  259 (286)
T 3m70_A          259 E  259 (286)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.78  E-value=2.2e-18  Score=154.84  Aligned_cols=160  Identities=12%  Similarity=0.075  Sum_probs=111.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCC------C--CCC
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-----LCEVVCGNFLK------M--PFE  187 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~------~--~~~  187 (359)
                      .++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+...     +++|.+.|+..      +  +++
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            3578999999999986666665445799999999999999999987665321     26788888832      2  245


Q ss_pred             CCccceEEeccccccc---CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccC---------c-hHHHHH----------
Q 018194          188 DNHFDGAYSIEATCHA---PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE---------N-KEHVDI----------  244 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------~-~~~~~~----------  244 (359)
                      +++||+|+|.++++|+   .+...++++++++|||||++++............         . .....+          
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            6899999999999875   4678999999999999999998664321100000         0 000000          


Q ss_pred             Hhhh-hcC--CCCC-CCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          245 IQGI-ERG--DALP-GLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       245 ~~~~-~~~--~~~~-~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ...+ ..+  ...+ .+.+++++.++++++||++++...+
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence            0000 011  1111 2667899999999999999998776

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=1.5e-18  Score=151.45  Aligned_cols=152  Identities=15%  Similarity=0.075  Sum_probs=117.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-----CccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED-----NHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~fD~v  194 (359)
                      +.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++..    ..+++++++|+.+++...     ..||+|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~-~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHS-SCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhC-CCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence            5678899999999999999999864 499999999999999998762    247999999998865321     248999


Q ss_pred             EecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccc---------cCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          195 YSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE---------AENKEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       195 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      ++..+++|++  +...+++++.++|||||++++.++.......         .....    ..........+...+.+++
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  204 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYE----LLLVMEHGIRPGIFTAEDI  204 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHH----HHHHHTTTCCCCCCCHHHH
T ss_pred             EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchh----hhhccccCCCCCccCHHHH
Confidence            9999999998  8899999999999999999998876532100         00000    1112222333455788999


Q ss_pred             HHHHHhCCCeEEEEEecCC
Q 018194          264 TEIAKRVGFEVVKEKDLAK  282 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~~~  282 (359)
                      .+++  +||+++.......
T Consensus       205 ~~~~--aGf~~~~~~~~~~  221 (245)
T 3ggd_A          205 ELYF--PDFEILSQGEGLF  221 (245)
T ss_dssp             HHHC--TTEEEEEEECCBC
T ss_pred             HHHh--CCCEEEecccccc
Confidence            9999  9999999877643

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.78  E-value=4.6e-18  Score=157.31  Aligned_cols=157  Identities=16%  Similarity=0.166  Sum_probs=117.4

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..++..++ ..++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++.       ++++++.+|+.+ +++.+
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~  262 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG  262 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC
Confidence            34455554 66778999999999999999988 46789999999 8888776532       479999999987 66654


Q ss_pred             ccceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchH----HHHHHhhhhcCCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE----HVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                        |+|++..++|++++.  ..+|++++++|||||++++.|.............    ...+.......  ....++.+++
T Consensus       263 --D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~g~~rt~~e~  338 (368)
T 3reo_A          263 --DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNP--GGKERTEKEF  338 (368)
T ss_dssp             --SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSS--BCCCCCHHHH
T ss_pred             --CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcC--CCccCCHHHH
Confidence              999999999999864  4899999999999999999987764432221111    11111111101  1235688999


Q ss_pred             HHHHHhCCCeEEEEEecC
Q 018194          264 TEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~~  281 (359)
                      .++|+++||+++++....
T Consensus       339 ~~ll~~AGF~~v~~~~~~  356 (368)
T 3reo_A          339 QALAMASGFRGFKVASCA  356 (368)
T ss_dssp             HHHHHHTTCCEEEEEEEE
T ss_pred             HHHHHHCCCeeeEEEEeC
Confidence            999999999999987663

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.78  E-value=6.6e-18  Score=155.94  Aligned_cols=156  Identities=21%  Similarity=0.213  Sum_probs=118.0

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..++..++ ..++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++.       ++++++.+|+.+ +++.+
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~~  260 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPSG  260 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCCC
Confidence            34555555 67788999999999999999988 47789999999 8888776532       479999999988 77754


Q ss_pred             ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH----HHHHHhhhhcCCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE----HVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                        |+|++..++|++++  ...+|++++++|||||++++.|.............    ...+........  ...++.++|
T Consensus       261 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~--g~~rt~~e~  336 (364)
T 3p9c_A          261 --DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG--GRERYEREF  336 (364)
T ss_dssp             --SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS--CCCCBHHHH
T ss_pred             --CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC--CccCCHHHH
Confidence              99999999999975  46899999999999999999987765432221111    111111101111  234688999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|+++||++++...+
T Consensus       337 ~~ll~~AGF~~v~~~~~  353 (364)
T 3p9c_A          337 QALARGAGFTGVKSTYI  353 (364)
T ss_dssp             HHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHCCCceEEEEEc
Confidence            99999999999998766

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.78  E-value=1.3e-17  Score=153.25  Aligned_cols=162  Identities=14%  Similarity=0.140  Sum_probs=124.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..++..++..+..+|||||||+|.++..+++ +|+.+++..|. |.+++.++++....+ .++|+++.+|+.+.+.+  .
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~--~  244 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLP--E  244 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCC--C
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCC--C
Confidence            4455666777788999999999999999998 57889999998 889999998876544 57899999999876544  4


Q ss_pred             cceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCc-hHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN-KEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      +|+|++..++|+++|.  ..+|+++++.|+|||++++.|....+...... .....+.... ..++  ..++.++|.++|
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~-~~~g--~ert~~e~~~ll  321 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLV-QTEG--QERTPTHYHMLL  321 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHH-SSSC--CCCCHHHHHHHH
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCC--cCCCHHHHHHHH
Confidence            7999999999999875  57899999999999999999976643322211 1111111111 1122  346899999999


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      +++||+++++...
T Consensus       322 ~~AGf~~v~v~~~  334 (353)
T 4a6d_A          322 SSAGFRDFQFKKT  334 (353)
T ss_dssp             HHHTCEEEEEECC
T ss_pred             HHCCCceEEEEEc
Confidence            9999999988665

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.77  E-value=6e-18  Score=140.06  Aligned_cols=137  Identities=17%  Similarity=0.188  Sum_probs=111.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      .....++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....+++.++ ++.+|+.+ .++
T Consensus        12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~~   89 (178)
T 3hm2_A           12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AFD   89 (178)
T ss_dssp             HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GGG
T ss_pred             HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hhh
Confidence            34456667778888999999999999999999985 4689999999999999999999988887788 88888855 333


Q ss_pred             C--CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHH
Q 018194          188 D--NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITE  265 (359)
Q Consensus       188 ~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (359)
                      .  ++||+|++..++++    ..+++++.++|||||++++......                           +...+.+
T Consensus        90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~---------------------------~~~~~~~  138 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE---------------------------SEQMLWA  138 (178)
T ss_dssp             GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH---------------------------HHHHHHH
T ss_pred             ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc---------------------------cHHHHHH
Confidence            3  78999999998877    6789999999999999998643211                           2346778


Q ss_pred             HHHhCCCeEEEEE
Q 018194          266 IAKRVGFEVVKEK  278 (359)
Q Consensus       266 ~l~~aGF~~i~~~  278 (359)
                      ++++.|+++....
T Consensus       139 ~~~~~~~~~~~~~  151 (178)
T 3hm2_A          139 LRKQFGGTISSFA  151 (178)
T ss_dssp             HHHHHCCEEEEEE
T ss_pred             HHHHcCCeeEEEE
Confidence            8888998887654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.77  E-value=1.3e-17  Score=147.87  Aligned_cols=158  Identities=16%  Similarity=0.118  Sum_probs=114.3

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCC---ChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          109 LHEEMAVDLID-VKAGDRILDVGCGV---GGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       109 ~~~~~~~~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      .+.+.++..+. ..+..+|||||||+   |.++..+.+. ++.+|+++|+|+.|++.|+++...   .++++++++|+.+
T Consensus        63 ~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~  139 (274)
T 2qe6_A           63 KVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRD  139 (274)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCC
Confidence            33444444443 33457999999999   9887766653 678999999999999999998743   3579999999976


Q ss_pred             CC-----------CCCCccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc
Q 018194          184 MP-----------FEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER  250 (359)
Q Consensus       184 ~~-----------~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (359)
                      .+           ++..+||+|++..++||+++  +..+|++++++|||||+|++.++....  .   .........+..
T Consensus       140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~---~~~~~~~~~~~~  214 (274)
T 2qe6_A          140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--L---PAQQKLARITRE  214 (274)
T ss_dssp             HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--C---HHHHHHHHHHHH
T ss_pred             chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--h---HHHHHHHHHHHh
Confidence            31           23358999999999999987  899999999999999999998865421  1   111111111111


Q ss_pred             CCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          251 GDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      ......+++.+++.++|  .||++++
T Consensus       215 ~~~~~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          215 NLGEGWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             HHSCCCCBCHHHHHHTT--TTCEECT
T ss_pred             cCCCCccCCHHHHHHHh--CCCeEcc
Confidence            01112457899999999  5998765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.77  E-value=3.1e-18  Score=146.57  Aligned_cols=115  Identities=18%  Similarity=0.215  Sum_probs=99.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....+...+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....   .+++++++|+.+++ ++
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CC
Confidence            44455666677778899999999999999999986 469999999999999999987653   37999999999987 67


Q ss_pred             CccceEEecccccccCCH---HHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCHAPKL---EDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ++||+|++..+++|++++   ..+++++.++|||||.+++...
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            899999999999999987   5779999999999999998643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.77  E-value=7e-19  Score=152.83  Aligned_cols=107  Identities=21%  Similarity=0.303  Sum_probs=89.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEe-
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYS-  196 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~-  196 (359)
                      ..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+  .+++++++|+.++  ++++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            45788999999999999999987544599999999999999999887655  5799999999887  788899999999 


Q ss_pred             ccccc----ccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          197 IEATC----HAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       197 ~~~l~----~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      .+.+.    +..+...++++++++|||||++++.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            55441    122455789999999999999998653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=1.3e-17  Score=139.80  Aligned_cols=129  Identities=21%  Similarity=0.267  Sum_probs=109.3

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec-c
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI-E  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-~  198 (359)
                      +.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.      .+++++++|+.+.++++++||+|++. .
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~  116 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGN  116 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCc
Confidence            457889999999999999999986 679999999999999998875      25899999999988878899999998 6


Q ss_pred             cccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          199 ATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       199 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      +++|++  +...+++++.++|+|||.+++.....                         ..++..++.++++++||++++
T Consensus       117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~-------------------------~~~~~~~~~~~l~~~Gf~~~~  171 (195)
T 3cgg_A          117 VMGFLAEDGREPALANIHRALGADGRAVIGFGAG-------------------------RGWVFGDFLEVAERVGLELEN  171 (195)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT-------------------------SSCCHHHHHHHHHHHTEEEEE
T ss_pred             HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC-------------------------CCcCHHHHHHHHHHcCCEEee
Confidence            888874  56899999999999999999853211                         114678999999999999988


Q ss_pred             EEec
Q 018194          277 EKDL  280 (359)
Q Consensus       277 ~~~~  280 (359)
                      ....
T Consensus       172 ~~~~  175 (195)
T 3cgg_A          172 AFES  175 (195)
T ss_dssp             EESS
T ss_pred             eecc
Confidence            7543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.76  E-value=5.4e-18  Score=143.89  Aligned_cols=138  Identities=14%  Similarity=0.056  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+...  +.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....++.. +++.++|+.+.  .
T Consensus        48 ~~~~~~l~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--~  122 (205)
T 3grz_A           48 QLAMLGIERA--MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--V  122 (205)
T ss_dssp             HHHHHHHHHH--CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--C
T ss_pred             HHHHHHHHHh--ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--C
Confidence            3333444433  35788999999999999999988655699999999999999999999888764 99999999774  3


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      +++||+|++...+++   ...+++++.++|||||++++.++...                           +.+++.+++
T Consensus       123 ~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~---------------------------~~~~~~~~~  172 (205)
T 3grz_A          123 DGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL---------------------------QLPKIEQAL  172 (205)
T ss_dssp             CSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG---------------------------GHHHHHHHH
T ss_pred             CCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc---------------------------cHHHHHHHH
Confidence            589999999887765   47889999999999999998654332                           246888999


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      +++||++++....
T Consensus       173 ~~~Gf~~~~~~~~  185 (205)
T 3grz_A          173 AENSFQIDLKMRA  185 (205)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHcCCceEEeecc
Confidence            9999999987664

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.76  E-value=7.9e-18  Score=144.00  Aligned_cols=143  Identities=16%  Similarity=0.131  Sum_probs=108.7

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---PFEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~  190 (359)
                      ..++++||++|||+|||+|.++..+++.  +..+|+++|+|+.|++.+++++.+.   .|+..+.+|..+.   ++..++
T Consensus        71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCC
T ss_pred             hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccce
Confidence            3467899999999999999999999986  4579999999999999999887654   4799999998763   355688


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      +|+|++.  +.+..+...++.++.+.|||||++++..............                  ....+..+.|+++
T Consensus       148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~------------------~~~~~ev~~L~~~  207 (233)
T 4df3_A          148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPS------------------EVYKREIKTLMDG  207 (233)
T ss_dssp             EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCC------------------HHHHHHHHHHHHT
T ss_pred             EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChH------------------HHHHHHHHHHHHC
Confidence            9999864  3444578899999999999999999864332211110000                  0113455678999


Q ss_pred             CCeEEEEEecC
Q 018194          271 GFEVVKEKDLA  281 (359)
Q Consensus       271 GF~~i~~~~~~  281 (359)
                      ||++++..++.
T Consensus       208 GF~l~e~i~L~  218 (233)
T 4df3_A          208 GLEIKDVVHLD  218 (233)
T ss_dssp             TCCEEEEEECT
T ss_pred             CCEEEEEEccC
Confidence            99999987763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.76  E-value=2.1e-19  Score=156.05  Aligned_cols=105  Identities=24%  Similarity=0.338  Sum_probs=90.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEe--
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYS--  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~--  196 (359)
                      .+|.+|||||||+|..+..+++..+.+|++||+|+.+++.|+++....+  .++.++.+|+.+.  ++++++||.|+.  
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEee
Confidence            4788999999999999999998655799999999999999999987765  4688999998764  467889999874  


Q ss_pred             ---cccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          197 ---IEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       197 ---~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                         ...++|.+++..++++++|+|||||+|++.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence               5667788899999999999999999998743

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.76  E-value=4.8e-18  Score=141.75  Aligned_cols=143  Identities=11%  Similarity=0.089  Sum_probs=104.5

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEec
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAYSI  197 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~  197 (359)
                      .+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++ .++++++.|+..++ +.+++||+|+++
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            3567899999999999999999997 78999999999999999999998887 68999998887743 446889999887


Q ss_pred             c-cccc--------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          198 E-ATCH--------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       198 ~-~l~~--------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      . .+.+        ..+...+++++.++|||||++++..+......   .....                ...++.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~----------------~~~~~~~~l~  157 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGG---DMEKD----------------AVLEYVIGLD  157 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---------CHHHH----------------HHHHHHHHSC
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCC---HHHHH----------------HHHHHHHhCC
Confidence            3 2221        12456889999999999999998765432110   00100                1134445556


Q ss_pred             hCCCeEEEEEecCC
Q 018194          269 RVGFEVVKEKDLAK  282 (359)
Q Consensus       269 ~aGF~~i~~~~~~~  282 (359)
                      ..+|.+.....+..
T Consensus       158 ~~~~~~~~~~~~~~  171 (185)
T 3mti_A          158 QRVFTAMLYQPLNQ  171 (185)
T ss_dssp             TTTEEEEEEEESSC
T ss_pred             CceEEEEEehhhcc
Confidence            67899888776643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.75  E-value=6.9e-18  Score=156.48  Aligned_cols=155  Identities=14%  Similarity=0.187  Sum_probs=117.9

Q ss_pred             HHHHHhcC-CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLID-VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..++..++ ..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++.       ++++++.+|+.+ +++. 
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~-  267 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVPQ-  267 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC-
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCCC-
Confidence            34555554 667889999999999999999985 5689999999 9999877541       369999999987 6654 


Q ss_pred             ccceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEEeeeCcccccCc----hHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN----KEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                       ||+|++..++||+++..  .+|++++++|||||++++.++..........    .....+......+   ...++.+++
T Consensus       268 -~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~t~~e~  343 (372)
T 1fp1_D          268 -GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG---GRERTEKQY  343 (372)
T ss_dssp             -EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS---CCCEEHHHH
T ss_pred             -CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccC---CccCCHHHH
Confidence             99999999999999877  9999999999999999999877643321110    1111111111111   134588999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|+++||++++....
T Consensus       344 ~~ll~~aGf~~~~~~~~  360 (372)
T 1fp1_D          344 EKLSKLSGFSKFQVACR  360 (372)
T ss_dssp             HHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHCCCceEEEEEc
Confidence            99999999999988764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.75  E-value=2.6e-17  Score=143.30  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=108.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceE
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGA  194 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v  194 (359)
                      .+.++.+|||||||+|..+..++. .++.+|+|+|+|+.|++.++++....++. +++++++|+.+++++   +++||+|
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEE
Confidence            335778999999999999999986 36789999999999999999999888875 699999999887653   5789999


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                      ++..    +.++..+++++.++|||||++++......       ..                  ...++.+.++++||++
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~-------~~------------------~~~~~~~~l~~~g~~~  196 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALKAASA-------EE------------------ELNAGKKAITTLGGEL  196 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C-------HH------------------HHHHHHHHHHHTTEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc-------hH------------------HHHHHHHHHHHcCCeE
Confidence            9976    46789999999999999999988521100       00                  1246778899999999


Q ss_pred             EEEEecC
Q 018194          275 VKEKDLA  281 (359)
Q Consensus       275 i~~~~~~  281 (359)
                      ++...+.
T Consensus       197 ~~~~~~~  203 (240)
T 1xdz_A          197 ENIHSFK  203 (240)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            8877654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.75  E-value=8.8e-18  Score=146.36  Aligned_cols=164  Identities=17%  Similarity=0.151  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhcCC-CCCCEEEEECCCC--ChHHHHHHh--hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194          106 ATRLHEEMAVDLIDV-KAGDRILDVGCGV--GGPMRAIAA--HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN  180 (359)
Q Consensus       106 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d  180 (359)
                      ..+.+...+...+.. ....+|||||||+  +..+..+++  .++++|+++|.|+.|++.|+++....+ ..+++|+++|
T Consensus        61 ~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD  139 (277)
T 3giw_A           61 ANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEAD  139 (277)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECC
T ss_pred             HHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEec
Confidence            344455555555542 2346999999997  445566655  378999999999999999999876432 2479999999


Q ss_pred             CCCCC----CC--CCccc-----eEEecccccccCC---HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHh
Q 018194          181 FLKMP----FE--DNHFD-----GAYSIEATCHAPK---LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ  246 (359)
Q Consensus       181 ~~~~~----~~--~~~fD-----~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  246 (359)
                      +.+.+    .+  .+.||     .|+++.+|||+++   +..+++++.+.|+|||+|++.+.....  .+  .....+..
T Consensus       140 ~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~--~p--~~~~~~~~  215 (277)
T 3giw_A          140 MLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF--AP--QEVGRVAR  215 (277)
T ss_dssp             TTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT--SH--HHHHHHHH
T ss_pred             ccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC--CH--HHHHHHHH
Confidence            98852    01  24566     5889999999987   578999999999999999998765431  11  11222222


Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          247 GIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      .+........+++.+++.++|.  ||++++
T Consensus       216 ~~~~~g~p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          216 EYAARNMPMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             HHHHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred             HHHhcCCCCccCCHHHHHHHhC--CCcccC
Confidence            2222222235789999999994  999764

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.75  E-value=1e-17  Score=152.86  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHH-------HHcCC-CCCe
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHN-------KKAGL-DSLC  174 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~-------~~~~~-~~~i  174 (359)
                      .+........++..+.+.++.+|||||||+|.++..++...++ +|+|||+|+.+++.|++..       ...++ ..+|
T Consensus       155 GEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rV  234 (438)
T 3uwp_A          155 GETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY  234 (438)
T ss_dssp             GGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEE
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence            3444555666778888999999999999999999999976565 5999999999999998754       34455 3689


Q ss_pred             EEEEcCCCCCCCCC--CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCccc
Q 018194          175 EVVCGNFLKMPFED--NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKY  234 (359)
Q Consensus       175 ~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  234 (359)
                      +|+++|+.++++++  ..||+|+++..+ +.++....|.+++++|||||+|++.+......+
T Consensus       235 efi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          235 TLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             EEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             EEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            99999999987643  479999997765 457899999999999999999999876665544

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.75  E-value=1.3e-17  Score=143.89  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCC-CCccceEEecc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMPFE-DNHFDGAYSIE  198 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-~~~fD~v~~~~  198 (359)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++      .++++++++|+ ..+|++ +++||+|++. 
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR-  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence            56889999999999999999997 68999999999999999887      24699999999 567777 8899999987 


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                           .++..+++++.++|||||+++..  .                          ...+..++.+.++++||+++...
T Consensus       119 -----~~~~~~l~~~~~~LkpgG~l~~~--~--------------------------~~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          119 -----RGPTSVILRLPELAAPDAHFLYV--G--------------------------PRLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             -----SCCSGGGGGHHHHEEEEEEEEEE--E--------------------------SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred             -----CCHHHHHHHHHHHcCCCcEEEEe--C--------------------------CcCCHHHHHHHHHHCCCeEEEEE
Confidence                 47788999999999999999811  0                          11234588999999999998876


Q ss_pred             ec
Q 018194          279 DL  280 (359)
Q Consensus       279 ~~  280 (359)
                      ..
T Consensus       166 ~~  167 (226)
T 3m33_A          166 HV  167 (226)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=142.28  Aligned_cols=114  Identities=23%  Similarity=0.293  Sum_probs=97.8

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..++.+|||||||+|.++..++    .+|+|+|+|+.                ++.+.++|+.++++++++||+|++..+
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~  124 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLS  124 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred             cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence            4577899999999999988773    69999999987                368899999998888889999999999


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                      +++ +++..+++++.++|+|||++++.++...                         ..+.+++.++|+++||+++....
T Consensus       125 l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~-------------------------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          125 LMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR-------------------------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             CCS-SCHHHHHHHHHHHEEEEEEEEEEECGGG-------------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             ccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCC-------------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence            975 8999999999999999999999764321                         12678999999999999988654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.74  E-value=2.1e-16  Score=136.52  Aligned_cols=133  Identities=19%  Similarity=0.190  Sum_probs=105.5

Q ss_pred             CCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          119 DVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       119 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      .+.++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|+++....++  +++++++|+..+ ++++++||+|++
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEE
Confidence            45688999999999 99999999986578999999999999999999998876  799999997543 455689999999


Q ss_pred             cccccccCC-------------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCC
Q 018194          197 IEATCHAPK-------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGL  257 (359)
Q Consensus       197 ~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (359)
                      +..+++.++                   ...+++++.++|||||++++......                          
T Consensus       130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------------  183 (230)
T 3evz_A          130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--------------------------  183 (230)
T ss_dssp             CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------------------------
T ss_pred             CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------------------------
Confidence            866654432                   47899999999999999998521100                          


Q ss_pred             CCHHHHHHHHHhCCCeEEEEEe
Q 018194          258 RSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       258 ~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                      ....++.++++++||++.....
T Consensus       184 ~~~~~~~~~l~~~g~~~~~~~~  205 (230)
T 3evz_A          184 KLLNVIKERGIKLGYSVKDIKF  205 (230)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCceEEEEe
Confidence            0235788899999998766543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.74  E-value=5.5e-18  Score=145.25  Aligned_cols=152  Identities=14%  Similarity=0.173  Sum_probs=107.4

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHH----HHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLH----NKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~----~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.+.+.    ....++ ++++++++|+.++++++++
T Consensus        21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           21 EQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE
T ss_pred             HHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC
Confidence            3444668899999999999999999985 478999999999988864332    223444 3799999999999887766


Q ss_pred             cceEEecc---cc--cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCC---CCHHH
Q 018194          191 FDGAYSIE---AT--CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGL---RSYAE  262 (359)
Q Consensus       191 fD~v~~~~---~l--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  262 (359)
                       |.|+...   .+  +|++++..+++++.++|||||++++.... .. +......       .   ...+..   +..+.
T Consensus       100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~-~~~~~~~-------~---~~~~~~~~~~~~~~  166 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL-HA-WRPSVPE-------V---GEHPEPTPDSADEW  166 (218)
T ss_dssp             -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG-GG-BTTBCGG-------G---TTCCCCCHHHHHHH
T ss_pred             -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc-cc-ccccccc-------c---ccCCccchHHHHHH
Confidence             7766333   22  26778899999999999999999984211 11 1111110       0   011111   12345


Q ss_pred             HHHHHHhCCCeEEEEEecC
Q 018194          263 ITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~~~  281 (359)
                      +.++++++||++.+.+.+.
T Consensus       167 l~~~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          167 LAPRYAEAGWKLADCRYLE  185 (218)
T ss_dssp             HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHcCCCceeeeccc
Confidence            7889999999999988764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.74  E-value=5.4e-17  Score=140.28  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----CCCCCC
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK----MPFEDN  189 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~  189 (359)
                      +..+.+.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...   .++.++.+|+.+    .+++ +
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-C
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-c
Confidence            445567788999999999999999999863 479999999999999999886543   579999999988    6665 7


Q ss_pred             ccceEEecccccccCCH---HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          190 HFDGAYSIEATCHAPKL---EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      +||+|+     ++++++   ..+++++.++|||||++++. +..... ....... .+              ..+++. +
T Consensus       143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~-~~~~~~~-~~--------------~~~~l~-~  199 (230)
T 1fbn_A          143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSI-DVTKDPK-EI--------------FKEQKE-I  199 (230)
T ss_dssp             CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT-CSSSCHH-HH--------------HHHHHH-H
T ss_pred             cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCC-CCCCCHH-Hh--------------hHHHHH-H
Confidence            899998     344555   77899999999999999986 322111 1100000 10              125677 8


Q ss_pred             HHhCCCeEEEEEec
Q 018194          267 AKRVGFEVVKEKDL  280 (359)
Q Consensus       267 l~~aGF~~i~~~~~  280 (359)
                      |+++||++++..++
T Consensus       200 l~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          200 LEAGGFKIVDEVDI  213 (230)
T ss_dssp             HHHHTEEEEEEEEC
T ss_pred             HHHCCCEEEEEEcc
Confidence            99999999988776

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.74  E-value=3.8e-17  Score=143.84  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=114.3

Q ss_pred             HHHHhcCCC-CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCC
Q 018194          113 MAVDLIDVK-AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDN  189 (359)
Q Consensus       113 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~  189 (359)
                      .+...+... ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.++++++++|+.+.+  ++.+
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~  118 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKE  118 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccC
Confidence            345566777 8899999999999999999987556999999999999999999999998888999999998865  4578


Q ss_pred             ccceEEeccccccc--------------------CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh
Q 018194          190 HFDGAYSIEATCHA--------------------PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE  249 (359)
Q Consensus       190 ~fD~v~~~~~l~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (359)
                      +||+|+++-.+...                    .+...+++.+.++|||||+++++.   .                  
T Consensus       119 ~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~------------------  177 (259)
T 3lpm_A          119 RADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---R------------------  177 (259)
T ss_dssp             CEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---C------------------
T ss_pred             CccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---c------------------
Confidence            99999997544322                    134679999999999999999841   0                  


Q ss_pred             cCCCCCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          250 RGDALPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                             .....++.+.+++.||.......+.
T Consensus       178 -------~~~~~~~~~~l~~~~~~~~~~~~v~  202 (259)
T 3lpm_A          178 -------PERLLDIIDIMRKYRLEPKRIQFVH  202 (259)
T ss_dssp             -------TTTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------HHHHHHHHHHHHHCCCceEEEEEee
Confidence                   1134578888999999998877653

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.74  E-value=2.5e-17  Score=149.16  Aligned_cols=160  Identities=17%  Similarity=0.188  Sum_probs=113.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCCC----CC--C
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG------LDSLCEVVCGNFLKMP----FE--D  188 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~~----~~--~  188 (359)
                      .++.+|||+|||+|.++..+++..+.+|+|+|+|+.|++.++++....+      ...+++++++|+.+.+    ++  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3678999999999999999988666799999999999999999876542      2246999999999875    53  4


Q ss_pred             CccceEEeccccccc-C---CHHHHHHHHHhccCCCCEEEEEEeeeCcc-----------cccC-----ch---HHHHHH
Q 018194          189 NHFDGAYSIEATCHA-P---KLEDVYAEVFRVLKPGSLYVSYEWVTTDK-----------YEAE-----NK---EHVDII  245 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------~~~~-----~~---~~~~~~  245 (359)
                      ++||+|++..+++|+ .   ++..+++++.++|||||.+++..+.....           +...     ..   ....+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  192 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG  192 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence            589999999999987 3   46799999999999999999875432100           0000     00   000000


Q ss_pred             hh--hh--cC-CCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          246 QG--IE--RG-DALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       246 ~~--~~--~~-~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ..  +.  .. .......+.+++.+++++.||+++....+
T Consensus       193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence            00  00  00 00011357789999999999999998765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.74  E-value=1.1e-17  Score=141.07  Aligned_cols=145  Identities=15%  Similarity=0.176  Sum_probs=109.7

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAY  195 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~  195 (359)
                      .+.++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+++....++..+++++++|+.+++ +.+++||+|+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            4567899999999999999999986  447999999999999999999999887678999999998875 5568999999


Q ss_pred             ecccccc---------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          196 SIEATCH---------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       196 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      +...+..         ..+...+++++.++|||||++++..+......   ......                ..++.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~----------------~~~~~~~  159 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTG---FEEKEK----------------VLEFLKG  159 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTB---SHHHHH----------------HHHHHTT
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCc---HHHHHH----------------HHHHHHh
Confidence            8875411         11456899999999999999998765432111   111110                1233334


Q ss_pred             HHhCCCeEEEEEecCC
Q 018194          267 AKRVGFEVVKEKDLAK  282 (359)
Q Consensus       267 l~~aGF~~i~~~~~~~  282 (359)
                      +...+|.+.....+..
T Consensus       160 l~~~~~~v~~~~~~~~  175 (197)
T 3eey_A          160 VDQKKFIVQRTDFINQ  175 (197)
T ss_dssp             SCTTTEEEEEEEETTC
T ss_pred             CCCCcEEEEEEEeccC
Confidence            4567899988877654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.73  E-value=7.6e-17  Score=137.78  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=105.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~  197 (359)
                      .++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ .+++++++|+.+++  +++++||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            35779999999999999999985 568999999999999999999988887 58999999999876  677899999998


Q ss_pred             ccccccC--------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          198 EATCHAP--------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       198 ~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      ....+..        ....+++++.++|||||.+++....         ..                  ....+.+.+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~------------------~~~~~~~~~~~  171 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN---------RG------------------LFEYSLVSFSQ  171 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC---------HH------------------HHHHHHHHHHH
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC---------HH------------------HHHHHHHHHHH
Confidence            7644322        2368999999999999999884210         00                  01466778889


Q ss_pred             CCCeEEEEE
Q 018194          270 VGFEVVKEK  278 (359)
Q Consensus       270 aGF~~i~~~  278 (359)
                      +||+.+...
T Consensus       172 ~g~~~~~~~  180 (214)
T 1yzh_A          172 YGMKLNGVW  180 (214)
T ss_dssp             HTCEEEEEE
T ss_pred             CCCeeeecc
Confidence            999988765

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.73  E-value=9.6e-17  Score=133.20  Aligned_cols=134  Identities=18%  Similarity=0.253  Sum_probs=111.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+...+...++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....++ .+++++++|+.+ ++++
T Consensus        22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~~~   98 (183)
T 2yxd_A           22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VLDK   98 (183)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HGGG
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cccC
Confidence            3445566677778889999999999999999998 678999999999999999999988876 479999999987 6666


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++..+    .+...+++++.++  |||.+++......                           ...++.+.|+
T Consensus        99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~---------------------------~~~~~~~~l~  145 (183)
T 2yxd_A           99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE---------------------------NAAKIINEFE  145 (183)
T ss_dssp             CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH---------------------------HHHHHHHHHH
T ss_pred             CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc---------------------------cHHHHHHHHH
Confidence            89999999887    6788999999998  9999998642211                           1357888999


Q ss_pred             hCCCeEEEEE
Q 018194          269 RVGFEVVKEK  278 (359)
Q Consensus       269 ~aGF~~i~~~  278 (359)
                      ++||.+...+
T Consensus       146 ~~g~~~~~~~  155 (183)
T 2yxd_A          146 SRGYNVDAVN  155 (183)
T ss_dssp             HTTCEEEEEE
T ss_pred             HcCCeEEEEE
Confidence            9999876553

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.73  E-value=1.6e-17  Score=145.84  Aligned_cols=165  Identities=13%  Similarity=0.083  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhcCC--CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          106 ATRLHEEMAVDLIDV--KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       106 ~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      ....+...++..+..  .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.|++.|++++...++.++++++++|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  126 (254)
T 2h00_A           47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  126 (254)
T ss_dssp             HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence            344444545544432  25789999999999999998874 568999999999999999999998888777999999986


Q ss_pred             CC---CCC---CCccceEEecccccccC---------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          183 KM---PFE---DNHFDGAYSIEATCHAP---------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       183 ~~---~~~---~~~fD~v~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      +.   +++   +++||+|+++...++..               ....++.++.++|||||.+.+++....        ..
T Consensus       127 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~--------~~  198 (254)
T 2h00_A          127 TLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH--------DS  198 (254)
T ss_dssp             CSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH--------HH
T ss_pred             hhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHH--------HH
Confidence            62   344   26899999986554332               122467889999999999876532110        00


Q ss_pred             HHHHhhhhcCCC----CCCCCCHHHHHHHHHhCCCeEEEEEecC
Q 018194          242 VDIIQGIERGDA----LPGLRSYAEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       242 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ...   ......    ........++.++|+++||+.++...+.
T Consensus       199 ~~~---l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          199 LQL---KKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             HHH---GGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             Hhc---ccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence            111   111110    1122345789999999999998877664

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.73  E-value=2.8e-17  Score=151.24  Aligned_cols=150  Identities=13%  Similarity=0.079  Sum_probs=113.1

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      ...++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++.       ++++++.+|+.+ +++  .||+|++.
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCC--CccEEEee
Confidence            3456789999999999999999985 6789999999 9999887641       359999999977 555  39999999


Q ss_pred             ccccccCCHH--HHHHHHHhccCC---CCEEEEEEeeeCcccccC-chHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          198 EATCHAPKLE--DVYAEVFRVLKP---GSLYVSYEWVTTDKYEAE-NKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       198 ~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      .++||+++..  .+|++++++|||   ||++++.++......... ................ ...++.+++.++|+++|
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~aG  332 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN-GKERNEEEWKKLFIEAG  332 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTT
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhcc-CCCCCHHHHHHHHHHCC
Confidence            9999999877  999999999999   999999987764322110 0011111111000011 24468899999999999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |++++....
T Consensus       333 f~~~~~~~~  341 (352)
T 1fp2_A          333 FQHYKISPL  341 (352)
T ss_dssp             CCEEEEEEE
T ss_pred             CCeeEEEec
Confidence            999987664

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.72  E-value=2.1e-17  Score=138.38  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=93.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIE  198 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~  198 (359)
                      .++.+|||+|||+|.++..++.....+|+|+|+|+.+++.+++++...++ ++++++++|+.+.+  +++++||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence            46789999999999999988876556899999999999999999998887 68999999998753  4468999999998


Q ss_pred             ccccc-CCHHHHHHHHHh--ccCCCCEEEEEE
Q 018194          199 ATCHA-PKLEDVYAEVFR--VLKPGSLYVSYE  227 (359)
Q Consensus       199 ~l~~~-~~~~~~l~~~~~--~LkpgG~l~~~~  227 (359)
                      .+++. ++...+++++.+  +|||||.+++..
T Consensus       122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~  153 (189)
T 3p9n_A          122 PYNVDSADVDAILAALGTNGWTREGTVAVVER  153 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred             CCCcchhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence            87775 678899999999  999999999854

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.72  E-value=7.5e-17  Score=132.67  Aligned_cols=119  Identities=12%  Similarity=0.066  Sum_probs=98.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||+|||+|.++..+++..  +|+|+|+|+.|++.          ..+++++++|+.+ ++++++||+|+++..+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~   88 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPY   88 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCC
Confidence            456799999999999999999864  99999999999987          2468999999988 5666899999999888


Q ss_pred             cccCCH---------HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          201 CHAPKL---------EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       201 ~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      ++.++.         ..+++++.+.| |||++++.+...                           ...+++.++++++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------------------~~~~~l~~~l~~~g  140 (170)
T 3q87_B           89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------------------NRPKEVLARLEERG  140 (170)
T ss_dssp             BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---------------------------GCHHHHHHHHHHTT
T ss_pred             ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---------------------------CCHHHHHHHHHHCC
Confidence            765543         67889999999 999999865321                           13468899999999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |+.+.....
T Consensus       141 f~~~~~~~~  149 (170)
T 3q87_B          141 YGTRILKVR  149 (170)
T ss_dssp             CEEEEEEEE
T ss_pred             CcEEEEEee
Confidence            999887654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.71  E-value=3.9e-17  Score=145.09  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..++..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.++++.... +. +++++.++|+.+ ++++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~  177 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISD  177 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCS
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcC
Confidence            45677778889999999999999999999985  4689999999999999999998876 63 479999999988 5667


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++     +++++..+++++.++|||||++++.+....                           ...++.+.|+
T Consensus       178 ~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---------------------------~~~~~~~~l~  225 (275)
T 1yb2_A          178 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD---------------------------QSEKTVLSLS  225 (275)
T ss_dssp             CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH---------------------------HHHHHHHHSG
T ss_pred             CCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH---------------------------HHHHHHHHHH
Confidence            88999998     567888999999999999999998642110                           1246778888


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||..++....
T Consensus       226 ~~Gf~~~~~~~~  237 (275)
T 1yb2_A          226 ASGMHHLETVEL  237 (275)
T ss_dssp             GGTEEEEEEEEE
T ss_pred             HCCCeEEEEEEE
Confidence            999999887664

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.71  E-value=1.2e-16  Score=133.78  Aligned_cols=116  Identities=22%  Similarity=0.223  Sum_probs=100.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~  189 (359)
                      .+.++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++.. ++++..+|+.+ +++++
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~  118 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDR  118 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTS
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccC
Confidence            355666777778899999999999999999987 7899999999999999999998877653 49999999987 44567


Q ss_pred             ccceEEecccccc-cCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          190 HFDGAYSIEATCH-APKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       190 ~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +||+|++...+++ ..+...+++++.++|+|||.+++..+
T Consensus       119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            8999999988876 35678999999999999999998654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.71  E-value=8.4e-17  Score=134.56  Aligned_cols=134  Identities=21%  Similarity=0.294  Sum_probs=109.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED-  188 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-  188 (359)
                      ....++..+...++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++....++..++++.++|+.+ +++. 
T Consensus        21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~   98 (192)
T 1l3i_A           21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI   98 (192)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC
Confidence            44556666778889999999999999999999865 79999999999999999999888876689999999876 3333 


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++..+++   +...+++++.++|+|||.+++......                           +..++.+.++
T Consensus        99 ~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~---------------------------~~~~~~~~l~  148 (192)
T 1l3i_A           99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE---------------------------TKFEAMECLR  148 (192)
T ss_dssp             CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH---------------------------HHHHHHHHHH
T ss_pred             CCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc---------------------------hHHHHHHHHH
Confidence            5899999987764   568999999999999999998643211                           2357888999


Q ss_pred             hCCCeEE
Q 018194          269 RVGFEVV  275 (359)
Q Consensus       269 ~aGF~~i  275 (359)
                      +.||.+.
T Consensus       149 ~~g~~~~  155 (192)
T 1l3i_A          149 DLGFDVN  155 (192)
T ss_dssp             HTTCCCE
T ss_pred             HCCCceE
Confidence            9999443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.71  E-value=6.6e-17  Score=141.91  Aligned_cols=137  Identities=22%  Similarity=0.314  Sum_probs=115.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...++..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.|+++++..++++++++.++|+.+. +++
T Consensus        82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  160 (255)
T 3mb5_A           82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEE  160 (255)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCC
T ss_pred             HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCC
Confidence            346777788889999999999999999999986  36899999999999999999999988877799999999864 667


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++     +.+++..+++++.++|||||++++......                           ...++.+.|+
T Consensus       161 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------------------------~~~~~~~~l~  208 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN---------------------------QVMRLHEKLR  208 (255)
T ss_dssp             CSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH---------------------------HHHHHHHHHH
T ss_pred             CCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH---------------------------HHHHHHHHHH
Confidence            88999998     457888999999999999999998532110                           1357788899


Q ss_pred             hCC--CeEEEEEec
Q 018194          269 RVG--FEVVKEKDL  280 (359)
Q Consensus       269 ~aG--F~~i~~~~~  280 (359)
                      ++|  |..++....
T Consensus       209 ~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          209 EFKDYFMKPRTINV  222 (255)
T ss_dssp             HTGGGBSCCEEECC
T ss_pred             HcCCCccccEEEEE
Confidence            999  998887665

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.71  E-value=6.8e-17  Score=141.12  Aligned_cols=133  Identities=17%  Similarity=0.136  Sum_probs=107.8

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---DNHFDGAY  195 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~v~  195 (359)
                      ..++.+|||||||+|..+..++.. ++.+|+++|+|+.+++.++++....++. +++++++|+++++..   .++||+|+
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEE
Confidence            456889999999999999999985 6789999999999999999999998875 599999999886542   47899999


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      ++.+    .+...+++.+.++|||||++++......       .  .                ...++...++..||.++
T Consensus       157 s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------~--~----------------e~~~~~~~l~~~G~~~~  207 (249)
T 3g89_A          157 ARAV----APLCVLSELLLPFLEVGGAAVAMKGPRV-------E--E----------------ELAPLPPALERLGGRLG  207 (249)
T ss_dssp             EESS----CCHHHHHHHHGGGEEEEEEEEEEECSCC-------H--H----------------HHTTHHHHHHHHTEEEE
T ss_pred             ECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCc-------H--H----------------HHHHHHHHHHHcCCeEE
Confidence            9753    5788999999999999999987531100       0  0                01356677888999999


Q ss_pred             EEEecCC
Q 018194          276 KEKDLAK  282 (359)
Q Consensus       276 ~~~~~~~  282 (359)
                      +...+..
T Consensus       208 ~~~~~~~  214 (249)
T 3g89_A          208 EVLALQL  214 (249)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeeC
Confidence            8887743

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.71  E-value=1.5e-16  Score=141.36  Aligned_cols=141  Identities=16%  Similarity=0.224  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~  185 (359)
                      .+...+.++..+. .++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....+++ +++++++|+.+. 
T Consensus        95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-  171 (276)
T 2b3t_A           95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-  171 (276)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-
T ss_pred             HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-
Confidence            3445556666665 56789999999999999999964 5689999999999999999999888875 799999999873 


Q ss_pred             CCCCccceEEecc-------------cccccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH
Q 018194          186 FEDNHFDGAYSIE-------------ATCHAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE  240 (359)
Q Consensus       186 ~~~~~fD~v~~~~-------------~l~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~  240 (359)
                      ++.++||+|+++.             +++|.|            +...+++++.++|||||++++..             
T Consensus       172 ~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~-------------  238 (276)
T 2b3t_A          172 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-------------  238 (276)
T ss_dssp             GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-------------
T ss_pred             cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-------------
Confidence            4467899999983             333332            35789999999999999998741             


Q ss_pred             HHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          241 HVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                                     .....+++.++++++||+.++..
T Consensus       239 ---------------~~~~~~~~~~~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          239 ---------------GWQQGEAVRQAFILAGYHDVETC  261 (276)
T ss_dssp             ---------------CSSCHHHHHHHHHHTTCTTCCEE
T ss_pred             ---------------CchHHHHHHHHHHHCCCcEEEEE
Confidence                           11245789999999999876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.71  E-value=1.1e-16  Score=140.77  Aligned_cols=136  Identities=20%  Similarity=0.247  Sum_probs=114.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA-GLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..++..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.++++.... + ..++++.++|+.+.++++
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence            45677778889999999999999999999986  3679999999999999999998877 6 468999999999887777


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|++     +.+++..+++++.++|+|||++++......                           ...++.+.|+
T Consensus       165 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------------------------~~~~~~~~l~  212 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT---------------------------QVLELVRAAE  212 (258)
T ss_dssp             TCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH---------------------------HHHHHHHHHT
T ss_pred             CCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH---------------------------HHHHHHHHHH
Confidence            89999998     357888999999999999999998642110                           1246777888


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||..++..+.
T Consensus       213 ~~gf~~~~~~~~  224 (258)
T 2pwy_A          213 AHPFRLERVLEV  224 (258)
T ss_dssp             TTTEEEEEEEEE
T ss_pred             HCCCceEEEEEe
Confidence            999999887664

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.71  E-value=9.6e-17  Score=146.66  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .+.+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++.+..++.++++++++|+.++++++
T Consensus        51 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC
Confidence            34456666666778899999999999999999987445999999997 99999999999888789999999999988888


Q ss_pred             CccceEEecc---cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          189 NHFDGAYSIE---ATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       189 ~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++||+|++..   .+.+..++..++.++.++|||||.++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            8999999876   455556788999999999999999873

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.71  E-value=6.7e-17  Score=141.58  Aligned_cols=111  Identities=27%  Similarity=0.448  Sum_probs=92.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..++......++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+.  +++++++|+.+++++ ++|
T Consensus        31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~f  106 (252)
T 1wzn_A           31 EEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEF  106 (252)
T ss_dssp             HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCE
T ss_pred             HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccC-CCc
Confidence            33444455567789999999999999999986 67999999999999999999887664  689999999988765 689


Q ss_pred             ceEEecc-cccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          192 DGAYSIE-ATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       192 D~v~~~~-~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+|++.. .+++.+  +...+++++.++|||||.+++.
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            9999874 344443  5789999999999999999874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.70  E-value=1.3e-16  Score=136.13  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=102.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIE  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~  198 (359)
                      ++.+|||||||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ .|++++++|+.+++  +++++||.|++.+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            5679999999999999999985 678999999999999999999988876 47999999998865  6778999998876


Q ss_pred             cccccCC--------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          199 ATCHAPK--------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       199 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ...+...        ...+++++.++|||||.+++...         ....                  ...+.+.++++
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td---------~~~~------------------~~~~~~~~~~~  169 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD---------NRGL------------------FEYSLKSFSEY  169 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES---------CHHH------------------HHHHHHHHHHH
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC---------CHHH------------------HHHHHHHHHHC
Confidence            5433221        36899999999999999998420         0000                  13556778888


Q ss_pred             CCeEEEE
Q 018194          271 GFEVVKE  277 (359)
Q Consensus       271 GF~~i~~  277 (359)
                      ||.....
T Consensus       170 g~~~~~~  176 (213)
T 2fca_A          170 GLLLTYV  176 (213)
T ss_dssp             TCEEEEE
T ss_pred             CCccccc
Confidence            9987764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.70  E-value=3.5e-17  Score=140.78  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=99.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCC-HHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITIN-EYQVNRA---RLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v  194 (359)
                      .++.+|||||||+|.++..+++ .++.+|+|+|+| +.|++.|   +++....+++ ++.+.++|+.++|.. .+.+|.|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence            4678999999999999999986 467899999999 7777776   7777776764 799999999988521 1345555


Q ss_pred             Eecccccc-----cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          195 YSIEATCH-----APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       195 ~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      ++++...+     ..+...++++++++|||||++++....... +...    ........  ...+.+...+++.+++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~----~~~~~~~~--~~~~~~~~~~el~~~l~~  174 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEA----EIKKRGLP--LLSKAYFLSEQYKAELSN  174 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------------CCHHHHHSHHHHHHHHH
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhc----hhhhcCCC--CCChhhcchHHHHHHHHH
Confidence            54432211     123467899999999999999984322111 1100    00000000  000001111248999999


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||+++..+.+.
T Consensus       175 aGf~v~~~~~~~  186 (225)
T 3p2e_A          175 SGFRIDDVKELD  186 (225)
T ss_dssp             HTCEEEEEEEEC
T ss_pred             cCCCeeeeeecC
Confidence            999999988774

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.70  E-value=1.4e-16  Score=135.62  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=98.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....+...+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+++ ++++..+|+.+...+.
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~  141 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQAR  141 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccC
Confidence            34556677788889999999999999999999987 689999999999999999999988875 7999999998866567


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++||+|++..+++|+++      ++.++|||||++++..
T Consensus       142 ~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPV  174 (210)
T ss_dssp             CCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEE
T ss_pred             CCccEEEEccchhhhhH------HHHHhcccCcEEEEEE
Confidence            89999999999999885      6899999999999854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.70  E-value=4.7e-16  Score=152.07  Aligned_cols=117  Identities=17%  Similarity=0.284  Sum_probs=98.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc------CCCCCeEEEEcC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKA------GLDSLCEVVCGN  180 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~------~~~~~i~~~~~d  180 (359)
                      ...+.+++.+...++.+|||||||+|.++..+++..+  .+|+|+|+|+.|++.|+++....      ++ .+++++++|
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGD  786 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGS  786 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESC
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECc
Confidence            3444555555555789999999999999999998642  79999999999999999876542      33 479999999


Q ss_pred             CCCCCCCCCccceEEecccccccCCHH--HHHHHHHhccCCCCEEEEEE
Q 018194          181 FLKMPFEDNHFDGAYSIEATCHAPKLE--DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       181 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.++++++++||+|++..+++|+++..  .+++++.++|||| .+++..
T Consensus       787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999998889999999999999998755  6999999999999 776654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.70  E-value=2.5e-16  Score=133.69  Aligned_cols=99  Identities=21%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.++++....++. ++++.++|+.+.+ +.++||+|+++.  
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~D~i~~~~--  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRA--  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSC--
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-ccCCcCEEEEec--
Confidence            4789999999999999999985 5689999999999999999999888775 4999999998865 457899999864  


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        +.++..+++++.++|+|||++++.
T Consensus       141 --~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          141 --FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             --SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             --cCCHHHHHHHHHHhcCCCcEEEEE
Confidence              357889999999999999999985

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.69  E-value=1e-16  Score=147.00  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=96.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+.....+.++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|+++....++.++++++++|+.++++++++|
T Consensus        56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  134 (349)
T 3q7e_A           56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKV  134 (349)
T ss_dssp             HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCE
T ss_pred             HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCce
Confidence            33444334457889999999999999999997445999999994 99999999999998888999999999998888999


Q ss_pred             ceEEecccc---cccCCHHHHHHHHHhccCCCCEEEE
Q 018194          192 DGAYSIEAT---CHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       192 D~v~~~~~l---~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      |+|++..+.   .+.+++..+++++.++|||||+++.
T Consensus       135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          135 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            999997653   3446899999999999999999874

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.69  E-value=1.8e-16  Score=146.83  Aligned_cols=118  Identities=20%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+.+.+.......++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++....++.++++++++|+.+++++
T Consensus        49 ~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  127 (376)
T 3r0q_C           49 DAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP  127 (376)
T ss_dssp             HHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS
T ss_pred             HHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC
Confidence            44456666667778899999999999999999998743499999999 99999999999999888899999999998876


Q ss_pred             CCccceEEeccccccc---CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHA---PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       ++||+|++..+.+++   .++..+++++.++|||||.+++.+
T Consensus       128 -~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          128 -EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             -SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             -CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence             899999996655544   468899999999999999998754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.69  E-value=9.9e-17  Score=136.76  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=94.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+.+...+  .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++...   ..++++.++|+.++++++++
T Consensus        33 ~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~  107 (215)
T 2pxx_A           33 RALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSAS  107 (215)
T ss_dssp             HHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSC
T ss_pred             HHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCc
Confidence            34444443  57789999999999999999986334999999999999999988753   24799999999998888889


Q ss_pred             cceEEecccccccC---------------CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          191 FDGAYSIEATCHAP---------------KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       191 fD~v~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ||+|++..+++++.               +...+++++.++|||||++++.++
T Consensus       108 fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          108 FDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            99999988886654               568999999999999999998754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.69  E-value=3.7e-16  Score=138.86  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=108.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.++++++++|+.+.+. .++||+|++...
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence            3568899999999999999999864347999999999999999999998888779999999998765 679999998543


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                          .+...++.++.++|||||++++.++......                     .....+.+.+.++++||++..
T Consensus       202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---------------------~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM---------------------PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT---------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred             ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc---------------------cccHHHHHHHHHHHcCCeeEE
Confidence                3557889999999999999999776542111                     112346888999999999876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.68  E-value=3.6e-16  Score=137.09  Aligned_cols=136  Identities=18%  Similarity=0.207  Sum_probs=109.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+...  +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++.  +++.++|+.+. +++
T Consensus       109 ~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~  182 (254)
T 2nxc_A          109 LALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPF  182 (254)
T ss_dssp             HHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGG
T ss_pred             HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcC
Confidence            333444443  457889999999999999998885 459999999999999999999887765  89999998762 456


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      ++||+|+++...++   ...++.++.++|||||++++......                           +.+++.+.++
T Consensus       183 ~~fD~Vv~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~---------------------------~~~~v~~~l~  232 (254)
T 2nxc_A          183 GPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILKD---------------------------RAPLVREAMA  232 (254)
T ss_dssp             CCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG---------------------------GHHHHHHHHH
T ss_pred             CCCCEEEECCcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC---------------------------CHHHHHHHHH
Confidence            78999999765433   57899999999999999998654321                           2468899999


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||++++....
T Consensus       233 ~~Gf~~~~~~~~  244 (254)
T 2nxc_A          233 GAGFRPLEEAAE  244 (254)
T ss_dssp             HTTCEEEEEEEE
T ss_pred             HCCCEEEEEecc
Confidence            999999887664

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.68  E-value=9.7e-17  Score=137.32  Aligned_cols=104  Identities=17%  Similarity=0.240  Sum_probs=88.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P--FEDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fD~v~~~  197 (359)
                      ++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.|++++...++. |++++++|+.++ +  +++++||.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            5679999999999999999974 6689999999999999999999888865 699999999874 3  678999999998


Q ss_pred             ccccccCCH--------HHHHHHHHhccCCCCEEEEE
Q 018194          198 EATCHAPKL--------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~~~--------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...+....        ..+++++.++|||||.+++.
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            654433221        26999999999999999885

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.68  E-value=3.7e-16  Score=138.88  Aligned_cols=136  Identities=21%  Similarity=0.255  Sum_probs=113.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..++..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.|+++....++.+++++..+|+.+. ++++
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~  180 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK  180 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence            45677778889999999999999999999986  36799999999999999999998888766899999999876 5667


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      +||+|++.     .+++..+++++.++|+|||++++......                           ...++.+.|++
T Consensus       181 ~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~---------------------------~~~~~~~~l~~  228 (277)
T 1o54_A          181 DVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPTTN---------------------------QVQETLKKLQE  228 (277)
T ss_dssp             SEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESSHH---------------------------HHHHHHHHHHH
T ss_pred             ccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH---------------------------HHHHHHHHHHH
Confidence            89999983     47788999999999999999998642110                           12466778889


Q ss_pred             CCCeEEEEEec
Q 018194          270 VGFEVVKEKDL  280 (359)
Q Consensus       270 aGF~~i~~~~~  280 (359)
                      +||..++....
T Consensus       229 ~gf~~~~~~~~  239 (277)
T 1o54_A          229 LPFIRIEVWES  239 (277)
T ss_dssp             SSEEEEEEECC
T ss_pred             CCCceeEEEEE
Confidence            99998876554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.68  E-value=3.3e-16  Score=135.58  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=103.3

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---CCCCCCc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---MPFEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~  190 (359)
                      ..+.+.++.+|||+|||+|.++..+++.  ++.+|+|+|+|+.+++.+.+.+...   .+++++++|+.+   +++.+++
T Consensus        71 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             SCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCC
T ss_pred             heecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCc
Confidence            3456778999999999999999999986  3479999999999988887777654   579999999987   3445679


Q ss_pred             cceEEecccccccCC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          191 FDGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       191 fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      ||+|++...   .++ ...++.++.++|||||++++............ .  ...             + ..+ .++|++
T Consensus       148 ~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~-~--~~~-------------~-~~~-~~~l~~  206 (233)
T 2ipx_A          148 VDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTAS-A--EAV-------------F-ASE-VKKMQQ  206 (233)
T ss_dssp             EEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSC-H--HHH-------------H-HHH-HHTTGG
T ss_pred             EEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCC-H--HHH-------------H-HHH-HHHHHH
Confidence            999999654   233 35568899999999999998422111000000 0  000             0 123 588899


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||++++...+.
T Consensus       207 ~Gf~~~~~~~~~  218 (233)
T 2ipx_A          207 ENMKPQEQLTLE  218 (233)
T ss_dssp             GTEEEEEEEECT
T ss_pred             CCCceEEEEecC
Confidence            999999877663

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.68  E-value=1.8e-16  Score=146.19  Aligned_cols=147  Identities=13%  Similarity=0.089  Sum_probs=112.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ..++.+|||||||+|.++..+++. ++.+++++|+ +.+++.+++      . .+++++.+|+.+ +++  .||+|++..
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~  259 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKW  259 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEcc
Confidence            446689999999999999999985 6789999999 788877653      1 359999999987 665  499999999


Q ss_pred             cccccCCHH--HHHHHHHhccCC---CCEEEEEEeeeCccccc----CchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          199 ATCHAPKLE--DVYAEVFRVLKP---GSLYVSYEWVTTDKYEA----ENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       199 ~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      ++||+++..  .+|++++++|||   ||++++.++........    .......+......+   ...++.+++.++|++
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---g~~~t~~e~~~ll~~  336 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL---GKERTKQEWEKLIYD  336 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHS---CCCEEHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCC---CCCCCHHHHHHHHHH
Confidence            999999866  999999999999   99999998776432211    001111111111111   135689999999999


Q ss_pred             CCCeEEEEEec
Q 018194          270 VGFEVVKEKDL  280 (359)
Q Consensus       270 aGF~~i~~~~~  280 (359)
                      +||++++....
T Consensus       337 aGf~~~~~~~~  347 (358)
T 1zg3_A          337 AGFSSYKITPI  347 (358)
T ss_dssp             TTCCEEEEEEE
T ss_pred             cCCCeeEEEec
Confidence            99999988764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.67  E-value=8.3e-17  Score=133.15  Aligned_cols=124  Identities=18%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCccce
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF---EDNHFDG  193 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~  193 (359)
                      .+++.+|.+|||||||.               +++|+|+.|++.|+++..     .++++.++|+.++++   ++++||+
T Consensus         7 ~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             TTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             ccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeE
Confidence            34678899999999996               238999999999998853     248999999998876   7889999


Q ss_pred             EEeccccccc-CCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCC
Q 018194          194 AYSIEATCHA-PKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGF  272 (359)
Q Consensus       194 v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF  272 (359)
                      |++..+++|+ +++..++++++++|||||++++.+.......                 . ....++.+++.++|+++||
T Consensus        67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-----------------N-NSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----------------S-SSSSCCHHHHHHHHHHTTC
T ss_pred             EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-----------------c-ccccCCHHHHHHHHHHCCC
Confidence            9999999999 8999999999999999999999543221100                 0 1123467899999999999


Q ss_pred             eEEEEEec
Q 018194          273 EVVKEKDL  280 (359)
Q Consensus       273 ~~i~~~~~  280 (359)
                       +. ....
T Consensus       129 -i~-~~~~  134 (176)
T 2ld4_A          129 -VE-VKEL  134 (176)
T ss_dssp             -EE-EEEE
T ss_pred             -cE-eecC
Confidence             44 4443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.67  E-value=1.7e-17  Score=141.52  Aligned_cols=143  Identities=18%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhcCC-CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          107 TRLHEEMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       107 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      .+.+.+.+++.+.. .++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++....+.  +++++++|+.+ 
T Consensus        14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-   90 (215)
T 4dzr_A           14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-   90 (215)
T ss_dssp             HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-
T ss_pred             HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-
Confidence            34455666666654 67889999999999999999985 356999999999999999999887765  68999999987 


Q ss_pred             CCCC-----CccceEEecccccccCC--------------------------HHHHHHHHHhccCCCCEEEEEEeeeCcc
Q 018194          185 PFED-----NHFDGAYSIEATCHAPK--------------------------LEDVYAEVFRVLKPGSLYVSYEWVTTDK  233 (359)
Q Consensus       185 ~~~~-----~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~  233 (359)
                      ++++     ++||+|+++..+++..+                          ...+++++.++|||||++++.+..    
T Consensus        91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----  166 (215)
T 4dzr_A           91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG----  166 (215)
T ss_dssp             HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT----
T ss_pred             hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC----
Confidence            5554     89999999755433221                          178889999999999995543321    


Q ss_pred             cccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH--hCCCeEEEEEe
Q 018194          234 YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK--RVGFEVVKEKD  279 (359)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGF~~i~~~~  279 (359)
                                             ....+.+.++++  ++||..++...
T Consensus       167 -----------------------~~~~~~~~~~l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          167 -----------------------HNQADEVARLFAPWRERGFRVRKVK  191 (215)
T ss_dssp             -----------------------TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred             -----------------------CccHHHHHHHHHHhhcCCceEEEEE
Confidence                                   113467888899  99998876544

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.67  E-value=7.4e-16  Score=141.32  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=99.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.+..++.++++++.+|+.+++++ +
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~  115 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E  115 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-S
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-C
Confidence            4455667777778899999999999999999987556999999996 8899999999888878999999999998765 6


Q ss_pred             ccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||+|++..+++|+.  +....+.+++++|||||.+++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            899999998888774  4678889999999999999854

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.67  E-value=1.3e-15  Score=129.64  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=81.9

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccc
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHFD  192 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD  192 (359)
                      +.+.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.+.+.+...   .++.++.+|+...    +++ ++||
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-ccee
Confidence            456789999999999999999999853 469999999999887776665543   3789999998773    444 7899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|++.. ..+ .+...++++++++|||||++++.
T Consensus       129 ~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEECC-CST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEE
Confidence            999973 221 23445699999999999999986

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.67  E-value=3.5e-16  Score=136.59  Aligned_cols=108  Identities=10%  Similarity=0.058  Sum_probs=87.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----  186 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----  186 (359)
                      .+.++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....       ++..++.+.+.    
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPK  105 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCG
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeeccccccc
Confidence            455677788889999999999999999999986 679999999999999999986543       22333333222    


Q ss_pred             -CCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 -EDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 -~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       .+++||+|++..+++|+.  +...+++++.++| |||++++..
T Consensus       106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence             257899999999999985  5678999999999 999999864

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.67  E-value=8.7e-17  Score=133.09  Aligned_cols=119  Identities=12%  Similarity=0.073  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC
Q 018194          108 RLHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP  185 (359)
Q Consensus       108 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~  185 (359)
                      ....+.+...+. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++++...++.++++++.+|+.+ ++
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            334455555555 5678899999999999999999875569999999999999999999888877789999999977 33


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHH--hccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVF--RVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~  227 (359)
                      ...++||+|++...++ ..+....++.+.  ++|||||.+++..
T Consensus        96 ~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~  138 (177)
T 2esr_A           96 CLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCET  138 (177)
T ss_dssp             HBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            3346799999986643 235667777777  9999999999864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=1.2e-16  Score=135.10  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--CCCCc-cceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP--FEDNH-FDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~-fD~v~~~  197 (359)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++. ++++++++|+.+..  +++++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            57899999999999999877654469999999999999999999988874 58999999987743  23578 9999998


Q ss_pred             ccccccCCHHHHHHHH--HhccCCCCEEEEEE
Q 018194          198 EATCHAPKLEDVYAEV--FRVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~  227 (359)
                      ..++ ..+...+++.+  .++|||||.+++..
T Consensus       133 ~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~  163 (201)
T 2ift_A          133 PPFH-FNLAEQAISLLCENNWLKPNALIYVET  163 (201)
T ss_dssp             CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCC-CccHHHHHHHHHhcCccCCCcEEEEEE
Confidence            7743 56788899999  67899999998854

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.66  E-value=4.9e-16  Score=141.34  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=96.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|+++....++.++++++++|+.+++++++
T Consensus        26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSS
T ss_pred             HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCC
Confidence            334444444555788999999999999999998644599999999 5999999999998888889999999999888778


Q ss_pred             ccceEEeccc---ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          190 HFDGAYSIEA---TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       190 ~fD~v~~~~~---l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +||+|++..+   +.+..++..++.++.++|||||.++.
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            9999999754   33445688999999999999999974

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.66  E-value=8.5e-17  Score=131.39  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=92.1

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      +...+  .+..+|||+|||+|.++..++. .++++|+++|+|+.|++.+++++...|...++++  .|.... .+.++||
T Consensus        43 ~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~D  117 (200)
T 3fzg_A           43 VFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYD  117 (200)
T ss_dssp             HHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEE
T ss_pred             HHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcC
Confidence            44444  4577999999999999999977 4678999999999999999999999887666666  666543 4568899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|++..++|++++.+..+.++.+.|||||.++-.+
T Consensus       118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             EEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            99999999999878888889999999999998754

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.66  E-value=1.9e-15  Score=134.48  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeC-CHHHHHHHHHHH-----HHcCCC----CCeEE
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITI-NEYQVNRARLHN-----KKAGLD----SLCEV  176 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~-s~~~~~~a~~~~-----~~~~~~----~~i~~  176 (359)
                      ...+.+.+.......++.+|||+|||+|.++..+++....+|+++|+ |+.+++.+++++     ...++.    +++++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            34555666666555678899999999999999988863349999999 899999999998     555543    47888


Q ss_pred             EEcCCCCCC--C----CCCccceEEecccccccCCHHHHHHHHHhccC---C--CCEEEEEEeeeCcccccCchHHHHHH
Q 018194          177 VCGNFLKMP--F----EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK---P--GSLYVSYEWVTTDKYEAENKEHVDII  245 (359)
Q Consensus       177 ~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~~~~~~~~~~~~~~~  245 (359)
                      ...|..+..  +    ++++||+|++..+++|.++...+++.+.++|+   |  ||.+++.-....       ...    
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~-------~~~----  212 (281)
T 3bzb_A          144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR-------PHL----  212 (281)
T ss_dssp             EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC----------------
T ss_pred             EEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee-------ccc----
Confidence            877765531  2    35789999999999999999999999999999   9  998776321110       000    


Q ss_pred             hhhhcCCCCCCCCCHHHHHHHHHhCC-CeEEEEEec
Q 018194          246 QGIERGDALPGLRSYAEITEIAKRVG-FEVVKEKDL  280 (359)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~i~~~~~  280 (359)
                                 .....++.+.++++| |++......
T Consensus       213 -----------~~~~~~~~~~l~~~G~f~v~~~~~~  237 (281)
T 3bzb_A          213 -----------AERDLAFFRLVNADGALIAEPWLSP  237 (281)
T ss_dssp             --------------CTHHHHHHHHSTTEEEEEEECC
T ss_pred             -----------chhHHHHHHHHHhcCCEEEEEeccc
Confidence                       001236677899999 999877543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.65  E-value=8.5e-16  Score=136.72  Aligned_cols=112  Identities=20%  Similarity=0.251  Sum_probs=97.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc-C-CCCCeEEEEcCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA-G-LDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~~~  186 (359)
                      ...++..+.+.++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.|+++.... + +..++++.++|+.+.++
T Consensus        88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            355677778889999999999999999999985  4679999999999999999998876 4 45689999999998877


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++++||+|++     +.+++..+++++.++|+|||++++..
T Consensus       168 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          168 PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            7789999998     45678899999999999999999864

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.65  E-value=1.2e-15  Score=129.99  Aligned_cols=127  Identities=17%  Similarity=0.080  Sum_probs=105.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      +++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++..++.+++++..+|..+...+.+.||+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            46789999999999999999986 34589999999999999999999999988999999999886544447999887554


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      ..  .-...++.+..+.|+++|+|++.-                             ....+.++++|.+.||.+++..
T Consensus       100 Gg--~lI~~IL~~~~~~l~~~~~lIlqp-----------------------------~~~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A          100 GG--RLIADILNNDIDKLQHVKTLVLQP-----------------------------NNREDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             CH--HHHHHHHHHTGGGGTTCCEEEEEE-----------------------------SSCHHHHHHHHHHTTEEEEEEE
T ss_pred             ch--HHHHHHHHHHHHHhCcCCEEEEEC-----------------------------CCChHHHHHHHHHCCCEEEEEE
Confidence            33  236788899999999999999841                             1134689999999999998866

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.65  E-value=3.5e-16  Score=142.94  Aligned_cols=161  Identities=13%  Similarity=0.111  Sum_probs=92.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcC----------CCCCeEEEE
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAG----------LDSLCEVVC  178 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~----------~~~~i~~~~  178 (359)
                      ...++..+.+.++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|+++....+          ...++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3455666778899999999999999999999853  3799999999999999999987632          335899999


Q ss_pred             cCCCCC--CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh-h-------
Q 018194          179 GNFLKM--PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG-I-------  248 (359)
Q Consensus       179 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~-------  248 (359)
                      +|+.+.  ++++++||+|++..     +++..++.++.++|||||++++.......    .......+... .       
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~----~~~~~~~l~~~~~~~~~~~~  244 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQ----VIELLDGIRTCELALSCEKI  244 (336)
T ss_dssp             SCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHH----HHHHHHHHHHHTCCEEEEEE
T ss_pred             CChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHH----HHHHHHHHHhcCCCcccceE
Confidence            999886  45667899999843     45556899999999999999986532211    00011111110 0       


Q ss_pred             hc-C-CCCCC---CCCHHHHHHHHHhCCCeEEEEEec
Q 018194          249 ER-G-DALPG---LRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       249 ~~-~-~~~~~---~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      .. . ..+..   .....++.+.|+++||++++....
T Consensus       245 ~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~  281 (336)
T 2b25_A          245 SEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQ  281 (336)
T ss_dssp             ECCCCCCEEECC-------------------------
T ss_pred             EEecccceEEEeecccccchhhhhccccccccccccc
Confidence            00 0 00000   011127889999999999987665

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.65  E-value=1.1e-15  Score=142.35  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CCeEEEEc
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRA-------RLHNKKAGLD-SLCEVVCG  179 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a-------~~~~~~~~~~-~~i~~~~~  179 (359)
                      .....+++.+.+.++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|       ++++...|+. .+++++++
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            3455667777888999999999999999999998544 5899999999999988       8888887753 68999998


Q ss_pred             CCCCC--CC--CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          180 NFLKM--PF--EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       180 d~~~~--~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      |....  ++  ..++||+|+++..+ +.+++..+|+++.++|||||++++.+...
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            65432  12  24789999987666 45788899999999999999999875433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.65  E-value=6.1e-15  Score=126.42  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=98.1

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccc
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFD  192 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD  192 (359)
                      +.+.+|.+|||+|||+|.++..+++.  +..+|+++|+|+.|++...+.+...   .|+.++.+|+....   ...++||
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D  148 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVD  148 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceE
Confidence            34889999999999999999999985  3569999999999986655544432   47999999997642   1246899


Q ss_pred             eEEecccccccCCHHHHH-HHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          193 GAYSIEATCHAPKLEDVY-AEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      +|++..+.   ++....+ ..+.+.|||||++++.......  +.                ....-....+..+.|+++|
T Consensus       149 ~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~--d~----------------t~~~~e~~~~~~~~L~~~g  207 (232)
T 3id6_C          149 VLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI--DV----------------TKDPKEIYKTEVEKLENSN  207 (232)
T ss_dssp             EEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------------------------CCSSSSTTHHHHHHHHTT
T ss_pred             EEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc--cc----------------CCCHHHHHHHHHHHHHHCC
Confidence            99998653   5655555 5566699999999986311110  00                0000011135667888999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |++++..++
T Consensus       208 f~~~~~~~l  216 (232)
T 3id6_C          208 FETIQIINL  216 (232)
T ss_dssp             EEEEEEEEC
T ss_pred             CEEEEEecc
Confidence            999998876

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.65  E-value=3.5e-16  Score=134.32  Aligned_cols=107  Identities=14%  Similarity=0.143  Sum_probs=91.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-CC----CCcc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP-FE----DNHF  191 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-~~----~~~f  191 (359)
                      ..++.+|||||||+|..+..+++.  .+++|+++|+|+.+++.|++++...++.++++++++|+.+ ++ ++    .++|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            346789999999999999999984  3689999999999999999999999887789999999855 22 22    2689


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|++....++..+...++..+ ++|||||++++.+
T Consensus       136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeC
Confidence            9999988877776677788888 9999999998843

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.64  E-value=5e-16  Score=129.49  Aligned_cols=117  Identities=15%  Similarity=0.057  Sum_probs=94.3

Q ss_pred             HHHHHHHhc-CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          110 HEEMAVDLI-DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       110 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      ..+.+...+ ...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....++.++++++++|+.+..   
T Consensus        31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  110 (187)
T 2fhp_A           31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  110 (187)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence            334444444 3457889999999999999988886557999999999999999999988887678999999997732   


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHH--HhccCCCCEEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEV--FRVLKPGSLYVSYE  227 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~~  227 (359)
                       .++++||+|++...++ ..+....++.+  .++|+|||.+++..
T Consensus       111 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~  154 (187)
T 2fhp_A          111 YEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCET  154 (187)
T ss_dssp             HHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence             2267899999987743 45677888888  89999999998853

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.64  E-value=2e-17  Score=143.94  Aligned_cols=142  Identities=20%  Similarity=0.241  Sum_probs=111.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++..+++++++|+.+++ ++++||+|++...++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            6889999999999999999986 58999999999999999999998887668999999998876 567999999999999


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +..+....+.++.++|+|||.+++...             .......  ....+...+.+++..++...|...++....
T Consensus       156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~-------------~~~~~~~--~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~  219 (241)
T 3gdh_A          156 GPDYATAETFDIRTMMSPDGFEIFRLS-------------KKITNNI--VYFLPRNADIDQVASLAGPGGQVEIEQNFL  219 (241)
T ss_dssp             SGGGGGSSSBCTTTSCSSCHHHHHHHH-------------HHHCSCE--EEEEETTBCHHHHHHTTCTTCCEEEEEEEE
T ss_pred             CcchhhhHHHHHHhhcCCcceeHHHHH-------------HhhCCce--EEECCCCCCHHHHHHHhccCCCEEEEehhh
Confidence            988777788899999999999654210             0000000  001234446778888888888776655443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.64  E-value=7.6e-16  Score=132.04  Aligned_cols=120  Identities=11%  Similarity=0.104  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCC
Q 018194          105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNF  181 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~  181 (359)
                      .........+....+..++.+|||||||+|..+..+++.  ++++|+++|+|+.+++.|++++...++. ++++++++|+
T Consensus        39 ~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda  118 (221)
T 3dr5_A           39 EMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH
T ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH
Confidence            334455566666666555669999999999999999985  3689999999999999999999999987 7899999998


Q ss_pred             CCCC--CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          182 LKMP--FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       182 ~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+..  +++++||+|++...   ..+...+++++.++|||||++++.+
T Consensus       119 ~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          119 LDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             HHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             HHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            7642  33689999998653   3467789999999999999999844

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.64  E-value=2.2e-15  Score=128.18  Aligned_cols=126  Identities=16%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-ccceEEecc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN-HFDGAYSIE  198 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~v~~~~  198 (359)
                      +++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++..++.+++++..+|..+ +++.+ .||+|+...
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcC
Confidence            46789999999999999999985 3468999999999999999999999998889999999965 22333 699988765


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      +-.  .-...++.+..+.|+|+|++++.-.                             ...+.++++|.+.||.+++..
T Consensus        93 ~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~-----------------------------~~~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           93 MGG--RLIARILEEGLGKLANVERLILQPN-----------------------------NREDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             ECH--HHHHHHHHHTGGGCTTCCEEEEEES-----------------------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCh--HHHHHHHHHHHHHhCCCCEEEEECC-----------------------------CCHHHHHHHHHHCCCEEEEEE
Confidence            432  1267889999999999999988311                             134688999999999998865

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.64  E-value=5.2e-16  Score=131.33  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=87.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++ .+++++++|+.+ ++...++||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            5789999999999999987775335999999999999999999988887 589999999877 45556789999998763


Q ss_pred             cccCCHHHHHHHHHh--ccCCCCEEEEEE
Q 018194          201 CHAPKLEDVYAEVFR--VLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~--~LkpgG~l~~~~  227 (359)
                       +..+...+++.+.+  +|+|||.+++..
T Consensus       133 -~~~~~~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A          133 -RRGLLEETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             -STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             -CCCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence             35677888888866  599999998754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.64  E-value=4.8e-15  Score=129.34  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=96.5

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+...+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....++..++++..+|+.+..+++++|
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  159 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIF  159 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCB
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcc
Confidence            45667778889999999999999999999987 78999999999999999999988887678999999998854356789


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|++     +.+++..+++++.++|+|||++++..
T Consensus       160 D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          160 HAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             SEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             cEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99997     34678899999999999999999854

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.64  E-value=6.8e-16  Score=133.53  Aligned_cols=111  Identities=19%  Similarity=0.247  Sum_probs=93.2

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCcc
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FEDNHF  191 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~f  191 (359)
                      ...+...++.+|||||||+|..+..+++. ++.+|+++|+|+.+++.|++++...++.++++++.+|+.+. + ..+++|
T Consensus        64 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~f  143 (232)
T 3ntv_A           64 KQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVY  143 (232)
T ss_dssp             HHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCE
T ss_pred             HHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCc
Confidence            33333456789999999999999999984 46899999999999999999999998888999999999774 2 236899


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      |+|++...   ..+...+++++.++|||||++++.+.
T Consensus       144 D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          144 DMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             EEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             cEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence            99997653   45678899999999999999988543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.63  E-value=2.3e-15  Score=139.07  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHhcC--CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          105 DATRLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      ...+.+.+.+...+.  ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.  ++++++|+.
T Consensus       214 ~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~  290 (381)
T 3dmg_A          214 PASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVD  290 (381)
T ss_dssp             HHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTT
T ss_pred             HHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchh
Confidence            444555555655542  346789999999999999999986 679999999999999999999887754  899999999


Q ss_pred             CCCCCCCccceEEecccccc-----cCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          183 KMPFEDNHFDGAYSIEATCH-----APKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       183 ~~~~~~~~fD~v~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.+.++++||+|+++..+++     ..+...+++++.++|||||.++++.
T Consensus       291 ~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          291 EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             TTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            87766689999999988887     4467899999999999999999863

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=2.6e-15  Score=128.20  Aligned_cols=111  Identities=24%  Similarity=0.253  Sum_probs=94.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+.+.+.++.+|||+|||+|.++..+++..+  .+|+++|+|+.+++.++++....+++ ++++..+|+......
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~  143 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEP  143 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGG
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCC
Confidence            345666777888899999999999999999998643  79999999999999999998887764 599999998653223


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .++||+|++..+++|++      +++.++|||||++++..
T Consensus       144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEE
Confidence            57899999999999987      48899999999999864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.63  E-value=2.3e-15  Score=129.31  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=104.6

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ++++.+|||||||+|.++..+++. +..+|+++|+++.+++.|+++++..++.+++++..+|..+...+..+||+|++..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            346789999999999999999985 3458999999999999999999999998889999999987554434699988755


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      +..  .-...++.+..+.|+++|+|++.-                             ....+.++++|.+.||.+++..
T Consensus        99 mGg--~lI~~IL~~~~~~L~~~~~lIlq~-----------------------------~~~~~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           99 MGG--TLIRTILEEGAAKLAGVTKLILQP-----------------------------NIAAWQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             ECH--HHHHHHHHHTGGGGTTCCEEEEEE-----------------------------SSCHHHHHHHHHHHTEEEEEEE
T ss_pred             Cch--HHHHHHHHHHHHHhCCCCEEEEEc-----------------------------CCChHHHHHHHHHCCCEEEEEE
Confidence            432  236788899999999999999841                             1134688999999999987655

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.63  E-value=1.8e-15  Score=130.68  Aligned_cols=109  Identities=20%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....++..+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++....+   +++++.+|+.+....+
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~  132 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEE  132 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGG
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccC
Confidence            345567777788889999999999999999999864 799999999999999999887654   7999999998733345


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++||+|++..+++|++      .++.++|||||++++..
T Consensus       133 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          133 KPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEE
Confidence            7899999999999986      36899999999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.63  E-value=2.3e-15  Score=136.35  Aligned_cols=112  Identities=18%  Similarity=0.242  Sum_probs=96.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .....++..+.+.++.+|||||||+|.++..+++..  ..+|+|+|+|+.+++.|+++....++. ++++..+|+.+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc
Confidence            445667778888899999999999999999999853  357999999999999999999888875 59999999988554


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++++||+|++..+++|++      +++.++|||||++++..
T Consensus       141 ~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred             cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEE
Confidence            567899999999999987      57889999999999864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.63  E-value=7e-15  Score=129.47  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=84.1

Q ss_pred             CCCEEEEECCCCCh----HHHHHHhh-c----CCEEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 018194          122 AGDRILDVGCGVGG----PMRAIAAH-S----RANVVGITINEYQVNRARLHNKK-----------------------AG  169 (359)
Q Consensus       122 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~g~D~s~~~~~~a~~~~~~-----------------------~~  169 (359)
                      ++.+|+|+|||||.    ++..+++. +    +.+|+|+|+|+.|++.|++....                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55556554 2    36999999999999999986410                       00


Q ss_pred             -------CCCCeEEEEcCCCCCCCC-CCccceEEecccccccCCH--HHHHHHHHhccCCCCEEEE
Q 018194          170 -------LDSLCEVVCGNFLKMPFE-DNHFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       170 -------~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~  225 (359)
                             +..+|.|.++|+.+.+++ .++||+|+|.++++|+++.  .++++++++.|+|||++++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                   113699999999986665 5789999999999999754  7999999999999999987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=1.6e-15  Score=132.57  Aligned_cols=107  Identities=20%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCC--CCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFE--DNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~--~~~fD~v  194 (359)
                      ..++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++++|+.+ ++..  .++||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            446789999999999999999985 3 689999999999999999999999988899999999876 2322  3489999


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ++...   .++...+++++.++|||||++++.+..
T Consensus       141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          141 FIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             EECSC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            98653   456788999999999999999886543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.62  E-value=1.6e-14  Score=124.34  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=101.8

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~  190 (359)
                      ..+.+.++.+|||+|||+|.++..+++..  +.+|+|+|+|+.+++.+++++...   .+++++++|+.+..   ...++
T Consensus        67 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred             HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCC
Confidence            34457789999999999999999999863  479999999999999998887643   57999999998732   12368


Q ss_pred             cceEEecccccccCCHH-HHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          191 FDGAYSIEATCHAPKLE-DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      ||+|++...   .++.. .+++++.++|||||++++. +.... ........ .              ....++.++ ++
T Consensus       144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~-~~~~~~~~-~--------------~~~~~l~~l-~~  202 (227)
T 1g8a_A          144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA-VKSRS-IDVTKEPE-Q--------------VFREVEREL-SE  202 (227)
T ss_dssp             EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE-EEGGG-TCTTSCHH-H--------------HHHHHHHHH-HT
T ss_pred             ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE-EecCC-CCCCCChh-h--------------hhHHHHHHH-Hh
Confidence            999998654   33443 4599999999999999987 32221 11100000 1              123466666 77


Q ss_pred             CCCeEEEEEec
Q 018194          270 VGFEVVKEKDL  280 (359)
Q Consensus       270 aGF~~i~~~~~  280 (359)
                      + |++++..++
T Consensus       203 ~-f~~~~~~~~  212 (227)
T 1g8a_A          203 Y-FEVIERLNL  212 (227)
T ss_dssp             T-SEEEEEEEC
T ss_pred             h-ceeeeEecc
Confidence            7 999988776

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.62  E-value=5.7e-15  Score=130.58  Aligned_cols=106  Identities=22%  Similarity=0.326  Sum_probs=87.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..+.+...+. .++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++.      .++.+..+|+.++++++
T Consensus        74 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~  146 (269)
T 1p91_A           74 IVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD  146 (269)
T ss_dssp             HHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT
T ss_pred             HHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCC
Confidence            3344444332 46789999999999999999986 4689999999999999998764      36899999999988888


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ++||+|++..+.       ..++++.++|||||++++....
T Consensus       147 ~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          147 TSMDAIIRIYAP-------CKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             TCEEEEEEESCC-------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred             CceeEEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcC
Confidence            999999987653       2478999999999999987643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.61  E-value=2.3e-15  Score=130.19  Aligned_cols=106  Identities=20%  Similarity=0.332  Sum_probs=84.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH------cCCCCCeEEEEcCCCC-CC--CCCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK------AGLDSLCEVVCGNFLK-MP--FEDN  189 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~-~~--~~~~  189 (359)
                      ..++.+|||||||+|.++..+++. ++..|+|+|+|+.|++.|++++..      .++ .|+.++++|+.+ ++  ++++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCc
Confidence            345679999999999999999985 568999999999999999987654      233 579999999987 55  6788


Q ss_pred             ccceEEecccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||.|++.+.-.+...        ...+++++.++|||||.|++.
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            9999987654332211        147999999999999999884

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=2.3e-15  Score=132.40  Aligned_cols=113  Identities=21%  Similarity=0.193  Sum_probs=94.0

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCC-----
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK---AGLDSLCEVVCGNFLKM-----  184 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~-----  184 (359)
                      +...+...++.+|||+|||+|.++..+++. ++.+|+|+|+++.+++.|++++..   .++.++++++++|+.+.     
T Consensus        28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~  107 (260)
T 2ozv_A           28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV  107 (260)
T ss_dssp             HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred             HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence            455667778889999999999999999986 457999999999999999999887   77777899999999886     


Q ss_pred             --CCCCCccceEEeccccccc------------------CCHHHHHHHHHhccCCCCEEEEE
Q 018194          185 --PFEDNHFDGAYSIEATCHA------------------PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 --~~~~~~fD~v~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        ++++++||+|+++-.....                  .+...+++.+.++|||||++++.
T Consensus       108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence              2557899999997333211                  24788999999999999999884

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.61  E-value=4.9e-15  Score=133.86  Aligned_cols=140  Identities=16%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+...+.+.++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.++++....++. +++++++|+.+++...++
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~  187 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVE  187 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCC
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccccccc
Confidence            34556678899999999999999999999853  479999999999999999999988875 699999999887644578


Q ss_pred             cceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194          191 FDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI  248 (359)
Q Consensus       191 fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
                      ||+|++..      ++.+.++                ...+|+++.++|||||++++.......                
T Consensus       188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~----------------  251 (315)
T 1ixk_A          188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP----------------  251 (315)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG----------------
T ss_pred             CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh----------------
Confidence            99999842      2332232                158999999999999999886432211                


Q ss_pred             hcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          249 ERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                              ......+...|++.||+.+..
T Consensus       252 --------~Ene~~v~~~l~~~~~~~~~~  272 (315)
T 1ixk_A          252 --------EENEFVIQWALDNFDVELLPL  272 (315)
T ss_dssp             --------GGTHHHHHHHHHHSSEEEECC
T ss_pred             --------HHhHHHHHHHHhcCCCEEecC
Confidence                    012245667788889887643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.61  E-value=4.6e-15  Score=136.99  Aligned_cols=115  Identities=18%  Similarity=0.215  Sum_probs=95.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC--CeEEEEcCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDS--LCEVVCGNFLKMPFED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~  188 (359)
                      +.+++.+...++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.++++....++..  ++++..+|+.+ ++++
T Consensus       212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~  290 (375)
T 4dcm_A          212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  290 (375)
T ss_dssp             HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred             HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence            45677777777899999999999999999985 47899999999999999999998887653  58889999987 5667


Q ss_pred             CccceEEecccccccC-----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAP-----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++||+|+++..+++..     ....+++++.++|||||+++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            8999999998887532     23478999999999999999863

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.61  E-value=2.1e-15  Score=135.65  Aligned_cols=139  Identities=21%  Similarity=0.305  Sum_probs=102.9

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCCCC--CCCccce
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK---AGLDSLCEVVCGNFLKMPF--EDNHFDG  193 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~~~--~~~~fD~  193 (359)
                      ..++.+|||||||+|.++..+++. +..+|+++|+|+.+++.+++++..   ....++++++.+|+.+.+.  ++++||+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            356789999999999999999986 356999999999999999998742   1224579999999987543  4689999


Q ss_pred             EEecccccccCCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          194 AYSIEATCHAPKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       194 v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      |++.....+.+..    ..+++++.++|||||++++.....   +.                    .......+.+.|++
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~---~~--------------------~~~~~~~~~~~l~~  229 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI---WL--------------------DLELIEKMSRFIRE  229 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT---TT--------------------CHHHHHHHHHHHHH
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc---cc--------------------chHHHHHHHHHHHh
Confidence            9997665443332    689999999999999999852110   00                    00124578889999


Q ss_pred             CCCeEEEEEecC
Q 018194          270 VGFEVVKEKDLA  281 (359)
Q Consensus       270 aGF~~i~~~~~~  281 (359)
                      +||..+......
T Consensus       230 ~GF~~v~~~~~~  241 (304)
T 3bwc_A          230 TGFASVQYALMH  241 (304)
T ss_dssp             HTCSEEEEEECC
T ss_pred             CCCCcEEEEEee
Confidence            999988876553

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.60  E-value=2.8e-15  Score=142.59  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      +...+.+++.+...++.+|||||||+|.++..+++.+..+|+|+|+|+ +++.|++++...++.++++++.+|+.+++++
T Consensus       144 ~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~  222 (480)
T 3b3j_A          144 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  222 (480)
T ss_dssp             HHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC
Confidence            344556666666667899999999999999999987557999999998 9999999999999888999999999987665


Q ss_pred             CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~  225 (359)
                       ++||+|++..+++|+.  +....+.++.++|||||.+++
T Consensus       223 -~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          223 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             -SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             -CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence             5899999988777764  356788899999999999985

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.60  E-value=1.3e-15  Score=133.37  Aligned_cols=118  Identities=10%  Similarity=0.064  Sum_probs=90.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHc---CCCCC----------
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKA---GLDSL----------  173 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~----------  173 (359)
                      ....++..+...++.+|||+|||+|.++..+++.   ++.+|+|+|+|+.+++.|+++....   ++..+          
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~  118 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  118 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence            4444555555456789999999999999999875   3579999999999999999877654   33222          


Q ss_pred             ---------------eE-------------EEEcCCCCCCC-----CCCccceEEecccccccCC---------HHHHHH
Q 018194          174 ---------------CE-------------VVCGNFLKMPF-----EDNHFDGAYSIEATCHAPK---------LEDVYA  211 (359)
Q Consensus       174 ---------------i~-------------~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~~~---------~~~~l~  211 (359)
                                     ++             +.++|+.+...     ..++||+|+++..+.+..+         ...+++
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~  198 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR  198 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence                           66             99999987321     3458999999876655433         458999


Q ss_pred             HHHhccCCCCEEEEEE
Q 018194          212 EVFRVLKPGSLYVSYE  227 (359)
Q Consensus       212 ~~~~~LkpgG~l~~~~  227 (359)
                      ++.++|||||+++++.
T Consensus       199 ~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          199 SLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHSCTTCEEEEEE
T ss_pred             HHHHhcCCCcEEEEeC
Confidence            9999999999999843

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=2.4e-15  Score=130.08  Aligned_cols=112  Identities=25%  Similarity=0.351  Sum_probs=94.0

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC--CC
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFE--DN  189 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~--~~  189 (359)
                      +...+...++.+|||+|||+|..+..+++. ++.+|+++|+|+.+++.|++++...++.++++++.+|+.+. +..  ++
T Consensus        46 l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  125 (233)
T 2gpy_A           46 LLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYP  125 (233)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSC
T ss_pred             HHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCC
Confidence            333444457789999999999999999985 46899999999999999999999888877899999999874 322  57


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +||+|++....   .+...+++++.++|||||++++.++
T Consensus       126 ~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          126 LFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             CEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            89999997764   4788999999999999999998643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.59  E-value=1.1e-14  Score=125.25  Aligned_cols=109  Identities=23%  Similarity=0.253  Sum_probs=90.4

Q ss_pred             HHHHhcC--CCCCCEEEEECCCCChHHHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCC
Q 018194          113 MAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSR--ANVVGITINEYQVNRARLHNKKAGL----DSLCEVVCGNFLKM  184 (359)
Q Consensus       113 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~  184 (359)
                      .++..+.  +.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.++++....+.    ..++++.++|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            3444443  67889999999999999999998533  6999999999999999999887653    35799999999876


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +...++||+|++...++++.      +++.++|||||++++..
T Consensus       146 ~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             cccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEE
Confidence            55567899999998887664      68899999999999864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.59  E-value=3.4e-15  Score=128.20  Aligned_cols=106  Identities=21%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC---CCccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FE---DNHFD  192 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~---~~~fD  192 (359)
                      ..++.+|||||||+|..+..+++. + +++|+++|+++.+++.+++++...++.++++++++|+.+..  ++   .++||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            346789999999999999999985 3 67999999999999999999999998878999999996531  11   26799


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +|++...   .++...+++++.++|||||++++.+.
T Consensus       136 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          136 FIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9998765   34667899999999999998887543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.59  E-value=1.9e-14  Score=132.42  Aligned_cols=117  Identities=18%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .+...++......++.+|||+|||+|.++..++..  ++.+|+|+|+|+.+++.|++++...++. ++++.++|+.+++.
T Consensus       190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~  268 (354)
T 3tma_A          190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR  268 (354)
T ss_dssp             HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc
Confidence            34556677778888999999999999999999985  4589999999999999999999999987 89999999999887


Q ss_pred             CCCccceEEecccccccC--------CHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAP--------KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +.+.||+|+++-......        ....+++++.++|||||.+++.
T Consensus       269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            777899999975543211        1368999999999999999985

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.59  E-value=5.9e-15  Score=135.27  Aligned_cols=113  Identities=21%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+.|.+.....+|.+|||||||+|.++...|+....+|+++|.|+ +++.|++.++..++.++|+++++|++++.++ ++
T Consensus        72 ~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~  149 (376)
T 4hc4_A           72 RLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQ  149 (376)
T ss_dssp             HHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred             HHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-cc
Confidence            344443333346889999999999999888876446899999996 8899999999999999999999999998876 68


Q ss_pred             cceEEecc---cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          191 FDGAYSIE---ATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       191 fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ||+|++-.   .+.+-.....++....++|||||.++-
T Consensus       150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccEEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            99999843   444445688999999999999999874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.58  E-value=7.6e-15  Score=127.15  Aligned_cols=110  Identities=21%  Similarity=0.262  Sum_probs=92.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED-  188 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-  188 (359)
                      ....+++.+.+.++.+|||+|||+|.++..+++..+.+|+++|+|+.+++.++++....++. ++++..+|+ ..+++. 
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~~~~~~  156 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SKGFPPK  156 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GGCCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-ccCCCCC
Confidence            44556667788889999999999999999999864479999999999999999999888765 599999998 334443 


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..||+|++..+++++++      ++.+.|||||++++..
T Consensus       157 ~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          157 APYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEE
Confidence            35999999999988763      7889999999999854

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.58  E-value=9.2e-15  Score=129.07  Aligned_cols=148  Identities=16%  Similarity=0.166  Sum_probs=97.2

Q ss_pred             HHHhcCCC-CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC---CCC
Q 018194          114 AVDLIDVK-AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCE-VVCGNFLKMP---FED  188 (359)
Q Consensus       114 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~---~~~  188 (359)
                      ++..+.+. ++.+|||+|||||.++..+++....+|+|+|+|+.|++.+.+..      +++. +...|+..++   ++.
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~~  149 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFTE  149 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCTT
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCCC
Confidence            44445444 57899999999999999998874469999999999998854321      2232 2233443332   344


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC----CCCCHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP----GLRSYAEIT  264 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  264 (359)
                      .+||+|++..++++   ...+|.++.++|||||.+++..   .+.+......       +..+....    +....+++.
T Consensus       150 ~~fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lv---kPqfe~~~~~-------~~~~G~vrd~~~~~~~~~~v~  216 (291)
T 3hp7_A          150 GLPSFASIDVSFIS---LNLILPALAKILVDGGQVVALV---KPQFEAGREQ-------IGKNGIVRESSIHEKVLETVT  216 (291)
T ss_dssp             CCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEE---CGGGTSCGGG-------CC-CCCCCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEEE---CcccccChhh-------cCCCCccCCHHHHHHHHHHHH
Confidence            56999999887764   4789999999999999999852   1111111000       00000000    112457889


Q ss_pred             HHHHhCCCeEEEEEec
Q 018194          265 EIAKRVGFEVVKEKDL  280 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~  280 (359)
                      ++++++||.+.....-
T Consensus       217 ~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          217 AFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHHHTTEEEEEEEEC
T ss_pred             HHHHHCCCEEEEEEEC
Confidence            9999999998876543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.58  E-value=1.1e-14  Score=125.39  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=91.4

Q ss_pred             HHHHhc--CCCCCCEEEEECCCCChHHHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcC
Q 018194          113 MAVDLI--DVKAGDRILDVGCGVGGPMRAIAAHSR------ANVVGITINEYQVNRARLHNKKAGL----DSLCEVVCGN  180 (359)
Q Consensus       113 ~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~~d  180 (359)
                      .+++.+  .+.++.+|||||||+|.++..+++..+      .+|+++|+++.+++.|+++....++    ..++++..+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            344444  467889999999999999999998643      6999999999999999999888763    3579999999


Q ss_pred             CCCCC----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          181 FLKMP----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       181 ~~~~~----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +.+..    ...++||+|++...++++.      +++.++|||||++++...
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASELP------EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSCC------HHHHHHEEEEEEEEEEEE
T ss_pred             hHhcccccCccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEc
Confidence            98754    4567899999999888763      788999999999998643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.57  E-value=3.9e-15  Score=127.97  Aligned_cols=108  Identities=16%  Similarity=0.202  Sum_probs=90.5

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCC----Ccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FED----NHF  191 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~----~~f  191 (359)
                      ..++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.+++++...++.++++++++|+.+. + +..    ++|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            346789999999999999999985 3 6899999999999999999999999887899999998653 2 111    789


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      |+|++...   ..+...+++++.++|||||++++.+...
T Consensus       142 D~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          142 DLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             cEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            99997553   3467889999999999999999865443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=1.7e-15  Score=124.33  Aligned_cols=101  Identities=21%  Similarity=0.253  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC--CCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-FE--DNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~--~~~fD~v~~~  197 (359)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++  +++++++|+.+. + .+  .++||+|++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence            6789999999999999999986 45799999999999999999988776  799999998763 2 11  2479999998


Q ss_pred             ccccccCCHHHHHHHHH--hccCCCCEEEEEE
Q 018194          198 EATCHAPKLEDVYAEVF--RVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~  227 (359)
                      ..++  .+...+++.+.  ++|||||.+++..
T Consensus       118 ~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~  147 (171)
T 1ws6_A          118 PPYA--MDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             CCTT--SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             CCCc--hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence            7765  56667777777  9999999998854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.57  E-value=3.4e-15  Score=127.06  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEecc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYSIE  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~  198 (359)
                      ++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++++|+.+. +..++ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5679999999999999999985 3 6799999999999999999998888777899999999763 43346 99999874


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .   ..+...+++++.++|||||++++.+
T Consensus       135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 D---VFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             T---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             C---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            2   4578899999999999999998854

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.57  E-value=1.3e-14  Score=129.19  Aligned_cols=114  Identities=26%  Similarity=0.337  Sum_probs=91.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .+.+.++..+...++.+|||+|||+|.++..+++.++++|+|+|+|+.+++.|++++...++.++++++++|+.+. ++ 
T Consensus       110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-  187 (284)
T 1nv8_A          110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-  187 (284)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-
Confidence            3444444444334667999999999999999988766899999999999999999999988877799999999873 33 


Q ss_pred             Ccc---ceEEecc------------cccccC--------CHHHHHHHHH-hccCCCCEEEE
Q 018194          189 NHF---DGAYSIE------------ATCHAP--------KLEDVYAEVF-RVLKPGSLYVS  225 (359)
Q Consensus       189 ~~f---D~v~~~~------------~l~~~~--------~~~~~l~~~~-~~LkpgG~l~~  225 (359)
                      ++|   |+|+++-            +. |-|        |...+++++. +.|+|||++++
T Consensus       188 ~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          188 EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence            579   9999972            22 222        2237899999 99999999997

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.56  E-value=2.2e-14  Score=130.21  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCC----CCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMPF----EDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~----~~~~fD~v  194 (359)
                      ..++.+|||+|||+|.++..+++. +++|+++|+|+.+++.|++++...++.+ +++++++|+.+...    ..++||+|
T Consensus       151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            346789999999999999999985 5699999999999999999999888765 59999999977431    14689999


Q ss_pred             Eeccc----------ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEA----------TCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~----------l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++.-.          ..+..+...+++++.++|||||.+++..
T Consensus       230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            99432          1233457899999999999999987754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=7.3e-16  Score=134.07  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CC-----CCccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FE-----DNHFD  192 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~-----~~~fD  192 (359)
                      .++.+|||||||+|..+..+++.  .+++|+++|+++.+++.|++++...++.++++++++|+.+.. ..     .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            45679999999999999999984  268999999999999999999999998889999999997642 11     47899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +|++...   ..+...+++++.++|||||++++.+...
T Consensus       139 ~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          139 FIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             EEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             EEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            9998764   3467889999999999999999865443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.56  E-value=8.8e-15  Score=126.06  Aligned_cols=109  Identities=22%  Similarity=0.296  Sum_probs=89.7

Q ss_pred             HHHHHhc--CCCCCCEEEEECCCCChHHHHHHhhcC-------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEE
Q 018194          112 EMAVDLI--DVKAGDRILDVGCGVGGPMRAIAAHSR-------ANVVGITINEYQVNRARLHNKKAGL----DSLCEVVC  178 (359)
Q Consensus       112 ~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~~~  178 (359)
                      ..+++.+  .+.++.+|||+|||+|.++..+++..+       .+|+++|+++.+++.++++....+.    ..++++..
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            3445555  467889999999999999999988533       5999999999999999998876541    24799999


Q ss_pred             cCCCCCCCCC-CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          179 GNFLKMPFED-NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       179 ~d~~~~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+.+ ++++ ++||+|++..++++++      +++.+.|||||++++..
T Consensus       152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          152 GDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPV  194 (227)
T ss_dssp             SCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             CCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEE
Confidence            99987 4444 7899999999988875      68899999999999854

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.56  E-value=3.7e-15  Score=129.07  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCC-Cccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---PFED-NHFD  192 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~-~~fD  192 (359)
                      ++.+|||||||+|..+..+++.     ++++|+|+|+|+.+++.|+.      +..+++++++|+.+.   +... .+||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence            4679999999999999999885     46899999999999988761      235799999999884   4333 4799


Q ss_pred             eEEecccccccCCHHHHHHHHHh-ccCCCCEEEEEEe
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFR-VLKPGSLYVSYEW  228 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~-~LkpgG~l~~~~~  228 (359)
                      +|++...  | .+...++.++.+ +|||||++++.+.
T Consensus       155 ~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          155 LIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             EEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             EEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            9998665  3 378899999997 9999999998543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.56  E-value=6.4e-14  Score=123.22  Aligned_cols=136  Identities=15%  Similarity=0.192  Sum_probs=108.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      .+.+.  ..+|.+|||+|||+|.++..+++...++|+++|+||.+++.++++++.+++.++++++++|+.+++ +.+.||
T Consensus       118 ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D  194 (278)
T 3k6r_A          118 RMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIAD  194 (278)
T ss_dssp             HHHHH--CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEE
T ss_pred             HHHHh--cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCC
Confidence            34444  357899999999999999999987667999999999999999999999999999999999998875 357899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCC
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGF  272 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF  272 (359)
                      .|++...    +....++..+.++|||||++.++++.......                     -...+.+.++.++.|+
T Consensus       195 ~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~---------------------~~~~e~i~~~~~~~g~  249 (278)
T 3k6r_A          195 RILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP---------------------REPFETFKRITKEYGY  249 (278)
T ss_dssp             EEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT---------------------TTTHHHHHHHHHHTTC
T ss_pred             EEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeecccccc---------------------hhHHHHHHHHHHHcCC
Confidence            9987643    34557788889999999999887665432111                     1134567788899999


Q ss_pred             eEEE
Q 018194          273 EVVK  276 (359)
Q Consensus       273 ~~i~  276 (359)
                      ++..
T Consensus       250 ~v~~  253 (278)
T 3k6r_A          250 DVEK  253 (278)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.56  E-value=1.2e-14  Score=119.78  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCC
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FED  188 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~  188 (359)
                      .+.++.+|||+|||+|.++..+++.  ++.+++++|+|+ +++.           .++++.++|+.+.+        +++
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCC
Confidence            3678889999999999999999986  357999999999 6532           46899999998876        667


Q ss_pred             CccceEEecccccccCCH-----------HHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCHAPKL-----------EDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ++||+|++...+++..+.           ..+++++.++|+|||.+++..+
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            899999999888877665           7899999999999999998654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.55  E-value=9.8e-15  Score=133.65  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=94.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      .+.+++.+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....++.  +++..+|+.+.+  ++
T Consensus       185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~--~~  260 (343)
T 2pjd_A          185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV--KG  260 (343)
T ss_dssp             HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC--CS
T ss_pred             HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc--cC
Confidence            345666665556789999999999999999985 4569999999999999999999887754  678899987643  67


Q ss_pred             ccceEEecccccc-----cCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCH-----APKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +||+|+++..+++     ..+...+++++.++|||||.+++..
T Consensus       261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            9999999998875     3457899999999999999999864

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.55  E-value=7.2e-15  Score=128.17  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCcc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-----EDNHF  191 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~f  191 (359)
                      .++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|++++...++.++++++.+|+.+. + +     +.++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            45679999999999999999985 3 6899999999999999999999988877899999998763 2 2     15789


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|++...   ..+...+++++.++|||||++++.+
T Consensus       158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            99998754   3467899999999999999998854

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.55  E-value=1.8e-15  Score=147.52  Aligned_cols=107  Identities=22%  Similarity=0.272  Sum_probs=90.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEeccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~  199 (359)
                      .+.+|||||||+|.++..||+. |++|+|||+|+.+++.|+.++.+.+.. +++|.+++++++  ++++++||+|+|..+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            4679999999999999999996 889999999999999999998877632 699999999887  356789999999999


Q ss_pred             ccccCCHH--HHHHHHHhccCCCCEEEEEEeee
Q 018194          200 TCHAPKLE--DVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       200 l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      ++|++|+.  ..+..+.+.|+++|..++..+..
T Consensus       144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            99998865  33556788899998877765433

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.55  E-value=4.2e-15  Score=128.17  Aligned_cols=149  Identities=11%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             HHHhcCCC-CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEE-cCCCCCCCCCC
Q 018194          114 AVDLIDVK-AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL--DSLCEVVC-GNFLKMPFEDN  189 (359)
Q Consensus       114 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~i~~~~-~d~~~~~~~~~  189 (359)
                      +++.+.+. ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++......  ..++.+.. .|+..     .
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~  102 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----G  102 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----C
T ss_pred             HHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----C
Confidence            34444443 5679999999999999999987335999999999999987765332110  01222222 22221     1


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCC----CCCCCHHHHHH
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDAL----PGLRSYAEITE  265 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  265 (359)
                      .||.+.+..++.++   ..++++++++|||||++++..   .+.+...       ...+......    .+..+.+++.+
T Consensus       103 ~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~---~p~~e~~-------~~~~~~~G~~~d~~~~~~~~~~l~~  169 (232)
T 3opn_A          103 RPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI---KPQFEAG-------REQVGKNGIIRDPKVHQMTIEKVLK  169 (232)
T ss_dssp             CCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE---CHHHHSC-------HHHHC-CCCCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE---CcccccC-------HHHhCcCCeecCcchhHHHHHHHHH
Confidence            23444443333333   779999999999999999852   1111110       0001000000    01225678999


Q ss_pred             HHHhCCCeEEEEEec
Q 018194          266 IAKRVGFEVVKEKDL  280 (359)
Q Consensus       266 ~l~~aGF~~i~~~~~  280 (359)
                      +++++||+++.....
T Consensus       170 ~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          170 TATQLGFSVKGLTFS  184 (232)
T ss_dssp             HHHHHTEEEEEEEEC
T ss_pred             HHHHCCCEEEEEEEc
Confidence            999999999887654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.54  E-value=3.4e-14  Score=123.91  Aligned_cols=105  Identities=24%  Similarity=0.363  Sum_probs=84.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCeEEEEcCCCC-CC--CCC
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKA--------GLDSLCEVVCGNFLK-MP--FED  188 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~-~~--~~~  188 (359)
                      .++.+|||||||+|.++..+++. ++..|+|+|+|+.+++.+++++...        ++ .|+.++.+|+.+ ++  ++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence            46789999999999999999985 4579999999999999999988765        55 479999999987 55  667


Q ss_pred             CccceEEecccccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +++|.|+....-.+...        ...+++++.++|+|||.+++.
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            89999986542111100        158999999999999999984

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.53  E-value=5.6e-14  Score=129.91  Aligned_cols=139  Identities=19%  Similarity=0.239  Sum_probs=108.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ....++... ..++.+|||+|||+|.++..++.... ++|+|+|+|+.|++.|++++...++.+++++.++|+.++++++
T Consensus       206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~  284 (373)
T 3tm4_A          206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV  284 (373)
T ss_dssp             HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence            334445555 67889999999999999999998532 3999999999999999999999998778999999999988877


Q ss_pred             CccceEEeccccccc-------CC-HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCH
Q 018194          189 NHFDGAYSIEATCHA-------PK-LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSY  260 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~-------~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (359)
                      ++||+|+++......       .+ ...+++++.++|  ||.++++..                              +.
T Consensus       285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------------------------------~~  332 (373)
T 3tm4_A          285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------------------------------EK  332 (373)
T ss_dssp             SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES------------------------------CH
T ss_pred             CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC------------------------------CH
Confidence            899999997654321       12 267888899988  555554311                              34


Q ss_pred             HHHHHHHHhCCCeEEEEEecC
Q 018194          261 AEITEIAKRVGFEVVKEKDLA  281 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i~~~~~~  281 (359)
                      ..+.+.+++.||+..+...+.
T Consensus       333 ~~~~~~~~~~G~~~~~~~~~~  353 (373)
T 3tm4_A          333 KAIEEAIAENGFEIIHHRVIG  353 (373)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEEEE
Confidence            577788999999998876653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.53  E-value=5.2e-14  Score=124.70  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----C
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----E  187 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~  187 (359)
                      +...+...++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.++++....++. +++++++|+.+++.    .
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~  153 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKN  153 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHT
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhc
Confidence            345567788999999999999999999984 34 79999999999999999999988875 79999999987653    2


Q ss_pred             CCccceEEecccc------c------------ccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEAT------C------------HAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l------~------------~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .++||+|++....      .            .......+++++.++|||||++++..
T Consensus       154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5789999986221      1            11356789999999999999998864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.53  E-value=2.4e-13  Score=125.82  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=101.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC-CCCccceEEe
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPF-EDNHFDGAYS  196 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~v~~  196 (359)
                      ..++.+|||+| |+|.++..++.. +..+|+++|+|+.+++.|+++++..++. +++++++|+.+ ++. .+++||+|++
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEE
Confidence            34678999999 999999999885 3369999999999999999999988876 89999999988 653 3468999999


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCH---HHHHHHHH-hCCC
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSY---AEITEIAK-RVGF  272 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~aGF  272 (359)
                      +..++.. ....+++++.++|||||++++++....                         ..+.   ..+.+.++ +.||
T Consensus       248 ~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~g~  301 (373)
T 2qm3_A          248 DPPETLE-AIRAFVGRGIATLKGPRCAGYFGITRR-------------------------ESSLDKWREIQKLLLNEFNV  301 (373)
T ss_dssp             CCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECTT-------------------------TCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCchH-HHHHHHHHHHHHcccCCeEEEEEEecC-------------------------cCCHHHHHHHHHHHHHhcCc
Confidence            8765433 358899999999999996544332210                         0122   45667777 8999


Q ss_pred             eEEEE
Q 018194          273 EVVKE  277 (359)
Q Consensus       273 ~~i~~  277 (359)
                      .....
T Consensus       302 ~~~~~  306 (373)
T 2qm3_A          302 VITDI  306 (373)
T ss_dssp             EEEEE
T ss_pred             chhhh
Confidence            87654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.53  E-value=1.8e-14  Score=125.11  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=90.3

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--------
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P--------  185 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~--------  185 (359)
                      .+...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|++++...++.+++++..+|+.+. +        
T Consensus        55 l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~  134 (239)
T 2hnk_A           55 LTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSA  134 (239)
T ss_dssp             HHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred             HHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccc
Confidence            3344567899999999999999999863  5799999999999999999999888776799999998652 2        


Q ss_pred             ------CCC--CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 ------FED--NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 ------~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                            +++  ++||+|++...   .++...+++++.++|||||++++.+.
T Consensus       135 ~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          135 PSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                  222  78999998754   34667899999999999999998653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.52  E-value=1.8e-13  Score=129.68  Aligned_cols=117  Identities=17%  Similarity=0.338  Sum_probs=95.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FE  187 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  187 (359)
                      ..+...+...++.+|||+|||+|..+..+++. .+ .+|+++|+|+.+++.++++....|+. +++++++|+.+.+  ++
T Consensus       249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~  327 (450)
T 2yxl_A          249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEIIG  327 (450)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSSC
T ss_pred             HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhhc
Confidence            34455667889999999999999999999985 33 69999999999999999999988874 7999999998876  55


Q ss_pred             CCccceEEe------cccccccCCH----------------HHHHHHHHhccCCCCEEEEEEee
Q 018194          188 DNHFDGAYS------IEATCHAPKL----------------EDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       188 ~~~fD~v~~------~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      +++||+|++      ..++.+.++.                ..+++++.++|||||++++.+..
T Consensus       328 ~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          328 EEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             SSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             cCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            578999996      2344444443                57899999999999999986543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=6.9e-14  Score=123.72  Aligned_cols=107  Identities=15%  Similarity=0.046  Sum_probs=92.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      .+.++.+|||+|||+|.++..+++. ..++|+++|+|+.+++.|+++++..++. ++.++++|+.+.+. .++||+|++.
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d  193 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMG  193 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEEC
Confidence            4567899999999999999999986 3569999999999999999999988875 68999999988743 5789999987


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEEEeeeC
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT  231 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  231 (359)
                      ...    +...++.++.+.|||||++++.++...
T Consensus       194 ~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          194 YVH----KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             CCS----SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             Ccc----cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            653    677889999999999999998776553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.52  E-value=2.3e-14  Score=123.89  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCC--Cccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFED--NHFD  192 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~--~~fD  192 (359)
                      .++.+|||||||+|..+..+++..  +.+|+++|+|+.+++.|++++...++.++++++.+|+.+.    +..+  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            356799999999999999999853  5799999999999999999999888877899999997542    2223  7899


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      +|++...   .++...+++++.++|+|||++++.+..
T Consensus       151 ~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          151 LIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9998754   346788999999999999999986543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.51  E-value=1.4e-14  Score=132.11  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=81.9

Q ss_pred             CCCEEEEECCC------CChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------
Q 018194          122 AGDRILDVGCG------VGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE------  187 (359)
Q Consensus       122 ~~~~vLDiGcG------~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------  187 (359)
                      ++.+|||||||      +|..+..+++.  ++++|+|+|+|+.|..          ..++++++++|+.++++.      
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARR  285 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhcc
Confidence            46899999999      77777777763  6789999999999831          135899999999998766      


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      +++||+|++.. .++..+...+|++++++|||||++++.++..
T Consensus       286 d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          286 YGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             HCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             cCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            68999999875 4667789999999999999999999987653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.51  E-value=2.4e-14  Score=123.36  Aligned_cols=107  Identities=17%  Similarity=0.202  Sum_probs=89.7

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCC----Ccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFED----NHF  191 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~----~~f  191 (359)
                      ..++.+|||+|||+|..+..+++. + +.+|+++|+|+.+++.+++++...++..+++++++|+.+.  .++.    ++|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            346789999999999999999985 3 5799999999999999999999988877899999998653  1211    689


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      |+|++...   ..+...+++++.++|+|||.+++.+..
T Consensus       147 D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          147 DVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             cEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            99998654   346788999999999999999986543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.49  E-value=3.9e-14  Score=122.78  Aligned_cols=104  Identities=12%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCcc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-F-----EDNHF  191 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~f  191 (359)
                      .++.+|||||||+|..+..+++. + +.+|+++|+|+.+++.|+++++..++.++++++++|+.+. + +     +.++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            45679999999999999999985 3 6899999999999999999999988877899999998763 2 2     25789


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|++...   ..+...+++++.++|||||.+++.+
T Consensus       149 D~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          149 DFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99998643   3467889999999999999998754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=1.2e-13  Score=123.05  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+..++++++++|+.+.+++ 
T Consensus        15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-   92 (285)
T 1zq9_A           15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-   92 (285)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-
Confidence            44566777888888999999999999999999986 5699999999999999999887665546899999999987654 


Q ss_pred             CccceEEecccccccCCH-HHHH--------------HHH--HhccCCCCEEE
Q 018194          189 NHFDGAYSIEATCHAPKL-EDVY--------------AEV--FRVLKPGSLYV  224 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~-~~~l--------------~~~--~~~LkpgG~l~  224 (359)
                       +||+|+++...+...+. ..++              +++  +++++|||.++
T Consensus        93 -~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 -FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             -CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             -hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence             79999997544332211 1222              223  46899999864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.49  E-value=1.3e-13  Score=116.21  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHS---RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----------  185 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------  185 (359)
                      +.++.+|||+|||+|.++..+++..   +++|+|+|+|+..           . .++++++++|+.+.+           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-IPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-CTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-CCCceEEEccccchhhhhhccccccc
Confidence            5678899999999999999999853   4799999999831           1 246899999998876           


Q ss_pred             --------------CCCCccceEEeccccccc----CCH-------HHHHHHHHhccCCCCEEEEEE
Q 018194          186 --------------FEDNHFDGAYSIEATCHA----PKL-------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 --------------~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                                    +++++||+|++..++++.    .+.       ..+++++.++|||||.+++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                          566799999998877653    222       247899999999999998743

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.48  E-value=2.1e-12  Score=109.27  Aligned_cols=128  Identities=13%  Similarity=0.083  Sum_probs=98.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....++  +++++++|+.+++   ++||+|+++.
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~  120 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNP  120 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECC
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcC
Confidence            4557889999999999999999986335899999999999999999887766  6999999998864   4899999988


Q ss_pred             cccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          199 ATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       199 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      .+++..  ....+++++.+++  |+. ++.....        ..                  +.+.+.+.+++.||++..
T Consensus       121 p~~~~~~~~~~~~l~~~~~~l--~~~-~~~~~~~--------~~------------------~~~~~~~~l~~~g~~~~~  171 (207)
T 1wy7_A          121 PFGSQRKHADRPFLLKAFEIS--DVV-YSIHLAK--------PE------------------VRRFIEKFSWEHGFVVTH  171 (207)
T ss_dssp             CCSSSSTTTTHHHHHHHHHHC--SEE-EEEEECC--------HH------------------HHHHHHHHHHHTTEEEEE
T ss_pred             CCccccCCchHHHHHHHHHhc--CcE-EEEEeCC--------cC------------------CHHHHHHHHHHCCCeEEE
Confidence            776654  3467889999988  544 3322100        00                  124566788999998876


Q ss_pred             EEec
Q 018194          277 EKDL  280 (359)
Q Consensus       277 ~~~~  280 (359)
                      ....
T Consensus       172 ~~~~  175 (207)
T 1wy7_A          172 RLTT  175 (207)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.46  E-value=1.1e-12  Score=110.60  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++..      +++++++|+.+++   ++||+|+++.
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~  118 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNP  118 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECC
Confidence            455788999999999999999998733479999999999999998754      5899999998864   6899999999


Q ss_pred             cccccCC--HHHHHHHHHhcc
Q 018194          199 ATCHAPK--LEDVYAEVFRVL  217 (359)
Q Consensus       199 ~l~~~~~--~~~~l~~~~~~L  217 (359)
                      .+++..+  ...+++++.+++
T Consensus       119 p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          119 PFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CC-------CHHHHHHHHHHE
T ss_pred             CchhccCchhHHHHHHHHHhc
Confidence            9988864  357899999988

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.45  E-value=2.5e-13  Score=125.95  Aligned_cols=107  Identities=11%  Similarity=0.067  Sum_probs=86.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC-C-C--CCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKM-P-F--EDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~-~-~--~~~~fD~v~  195 (359)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.|+++++..++.+ +++++++|+.+. + .  ...+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            5678999999999999999998533499999999999999999999988866 899999998763 2 1  245899999


Q ss_pred             ecccc-----cccC----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEAT-----CHAP----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l-----~~~~----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.-..     .+..    +...++..+.++|+|||.+++..
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~  331 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  331 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            85433     1222    35567888899999999998854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.45  E-value=2.2e-13  Score=128.17  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=91.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCC
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDN  189 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  189 (359)
                      .+...+...++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.++++++..|+.  +.++++|+.+++ ...+
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~  169 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGT  169 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCS
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccc
Confidence            34556678899999999999999999999752  369999999999999999999999876  899999987765 2457


Q ss_pred             ccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +||+|++.-      ++.+.++                ...+|+++.++|||||+++...
T Consensus       170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            899999621      2222222                2679999999999999999764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.45  E-value=2.5e-12  Score=121.16  Aligned_cols=132  Identities=23%  Similarity=0.334  Sum_probs=100.6

Q ss_pred             CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194           89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      +-.+.+.+...........+.+.+.+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3444555543333335556677777888888888899999999999999999987 679999999999999999999888


Q ss_pred             CCCCCeEEEEcCCCC----CCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          169 GLDSLCEVVCGNFLK----MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       169 ~~~~~i~~~~~d~~~----~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++. +++|+++|+.+    +++++++||+|++.-.-..   ...+++.+.+ ++|++.+++.
T Consensus       332 ~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g---~~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          332 GLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             TCC-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHH-HCCSEEEEEE
T ss_pred             CCC-ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc---HHHHHHHHHh-cCCCeEEEEE
Confidence            875 89999999987    2345678999998643222   2345555554 7898888763

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.45  E-value=8.9e-13  Score=125.14  Aligned_cols=114  Identities=16%  Similarity=0.205  Sum_probs=91.5

Q ss_pred             HHhcCCC--CCCEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCC
Q 018194          115 VDLIDVK--AGDRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDN  189 (359)
Q Consensus       115 ~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~  189 (359)
                      ...+...  ++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.++++++..|+. ++.++++|+.+++. ..+
T Consensus       108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~  186 (479)
T 2frx_A          108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPE  186 (479)
T ss_dssp             HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTT
T ss_pred             HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccc
Confidence            3455566  89999999999999999999853  379999999999999999999998875 79999999988653 457


Q ss_pred             ccceEEec------ccccccCC----------------HHHHHHHHHhccCCCCEEEEEEee
Q 018194          190 HFDGAYSI------EATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       190 ~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      +||+|++.      .++.+.++                ...+|+++.++|||||++++....
T Consensus       187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            89999973      12222222                247899999999999999986543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.44  E-value=2.4e-13  Score=123.28  Aligned_cols=107  Identities=20%  Similarity=0.337  Sum_probs=85.3

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCccce
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKM--PFEDNHFDG  193 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~fD~  193 (359)
                      ...+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++...  ++ .++++++++|+.+.  ..++++||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            4556899999999999999999863 579999999999999999987652  33 35799999998763  234578999


Q ss_pred             EEecccccc--cCC--HHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEATCH--APK--LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~--~~~--~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |++......  ..+  ...+++++.++|+|||++++.
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            998654211  111  478999999999999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.44  E-value=4.9e-13  Score=124.72  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=88.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCCC----CCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-DSLCEVVCGNFLKMPF----EDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~----~~~~fD~v~  195 (359)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++ .++++++++|+.+...    ..++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            46789999999999999999986445999999999999999999998887 5589999999977421    146899999


Q ss_pred             ecccc---------cccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEAT---------CHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.-..         ....+...++.++.++|+|||.+++..
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  339 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS  339 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            96422         223467889999999999999998864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.44  E-value=2.9e-13  Score=120.87  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=84.2

Q ss_pred             CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEeccc
Q 018194          123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAYSIEA  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~  199 (359)
                      ..+|||||||+|.+++.+++ +++.+|+++|+++.+++.|++++.... .++++++++|+.+.  .+++++||+|++...
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            34999999999999999998 578899999999999999999875322 35899999998764  244679999998643


Q ss_pred             cccc-C---CHHHHHHHHHhccCCCCEEEEEE
Q 018194          200 TCHA-P---KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       200 l~~~-~---~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .... +   ...+++++++++|+|||++++..
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            3221 1   13689999999999999998854

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.43  E-value=7.3e-13  Score=110.73  Aligned_cols=97  Identities=15%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--------C---
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF--------E---  187 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~---  187 (359)
                      -+.++.+|||+|||+|.++..+++. +.+|+|+|+++..           . .++++++++|+.+.+.        .   
T Consensus        22 ~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~-~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           22 VVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------E-IAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------C-CTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------c-CCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            3568899999999999999999987 7899999999752           1 2479999999988642        1   


Q ss_pred             CCccceEEecccccccC-----------CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          188 DNHFDGAYSIEATCHAP-----------KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~-----------~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      .++||+|++........           ....+++.+.++|||||.+++..+
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            14899999975432211           135788999999999999997543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.43  E-value=3.9e-13  Score=126.29  Aligned_cols=141  Identities=13%  Similarity=0.127  Sum_probs=105.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~  188 (359)
                      ..+...+...++.+|||+|||+|..+..+++.  ...+|+++|+|+.+++.++++++..|+. ++.++++|+.+++ ..+
T Consensus        95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~  173 (456)
T 3m4x_A           95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFS  173 (456)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhcc
Confidence            34455667889999999999999999999985  2369999999999999999999999885 7999999987754 235


Q ss_pred             CccceEEeccc------ccccCC----------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHh
Q 018194          189 NHFDGAYSIEA------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ  246 (359)
Q Consensus       189 ~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  246 (359)
                      ++||+|++.-.      +..-++                ...+|.++.++|||||+++........   .          
T Consensus       174 ~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~---e----------  240 (456)
T 3m4x_A          174 GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP---E----------  240 (456)
T ss_dssp             TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG---G----------
T ss_pred             ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc---c----------
Confidence            78999997432      111111                237899999999999999876433221   0          


Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          247 GIERGDALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                                 .....+...|++.||+++..
T Consensus       241 -----------Ene~vv~~~l~~~~~~l~~~  260 (456)
T 3m4x_A          241 -----------ENEEIISWLVENYPVTIEEI  260 (456)
T ss_dssp             -----------GTHHHHHHHHHHSSEEEECC
T ss_pred             -----------cCHHHHHHHHHhCCCEEEec
Confidence                       12345667778888766544

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.43  E-value=5.2e-14  Score=124.29  Aligned_cols=109  Identities=15%  Similarity=0.061  Sum_probs=79.2

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEE--EcCCCCCCCCCCc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK-KAGLDSLCEVV--CGNFLKMPFEDNH  190 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~~~  190 (359)
                      +.+...+.++.+|||+|||+|.++..+++.  .+|+|+|+|+ |+..+++... ......++.++  ++|+.+++  +++
T Consensus        74 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~  148 (276)
T 2wa2_A           74 IDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQ  148 (276)
T ss_dssp             HHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCC
T ss_pred             HHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCC
Confidence            334445668899999999999999999987  6999999998 5433221100 00111268999  99998865  679


Q ss_pred             cceEEecccccccCCH----H---HHHHHHHhccCCCC--EEEEEEe
Q 018194          191 FDGAYSIEATCHAPKL----E---DVYAEVFRVLKPGS--LYVSYEW  228 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~----~---~~l~~~~~~LkpgG--~l~~~~~  228 (359)
                      ||+|++..+ ++..++    .   .+|+++.++|||||  .+++..+
T Consensus       149 fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          149 ADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             cCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            999999877 444332    1   47899999999999  8887443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.42  E-value=6.8e-13  Score=111.27  Aligned_cols=98  Identities=16%  Similarity=0.208  Sum_probs=76.1

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCCCC--
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSR----------ANVVGITINEYQVNRARLHNKKAGLDSLCEVV-CGNFLKMP--  185 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~--  185 (359)
                      .+.++.+|||+|||+|.++..+++..+          .+|+|+|+|+.+           .+ .++++. .+|+.+.+  
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~   86 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTS   86 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHH
Confidence            356789999999999999999998633          799999999842           11 368899 99987643  


Q ss_pred             ------CCCCccceEEecccccc----cCCH-------HHHHHHHHhccCCCCEEEEEEe
Q 018194          186 ------FEDNHFDGAYSIEATCH----APKL-------EDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 ------~~~~~fD~v~~~~~l~~----~~~~-------~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                            +++++||+|++..+++.    ..+.       ..+++++.++|||||++++..+
T Consensus        87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                  34568999999765443    2233       4889999999999999998654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.42  E-value=6.1e-14  Score=123.15  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=78.0

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEE--EcCCCCCCCCCCccc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK-KAGLDSLCEVV--CGNFLKMPFEDNHFD  192 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~i~~~--~~d~~~~~~~~~~fD  192 (359)
                      +...+.++.+|||||||+|.++..+++.  .+|+|+|+++ |+..+++... ......++.++  ++|+.+++  +++||
T Consensus        68 ~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           68 ERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             HHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             HcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence            3345678899999999999999999987  6999999998 5332211100 00011168999  99998865  67999


Q ss_pred             eEEecccccccCCH----H---HHHHHHHhccCCCC--EEEEEEe
Q 018194          193 GAYSIEATCHAPKL----E---DVYAEVFRVLKPGS--LYVSYEW  228 (359)
Q Consensus       193 ~v~~~~~l~~~~~~----~---~~l~~~~~~LkpgG--~l~~~~~  228 (359)
                      +|+|..+ ++..++    .   .+|..+.++|||||  .+++-.+
T Consensus       143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            9999877 544332    1   37899999999999  8887443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.42  E-value=2e-13  Score=122.38  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=83.8

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCC-CCCCCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK--AGL-DSLCEVVCGNFLK-MPFEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~-~~~~~~~fD~v  194 (359)
                      ...+.+|||||||+|..+..++++ +..+|+++|+|+.+++.|++++..  .++ .++++++.+|+.+ ++..+++||+|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            345689999999999999999986 347999999999999999998765  233 4689999999876 23345789999


Q ss_pred             EecccccccC----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++.......+    ....+++++.++|+|||++++..
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            9865432221    13578999999999999999853

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.41  E-value=4.7e-13  Score=118.43  Aligned_cols=105  Identities=20%  Similarity=0.287  Sum_probs=84.3

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      .+.+|||||||+|.+++.++++. ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+. +...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            56799999999999999999873 479999999999999999987542  23 35899999998763 334578999999


Q ss_pred             cccccccCC----HHHHHHHHHhccCCCCEEEEE
Q 018194          197 IEATCHAPK----LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       197 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .......+.    ..++++++.++|||||.+++.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            654322221    368999999999999999874

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.41  E-value=1.1e-12  Score=123.43  Aligned_cols=115  Identities=21%  Similarity=0.301  Sum_probs=94.2

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FED  188 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~  188 (359)
                      ..+...+...++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++....++  +++++++|+.+.+  +++
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~  313 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGE  313 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTT
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhccc
Confidence            445556678899999999999999999999853 37999999999999999999998876  3799999998875  556


Q ss_pred             CccceEEec------ccccccCCH----------------HHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSI------EATCHAPKL----------------EDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~------~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ++||+|++.      .++.+.++.                ..+++++.++|||||++++.+.
T Consensus       314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            789999963      233444442                4789999999999999998653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.40  E-value=3.2e-13  Score=121.81  Aligned_cols=106  Identities=22%  Similarity=0.257  Sum_probs=85.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCCeEEEEcCCCCC-CCCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK--AG-L-DSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      .++.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++..  .+ + .++++++.+|+.+. +..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            35689999999999999999986 457999999999999999998764  22 2 35899999998763 3346789999


Q ss_pred             Eecccccc---cC--C--HHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCH---AP--K--LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~---~~--~--~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++....+.   -+  .  ...+++++.++|||||.+++.
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            99765543   11  1  478999999999999999985

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.40  E-value=1.9e-13  Score=122.98  Aligned_cols=106  Identities=24%  Similarity=0.347  Sum_probs=81.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKM-PFEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~-~~~~~~fD~v~  195 (359)
                      ..+.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+. +..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            34579999999999999999986 4579999999999999999987643  33 46899999998763 33457899999


Q ss_pred             ecccccccCC--H--HHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHAPK--L--EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~~~--~--~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...-+..+.  .  ..+++++.++|+|||++++.
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~  221 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  221 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence            8653222121  1  68999999999999999984

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.39  E-value=4.5e-13  Score=119.84  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK--AGL-DSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      .+.+|||||||+|..+..+++. +..+|+++|+|+.+++.+++++..  .++ .++++++.+|+.+. +...++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999986 457999999999999999998754  223 35899999998662 334578999998


Q ss_pred             cccccccC-----CHHHHHHHHHhccCCCCEEEEE
Q 018194          197 IEATCHAP-----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       197 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...-.+..     ....+++++.++|||||++++.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            54321011     2378999999999999999984

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=1.7e-12  Score=120.17  Aligned_cols=144  Identities=19%  Similarity=0.193  Sum_probs=101.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~  199 (359)
                      .+|.+|||+|||+|.++..+++. ++.|+++|+|+.+++.++++++..++..  .+.++|+.+.. ...+.||+|++.-.
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP  289 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP  289 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred             cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence            36899999999999999999986 6779999999999999999999888763  56689987642 11344999998643


Q ss_pred             ccc---------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhC
Q 018194          200 TCH---------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRV  270 (359)
Q Consensus       200 l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  270 (359)
                      ...         ..+...++..+.++|||||++++........     .  ..+               ...+.+.+.++
T Consensus       290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~-----~--~~f---------------~~~v~~a~~~~  347 (393)
T 4dmg_A          290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR-----L--EDL---------------LEVARRAAADL  347 (393)
T ss_dssp             CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----H--HHH---------------HHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-----H--HHH---------------HHHHHHHHHHh
Confidence            211         1245688999999999999998754322110     0  000               13456677778


Q ss_pred             CCeEEEEEecCCCCCCchh
Q 018194          271 GFEVVKEKDLAKPPAQPWW  289 (359)
Q Consensus       271 GF~~i~~~~~~~~~~~~w~  289 (359)
                      |.+.........++..|+.
T Consensus       348 g~~~~i~~~~~~~~DhP~~  366 (393)
T 4dmg_A          348 GRRLRVHRVTYQPEDHPWS  366 (393)
T ss_dssp             TCCEEEEEEEECCTTSCEE
T ss_pred             CCeEEEEEEcCCCCCCCcC
Confidence            8776665555544433443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.39  E-value=3e-13  Score=122.25  Aligned_cols=106  Identities=24%  Similarity=0.321  Sum_probs=83.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKK--AGL-DSLCEVVCGNFLKM-PFEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~-~~~~~~fD~v~  195 (359)
                      .++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..  .++ .++++++++|+.+. +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            35689999999999999999986 457999999999999999998764  122 35799999998663 22357899999


Q ss_pred             eccccccc--CCH--HHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHA--PKL--EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~--~~~--~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...-..-  ...  ..+++++.++|||||++++.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            86532111  111  78999999999999999984

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.39  E-value=8.1e-13  Score=122.62  Aligned_cols=104  Identities=22%  Similarity=0.256  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----EDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~v~~~  197 (359)
                      ++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++++...++.+ ++++++|+.+...    ..++||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6789999999999999999987 6799999999999999999999888764 9999999977431    15689999985


Q ss_pred             cccc---------ccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          198 EATC---------HAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       198 ~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -...         ...+...++.++.++|+|||.+++..
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  325 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  325 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4221         11346789999999999999999864

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=2.5e-12  Score=117.16  Aligned_cols=101  Identities=13%  Similarity=0.104  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.+++++...++.++++++++|+.+..   ++||+|++....
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~  268 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK  268 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence            4788999999999999999 88 467999999999999999999999988778999999998865   789999986321


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                          ....++..+.++|+|||.+++.++..
T Consensus       269 ----~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          269 ----FAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             ----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             ----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence                23478899999999999999876543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.38  E-value=3e-13  Score=120.14  Aligned_cols=104  Identities=23%  Similarity=0.353  Sum_probs=82.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCCeEEEEcCCCCC-CCCCC
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA--GL--------DSLCEVVCGNFLKM-PFEDN  189 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~-~~~~~  189 (359)
                      .++.+|||||||+|.++..+++.+..+|+++|+|+.+++.|++++ ..  ++        .++++++.+|+.+. +. ++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            456899999999999999999874469999999999999999987 33  22        46899999998653 22 57


Q ss_pred             ccceEEecccccccC--C--HHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAP--K--LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||+|++....+..+  .  ...+++++.++|+|||++++.
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            899999865432211  1  368899999999999999885

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.38  E-value=4.9e-13  Score=124.76  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEe
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----EDNHFDGAYS  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~v~~  196 (359)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.|++++...++.++++++++|+.+...    ..++||+|++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            478899999999999999999863359999999999999999999988876689999999877431    2568999999


Q ss_pred             ccccc---------ccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          197 IEATC---------HAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       197 ~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .-...         +..+...++.++.++|+|||.+++..
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  335 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  335 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            54321         12356789999999999999998864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.37  E-value=6.5e-12  Score=107.40  Aligned_cols=141  Identities=9%  Similarity=0.097  Sum_probs=103.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      .+...+  .+..+|||||||+|-++..++.. +..+|+++|+++.+++.+++++...|+.  .++.+.|...-+ +.+.|
T Consensus       125 ~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-p~~~~  199 (281)
T 3lcv_B          125 ELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-LDEPA  199 (281)
T ss_dssp             HHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-CCSCC
T ss_pred             HHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-CCCCc
Confidence            344444  34679999999999999988874 6789999999999999999999988865  788999987754 56889


Q ss_pred             ceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHh
Q 018194          192 DGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       192 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  269 (359)
                      |++++.-+++|+++.  ...+ ++...|+|+|.++-.+.   .........+....              ...|.+.+.+
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~---ksl~Grs~gm~~~Y--------------~~~~e~~~~~  261 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT---KSLGQRSKGMFQNY--------------SQSFESQARE  261 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC---C-------CHHHHH--------------HHHHHHHHHH
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc---hhhcCCCcchhhHH--------------HHHHHHHHHh
Confidence            999999999999753  2455 89999999999986542   11111222222211              2467778888


Q ss_pred             CCCeEEE
Q 018194          270 VGFEVVK  276 (359)
Q Consensus       270 aGF~~i~  276 (359)
                      .|..+.+
T Consensus       262 ~g~~~~~  268 (281)
T 3lcv_B          262 RSCRIQR  268 (281)
T ss_dssp             HTCCEEE
T ss_pred             cCCceee
Confidence            8885433

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.37  E-value=7.7e-13  Score=117.57  Aligned_cols=107  Identities=23%  Similarity=0.317  Sum_probs=84.8

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC-CCCCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG--L-DSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      ..++.+|||||||+|.++..+++. +..+|+++|+++.+++.+++++...+  + .++++++.+|+.+. +...++||+|
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            345689999999999999999986 35799999999999999999875431  1 35799999998763 2235789999


Q ss_pred             EecccccccC--CH--HHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAP--KL--EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~--~~--~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++.....+.+  ..  ..+++++.++|+|||.+++.
T Consensus       156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            9965433222  22  68999999999999999974

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.36  E-value=4.3e-12  Score=113.63  Aligned_cols=89  Identities=20%  Similarity=0.274  Sum_probs=71.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.++..+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....++ ++++++++|+.+.++  
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--  104 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--  104 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--
Confidence            34566777778888999999999999999999986 57999999999999999999877665 579999999988765  


Q ss_pred             CccceEEeccccc
Q 018194          189 NHFDGAYSIEATC  201 (359)
Q Consensus       189 ~~fD~v~~~~~l~  201 (359)
                      .+||+|+++...+
T Consensus       105 ~~~D~Vv~n~py~  117 (299)
T 2h1r_A          105 PKFDVCTANIPYK  117 (299)
T ss_dssp             CCCSEEEEECCGG
T ss_pred             ccCCEEEEcCCcc
Confidence            4899999975543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.36  E-value=1.6e-12  Score=129.13  Aligned_cols=105  Identities=11%  Similarity=0.114  Sum_probs=88.3

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-CCCCCccceEEeccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKM-PFEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~v~~~~~  199 (359)
                      ++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++..++. .+++++++|+.+. +...++||+|++.-.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            58899999999999999998853347999999999999999999999886 5899999999873 334578999998542


Q ss_pred             -----------ccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          200 -----------TCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 -----------l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                                 +....+...++..+.++|+|||++++.
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s  656 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS  656 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                       233346778999999999999999974

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.36  E-value=7.3e-12  Score=114.57  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=87.4

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSR------ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      ...++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.+....++  ++.+.++|+... .+.++||
T Consensus       127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~-~~~~~fD  203 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLAN-LLVDPVD  203 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSC-CCCCCEE
T ss_pred             CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCc-cccCCcc
Confidence            445678999999999999998887532      6899999999999999999887776  589999998763 3457899


Q ss_pred             eEEecccccccCCH------------------HHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKL------------------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~------------------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+++-.+.++++.                  ..++.++.+.|||||+++++.
T Consensus       204 ~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~  256 (344)
T 2f8l_A          204 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  256 (344)
T ss_dssp             EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence            99999887665432                  258999999999999998864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.35  E-value=6.7e-13  Score=116.36  Aligned_cols=97  Identities=9%  Similarity=-0.067  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA--GL-DSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      ..+.+|||||||+|..++.+++++ .+|+++|+++.+++.|++++...  ++ .++++++.+|+.+..   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            356799999999999999999884 89999999999999998765321  11 357999999998754   789999986


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                           .+++..+++++.++|||||.+++.
T Consensus       147 -----~~dp~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          147 -----QEPDIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             -----SCCCHHHHHHHHTTEEEEEEEEEE
T ss_pred             -----CCChHHHHHHHHHhcCCCcEEEEE
Confidence                 346667999999999999999884

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.34  E-value=2.6e-12  Score=113.70  Aligned_cols=118  Identities=14%  Similarity=0.111  Sum_probs=86.6

Q ss_pred             hcCCCCCCEEEEECCCC------ChHHHHHHhh-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcCCCCCCCC
Q 018194          117 LIDVKAGDRILDVGCGV------GGPMRAIAAH-S-RANVVGITINEYQVNRARLHNKKAGLDSLCEV-VCGNFLKMPFE  187 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~------G~~~~~l~~~-~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~~~~  187 (359)
                      .+.++++.+|||+|||+      |.  ..+++. + +.+|+|+|+|+. +             .++++ +++|+.+++++
T Consensus        58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------------CSSSEEEESCGGGCCCS
T ss_pred             hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------------CCCEEEEECccccCCcc
Confidence            45678899999999955      55  444443 2 479999999987 1             25889 99999987654


Q ss_pred             CCccceEEecccccc-----------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCC
Q 018194          188 DNHFDGAYSIEATCH-----------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPG  256 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (359)
                       ++||+|+++...+.           ......+++++.++|||||++++..+...                         
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-------------------------  175 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-------------------------  175 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-------------------------
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-------------------------
Confidence             68999999754221           11245899999999999999998532211                         


Q ss_pred             CCCHHHHHHHHHhCCCeEEEEE
Q 018194          257 LRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       257 ~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                        ...++.++|++.||..++..
T Consensus       176 --~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          176 --WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             --CCHHHHHHHTTEEEEEEEEE
T ss_pred             --CHHHHHHHHHHcCCcEEEEE
Confidence              12477888999999877664

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.34  E-value=9.4e-12  Score=105.42  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||||||+|.++..+.  ++.+|+++|+|+.+++.+++.....+  .+..+..+|....+++ ++||+|++.-++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~-~~~DvvLllk~l  178 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPA-EAGDLALIFKLL  178 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCC-CCcchHHHHHHH
Confidence            567799999999999999887  67899999999999999999988776  3579999999887655 589999999999


Q ss_pred             cccCC-HHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHAPK-LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~~-~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+.+ .....-++...|+++|.++-..
T Consensus       179 h~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          179 PLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            98863 2233338888999998887643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.32  E-value=3.7e-10  Score=103.22  Aligned_cols=211  Identities=14%  Similarity=0.037  Sum_probs=119.5

Q ss_pred             CCEEEEECCCCChHHHHHHh--------h--------cCCEEEEEeCCHHHHHHHHHHHHHcC-----------C--CC-
Q 018194          123 GDRILDVGCGVGGPMRAIAA--------H--------SRANVVGITINEYQVNRARLHNKKAG-----------L--DS-  172 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~~~-----------~--~~-  172 (359)
                      ..+|+|+|||+|..+..+..        .        +..+|...|+..+.....=+......           .  ++ 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57999999999998877621        1        35688888987665443322222110           0  00 


Q ss_pred             CeEEEEcCCCCCCCCCCccceEEecccccccC--------------------------------------CHHHHHHHHH
Q 018194          173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--------------------------------------KLEDVYAEVF  214 (359)
Q Consensus       173 ~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--------------------------------------~~~~~l~~~~  214 (359)
                      -+.-+.+.+..-.+|+++||+|+++.+|||+.                                      |+..+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223344444458899999999999999986                                      3445788999


Q ss_pred             hccCCCCEEEEEEeeeCcccccCch--------HHHHHHhhhhc----------CCCCC-CCCCHHHHHHHHH-hCCCeE
Q 018194          215 RVLKPGSLYVSYEWVTTDKYEAENK--------EHVDIIQGIER----------GDALP-GLRSYAEITEIAK-RVGFEV  274 (359)
Q Consensus       215 ~~LkpgG~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~l~-~aGF~~  274 (359)
                      +.|+|||++++.-....+.......        .....+..+..          ....| .+.+.+++.++++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            9999999999976555432111100        11111211111          11223 3578999999998 599999


Q ss_pred             EEEEecCCCCCCchhhhh-hccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Q 018194          275 VKEKDLAKPPAQPWWTRL-KMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLT  334 (359)
Q Consensus       275 i~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  334 (359)
                      ...+.+..+. .++.... .....++.+...+..+.+.+-....+..-+.++..+..+.+.
T Consensus       293 ~~le~~~~~~-~~~~~~~~~~~~~g~~~a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~~  352 (374)
T 3b5i_A          293 DKLVVYKGGS-PLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRAT  352 (374)
T ss_dssp             EEEEEEECCC-CCCCSSTTCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecC-CccccccchhHHHHHHHHHHHHHhccchhHhhccHHHHHHHHHHHHHHHH
Confidence            8877664321 1111110 112233334344444455554444454444444444444443

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.31  E-value=1.2e-12  Score=113.75  Aligned_cols=84  Identities=14%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++...   .++++++++|+.++++++
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHHhCCccc
Confidence            45566778888888999999999999999999987 47999999999999999988753   247999999999988764


Q ss_pred             -CccceEEec
Q 018194          189 -NHFDGAYSI  197 (359)
Q Consensus       189 -~~fD~v~~~  197 (359)
                       ..| .|+++
T Consensus        93 ~~~~-~vv~n  101 (244)
T 1qam_A           93 NQSY-KIFGN  101 (244)
T ss_dssp             SCCC-EEEEE
T ss_pred             CCCe-EEEEe
Confidence             345 34444

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.30  E-value=4.6e-11  Score=111.86  Aligned_cols=127  Identities=18%  Similarity=0.176  Sum_probs=92.1

Q ss_pred             CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194           89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      +-.+.+.+...........+.+.+.+..   +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...
T Consensus       260 g~~f~~~~~~F~q~n~~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~n  335 (425)
T 2jjq_A          260 DVDYLIHPNSFFQTNSYQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEIN  335 (425)
T ss_dssp             TEEEEECTTSCCCSBHHHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CEEEEEccccccccCHHHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            3344444433333223444445555555   456789999999999999999986 579999999999999999999888


Q ss_pred             CCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          169 GLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       169 ~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++.  ++|+.+|+.+...  .+||+|++.-.-...  ...+++.+. .|+|||.+++.
T Consensus       336 gl~--v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          336 NVD--AEFEVASDREVSV--KGFDTVIVDPPRAGL--HPRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             TCC--EEEEECCTTTCCC--TTCSEEEECCCTTCS--CHHHHHHHH-HHCCSEEEEEE
T ss_pred             CCc--EEEEECChHHcCc--cCCCEEEEcCCccch--HHHHHHHHH-hcCCCcEEEEE
Confidence            875  9999999988642  289999986542211  234556554 49999998874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.29  E-value=1.4e-12  Score=116.77  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCccc
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITI----NEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMPFEDNHFD  192 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD  192 (359)
                      ..+.++.+|||||||+|.++..+++.  .+|+|+|+    ++.+++...  ....+ .+++.++++ |+..++  .++||
T Consensus        78 ~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           78 NLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             TSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCC
Confidence            34567899999999999999999987  58999999    565442211  01111 146899999 888764  56899


Q ss_pred             eEEeccccc---ccCCHH---HHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATC---HAPKLE---DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|..+..   +..+..   .+|..+.++|||||.+++..
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv  191 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV  191 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999977653   222322   57899999999999888743

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.29  E-value=4.8e-11  Score=109.12  Aligned_cols=155  Identities=11%  Similarity=0.025  Sum_probs=98.1

Q ss_pred             CCEEEEECCCCChHHHHHHhh------------------cCCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 018194          123 GDRILDVGCGVGGPMRAIAAH------------------SRANVVGITIN-----------EYQVNRARLHNKKAGLDSL  173 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~g~D~s-----------~~~~~~a~~~~~~~~~~~~  173 (359)
                      ..+|+|+||++|..+..+...                  +..+|+..|+.           +.+.+..++.   .+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            579999999999988766543                  34688889986           4444433221   121112


Q ss_pred             eEEEEcCCCC---CCCCCCccceEEecccccccCCHH---------------------------------------HHHH
Q 018194          174 CEVVCGNFLK---MPFEDNHFDGAYSIEATCHAPKLE---------------------------------------DVYA  211 (359)
Q Consensus       174 i~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------------~~l~  211 (359)
                      --|+.+....   -.||++++|+|+++.+|||+.+..                                       .+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3566555444   458899999999999999985432                                       1266


Q ss_pred             HHHhccCCCCEEEEEEeeeCccc-ccCch-HHHHHHhhh----------hcCCCCC-CCCCHHHHHHHHHhCC-CeEEEE
Q 018194          212 EVFRVLKPGSLYVSYEWVTTDKY-EAENK-EHVDIIQGI----------ERGDALP-GLRSYAEITEIAKRVG-FEVVKE  277 (359)
Q Consensus       212 ~~~~~LkpgG~l~~~~~~~~~~~-~~~~~-~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~l~~aG-F~~i~~  277 (359)
                      ..++.|+|||++++.-....... .+... .....+..+          ......| .+.+.++++++++++| |++...
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            66899999999999765544321 11100 222222211          1112223 4578999999999984 898887


Q ss_pred             Eec
Q 018194          278 KDL  280 (359)
Q Consensus       278 ~~~  280 (359)
                      +.+
T Consensus       290 e~~  292 (384)
T 2efj_A          290 ETF  292 (384)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.28  E-value=2.3e-11  Score=108.02  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.+++++..   .++++++++|+.+++++
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~---~~~v~vi~gD~l~~~~~  111 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL---YNNIEIIWGDALKVDLN  111 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH---CSSEEEEESCTTTSCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc---CCCeEEEECchhhCCcc
Confidence            345677888888889999999999999999999997 57999999999999999998873   24799999999998888


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      +.+||.|+++...
T Consensus       112 ~~~fD~Iv~NlPy  124 (295)
T 3gru_A          112 KLDFNKVVANLPY  124 (295)
T ss_dssp             GSCCSEEEEECCG
T ss_pred             cCCccEEEEeCcc
Confidence            7789999987544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.27  E-value=1.3e-11  Score=114.32  Aligned_cols=118  Identities=17%  Similarity=0.122  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cC--------------------------------------CEE
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SR--------------------------------------ANV  148 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--------------------------------------~~v  148 (359)
                      +.+...++......++..|||++||+|.++.+.+.. .+                                      .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            445566777888888999999999999999888763 11                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-c---CCHHHHHHHHHhccCC--CCE
Q 018194          149 VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-A---PKLEDVYAEVFRVLKP--GSL  222 (359)
Q Consensus       149 ~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~Lkp--gG~  222 (359)
                      +|+|+|+.+++.|++++...++.+++++.++|+.+++.+ .+||+|+++-.... +   .+...+++.+.+.||+  ||.
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~  345 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS  345 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence            999999999999999999999888899999999998754 58999999854321 1   2355667777777766  888


Q ss_pred             EEEE
Q 018194          223 YVSY  226 (359)
Q Consensus       223 l~~~  226 (359)
                      ++++
T Consensus       346 ~~ii  349 (393)
T 3k0b_A          346 VYVL  349 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.26  E-value=3.8e-11  Score=113.56  Aligned_cols=117  Identities=18%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--------------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-Ce
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--------------SRANVVGITINEYQVNRARLHNKKAGLDS-LC  174 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i  174 (359)
                      ..+.+++.+...++.+|||+|||+|.++..+++.              ...+++|+|+++.+++.|+.+....++.. ++
T Consensus       159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~  238 (445)
T 2okc_A          159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  238 (445)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence            4556666777778889999999999999888764              24689999999999999999888777643 57


Q ss_pred             EEEEcCCCCCCCCCCccceEEecccccccCC-----------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPK-----------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       175 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+.++|....+.. .+||+|+++-.+.+...                 ...+++.+.++|||||+++++.
T Consensus       239 ~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~  307 (445)
T 2okc_A          239 PIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  307 (445)
T ss_dssp             SEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence            8999999876543 48999999876654321                 1478999999999999998864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.26  E-value=3.3e-11  Score=111.14  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cC--------------------------------------CEE
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SR--------------------------------------ANV  148 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--------------------------------------~~v  148 (359)
                      +.+...++......++..|||.+||+|.++.+.+.. .+                                      .+|
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            445566777778888999999999999999888753 11                                      469


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-c---CCHHHHHHHHHhccCC--CCE
Q 018194          149 VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-A---PKLEDVYAEVFRVLKP--GSL  222 (359)
Q Consensus       149 ~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~Lkp--gG~  222 (359)
                      +|+|+|+.+++.|++++...|+.+++++.++|+.+++.+ .+||+|+++-.... +   .+...+++++.+.||+  ||.
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~  338 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS  338 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence            999999999999999999999988899999999998754 58999999854331 2   2456777777777776  888


Q ss_pred             EEEE
Q 018194          223 YVSY  226 (359)
Q Consensus       223 l~~~  226 (359)
                      ++++
T Consensus       339 ~~ii  342 (384)
T 3ldg_A          339 QFIL  342 (384)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.26  E-value=1.7e-11  Score=113.35  Aligned_cols=118  Identities=20%  Similarity=0.236  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-C--------------------------------------CEE
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-R--------------------------------------ANV  148 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------------~~v  148 (359)
                      +.+...++......++.+|||++||+|.++..++... +                                      .+|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            3455667777888889999999999999998887631 1                                      579


Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccc-c---CCHHHHHHHHHhccCC--CCE
Q 018194          149 VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH-A---PKLEDVYAEVFRVLKP--GSL  222 (359)
Q Consensus       149 ~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~Lkp--gG~  222 (359)
                      +|+|+|+.+++.|++++...++.+++++.++|+.+++.+ .+||+|+++-.... +   .+...+++++.+.||+  |+.
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            999999999999999999999877899999999998754 58999999766432 1   2456777888778877  888


Q ss_pred             EEEE
Q 018194          223 YVSY  226 (359)
Q Consensus       223 l~~~  226 (359)
                      +.+.
T Consensus       340 ~~ii  343 (385)
T 3ldu_A          340 YYLI  343 (385)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.24  E-value=1.1e-13  Score=120.49  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-C
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED-N  189 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~  189 (359)
                      .+.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++..   ..++++++++|+.+++++. +
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCC
Confidence            456777788888999999999999999999987 4899999999999998887654   2357999999999988763 6


Q ss_pred             ccceEEecccc-----------cccCCHHHHH----HHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEAT-----------CHAPKLEDVY----AEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l-----------~~~~~~~~~l----~~~~~~LkpgG~l~~~  226 (359)
                      +| .|+++...           .|..+...++    +.+.++|+|||.+.+.
T Consensus        94 ~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           94 RY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             EE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             Cc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            78 66665321           1222333344    6689999999988763

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.19  E-value=7.3e-11  Score=108.86  Aligned_cols=126  Identities=11%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             eecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 018194           93 HFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS  172 (359)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~  172 (359)
                      .+.+...........+.+...+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++..++ .
T Consensus       185 ~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~  261 (369)
T 3bt7_A          185 RQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-D  261 (369)
T ss_dssp             EEETTSCCCSBHHHHHHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-C
T ss_pred             EECCCCeecCCHHHHHHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-C
Confidence            34444333344455566677777777654 578999999999999999985 46999999999999999999998887 4


Q ss_pred             CeEEEEcCCCCCC--CCC--------------CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          173 LCEVVCGNFLKMP--FED--------------NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       173 ~i~~~~~d~~~~~--~~~--------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +++|+.+|+.+..  +..              .+||+|++.-.-      ..+..++.+.|+|+|.++.+.
T Consensus       262 ~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvs  326 (369)
T 3bt7_A          262 NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYIS  326 (369)
T ss_dssp             SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEE
T ss_pred             ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEE
Confidence            8999999997642  121              379999875321      123456677778999988754

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.18  E-value=9.8e-11  Score=101.99  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+|+.|++.++++...   .++++++++|+.++++++
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~   91 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSS   91 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHH
Confidence            45566788888889999999999999999999986 47999999999999999998764   357999999999987643


Q ss_pred             ----CccceEEecc
Q 018194          189 ----NHFDGAYSIE  198 (359)
Q Consensus       189 ----~~fD~v~~~~  198 (359)
                          ++|| |+++.
T Consensus        92 ~~~~~~~~-vv~Nl  104 (255)
T 3tqs_A           92 VKTDKPLR-VVGNL  104 (255)
T ss_dssp             SCCSSCEE-EEEEC
T ss_pred             hccCCCeE-EEecC
Confidence                4688 55543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.18  E-value=3.4e-10  Score=101.44  Aligned_cols=112  Identities=13%  Similarity=0.193  Sum_probs=84.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED---  188 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---  188 (359)
                      +...+.+.++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.++++++..++. +++++++|+.+++...   
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~  172 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRY  172 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGG
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcccccc
Confidence            445667889999999999999999999985  3479999999999999999999998874 7999999998765322   


Q ss_pred             CccceEEecc------cccccCC------------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIE------ATCHAPK------------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~------~l~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+||.|++.-      ++..-+|                  ..++|..+.++|+ ||+++...
T Consensus       173 ~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          173 HEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             TTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            5799999731      1211111                  1246788888887 89877643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.15  E-value=8.7e-11  Score=110.42  Aligned_cols=107  Identities=22%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+.+++.+...++.+|||+|||+|.++..+++.  .+.+++|+|+++.+++.|          .+++++++|+.+.+ +
T Consensus        27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~-~   95 (421)
T 2ih2_A           27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE-P   95 (421)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC-C
T ss_pred             HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC-c
Confidence            4455666666556779999999999999999985  457999999999998766          36899999998865 3


Q ss_pred             CCccceEEecccccc----------cCC-------------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCH----------APK-------------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~----------~~~-------------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .++||+|+++-....          +++                   ...+++.+.++|+|||+++++.
T Consensus        96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A           96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  164 (421)
T ss_dssp             SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence            468999999632211          111                   1266899999999999998864

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.12  E-value=1.5e-10  Score=101.63  Aligned_cols=86  Identities=19%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++ +|||||||+|.++..+++. +.+|+++|+|+.|++.++++...    .+++++++|+.++++++
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGG
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhh
Confidence            455677888888889 9999999999999999996 57999999999999999988752    47999999999987654


Q ss_pred             C-ccceEEecccc
Q 018194          189 N-HFDGAYSIEAT  200 (359)
Q Consensus       189 ~-~fD~v~~~~~l  200 (359)
                      . .+|.|+++...
T Consensus       108 ~~~~~~iv~NlPy  120 (271)
T 3fut_A          108 VPQGSLLVANLPY  120 (271)
T ss_dssp             SCTTEEEEEEECS
T ss_pred             ccCccEEEecCcc
Confidence            2 68888887643

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=99.08  E-value=1.2e-09  Score=99.13  Aligned_cols=159  Identities=12%  Similarity=-0.015  Sum_probs=101.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-----------------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE---cCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-----------------SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC---GNF  181 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~---~d~  181 (359)
                      ...+|+|+||++|..+..+...                 +..+|+..|+..+.....-+.........+--|+.   +.+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999877654322                 33689999998888776655543211000123444   444


Q ss_pred             CCCCCCCCccceEEecccccccCC---------------------------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          182 LKMPFEDNHFDGAYSIEATCHAPK---------------------------------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       182 ~~~~~~~~~fD~v~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ..-.||++++|+|+++.++||+.+                                 +..+|+..++.|+|||++++.-.
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence            445689999999999999999753                                 22458888999999999998765


Q ss_pred             eeCcccc------cCchHHHHHHhhh-----hcC-----CCCC-CCCCHHHHHHHHHhCC-CeEEEEEec
Q 018194          229 VTTDKYE------AENKEHVDIIQGI-----ERG-----DALP-GLRSYAEITEIAKRVG-FEVVKEKDL  280 (359)
Q Consensus       229 ~~~~~~~------~~~~~~~~~~~~~-----~~~-----~~~~-~~~~~~~~~~~l~~aG-F~~i~~~~~  280 (359)
                      .....-.      .....+...+...     ...     ...| .+.+.++++++++++| |++...+.+
T Consensus       211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~  280 (359)
T 1m6e_X          211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS  280 (359)
T ss_dssp             ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred             cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence            5533210      0111222222211     111     1122 3668899999999996 577665544

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.07  E-value=1.7e-10  Score=102.85  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FE  187 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~  187 (359)
                      .+.++..+.+.++.+|||+|||+|..+..+++. ++.+|+|+|+|+.+++.|+++....+  .+++++++|+.+++  +.
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHH
Confidence            344566777888999999999999999999986 36899999999999999999988776  58999999998764  11


Q ss_pred             ---CCccceEEeccc
Q 018194          188 ---DNHFDGAYSIEA  199 (359)
Q Consensus       188 ---~~~fD~v~~~~~  199 (359)
                         .++||.|++...
T Consensus        93 ~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           93 TLGIEKVDGILMDLG  107 (301)
T ss_dssp             HTTCSCEEEEEEECS
T ss_pred             hcCCCCCCEEEEcCc
Confidence               157999998653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.06  E-value=1.6e-09  Score=90.18  Aligned_cols=97  Identities=11%  Similarity=0.007  Sum_probs=79.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCC---------------
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL--DSLCEVVCGNFLKM---------------  184 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~---------------  184 (359)
                      +..+|||+||  |..+..+++.++.+|+.+|.+++..+.+++.++..|+  .++|+++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4679999998  4788888875468999999999999999999999998  78999999997642               


Q ss_pred             C--------C-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          185 P--------F-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       185 ~--------~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +        . ..++||+|+...-     .....+..+.+.|+|||.+++
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEE
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEE
Confidence            1        1 2368999999763     334677778899999999976

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.04  E-value=5.8e-10  Score=102.69  Aligned_cols=101  Identities=11%  Similarity=-0.064  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCCeEEEEcCCCCCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKA---------------GLDSLCEVVCGNFLKMP  185 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~~  185 (359)
                      ++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.++++++..               ++. +++++++|+.+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            5789999999999999999986 4569999999999999999999887               664 4999999987642


Q ss_pred             C-CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 F-EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      . ..+.||+|++.- .   .....++..+.+.|||||.+++..
T Consensus       126 ~~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1 135799999642 1   234788999999999999887753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.03  E-value=4e-11  Score=104.71  Aligned_cols=89  Identities=16%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE-------YQVNRARLHNKKAGLDSLCEVVCGNFLKM-  184 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-  184 (359)
                      .+...+...++.+|||+|||+|..+..+++. +++|+++|+|+       .+++.|+++.+..++..+++++++|+.+. 
T Consensus        74 ~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l  152 (258)
T 2r6z_A           74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM  152 (258)
T ss_dssp             HHHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH
T ss_pred             HHHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH
Confidence            3444445566789999999999999999986 67999999999       99999988877666655699999999874 


Q ss_pred             C-CCC--CccceEEecccccc
Q 018194          185 P-FED--NHFDGAYSIEATCH  202 (359)
Q Consensus       185 ~-~~~--~~fD~v~~~~~l~~  202 (359)
                      + +++  ++||+|++.-.+.+
T Consensus       153 ~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          153 PALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHCCCSEEEECCCC--
T ss_pred             HhhhccCCCccEEEECCCCCC
Confidence            2 343  68999999766554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.02  E-value=4.8e-10  Score=103.30  Aligned_cols=103  Identities=11%  Similarity=-0.105  Sum_probs=84.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCC--CCCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SR-ANVVGITINEYQVNRARLHNKKAGLDSL-CEVVCGNFLKMP--FEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~--~~~~~fD~v~  195 (359)
                      .++.+|||++||+|.++..++.. .+ .+|+++|+++.+++.++++++..++.++ ++++++|+.+..  ...+.||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            46789999999999999999985 34 5899999999999999999999998766 999999986531  1245799999


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.-    ......++..+.+.|+|||.+++..
T Consensus       131 lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          131 LDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             ECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            865    1234678999999999999887754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.02  E-value=1e-09  Score=109.06  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-------------------------------------------c
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-------------------------------------------S  144 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~  144 (359)
                      +.+...++......++..|||.+||+|.++.+.+..                                           +
T Consensus       176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~  255 (703)
T 3v97_A          176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY  255 (703)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence            345566777777788899999999999998887752                                           1


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEecccccc-c---CCHHHHHHH---HHh
Q 018194          145 RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEATCH-A---PKLEDVYAE---VFR  215 (359)
Q Consensus       145 ~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~-~---~~~~~~l~~---~~~  215 (359)
                      ..+|+|+|+++.+++.|++++...|+.+.+++.++|+.++.  ...++||+|+++-.... +   .+...+++.   +.+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk  335 (703)
T 3v97_A          256 SSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK  335 (703)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             CccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHH
Confidence            25899999999999999999999999888999999998874  33348999999854332 1   133444444   445


Q ss_pred             ccCCCCEEEEEE
Q 018194          216 VLKPGSLYVSYE  227 (359)
Q Consensus       216 ~LkpgG~l~~~~  227 (359)
                      .+.|||.+++..
T Consensus       336 ~~~~g~~~~ilt  347 (703)
T 3v97_A          336 NQFGGWNLSLFS  347 (703)
T ss_dssp             HHCTTCEEEEEE
T ss_pred             hhCCCCeEEEEe
Confidence            556899988853

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.00  E-value=2.3e-09  Score=93.09  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+++.+.+.++.+|||||||+|.++..+++.+..+|+++|+|+.+++.++++ .    ..+++++++|+.+++++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~   91 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFC   91 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChh
Confidence            345667788888888999999999999999999987447999999999999999876 1    35799999999998765


Q ss_pred             C
Q 018194          188 D  188 (359)
Q Consensus       188 ~  188 (359)
                      +
T Consensus        92 ~   92 (249)
T 3ftd_A           92 S   92 (249)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.99  E-value=8.4e-10  Score=106.46  Aligned_cols=118  Identities=11%  Similarity=0.043  Sum_probs=91.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-------------------RANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      ..+.+++.+...++.+|||.|||+|.++..+++..                   ...++|+|+++.+++.|+.+....++
T Consensus       157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            34556666777788999999999999988877531                   24799999999999999998877776


Q ss_pred             CC----CeEEEEcCCCCCC-CCCCccceEEecccccccCC--------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          171 DS----LCEVVCGNFLKMP-FEDNHFDGAYSIEATCHAPK--------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       171 ~~----~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..    ++.+.++|....+ .+..+||+|+++-.+.....              ...++..+.+.|||||++.++.
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  312 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            53    2788999987643 34578999999865543321              2378999999999999998864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.97  E-value=1.4e-09  Score=96.00  Aligned_cols=73  Identities=21%  Similarity=0.340  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCE----EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN----VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~----v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ...+.+++.+.+.++.+|||||||+|.++..+++.. .+    |+++|+|+.|++.++++.     ..+++++++|+.++
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            345667788888899999999999999999999863 34    999999999999999883     24799999999998


Q ss_pred             CCC
Q 018194          185 PFE  187 (359)
Q Consensus       185 ~~~  187 (359)
                      +++
T Consensus       103 ~~~  105 (279)
T 3uzu_A          103 DFG  105 (279)
T ss_dssp             CGG
T ss_pred             Chh
Confidence            764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.90  E-value=1e-09  Score=95.46  Aligned_cols=85  Identities=11%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN--VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      ...+.+++.+.+.++.+|||||||+|.++. +++  +.+  |+++|+|+.|++.++++....   ++++++++|+.++++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCH
Confidence            345667777788889999999999999999 754  356  999999999999998876432   479999999998875


Q ss_pred             CC-----CccceEEeccc
Q 018194          187 ED-----NHFDGAYSIEA  199 (359)
Q Consensus       187 ~~-----~~fD~v~~~~~  199 (359)
                      ++     +..|.|+++..
T Consensus        82 ~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           82 GELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             HHHHHHHTSCEEEEEECC
T ss_pred             HHhhcccCCceEEEECCC
Confidence            42     12356666543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.88  E-value=8.7e-10  Score=95.84  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=75.6

Q ss_pred             HHHHHhcCCCCC--CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCCeEEEEcCC
Q 018194          112 EMAVDLIDVKAG--DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------G-LDSLCEVVCGNF  181 (359)
Q Consensus       112 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-~~~~i~~~~~d~  181 (359)
                      +.+.+.+.+.++  .+|||+|||+|..+..++.. +++|+++|+++.+...+++..+..       + +..+++++++|+
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            556677777777  89999999999999999987 679999999998866666554322       1 224699999998


Q ss_pred             CCC-CCCCCccceEEecccccccCCHHHHHHHHHhccCCCC
Q 018194          182 LKM-PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       182 ~~~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  221 (359)
                      .+. +....+||+|++.-...+- .....+++..++|++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence            763 3222479999998776553 23355566666666644

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.88  E-value=1.8e-08  Score=96.84  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=84.9

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC--C-CCCCcc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHS----RANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKM--P-FEDNHF  191 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~-~~~~~f  191 (359)
                      ..++.+|||.+||+|.+...++++.    ...++|+|+++.++..|+.+....|+. .++.+.++|....  | .....|
T Consensus       219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f  298 (542)
T 3lkd_A          219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF  298 (542)
T ss_dssp             TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred             CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence            4578899999999999888877652    479999999999999999988877774 4688999998875  3 346789


Q ss_pred             ceEEecccccc-------------------cC---C-HHHHHHHHHhccC-CCCEEEEEE
Q 018194          192 DGAYSIEATCH-------------------AP---K-LEDVYAEVFRVLK-PGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~-------------------~~---~-~~~~l~~~~~~Lk-pgG~l~~~~  227 (359)
                      |+|+++-.+..                   ++   + --.++..+.+.|| |||++.++.
T Consensus       299 D~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl  358 (542)
T 3lkd_A          299 DGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL  358 (542)
T ss_dssp             SEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred             cEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence            99998743221                   11   0 1248999999999 999998764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.87  E-value=1.5e-09  Score=100.27  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=64.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCC-CC-CCCccceEEec
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA--GLDSLCEVVCGNFLKM-PF-EDNHFDGAYSI  197 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~-~~-~~~~fD~v~~~  197 (359)
                      +|.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++...  ++ .+++++++|+.+. +. ++++||+|++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            5889999999999999999886 579999999999999999999887  77 6899999999874 21 23589999985

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.87  E-value=4.6e-09  Score=101.18  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc----------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS----------------RANVVGITINEYQVNRARLHNKKAGLDSL  173 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  173 (359)
                      ..+.+++.+...++ +|||.+||+|.+...++++.                ...++|+|+++.++..|+.+....++..+
T Consensus       233 Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~  311 (544)
T 3khk_A          233 IVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN  311 (544)
T ss_dssp             HHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred             HHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            44556666666665 99999999999887765421                46899999999999999999888887766


Q ss_pred             eEEEEcCCCCCC-CCCCccceEEecccccc-------------------------cC---C-HHHHHHHHHhccCCCCEE
Q 018194          174 CEVVCGNFLKMP-FEDNHFDGAYSIEATCH-------------------------AP---K-LEDVYAEVFRVLKPGSLY  223 (359)
Q Consensus       174 i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~-------------------------~~---~-~~~~l~~~~~~LkpgG~l  223 (359)
                      +.+.++|....+ ++..+||+|+++-.+..                         ++   + --.++..+.+.|||||++
T Consensus       312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  391 (544)
T 3khk_A          312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM  391 (544)
T ss_dssp             CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred             cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence            666888876654 45678999999754432                         11   0 126899999999999998


Q ss_pred             EEEE
Q 018194          224 VSYE  227 (359)
Q Consensus       224 ~~~~  227 (359)
                      .++.
T Consensus       392 aiVl  395 (544)
T 3khk_A          392 ALLL  395 (544)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8763

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.87  E-value=1.1e-08  Score=99.33  Aligned_cols=101  Identities=13%  Similarity=0.045  Sum_probs=78.1

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSR--ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      .+..|||||||+|.++...++   ..+  .+|++||-|+ +...+++.....++.++|+++++|++++.+| +++|+|++
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS  434 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS  434 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence            345899999999998544433   333  3789999997 5667888888889999999999999998776 68999998


Q ss_pred             ccccccc--CCHHHHHHHHHhccCCCCEEE
Q 018194          197 IEATCHA--PKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       197 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      -.+=..+  .....++....|.|||||.++
T Consensus       435 EwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          435 ELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            5432222  234478888899999999886

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.81  E-value=3.9e-09  Score=91.86  Aligned_cols=128  Identities=14%  Similarity=0.235  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHh--------hcC-----CEEEEEeCCH---HHHH-----------HHHHHHHHcC----
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA--------HSR-----ANVVGITINE---YQVN-----------RARLHNKKAG----  169 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~--------~~~-----~~v~g~D~s~---~~~~-----------~a~~~~~~~~----  169 (359)
                      .++.+|||+|+|+|..+..+++        .+.     .+++++|..|   +++.           .+++......    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            4567999999999998877554        232     4899999876   4444           4555544310    


Q ss_pred             ------C---CCCeEEEEcCCCC-CCC-CC---CccceEEecc-cccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCc
Q 018194          170 ------L---DSLCEVVCGNFLK-MPF-ED---NHFDGAYSIE-ATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTD  232 (359)
Q Consensus       170 ------~---~~~i~~~~~d~~~-~~~-~~---~~fD~v~~~~-~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~  232 (359)
                            +   ..+++++.+|+.+ ++. ++   ..||+|+... +-...|+  ...+++.+.++|+|||+++.+  +.  
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ty--sa--  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF--TS--  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEES--CC--
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEE--eC--
Confidence                  1   1367899999877 332 22   2799999853 2222233  368999999999999999852  11  


Q ss_pred             ccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEe
Q 018194          233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~  279 (359)
                                                 ...+++.|+++||++.+...
T Consensus       215 ---------------------------a~~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          215 ---------------------------AGFVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             ---------------------------BHHHHHHHHHHTEEEEEECC
T ss_pred             ---------------------------CHHHHHHHHHCCCEEEeCCC
Confidence                                       13577889999999876533

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.78  E-value=3.6e-08  Score=86.67  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcCCCCC-CCCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKA--G--LDSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~--~--~~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      +...+||-||.|.|..++++.++++ .+|+.+|+++..++.+++.+...  +  -.++++++.+|.... .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            3457999999999999999999744 69999999999999999987542  1  146899999999875 3445789999


Q ss_pred             EecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +....=..-+    --.++++.+++.|+|||.++..
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            9754311111    1357999999999999999874

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.77  E-value=2.2e-08  Score=86.23  Aligned_cols=107  Identities=20%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      .+...++++.+|||||||+|.|+..+++..+ ..++|+|++-.+....... ..  ...++.....++....++.+.||+
T Consensus        67 ~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~--~g~~ii~~~~~~dv~~l~~~~~Dl  143 (277)
T 3evf_A           67 HERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS--LGWNIITFKDKTDIHRLEPVKCDT  143 (277)
T ss_dssp             HHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB--TTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             HHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc--CCCCeEEEeccceehhcCCCCccE
Confidence            3335677888999999999999998887533 4788899874431000000 00  011456667776555677789999


Q ss_pred             EEecccccccC----CH---HHHHHHHHhccCCC-CEEEE
Q 018194          194 AYSIEATCHAP----KL---EDVYAEVFRVLKPG-SLYVS  225 (359)
Q Consensus       194 v~~~~~l~~~~----~~---~~~l~~~~~~Lkpg-G~l~~  225 (359)
                      |++..+.+ ..    |.   ..+|+.+.++|+|| |.|++
T Consensus       144 VlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          144 LLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            99987665 22    21   13578889999999 99998

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.77  E-value=3.3e-08  Score=95.77  Aligned_cols=101  Identities=14%  Similarity=0.053  Sum_probs=76.3

Q ss_pred             CCEEEEECCCCChHHHHHH---hhc-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-
Q 018194          123 GDRILDVGCGVGGPMRAIA---AHS-----------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-  187 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~---~~~-----------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-  187 (359)
                      +..|||||||+|.++...+   +..           ..+|++||.|+..+...+.+.. .++.++|+++.+|++++.++ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            4589999999999974332   111           2499999999987766665554 67888999999999998663 


Q ss_pred             ----CCccceEEecccccccC--CHHHHHHHHHhccCCCCEEE
Q 018194          188 ----DNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       188 ----~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~  224 (359)
                          .++.|+|++-..-....  -..++|..+.+.|||||.++
T Consensus       489 ~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence                57899999866533221  24578888899999999876

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.60  E-value=1.6e-07  Score=82.42  Aligned_cols=105  Identities=10%  Similarity=0.065  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh------cCCEEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH------SRANVVGITINE--------------------------YQVNRARLHNKKA  168 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~g~D~s~--------------------------~~~~~a~~~~~~~  168 (359)
                      ....+|||+|+..|..+..++..      ++.+|+++|..+                          ..++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34569999999999998888763      367999999642                          1467789999999


Q ss_pred             CCC-CCeEEEEcCCCC-CC-CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          169 GLD-SLCEVVCGNFLK-MP-FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       169 ~~~-~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+. ++|+++.+|+.+ ++ ++.++||+|+.-.-.  .......|..+...|+|||.+++-+
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcC
Confidence            984 899999999976 33 445789999987632  1234578999999999999998743

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.59  E-value=2.9e-07  Score=83.09  Aligned_cols=123  Identities=13%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      +.+|++|||+||.+|.|+..+++. ++.|++||+.+-. ....    .   .++|+++++|+.....+.+.||+|+|..+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~-~~l~----~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMA-QSLM----D---TGQVTWLREDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCC-HHHH----T---TTCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcC-hhhc----c---CCCeEEEeCccccccCCCCCcCEEEEcCC
Confidence            568999999999999999999986 6799999986421 1111    1   35799999999988766778999999775


Q ss_pred             ccccCCHHHHHHHHHhccCCC---CEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPG---SLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEV  274 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  274 (359)
                          .++...+.-+.+.|..|   +.++.......       .....+..            ....+.+.|+..||..
T Consensus       280 ----~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk-------~~~~~l~~------------~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          280 ----EKPAKVAALMAQWLVNGWCRETIFNLKLPMK-------KRYEEVSH------------NLAYIQAQLDEHGINA  334 (375)
T ss_dssp             ----SCHHHHHHHHHHHHHTTSCSEEEEEEECCSS-------SHHHHHHH------------HHHHHHHHHHHTTCCE
T ss_pred             ----CChHHhHHHHHHHHhccccceEEEEEEeccc-------chHHHHHH------------HHHHHHHHHHhcCcch
Confidence                34555655555555554   44443322211       11111111            1246778899999974

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.58  E-value=1.7e-07  Score=85.18  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=88.5

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCCC-
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLD-----SLCEVVCGNFLKMP-  185 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~-  185 (359)
                      .....+...+|.+|||+++|.|+=+..+++. .+..|+++|+|+..++..+++....+..     .++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            3455678899999999999999999888874 2348999999999999999998877643     47888888887754 


Q ss_pred             CCCCccceEEeccc--------ccccCC----------------HHHHHHHHHhccCCCCEEEEEEee
Q 018194          186 FEDNHFDGAYSIEA--------TCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       186 ~~~~~fD~v~~~~~--------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ...+.||.|++.-.        +..-++                ..++|....+.|||||+|+....+
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS  286 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS  286 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence            34578999986321        111111                246888999999999999876433

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.56  E-value=1.4e-07  Score=81.89  Aligned_cols=84  Identities=26%  Similarity=0.330  Sum_probs=69.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  185 (359)
                      .+.+++.+.+.++..+||++||.|..+..+++. +.+|+|+|.++.+++.+++ ...    ++++++++|+.+++     
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~   84 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAA   84 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHH
Confidence            455677778889999999999999999999997 7799999999999999988 543    48999999998864     


Q ss_pred             CCCCccceEEecccc
Q 018194          186 FEDNHFDGAYSIEAT  200 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l  200 (359)
                      ...+++|.|++...+
T Consensus        85 ~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           85 LGVERVDGILADLGV   99 (285)
T ss_dssp             TTCSCEEEEEEECSC
T ss_pred             cCCCCcCEEEeCCcc
Confidence            223579999975543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.51  E-value=5.3e-08  Score=83.99  Aligned_cols=108  Identities=17%  Similarity=0.086  Sum_probs=70.5

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG  193 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  193 (359)
                      .+...+.++.+|||||||+|.|+..+++..+ ..|+|+|++..+...+...   .....++.....++....++.+.+|+
T Consensus        83 ~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~~g~~ii~~~~~~dv~~l~~~~~Dv  159 (282)
T 3gcz_A           83 EERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TTLGWNLIRFKDKTDVFNMEVIPGDT  159 (282)
T ss_dssp             HHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CBTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---ccCCCceEEeeCCcchhhcCCCCcCE
Confidence            3334677889999999999999998886433 4799999986532211100   00112334444443333456789999


Q ss_pred             EEecccccccCC-------HHHHHHHHHhccCCC--CEEEEE
Q 018194          194 AYSIEATCHAPK-------LEDVYAEVFRVLKPG--SLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~~~-------~~~~l~~~~~~Lkpg--G~l~~~  226 (359)
                      |+|..+.. ...       ...+|.-+.++|+||  |.|++=
T Consensus       160 VLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          160 LLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             EEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            99988766 321       123577778999999  999873

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.49  E-value=3e-07  Score=71.15  Aligned_cols=96  Identities=18%  Similarity=0.170  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCC-hHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVG-GPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +.+.+++.+..  .++.+|||||||.| ..+..|++..++.|+++|+++..++                +++.|+.+...
T Consensus        23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~   84 (153)
T 2k4m_A           23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRM   84 (153)
T ss_dssp             HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCH
T ss_pred             HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCcc
Confidence            34455555554  34679999999999 6999999866899999999986543                88899987332


Q ss_pred             CC-CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 ED-NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .. ..||+|++...   -++....+.++.+.+  |.-+++.
T Consensus        85 ~~Y~~~DLIYsirP---P~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           85 EIYRGAALIYSIRP---PAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             HHHTTEEEEEEESC---CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             cccCCcCEEEEcCC---CHHHHHHHHHHHHHc--CCCEEEE
Confidence            11 47999988663   235666666666543  5566664

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.47  E-value=7.7e-07  Score=87.60  Aligned_cols=107  Identities=9%  Similarity=0.032  Sum_probs=75.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcC----CEEEEEeCCHHHHHHH--HHHHHH----cCCCCCeEEEEcCCCCCC-CCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSR----ANVVGITINEYQVNRA--RLHNKK----AGLDSLCEVVCGNFLKMP-FED  188 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~----~~v~g~D~s~~~~~~a--~~~~~~----~~~~~~i~~~~~d~~~~~-~~~  188 (359)
                      ..++.+|||.|||+|.++..+++..+    .+++|+|+++.+++.|  +.....    .+.. ...+...|+.... ...
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~-~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN-APTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB-CCEEECCCGGGCCGGGG
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC-cceEEecchhccccccc
Confidence            34678999999999999999887532    5899999999999999  433322    1221 2345566665532 345


Q ss_pred             CccceEEecccccc-cC---------------------------C-HHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCH-AP---------------------------K-LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~-~~---------------------------~-~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..||+|+++-.... ..                           + ...++..+.+.|+|||++.++.
T Consensus       398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl  465 (878)
T 3s1s_A          398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM  465 (878)
T ss_dssp             TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence            78999999765521 10                           0 2347788999999999998863

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.38  E-value=4.4e-07  Score=82.24  Aligned_cols=106  Identities=19%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC---C----CCCeEEEEcCCCCCC----CCCC
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG---L----DSLCEVVCGNFLKMP----FEDN  189 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---~----~~~i~~~~~d~~~~~----~~~~  189 (359)
                      .++.+||-||.|.|..++++.+++..+|+.+|+++..++.+++.+....   .    .++++++.+|+...-    -..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            3568999999999999999999766799999999999999998754210   1    135889999986531    1246


Q ss_pred             ccceEEeccccccc-CC---------HHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHA-PK---------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~-~~---------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||+|+....-... ++         ..++++.+++.|+|||.++..
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            89999986321110 11         257889999999999999864

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.37  E-value=1.6e-05  Score=76.37  Aligned_cols=118  Identities=18%  Similarity=0.242  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--------------RANVVGITINEYQVNRARLHNKKAGLDSLC  174 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i  174 (359)
                      ...+.+++.+...++.+|+|-+||+|.+.....++.              ...++|+|+++.+...|+.+..-.|.. ..
T Consensus       204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~  282 (530)
T 3ufb_A          204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YP  282 (530)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CC
T ss_pred             HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cc
Confidence            445667778888889999999999999887665421              247999999999999999887777764 34


Q ss_pred             EEEEcCCCCCCC----CCCccceEEecccccccC---------------C-HHHHHHHHHhccC-------CCCEEEEEE
Q 018194          175 EVVCGNFLKMPF----EDNHFDGAYSIEATCHAP---------------K-LEDVYAEVFRVLK-------PGSLYVSYE  227 (359)
Q Consensus       175 ~~~~~d~~~~~~----~~~~fD~v~~~~~l~~~~---------------~-~~~~l~~~~~~Lk-------pgG~l~~~~  227 (359)
                      .+..+|....+.    +...||+|+++-.+..-.               + -..++..+.+.||       |||++.++-
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl  362 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV  362 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred             cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence            677888766542    235799999987653211               1 1246777888776       799998864

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.30  E-value=1.6e-06  Score=75.31  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      +.++.+||||||++|.|+..+++..+ ..|+|+|++..+...... ..  ....++.....++....+..+.+|+|++..
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~--~~~~~iv~~~~~~di~~l~~~~~DlVlsD~  155 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ--TLGWNIVKFKDKSNVFTMPTEPSDTLLCDI  155 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC--BTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc--ccCCceEEeecCceeeecCCCCcCEEeecC
Confidence            45889999999999999999997533 489999997543110000 00  001123333333322334567899999977


Q ss_pred             cccccCCH-------HHHHHHHHhccCCC-CEEEEE
Q 018194          199 ATCHAPKL-------EDVYAEVFRVLKPG-SLYVSY  226 (359)
Q Consensus       199 ~l~~~~~~-------~~~l~~~~~~Lkpg-G~l~~~  226 (359)
                      +.. ....       ..+|.-+.++|+|| |.|++=
T Consensus       156 APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          156 GES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             cCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            655 3221       34577778999999 999984

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.19  E-value=6.2e-06  Score=71.18  Aligned_cols=107  Identities=20%  Similarity=0.228  Sum_probs=71.7

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCcc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMPFEDNHF  191 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~f  191 (359)
                      +.+...+.++.+||||||++|.|+...+...++ +|+|+|+...-.+.= ......++ ..|.+..+ |+..++.  ..+
T Consensus        86 i~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l~~--~~~  161 (321)
T 3lkz_A           86 LVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYRPS--ECC  161 (321)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSSCC--CCC
T ss_pred             HHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhCCC--CCC
Confidence            444456778899999999999999988875554 799999975511000 00001111 23788887 8877653  679


Q ss_pred             ceEEecccccccCCHH-------HHHHHHHhccCCC-CEEEE
Q 018194          192 DGAYSIEATCHAPKLE-------DVYAEVFRVLKPG-SLYVS  225 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~-------~~l~~~~~~Lkpg-G~l~~  225 (359)
                      |+|+|.-. ..-+++.       .+|.-+.+.|++| |-+++
T Consensus       162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            99999776 5444422       3666667889998 87776

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.16  E-value=3.4e-05  Score=69.51  Aligned_cols=149  Identities=10%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG--------------------LDSLCEVVCG  179 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--------------------~~~~i~~~~~  179 (359)
                      .+...|+.+|||.......+... ++..++-+|. |..++.-++.+.+.+                    .+++..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35579999999999988888763 5678888888 888877777766541                    1367899999


Q ss_pred             CCCCCCC---------CCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhh
Q 018194          180 NFLKMPF---------EDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGI  248 (359)
Q Consensus       180 d~~~~~~---------~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
                      |+.+...         ..+...++++-.++.+++  ....+++.+.+.. |+|.++++|......  .....-......+
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~--~~~~fg~~m~~~l  251 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ--PNDRFGAIMQSNL  251 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS--TTCCHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC--CcchHHHHHHHHh
Confidence            9987421         234578899999999996  4668888888876 788888777654411  1111111111111


Q ss_pred             h--cCCCCC---CCCCHHHHHHHHHhCCCe
Q 018194          249 E--RGDALP---GLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       249 ~--~~~~~~---~~~~~~~~~~~l~~aGF~  273 (359)
                      .  .+..++   .+.++++..+.|+++||+
T Consensus       252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            1  122222   346889999999999998

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.09  E-value=5.7e-07  Score=100.61  Aligned_cols=147  Identities=12%  Similarity=-0.002  Sum_probs=71.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccce
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHS------RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDG  193 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  193 (359)
                      .+..+|||||.|+|..+..+.+..      ..+++..|+|+...+.++++++..    ++.....|..+. ++...+||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence            467899999999998766554421      137899999999888888777653    233333344332 334567999


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      |++..++|..++....|++++++|||||++++.+..........    ..++...  ........+.++|.++|+++||.
T Consensus      1315 via~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~----~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A         1315 LVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEM----VGFLTSP--EQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp             EEEECC--------------------CCEEEEEEC--------------------------------CTTTTSSTTTTEE
T ss_pred             EEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccccccc----ccccccc--cccCCcccCHHHHHHHHHhCCCc
Confidence            99999998888999999999999999999998764321100000    0000000  00011234556788889999998


Q ss_pred             EEEE
Q 018194          274 VVKE  277 (359)
Q Consensus       274 ~i~~  277 (359)
                      .+..
T Consensus      1389 ~~~~ 1392 (2512)
T 2vz8_A         1389 LVAL 1392 (2512)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            8765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.08  E-value=3.8e-05  Score=64.17  Aligned_cols=106  Identities=21%  Similarity=0.255  Sum_probs=71.3

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCcc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKMPFEDNHF  191 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~f  191 (359)
                      +.+...+.++++|||+||++|.|+...+...+ .+|+|+|+...-.+. -......|+ +.++|..+ |+..++  ..++
T Consensus        70 i~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~--~~~~  145 (267)
T 3p8z_A           70 FVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLP--PEKC  145 (267)
T ss_dssp             HHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCC--CCCC
T ss_pred             HHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecC--Cccc
Confidence            44444678899999999999999998887545 479999996542210 000112233 46899999 976654  3679


Q ss_pred             ceEEecccccccCCH-------HHHHHHHHhccCCCCEEEE
Q 018194          192 DGAYSIEATCHAPKL-------EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       192 D~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~  225 (359)
                      |.|+|...- .-+++       ..+|+-+.+.|++ |-+++
T Consensus       146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            999997654 22332       2366666788999 66665

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.04  E-value=1.3e-05  Score=67.99  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCe---EEEEc-CCCCCCCCCCcc
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLC---EVVCG-NFLKMPFEDNHF  191 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i---~~~~~-d~~~~~~~~~~f  191 (359)
                      ..-++|+++|||+||+.|.|+...++..+. .|.|.++.... ..    ......+..+   .|.++ |+.+++  ...+
T Consensus        68 K~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~----~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~  140 (269)
T 2px2_A           68 RRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE----EPMLMQSYGWNIVTMKSGVDVFYKP--SEIS  140 (269)
T ss_dssp             TTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC----CCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred             cCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc----CCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence            335778999999999999999999886222 44455444321 00    0000000223   45547 998743  4679


Q ss_pred             ceEEecccccccC----CHH---HHHHHHHhccCCCC-EEEE
Q 018194          192 DGAYSIEATCHAP----KLE---DVYAEVFRVLKPGS-LYVS  225 (359)
Q Consensus       192 D~v~~~~~l~~~~----~~~---~~l~~~~~~LkpgG-~l~~  225 (359)
                      |+|+|..+-. ..    |..   .+|.-+.++|+||| .|++
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            9999987654 32    211   25666779999999 7876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.96  E-value=3.2e-05  Score=68.74  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=47.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      +.+.++.... .++..|||++||+|..+..+++. +.+++|+|+++.+++.|++++...
T Consensus       224 l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          224 LAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3444555544 57899999999999999988774 789999999999999999998765

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.81  E-value=0.00054  Score=60.99  Aligned_cols=148  Identities=9%  Similarity=0.016  Sum_probs=96.3

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC---------CCCCccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--LDSLCEVVCGNFLKMP---------FEDNHFD  192 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~---------~~~~~fD  192 (359)
                      ..|++||||-=.....+....++.++=+| .|..++..++.....+  ...+..++.+|+.+ .         +.....-
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence            57999999987776666532247999999 5999999888887543  24578899999987 3         1223345


Q ss_pred             eEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH-hhhhcCC--------CCCCCCC-H
Q 018194          193 GAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII-QGIERGD--------ALPGLRS-Y  260 (359)
Q Consensus       193 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~-~  260 (359)
                      ++++-.+++|++  +...+++.+...+.||+.+++-. ...+. ........... ..+....        ......+ .
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~-~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~  259 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET-SPLHG-DEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENR  259 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC-CCTTC-SHHHHHHHHHHHHHHC-----------CCTTCCTTC
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe-cCCCC-cchhHHHHHHHHHHHHHcCCcCCCCccccccCCCCh
Confidence            788888999987  36688999999888998887732 22211 10000111111 2221111        1112224 6


Q ss_pred             HHHHHHHHhCCCeEE
Q 018194          261 AEITEIAKRVGFEVV  275 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i  275 (359)
                      +++.+.|.+.||+.+
T Consensus       260 ~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          260 AVVADWLNRHGWRAT  274 (310)
T ss_dssp             CCHHHHHTTTTEEEE
T ss_pred             HHHHHHHHHCcCccc
Confidence            789999999999988

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.78  E-value=2.6e-05  Score=69.26  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=68.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--C
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--F  186 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~  186 (359)
                      .+.++..+.+.||..++|..||.|..+..+++.  +..+|+|+|.++.+++.++ +.    ..++++++++++.++.  +
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L  120 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYV  120 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHH
Confidence            456777888899999999999999999999985  4579999999999999884 33    1468999999998863  1


Q ss_pred             C----CCccceEEeccccc
Q 018194          187 E----DNHFDGAYSIEATC  201 (359)
Q Consensus       187 ~----~~~fD~v~~~~~l~  201 (359)
                      +    .+++|.|+....+.
T Consensus       121 ~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          121 AERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             HHTTCTTCEEEEEEECSCC
T ss_pred             HhcCCCCcccEEEECCccC
Confidence            1    13699998876554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.51  E-value=0.0003  Score=63.55  Aligned_cols=72  Identities=11%  Similarity=-0.008  Sum_probs=58.1

Q ss_pred             HHHHHHHHhcCCCC------CCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 018194          109 LHEEMAVDLIDVKA------GDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF  181 (359)
Q Consensus       109 ~~~~~~~~~~~~~~------~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~  181 (359)
                      ...+.|++.+.+.+      +..|||||.|.|.+|..|++.. ..+|+++|+++.++...++.. .   .++++++.+|+
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~  114 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDP  114 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCc
Confidence            44566666666653      5899999999999999999852 359999999999999988776 2   35899999999


Q ss_pred             CCC
Q 018194          182 LKM  184 (359)
Q Consensus       182 ~~~  184 (359)
                      .++
T Consensus       115 l~~  117 (353)
T 1i4w_A          115 YDW  117 (353)
T ss_dssp             TCH
T ss_pred             cch
Confidence            765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.41  E-value=0.00036  Score=60.26  Aligned_cols=102  Identities=13%  Similarity=0.120  Sum_probs=65.5

Q ss_pred             HHHHHHHHH-hcCCCCCCEEEEECC------CCChHHHHHHh-hc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 018194          108 RLHEEMAVD-LIDVKAGDRILDVGC------GVGGPMRAIAA-HS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVC  178 (359)
Q Consensus       108 ~~~~~~~~~-~~~~~~~~~vLDiGc------G~G~~~~~l~~-~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~  178 (359)
                      ..+.+++-. .+..+.+++|||+|+      -.|.+  .+.+ .+ ++.|+++|+.+-..            ... .+++
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------da~-~~Iq  158 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------DAD-STLI  158 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------SSS-EEEE
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------CCC-eEEE
Confidence            334455522 345678999999997      44552  2222 23 36999999976431            112 4599


Q ss_pred             cCCCCCCCCCCccceEEeccccccc-----CC------HHHHHHHHHhccCCCCEEEE
Q 018194          179 GNFLKMPFEDNHFDGAYSIEATCHA-----PK------LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       179 ~d~~~~~~~~~~fD~v~~~~~l~~~-----~~------~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +|+.... ..++||+|++-.+-.-.     +.      .+.++.-+.++|+|||.|++
T Consensus       159 GD~~~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV  215 (344)
T 3r24_A          159 GDCATVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  215 (344)
T ss_dssp             SCGGGEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            9986643 24789999987643221     11      34566677889999999997

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.33  E-value=0.00057  Score=59.35  Aligned_cols=57  Identities=21%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG  169 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~  169 (359)
                      .+.+++... .++..|||..||+|..+....+ .+.+++|+|+++..++.+++++...+
T Consensus       202 ~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          202 IERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhC-CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            344444443 6789999999999999988776 47899999999999999999987543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.24  E-value=0.0011  Score=58.46  Aligned_cols=127  Identities=17%  Similarity=0.220  Sum_probs=77.4

Q ss_pred             CCCEEEEECCCCChHHHHHH----h-hcCC--EEEEEeCCH--------H-HHHHHHHHHHHc----CCCCCeEEEEcCC
Q 018194          122 AGDRILDVGCGVGGPMRAIA----A-HSRA--NVVGITINE--------Y-QVNRARLHNKKA----GLDSLCEVVCGNF  181 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~g~D~s~--------~-~~~~a~~~~~~~----~~~~~i~~~~~d~  181 (359)
                      +.-+|||+|-|+|.......    + .+..  +++.+|..+        . .-+..+......    +-.-.+++..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            44689999999998553222    1 2344  556666421        1 111122222111    1111346778888


Q ss_pred             CC-CC-CCCCccceEEecccccccCCH----HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCC
Q 018194          182 LK-MP-FEDNHFDGAYSIEATCHAPKL----EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP  255 (359)
Q Consensus       182 ~~-~~-~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (359)
                      .+ ++ +++..||+++... +.--.++    ..+++.++++++|||.+.-+                             
T Consensus       176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY-----------------------------  225 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY-----------------------------  225 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES-----------------------------
T ss_pred             HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE-----------------------------
Confidence            65 22 3445799998854 3222233    58999999999999998742                             


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          256 GLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       256 ~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                        .....+++.|+++||++.+..-+
T Consensus       226 --taag~VRR~L~~aGF~V~k~~G~  248 (308)
T 3vyw_A          226 --SSSLSVRKSLLTLGFKVGSSREI  248 (308)
T ss_dssp             --CCCHHHHHHHHHTTCEEEEEECC
T ss_pred             --eCcHHHHHHHHHCCCEEEecCCC
Confidence              12257889999999999877544

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.17  E-value=0.024  Score=50.75  Aligned_cols=152  Identities=13%  Similarity=0.145  Sum_probs=97.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcC----------------------CCCCeEEE
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAG----------------------LDSLCEVV  177 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~----------------------~~~~i~~~  177 (359)
                      +...|+-+|||.=.....+...  .+..++=+|. |+.++.=++.+...+                      .+.+.+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            4569999999998877777653  3568888887 555554333333210                      14578899


Q ss_pred             EcCCCCCC----------CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194          178 CGNFLKMP----------FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII  245 (359)
Q Consensus       178 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  245 (359)
                      ..|+.+..          +..+..-++++-.++.+++  ....+|+.+.+.. |+|.++++|...+.     ........
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~-----d~fg~~M~  242 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG-----DRFGQIMI  242 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT-----SHHHHHHH
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC-----CHHHHHHH
Confidence            99997731          3334556888888999986  4668888888766 55677777755321     12111122


Q ss_pred             hhhh-cCCCCCC---CCCHHHHHHHHHhCCCeEEEEEec
Q 018194          246 QGIE-RGDALPG---LRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       246 ~~~~-~~~~~~~---~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ..+. .+..+..   +.+.++..+.|.++||+.+...++
T Consensus       243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            2221 1222232   357788999999999999887766

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.15  E-value=0.003  Score=57.75  Aligned_cols=101  Identities=14%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PF  186 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~  186 (359)
                      +.+...++++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++.    |..   .++..+-.++     ..
T Consensus       182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHh
Confidence            33556788999999999886 7788888887777 799999999998888654    321   2222221111     01


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+.+|+|+-.-.      ....+....+.|+|||+++++.
T Consensus       255 ~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          255 TDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             TTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeC
Confidence            1236899876432      2356788999999999998753

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.90  E-value=0.0018  Score=59.88  Aligned_cols=104  Identities=16%  Similarity=0.050  Sum_probs=70.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C------C
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P------F  186 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~------~  186 (359)
                      ....+.+|.+||-+|||. |..+..+++..|+ +|+++|.+++.++.+++.    |.    +.+..+-.+. .      .
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----GF----ETIDLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----TC----EEEETTSSSCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CC----cEEcCCCcchHHHHHHHHh
Confidence            456788999999999976 7788888887787 999999999988877542    32    3232221111 0      0


Q ss_pred             CCCccceEEeccccccc--------CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHA--------PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|+|+-.-.-...        .++...+..+.++|+|||+++++-
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            12369999865432210        013457889999999999998753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.86  E-value=0.0045  Score=57.15  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=71.7

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC------CC
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP------FE  187 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~------~~  187 (359)
                      ...+.+|.+||-+|+|. |..+..+++..|+ .|+++|.+++.++.+++.    |.    +.+...-.+ +.      ..
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga----~~i~~~~~~~~~~~v~~~t~  251 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF----EIADLSLDTPLHEQIAALLG  251 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC----EEEETTSSSCHHHHHHHHHS
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CC----cEEccCCcchHHHHHHHHhC
Confidence            46788999999999875 7788888887787 799999999998888653    32    222211111 00      11


Q ss_pred             CCccceEEeccccc---------ccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATC---------HAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-.-.-.         |.+++...++...++|++||+++++.
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            23689998654321         33455678899999999999998753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.74  E-value=0.0055  Score=50.47  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ....+.++++||..|+  |.|..+..++...|++|+++|.+++.++.+++    .+..   ...  |..+..        
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~  102 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVG--DSRSVDFADEILEL  102 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEE--ETTCSTHHHHHHHH
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEe--eCCcHHHHHHHHHH
Confidence            4457889999999995  34566666666567899999999988766543    2321   111  332211        


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+|+++.+..       ...++.+.+.|+|||+++++
T Consensus       103 ~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          103 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             hCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence            11246999986542       24678899999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.69  E-value=0.022  Score=51.88  Aligned_cols=99  Identities=21%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C---
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----P---  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~---  185 (359)
                      ....+.+|.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   ..+...-.+.     .   
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~  248 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPVG  248 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTTS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhhh
Confidence            556788999999999875 6788888887787 999999999988887764    322   2221111110     0   


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+.+|+|+-.-.      -...+..+.++|+|||+++++.
T Consensus       249 ~~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          249 LVPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             SSTTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             ccCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEe
Confidence            12347999886432      2456788999999999998864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.60  E-value=0.0034  Score=56.87  Aligned_cols=95  Identities=17%  Similarity=0.091  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA  194 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  194 (359)
                      ....+.+|.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++ .+...+  . ..+|+|
T Consensus       170 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~-~~~~~~--~-~~~D~v  238 (348)
T 3two_A          170 KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM----GVK---HFY-TDPKQC--K-EELDFI  238 (348)
T ss_dssp             HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT----TCS---EEE-SSGGGC--C-SCEEEE
T ss_pred             HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc----CCC---eec-CCHHHH--h-cCCCEE
Confidence            345788999999999875 7788888887789999999999988877653    322   222 333222  2 279998


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +-.-.-.      ..+....++|+|||+++++.
T Consensus       239 id~~g~~------~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          239 ISTIPTH------YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EECCCSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             EECCCcH------HHHHHHHHHHhcCCEEEEEC
Confidence            8644321      24677889999999999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.52  E-value=0.0061  Score=55.25  Aligned_cols=99  Identities=19%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  187 (359)
                      +...+.+|.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-.+..      ..
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~  232 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATD  232 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcC
Confidence            567888999999999875 7788888887787 899999999988887764    321   22221111110      12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-...-      ...+..+.+.|+|||+++++-
T Consensus       233 g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          233 GKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence            2369999864321      246788899999999998754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.50  E-value=0.007  Score=54.94  Aligned_cols=99  Identities=17%  Similarity=0.103  Sum_probs=68.0

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCC-----C
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN---FLKM-----P  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~-----~  185 (359)
                      ....+.+|.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++..+   ..+.     .
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCcccccchHHHHHHH
Confidence            456788999999999875 7788888887788 999999999988877643    322   222211   0010     0


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....+|+|+-.-.      ....+....++|+|||+++++.
T Consensus       238 ~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          238 QLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             HhCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEe
Confidence            00146899876432      2346788899999999998753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.50  E-value=0.0066  Score=54.70  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--C--CCC
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--F--EDN  189 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~  189 (359)
                      +....+.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.+..  .  ..+
T Consensus       159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~~~~g  231 (340)
T 3s2e_A          159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRL----GAE---VAVNARDTDPAAWLQKEIG  231 (340)
T ss_dssp             HHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHHS
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc----CCC---EEEeCCCcCHHHHHHHhCC
Confidence            3556788999999999975 7888888987789999999999988887653    321   22221111110  0  013


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+|+-...      -...++.+.+.|+|||+++++.
T Consensus       232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeC
Confidence            6788875432      2457788999999999998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.41  E-value=0.012  Score=53.66  Aligned_cols=99  Identities=18%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~  188 (359)
                      +...+++|.+||-+|+|. |..+..+++..|++|+++|.++..++.+++.    |..   .++..+..++.      ...
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTGD  255 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhCC
Confidence            456788999999999875 7788888887789999999999988887654    321   22222211110      122


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ..+|+|+-.-.       ...+..+.+.|+|||+++++..
T Consensus       256 ~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          256 RGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             CCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECC
T ss_pred             CCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEec
Confidence            37999886543       1246778889999999998643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.39  E-value=0.019  Score=51.99  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC------CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~------~~  187 (359)
                      ....+.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+- .+..      ..
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~i~~~~~  234 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GAD---VTLVVDPAKEEESSIIERIR  234 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCS---EEEECCTTTSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCcccccHHHHHHHHhc
Confidence            456788999999999874 6777888887788999999999988887643    322   2222110 1110      11


Q ss_pred             ---CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 ---DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                         ...+|+|+-.-.      ....++...++|+|||+++++.
T Consensus       235 ~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          235 SAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence               246899876432      2346788899999999998753

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.35  E-value=0.011  Score=54.17  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC--CCCCC----
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN--FLKMP----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d--~~~~~----  185 (359)
                      +.+...+.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++...  -.++.    
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----GVN---EFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----TCC---EEECGGGCSSCHHHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---EEEccccCchhHHHHHH
Confidence            34556788999999999974 7788888887787 899999999988877643    322   222211  11110    


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                       ...+.+|+|+-.-.      -...+..+.+.|+|| |+++++-
T Consensus       258 ~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          258 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEc
Confidence             11247999886432      245678899999997 9998854

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.34  E-value=0.0014  Score=56.78  Aligned_cols=99  Identities=7%  Similarity=-0.131  Sum_probs=76.6

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC---CCCCccceEEecc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP---FEDNHFDGAYSIE  198 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~---~~~~~fD~v~~~~  198 (359)
                      +..+||+=+|+|.++.++.+ .+.+++.+|.++..++..+++++.   ..+++++..|... +.   .+..+||+|++.-
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            45789999999999999888 457999999999999998887754   3579999999654 21   2345799999977


Q ss_pred             cccccCCHHHHHHHHHh--ccCCCCEEEE
Q 018194          199 ATCHAPKLEDVYAEVFR--VLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~--~LkpgG~l~~  225 (359)
                      ....-.+...+++.+.+  .+.|+|.+++
T Consensus       168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          168 SYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            66543466777776665  4668999887

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.33  E-value=0.02  Score=52.02  Aligned_cols=101  Identities=19%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CCC------
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL--KMP------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~~~------  185 (359)
                      ....+.+|.+||-+|+|. |..+..+++..|++ |+++|.+++.++.+++. ..    .-+.+...+..  ++.      
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHH
Confidence            556788999999999875 77888888877886 99999999999988875 21    11222211110  000      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....+|+|+-.-.      -...+..+.++|+|||+++++.
T Consensus       248 t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          248 FGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             TSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECC
T ss_pred             hCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEc
Confidence            12346899886432      2346788899999999999854

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.31  E-value=0.014  Score=50.08  Aligned_cols=102  Identities=18%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             CEEEEECCCCChHHHHHHhh--------cCCEEEEEe-----CCH----------------------HHHHHHH---HHH
Q 018194          124 DRILDVGCGVGGPMRAIAAH--------SRANVVGIT-----INE----------------------YQVNRAR---LHN  165 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D-----~s~----------------------~~~~~a~---~~~  165 (359)
                      ..|+|+||-.|..+..++..        +..+|+++|     +.+                      +.++...   ++.
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            48999999999988876642        346999999     321                      1122111   112


Q ss_pred             HHcCC-CCCeEEEEcCCCCC-C-----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          166 KKAGL-DSLCEVVCGNFLKM-P-----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       166 ~~~~~-~~~i~~~~~d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+. .++|+++.+++.+. |     .+..+||+|+.-.-.  .......+..+...|+|||.+++-+
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcC
Confidence            23444 47899999999773 2     245579999987632  2345678899999999999999844

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.30  E-value=0.01  Score=53.18  Aligned_cols=97  Identities=18%  Similarity=0.234  Sum_probs=66.2

Q ss_pred             HHHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-----
Q 018194          114 AVDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP-----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-----  185 (359)
                      +.+...+.++.+||-.||  |.|..+..+++..|++|+++|.+++.++.+++.    +..  . .  .|..+ ..     
T Consensus       137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~~--~-~--~d~~~~~~~~~~~  207 (333)
T 1v3u_A          137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD--A-A--FNYKTVNSLEEAL  207 (333)
T ss_dssp             HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS--E-E--EETTSCSCHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCc--E-E--EecCCHHHHHHHH
Confidence            335567889999999998  456666677776788999999999888777332    221  1 1  23322 11     


Q ss_pred             --CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 --FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        ...+.+|+++.+...       ..+....+.|+|||+++++
T Consensus       208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          208 KKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             HHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence              112468998876541       3578889999999999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.25  E-value=0.012  Score=53.02  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             HHHhcCCCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|.+||-+|+|  .|..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.+..      
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHHH
Confidence            3456788899999999997  46677888887789999999999988887763    321   22221111110      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+|+|+..-.-      . .+.+..++|+|||+++++
T Consensus       209 ~~~~g~Dvvid~~g~------~-~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          209 TNGIGADAAIDSIGG------P-DGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             TTTSCEEEEEESSCH------H-HHHHHHHTEEEEEEEEEC
T ss_pred             hCCCCCcEEEECCCC------h-hHHHHHHHhcCCCEEEEE
Confidence            123479998865431      1 223445899999999875

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.17  E-value=0.014  Score=54.09  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEECCCCChHHHHHH-hh-cC-CEEEEEeCCHHHHHHHHHHHHH--cCCC-CCeEEEEcCCCC
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIA-AH-SR-ANVVGITINEYQVNRARLHNKK--AGLD-SLCEVVCGNFLK  183 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~-~~-~~-~~v~g~D~s~~~~~~a~~~~~~--~~~~-~~i~~~~~d~~~  183 (359)
                      .+.++..|+|||++.|..+..++ +. +. .+|+++|++|...+..+++.+.  .+.. ++++++..-+.+
T Consensus       223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            45789999999999999999888 43 22 6999999999999999998887  2222 577777665544

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.15  E-value=0.024  Score=51.71  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCCC-----
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LKMP-----  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----  185 (359)
                      .....+.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-  .++.     
T Consensus       183 ~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHH
Confidence            3456788999999999874 6677888887787 899999999988887653    321   2221110  1110     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ...+.+|+|+-.-.      ....++.+.+.|+|| |+++++-
T Consensus       256 ~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEEe
Confidence            11236899876432      135678899999999 9998753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.14  E-value=0.0047  Score=56.45  Aligned_cols=96  Identities=24%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccce
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-M-PFEDNHFDG  193 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~  193 (359)
                      ...+.+|.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.    |..   .++..+-.+ . ... +.+|+
T Consensus       189 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~-~g~Dv  260 (369)
T 1uuf_A          189 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHL-KSFDF  260 (369)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTT-TCEEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHhh-cCCCE
Confidence            35788999999999974 7778888887789999999999988887753    321   222211100 0 111 46899


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+-.-.-.      ..++...+.|+|||+++++
T Consensus       261 vid~~g~~------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          261 ILNTVAAP------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEECCSSC------CCHHHHHTTEEEEEEEEEC
T ss_pred             EEECCCCH------HHHHHHHHHhccCCEEEEe
Confidence            88654321      2356778999999999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.11  E-value=0.022  Score=52.01  Aligned_cols=101  Identities=16%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCCC----
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LKMP----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~----  185 (359)
                      +.+...+.++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++.    |..   .++..+-  .++.    
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEecccccchHHHHHH
Confidence            33456788999999999874 6777888887787 899999999988887643    321   2221110  1110    


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                       ...+.+|+|+-.-.      ....+....++|+|| |+++++-
T Consensus       256 ~~t~gg~Dvvid~~g------~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          256 EKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHhCCCCCEEEECCC------CHHHHHHHHHHHhcCCCEEEEEc
Confidence             11236899886432      135678899999999 9998753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.10  E-value=0.02  Score=52.24  Aligned_cols=100  Identities=16%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-C-CCCC-----
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-F-LKMP-----  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~-~~~~-----  185 (359)
                      .....+.++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+ . .++.     
T Consensus       185 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GAT---DFVNPNDHSEPISQVLSK  257 (374)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCC---EEECGGGCSSCHHHHHHH
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---eEEeccccchhHHHHHHH
Confidence            3456788999999999874 6777888887787 899999999988887643    321   222111 0 1110     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ...+.+|+|+-.-.      ....+..+.++|+|| |+++++.
T Consensus       258 ~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          258 MTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEEc
Confidence            11236899876432      135678899999999 9998753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.08  E-value=0.016  Score=51.74  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             HHhcCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------C
Q 018194          115 VDLIDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------F  186 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~  186 (359)
                      .....++++.+||-.|+ | .|..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.+..      .
T Consensus       133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred             HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHh
Confidence            34457889999999983 3 57778888887789999999999988887653    311   22222111110      1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|+|+....-       ..+....++|+|||+++++.
T Consensus       206 ~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence            23479998875432       35678889999999999853

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.07  E-value=0.011  Score=53.11  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C
Q 018194          114 AVDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F  186 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~  186 (359)
                      +.+...++++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+.+.   .|..   ..+..+-.+..     .
T Consensus       141 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          141 LLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFD---GAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             HHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCC---EEEECCCHHHHHHHHHh
Confidence            446678889999999998  356777788877789999999999888776322   2321   22211111110     1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+.+|+|+.+..       ...+..+.+.|+|||+++++-
T Consensus       215 ~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          215 CPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEe
Confidence            1246899876543       146888999999999998753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.04  E-value=0.026  Score=51.53  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=67.6

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCCC-----
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--LKMP-----  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~-----  185 (359)
                      .....+.++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++.    |..   .++..+-  .++.     
T Consensus       184 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---eEecccccchhHHHHHHH
Confidence            3456788999999999874 6777888887787 899999999988887642    321   2221110  1110     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ...+.+|+|+-.-.      ....+....+.|++| |+++++-
T Consensus       257 ~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCC------CHHHHHHHHHHhhcCCcEEEEec
Confidence            11236899876432      135678889999999 9998753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.02  E-value=0.063  Score=48.27  Aligned_cols=94  Identities=22%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             cCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CC
Q 018194          118 IDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FE  187 (359)
Q Consensus       118 ~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~  187 (359)
                      ..+.++.+||-+|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   ..+  |..+..        ..
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----GAD---ETV--NYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTSTTHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CCC---EEE--cCCcccHHHHHHHHhC
Confidence            47788999999998  467778888887788999999999988887642    321   122  322211        11


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+.... .      ..++.+.+.|+++|+++++.
T Consensus       233 ~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          233 GKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence            246999987654 1      24677888999999998754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.01  E-value=0.013  Score=52.81  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  187 (359)
                      ....+.+|.+||-+|+  |.|..+..+++..|++|++++.+++.++.+++.    |..   .++..+ .+..      ..
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~~~~~  224 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVREATG  224 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHHHHTT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHHHHhC
Confidence            5567889999999997  357788888887789999999999988877763    321   223222 2211      12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-.-.-       ..+..+.+.|+|||+++++.
T Consensus       225 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          225 GAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence            2369999865442       24678889999999999753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.93  E-value=0.026  Score=51.48  Aligned_cols=100  Identities=13%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-C-CCCC-----
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN-F-LKMP-----  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d-~-~~~~-----  185 (359)
                      .....+.++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++.    |..   .++..+ . .++.     
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVITE  260 (376)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCc---EEEccccccchHHHHHHH
Confidence            3456788999999999874 6777888887787 899999999988877643    321   222111 0 0110     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  227 (359)
                      ...+.+|+|+-.-.      -...++.+.+.|++| |+++++-
T Consensus       261 ~~~~g~Dvvid~~G------~~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          261 LTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCccEEEECCC------CHHHHHHHHHHhhcCCCEEEEEC
Confidence            11236899875432      135678899999999 9998753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.93  E-value=0.023  Score=51.19  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             HHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---CC----
Q 018194          115 VDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK---MP----  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~----  185 (359)
                      .+...+.++.+||-.|+  |.|..+..+++..|++|+++|.++..++.+++.   .|..   ..+  |..+   +.    
T Consensus       148 ~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~~~~~  219 (345)
T 2j3h_A          148 YEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFD---DAF--NYKEESDLTAALK  219 (345)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCS---EEE--ETTSCSCSHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCCHHHHHHHHH
Confidence            35567889999999997  356777777776789999999999888776532   2321   122  2221   10    


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                       ...+.+|+|+.+..     .  ..++...+.|+|||+++++
T Consensus       220 ~~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          220 RCFPNGIDIYFENVG-----G--KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHCTTCEEEEEESSC-----H--HHHHHHHTTEEEEEEEEEC
T ss_pred             HHhCCCCcEEEECCC-----H--HHHHHHHHHHhcCCEEEEE
Confidence             11246899886543     1  3688899999999999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.93  E-value=0.015  Score=51.75  Aligned_cols=92  Identities=12%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceE
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGA  194 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  194 (359)
                      ....+++|.+||-+|+|. |..+..+++..|++|++++ |++.++.+++.    |..   .++ .|...+   ...+|+|
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga~---~v~-~d~~~v---~~g~Dvv  203 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GVR---HLY-REPSQV---TQKYFAI  203 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TEE---EEE-SSGGGC---CSCEEEE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CCC---EEE-cCHHHh---CCCccEE
Confidence            667888999999999963 7788888887789999999 99888887664    211   222 242222   4679998


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +-.-.-       ..+....++|+|||+++++
T Consensus       204 ~d~~g~-------~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          204 FDAVNS-------QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ECC--------------TTGGGEEEEEEEEEE
T ss_pred             EECCCc-------hhHHHHHHHhcCCCEEEEE
Confidence            754321       1225678999999999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.93  E-value=0.016  Score=52.06  Aligned_cols=98  Identities=17%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  187 (359)
                      ....+.++.+||-+|+  |.|..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.+..      ..
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAE---YLINASKEDILRQVLKFTN  214 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCc---EEEeCCCchHHHHHHHHhC
Confidence            3457889999999994  346777788887789999999999988877653    311   22222211110      12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+..-.-       ..+..+.++|+|||+++++-
T Consensus       215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence            3469998875432       35778889999999998753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.91  E-value=0.048  Score=50.33  Aligned_cols=97  Identities=19%  Similarity=0.129  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCc
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNH  190 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~  190 (359)
                      .+.+|.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++.    |..   .++..+-.++.      .....
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence            678999999999874 6677888887788 999999999998888764    311   22221111110      12236


Q ss_pred             cceEEecccccccCCHHHHHHHHH----hccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVF----RVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~----~~LkpgG~l~~~~  227 (359)
                      +|+|+-.-.     .....+..+.    +.+++||+++++-
T Consensus       283 ~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          283 AKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            899875432     3323444444    4449999999854

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.87  E-value=0.029  Score=50.92  Aligned_cols=98  Identities=12%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             HhcCCCCCCEEEEEC--CCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCC
Q 018194          116 DLIDVKAGDRILDVG--CGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~  188 (359)
                      +...++++.+||-+|  +|.|..+..+++..|++|++++.+++.++.+++    .|..   ..+..+-.+..     ...
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~  229 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEYP  229 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHCT
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhcC
Confidence            445788999999999  346778888888778999999999988887765    2321   22222111110     112


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+|+|+..-.     .  ..++.+.+.|+++|+++++.
T Consensus       230 ~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          230 EGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEe
Confidence            46899886543     1  47788999999999998753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.83  E-value=0.054  Score=48.38  Aligned_cols=122  Identities=17%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             CCEEEEECCCCChHHHHHHhhcC--C-EE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSR--A-NV-VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~--~-~v-~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~  195 (359)
                      ..+++|+-||.|.++..+.+. |  . .+ .++|+++..++..+.++..       .+..+|+.++.   ++...+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHHHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhccCCCCEEE
Confidence            469999999999999888774 3  3 45 6999999999888777531       15678888764   2223689998


Q ss_pred             eccccccc-----------CCH-HHHHHHHHh-cc-----CCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCC
Q 018194          196 SIEATCHA-----------PKL-EDVYAEVFR-VL-----KPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGL  257 (359)
Q Consensus       196 ~~~~l~~~-----------~~~-~~~l~~~~~-~L-----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (359)
                      ....-..+           .|. ..++.++.+ ++     +|  .+++.|-...-.  .                    -
T Consensus        82 ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P--~~~~lENV~gl~--~--------------------~  137 (327)
T 3qv2_A           82 MSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP--KHIFIENVPLFK--E--------------------S  137 (327)
T ss_dssp             ECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC--SEEEEEECGGGG--G--------------------S
T ss_pred             ecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC--CEEEEEchhhhc--C--------------------h
Confidence            76543322           232 255666666 44     45  555555433210  0                    0


Q ss_pred             CCHHHHHHHHHhCCCeEEE
Q 018194          258 RSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       258 ~~~~~~~~~l~~aGF~~i~  276 (359)
                      ...+.+.+.|++.||.+..
T Consensus       138 ~~~~~i~~~l~~~GY~v~~  156 (327)
T 3qv2_A          138 LVFKEIYNILIKNQYYIKD  156 (327)
T ss_dssp             HHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEE
Confidence            1235788889999998754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.82  E-value=0.031  Score=50.52  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=67.3

Q ss_pred             HHhcCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC
Q 018194          115 VDLIDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE  187 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~  187 (359)
                      .+...++++.+||-+|+ | .|..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.+..     ..
T Consensus       160 ~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          160 FQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAET  232 (353)
T ss_dssp             TTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHh
Confidence            35567889999999953 3 46777888887789999999999988887753    321   22222111110     01


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+....-       ..+....+.|+|||+++++.
T Consensus       233 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          233 GQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEE
Confidence            2468998875542       25677889999999998754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.74  E-value=0.029  Score=50.62  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  187 (359)
                      ....+ ++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++.    |..   .++..+-.++.      ..
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTT
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHcC
Confidence            45577 899999999963 6677778877788 999999999988877653    321   22211111110      11


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+..-.      ....++.+.+.|++||+++.+.
T Consensus       234 g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          234 GNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence            236899886543      2356788899999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.69  E-value=0.0049  Score=55.69  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CC-CCCCCCCCc
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG----NF-LKMPFEDNH  190 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~----d~-~~~~~~~~~  190 (359)
                      .+ ++.+||-+|+|. |..+..+++..  |++|+++|.|++.++.+++.    |..   .++..    |. ..+. ....
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~-~g~g  238 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLT-DGLG  238 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHH-TTCC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhh-cCCC
Confidence            66 899999999974 66778888876  89999999999988887653    321   22211    11 0111 1236


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-.-.      ....++.+.++|+|||+++++.
T Consensus       239 ~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          239 ASIAIDLVG------TEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEEESSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             ccEEEECCC------ChHHHHHHHHHhhcCCEEEEeC
Confidence            899886543      1346788899999999998753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.66  E-value=0.028  Score=50.67  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=66.5

Q ss_pred             HhcCCCCCCEEEEECCC--CChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCC
Q 018194          116 DLIDVKAGDRILDVGCG--VGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PFE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~  187 (359)
                      ....+.++.+||-.|+|  .|..+..+++.. |++|+++|.+++.++.+++.    +..   .++...-.+.     ...
T Consensus       164 ~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~  236 (347)
T 1jvb_A          164 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRIT  236 (347)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHHh
Confidence            34678899999999998  455666777766 89999999999988877543    311   1221111111     011


Q ss_pred             C-CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 D-NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      . +.+|+|+....      ....++...++|+|||+++++.
T Consensus       237 ~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 ESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             cCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEEC
Confidence            1 47899886543      2346788899999999998753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.61  E-value=0.016  Score=52.36  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-------
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MP-------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~-------  185 (359)
                      ....+.++.+||-+|+  |.|..+..+++..|++|+++|.++..++.+++    .+..   ..+  |..+ ..       
T Consensus       163 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          163 KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLK  233 (347)
T ss_dssp             HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHH
Confidence            3447788999999998  35667777777668899999999888776654    2321   122  3321 11       


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+.+|+|+....      ....++.+.+.|++||+++++.
T Consensus       234 ~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          234 ATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECC
T ss_pred             HhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEe
Confidence            01126898887543      2357888999999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.60  E-value=0.033  Score=50.09  Aligned_cols=96  Identities=21%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             hcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CC
Q 018194          117 LIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE------DN  189 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~  189 (359)
                      ...+.++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++    .|..   .+  .|..+..+.      .+
T Consensus       159 ~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~--~d~~~~~~~~~~~~~~~  229 (339)
T 1rjw_A          159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LV--VNPLKEDAAKFMKEKVG  229 (339)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EE--ECTTTSCHHHHHHHHHS
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EE--ecCCCccHHHHHHHHhC
Confidence            3477889999999986 3667777787778999999999998887754    2321   12  233221110      03


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|+|+....      ....++...+.|++||+++++.
T Consensus       230 ~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          230 GVHAAVVTAV------SKPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCC------CHHHHHHHHHHhhcCCEEEEec
Confidence            6898876442      1356788899999999998753

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.57  E-value=0.034  Score=50.25  Aligned_cols=96  Identities=22%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ....+.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   ..+  |..+..        
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~---~~~--d~~~~~~~~~~~~~  234 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---EVF--NHREVNYIDKIKKY  234 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEE--ETTSTTHHHHHHHH
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----CCC---EEE--eCCCchHHHHHHHH
Confidence            4567889999999997  346677777776789999999999888766532    321   122  222211        


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....+|+|+.+..       ...+....++|+|||+++++.
T Consensus       235 ~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          235 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence            11236899887543       135678889999999998753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.55  E-value=0.045  Score=48.83  Aligned_cols=95  Identities=19%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             hcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C
Q 018194          117 LIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------F  186 (359)
Q Consensus       117 ~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~  186 (359)
                      ...+.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   ..+  |..+..        .
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVI--NYREEDLVERLKEIT  205 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHHT
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCccHHHHHHHHh
Confidence            557889999999994  456666777776688999999999888877652    211   122  222211        1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|+|+.+..       ...++.+.++|++||+++++.
T Consensus       206 ~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          206 GGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence            1246899887654       245678889999999998753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.51  E-value=0.033  Score=55.26  Aligned_cols=126  Identities=15%  Similarity=0.254  Sum_probs=80.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh--------cC-----CEEEEEeC---CHHHHHHHHH-----------HHHHcC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH--------SR-----ANVVGITI---NEYQVNRARL-----------HNKKAG-----  169 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~--------~~-----~~v~g~D~---s~~~~~~a~~-----------~~~~~~-----  169 (359)
                      +.-+|+|+|.|+|.....+.+.        +.     .+++.++.   +.+.+..+-.           ......     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4569999999999866655431        11     57899998   5555544322           121111     


Q ss_pred             -----CC---CCeEEEEcCCCCC-C-CC---CCccceEEeccccccc-CC--HHHHHHHHHhccCCCCEEEEEEeeeCcc
Q 018194          170 -----LD---SLCEVVCGNFLKM-P-FE---DNHFDGAYSIEATCHA-PK--LEDVYAEVFRVLKPGSLYVSYEWVTTDK  233 (359)
Q Consensus       170 -----~~---~~i~~~~~d~~~~-~-~~---~~~fD~v~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~  233 (359)
                           +.   -.+++..+|+.+. + +.   ...+|+++....-... |+  ...++..+.++++|||.+.-.       
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~-------  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF-------  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES-------
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec-------
Confidence                 01   1466778887652 2 21   4689999885522111 22  268999999999999987641       


Q ss_pred             cccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          234 YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                                              .....+++.|+++||.+....
T Consensus       211 ------------------------~~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          211 ------------------------TAAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             ------------------------CCCHHHHHHHHHTTCEEEEEE
T ss_pred             ------------------------cCcHHHHHHHHhCCeEEEecc
Confidence                                    011478889999999988755

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.49  E-value=0.033  Score=50.82  Aligned_cols=69  Identities=17%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--------CCCccceE
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF--------EDNHFDGA  194 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~fD~v  194 (359)
                      .+++|+-||.|.++..+.+. |. .+.++|+++..++..+.++      ++..++++|+.++..        ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            58999999999999988775 45 4669999999988877664      246788899987641        24579999


Q ss_pred             Eeccc
Q 018194          195 YSIEA  199 (359)
Q Consensus       195 ~~~~~  199 (359)
                      +...-
T Consensus        76 ~ggpP   80 (376)
T 3g7u_A           76 IGGPP   80 (376)
T ss_dssp             EECCC
T ss_pred             EecCC
Confidence            87654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.48  E-value=0.06  Score=48.45  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=66.6

Q ss_pred             HHhcCCC------CCCEEEEEC-CC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-
Q 018194          115 VDLIDVK------AGDRILDVG-CG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-  185 (359)
Q Consensus       115 ~~~~~~~------~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  185 (359)
                      .....+.      ++.+||-+| +| .|..+..+++..|++|+++|.+++.++.+++.    |..   .++..+ .++. 
T Consensus       137 ~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~-~~~~~  208 (346)
T 3fbg_A          137 FDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD---IVLNHK-ESLLN  208 (346)
T ss_dssp             HTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS---EEECTT-SCHHH
T ss_pred             HHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc---EEEECC-ccHHH
Confidence            3455666      899999994 54 46778888887789999999999988888763    321   222111 1110 


Q ss_pred             ----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 ----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                          .....+|+|+-..      .-...+..+.++|+|||+++.+
T Consensus       209 ~~~~~~~~g~Dvv~d~~------g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          209 QFKTQGIELVDYVFCTF------NTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             HHHHHTCCCEEEEEESS------CHHHHHHHHHHHEEEEEEEEES
T ss_pred             HHHHhCCCCccEEEECC------CchHHHHHHHHHhccCCEEEEE
Confidence                1234689888643      2345678889999999999763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.47  E-value=0.76  Score=45.50  Aligned_cols=154  Identities=10%  Similarity=0.097  Sum_probs=94.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-c--------CCEEEEEeCCHHHHHHHHHHHHHcC--------------CC-------
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-S--------RANVVGITINEYQVNRARLHNKKAG--------------LD-------  171 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~--------~~~v~g~D~s~~~~~~a~~~~~~~~--------------~~-------  171 (359)
                      +...|+-+|||.=.....|... +        +..++=+|. |+.++.=++.+...+              .+       
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  185 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL  185 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence            4568999999998888777553 2        346666666 444444333333111              00       


Q ss_pred             --CCeEEEEcCCCCCC----------C-CCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCccccc
Q 018194          172 --SLCEVVCGNFLKMP----------F-EDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA  236 (359)
Q Consensus       172 --~~i~~~~~d~~~~~----------~-~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  236 (359)
                        .+.+++..|+.+..          + ..+..-++++-.++.+++  +...+|+.+.+.  |+|.++++|...+..  .
T Consensus       186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~--~  261 (695)
T 2zwa_A          186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKG--P  261 (695)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTC--T
T ss_pred             cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCC--C
Confidence              36889999998741          1 333445677888888986  466888888764  788888877544321  1


Q ss_pred             CchHHHHHHhhhh-cCCCCC---CCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          237 ENKEHVDIIQGIE-RGDALP---GLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       237 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      ...........+. .+..+.   .+.+.++..+.|.++||+.+...++
T Consensus       262 ~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          262 FEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             TSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             CChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence            1111111222221 122222   4557899999999999998877665

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.41  E-value=0.079  Score=47.36  Aligned_cols=96  Identities=25%  Similarity=0.351  Sum_probs=66.2

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ....+.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   ..+  |..+..        
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~---~~~--d~~~~~~~~~i~~~  209 (333)
T 1wly_A          139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCH---HTI--NYSTQDFAEVVREI  209 (333)
T ss_dssp             TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEE--ECCCHHHHHHHHHH
Confidence            3557889999999995  567777777776788999999999888877653    321   122  222211        


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....+|+|+.+..-       ..++.+.++|+|||+++++.
T Consensus       210 ~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          210 TGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             HTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence            112368998865432       45678889999999998753

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.35  E-value=0.14  Score=46.63  Aligned_cols=51  Identities=18%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh--------cCCEEEEEeCCHHHHHHHHHHHH
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--------SRANVVGITINEYQVNRARLHNK  166 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D~s~~~~~~a~~~~~  166 (359)
                      +.+..+...+|+|+|+|.|.++..+.+.        ...+++.||+|+...+.-+++..
T Consensus        74 ~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           74 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3444445568999999999998877642        12489999999998876555543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.33  E-value=0.066  Score=48.61  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             HhcCCC-----CCCEEEEEC-CC-CChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---
Q 018194          116 DLIDVK-----AGDRILDVG-CG-VGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM---  184 (359)
Q Consensus       116 ~~~~~~-----~~~~vLDiG-cG-~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---  184 (359)
                      ....+.     ++.+||-+| +| .|..+..+++. .+++|+++|.+++.++.+++    .|..   .++... .++   
T Consensus       160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~  231 (363)
T 4dvj_A          160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAE  231 (363)
T ss_dssp             TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHH
T ss_pred             HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHH
Confidence            455666     788999998 55 47888888886 58899999999998888765    2321   222111 111   


Q ss_pred             --CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          185 --PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        ....+.+|+|+-.-.      -...+..+.++|+|||+++++
T Consensus       232 v~~~~~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          232 VAALGLGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHTTCSCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHhcCCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence              122357898876432      345778899999999999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.25  E-value=0.056  Score=48.88  Aligned_cols=96  Identities=17%  Similarity=0.121  Sum_probs=64.9

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ....+.++.+||-.|+  |.|..+..+++..|++|+++|.+++.++.+++.    +..   ..+  |..+..        
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~---~~~--~~~~~~~~~~~~~~  226 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAA---AGF--NYKKEDFSEATLKF  226 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCS---EEE--ETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEE--ecCChHHHHHHHHH
Confidence            4567889999999984  356667777776789999999999988877543    221   122  222111        


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....+|+|+.+..-       ..+....++|++||+++++.
T Consensus       227 ~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          227 TKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEe
Confidence            112468998865542       14677889999999998753

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.23  E-value=0.025  Score=51.22  Aligned_cols=95  Identities=11%  Similarity=0.095  Sum_probs=64.6

Q ss_pred             hcCCCCC------CEEEEECCCC-ChHH-HHHH-hhcCCE-EEEEeCCHH---HHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 018194          117 LIDVKAG------DRILDVGCGV-GGPM-RAIA-AHSRAN-VVGITINEY---QVNRARLHNKKAGLDSLCEVVCGNFLK  183 (359)
Q Consensus       117 ~~~~~~~------~~vLDiGcG~-G~~~-~~l~-~~~~~~-v~g~D~s~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~  183 (359)
                      ...+++|      .+||-+|+|. |..+ ..++ +..|++ |+++|.+++   .++.+++.    |    .+.+  |..+
T Consensus       161 ~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----G----a~~v--~~~~  230 (357)
T 2b5w_A          161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----D----ATYV--DSRQ  230 (357)
T ss_dssp             HHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----T----CEEE--ETTT
T ss_pred             hcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----C----Cccc--CCCc
Confidence            3455678      9999999864 6777 8888 777876 999999988   77777542    3    2222  3322


Q ss_pred             CCCC-----CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          184 MPFE-----DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       184 ~~~~-----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ..+.     .+.+|+|+-.-.      -...++.+.++|+|||+++++-
T Consensus       231 ~~~~~i~~~~gg~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          231 TPVEDVPDVYEQMDFIYEATG------FPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             SCGGGHHHHSCCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             cCHHHHHHhCCCCCEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence            1111     136898875432      1346788899999999998753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.22  E-value=0.025  Score=51.82  Aligned_cols=99  Identities=19%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             HhcC-CCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCC-----
Q 018194          116 DLID-VKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN---FLKM-----  184 (359)
Q Consensus       116 ~~~~-~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~-----  184 (359)
                      .... +.+|.+||-+|+|. |..+..+++..| .+|+++|.+++.++.+++    .|..   .++..+   -.++     
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~  260 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIM  260 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHH
Confidence            4457 78999999999763 677788888778 599999999998888764    2321   222221   0010     


Q ss_pred             C-CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          185 P-FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       185 ~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      . .....+|+|+-.-..      ...+....++|+|||+++++-
T Consensus       261 ~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          261 DITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred             HHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            0 112369998865421      235678889999999998753

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.20  E-value=0.017  Score=52.19  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CEEEEECCCCChHHHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEecc
Q 018194          124 DRILDVGCGVGGPMRAIAAHS--RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSIE  198 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~  198 (359)
                      .+|+|+.||.|.++..+.+..  -..|.++|+++..++..+.++.      +..++.+|+.++.   ++...+|+|+...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            589999999999999988752  1368999999999999888753      3457788988764   1112589998865


Q ss_pred             c
Q 018194          199 A  199 (359)
Q Consensus       199 ~  199 (359)
                      -
T Consensus        77 P   77 (343)
T 1g55_A           77 P   77 (343)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.18  E-value=0.039  Score=49.68  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCc
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNH  190 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~  190 (359)
                      .+.++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.    |..   .++..+- +..      .....
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~-~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GAD---AAVKSGA-GAADAIRELTGGQG  239 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCS---EEEECST-THHHHHHHHHGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCCC-cHHHHHHHHhCCCC
Confidence            678899999999875 77888888865 68999999999998887653    322   2222211 110      01236


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-.-.      -...++.+.+.|+|||+++++.
T Consensus       240 ~d~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          240 ATAVFDFVG------AQSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred             CeEEEECCC------CHHHHHHHHHHHhcCCEEEEEC
Confidence            888876432      2347888999999999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.13  E-value=0.034  Score=50.40  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC--CCCCCccc
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-KM--PFEDNHFD  192 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~fD  192 (359)
                      ...+.++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++.    |..   .++..+-. +.  ... +.+|
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~-~~~D  245 (360)
T 1piw_A          174 RNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYF-DTFD  245 (360)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSC-SCEE
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhh-cCCC
Confidence            36788999999999864 6777888887788999999999988887653    321   22222111 10  011 4799


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+-.-...    ....++.+.++|+|||+++.+.
T Consensus       246 ~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          246 LIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             EEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            998654320    0123456788999999998753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.07  E-value=0.015  Score=51.98  Aligned_cols=97  Identities=19%  Similarity=0.262  Sum_probs=64.6

Q ss_pred             hcCCCCCC-EEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccc
Q 018194          117 LIDVKAGD-RILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFD  192 (359)
Q Consensus       117 ~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  192 (359)
                      ...+.++. +||=.|+  |.|..+..+++..|++|++++.+++.++.+++.    |..  ..+-..+.... ....+.+|
T Consensus       140 ~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~d  213 (324)
T 3nx4_A          140 DAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN--RILSRDEFAESRPLEKQLWA  213 (324)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS--EEEEGGGSSCCCSSCCCCEE
T ss_pred             hcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--EEEecCCHHHHHhhcCCCcc
Confidence            34455532 4999997  357788889988889999999999988888763    321  11111121111 12335789


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|+-.-.     .  ..+..+.++|+|+|+++++
T Consensus       214 ~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          214 GAIDTVG-----D--KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             EEEESSC-----H--HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCC-----c--HHHHHHHHHHhcCCEEEEE
Confidence            8765432     1  3788999999999999875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.05  E-value=0.041  Score=49.12  Aligned_cols=56  Identities=9%  Similarity=0.123  Sum_probs=44.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG  169 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~  169 (359)
                      +.+++.. ..+|..|||.-||+|..+....+ .+.+.+|+|+++..++.+++++...+
T Consensus       243 ~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~-~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          243 EFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             HHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHHh-CCCCCEEEECCCCCCHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            3344433 36789999999999998877666 47899999999999999999876544

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.88  E-value=0.091  Score=51.96  Aligned_cols=126  Identities=12%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-----------cC--CEEEEEeC---CHHHHHHHHH-----------HHHHcCC--C-
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-----------SR--ANVVGITI---NEYQVNRARL-----------HNKKAGL--D-  171 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-----------~~--~~v~g~D~---s~~~~~~a~~-----------~~~~~~~--~-  171 (359)
                      +.-+|||+|-|+|.......+.           ..  .++++++.   +++.+..+-.           .......  + 
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3469999999999866544321           11  46899998   7777764433           1221111  0 


Q ss_pred             ----------CCeEEEEcCCCCC-C-CC---CCccceEEeccccccc-CC--HHHHHHHHHhccCCCCEEEEEEeeeCcc
Q 018194          172 ----------SLCEVVCGNFLKM-P-FE---DNHFDGAYSIEATCHA-PK--LEDVYAEVFRVLKPGSLYVSYEWVTTDK  233 (359)
Q Consensus       172 ----------~~i~~~~~d~~~~-~-~~---~~~fD~v~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~  233 (359)
                                ..+++..+|+.+. + +.   ...||+++....-... |+  -..+++.+.++++|||.+....      
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence                      1244566666542 2 11   3679999885422111 22  3588999999999999987420      


Q ss_pred             cccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          234 YEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                                               ....+++.|+++||.+....
T Consensus       220 -------------------------~~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          220 -------------------------SAGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             -------------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred             -------------------------CcHHHHHHHHhCCeEEEecc
Confidence                                     11478888999999987654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.86  E-value=0.059  Score=47.95  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE---YQVNRARLHNKKAG  169 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~---~~~~~a~~~~~~~~  169 (359)
                      +.++... ..+|..|||.-||+|..+....+. +.+.+|+|+++   ..++.+++++...+
T Consensus       233 ~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          233 ERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHh-CCCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            3344443 357899999999999988877764 78999999999   99999999876543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.85  E-value=0.0035  Score=56.59  Aligned_cols=94  Identities=20%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             hcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-------C
Q 018194          117 LIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-------E  187 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~  187 (359)
                      ...+ ++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++. .     +  .++  |..+..+       .
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~--~~~~~~~~~~~~~~~  228 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLV--NPLEEDLLEVVRRVT  228 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEE--CTTTSCHHHHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hcc--CcCccCHHHHHHHhc
Confidence            5677 899999999863 6677788887788 999999999887766442 1     1  121  2211110       1


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+|+|+-.-.      ....++...+.|+|||+++++-
T Consensus       229 ~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSG------NEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence            236899876432      1356788899999999998753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.65  E-value=0.085  Score=47.89  Aligned_cols=87  Identities=14%  Similarity=0.026  Sum_probs=59.1

Q ss_pred             CCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCH---HHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CCccc
Q 018194          123 GDRILDVGCGV-GGPMRAIAAHSRANVVGITINE---YQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE------DNHFD  192 (359)
Q Consensus       123 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~fD  192 (359)
                      +.+||-+|+|. |..+..+++..|++|+++|.++   +.++.+++.    |    .+.+  | .+ .+.      .+.+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----g----a~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----K----TNYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----T----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----C----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence            99999999843 5566667776688999999998   777766543    3    2222  3 22 211      14689


Q ss_pred             eEEecccccccCCHHHHH-HHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVY-AEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~~~~  227 (359)
                      +|+..-...      ..+ +.+.+.|+|||+++++.
T Consensus       249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEEECCCCC------THHHHHHGGGEEEEEEEEECS
T ss_pred             EEEECCCCh------HHHHHHHHHHHhcCCEEEEEe
Confidence            988654321      245 78899999999998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.61  E-value=0.19  Score=44.97  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      ........++.+||=.|+|. |.++..+++..++ .++++|.+++.++.+++.    |-.   ..+..+-.+.+      
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~  224 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAM---QTFNSSEMSAPQMQSVL  224 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCe---EEEeCCCCCHHHHHHhh
Confidence            44556778999999999975 5567777776665 568999999988887653    322   22222211111      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -....+|+|+-.-.      -...++...++|+|||.+++.-
T Consensus       225 ~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          225 RELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             GGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECC
T ss_pred             cccCCccccccccc------ccchhhhhhheecCCeEEEEEe
Confidence            11245677765332      2456788899999999998753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.57  E-value=0.098  Score=47.23  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=66.5

Q ss_pred             HHHhcCCCCC--CEEEEECC--CCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          114 AVDLIDVKAG--DRILDVGC--GVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       114 ~~~~~~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      +.....+.++  .+||-.|+  |.|..+..+++..|+ +|+++|.+++.++.+++.   .|..   ..+  |..+..   
T Consensus       150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~--d~~~~~~~~  221 (357)
T 2zb4_A          150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAI--NYKKDNVAE  221 (357)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEE--ETTTSCHHH
T ss_pred             HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEE--ecCchHHHH
Confidence            3355678889  99999998  345666677776788 999999998877766542   2321   122  222211   


Q ss_pred             ----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 ----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                          ...+.+|+++.+..       ...++.+.++|++||+++++.
T Consensus       222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence                11126898886553       256888999999999998753

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.48  E-value=0.44  Score=42.38  Aligned_cols=124  Identities=11%  Similarity=0.117  Sum_probs=76.2

Q ss_pred             CEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEeccccc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEATC  201 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~  201 (359)
                      ++|||+-||.|.++.-+.+. |. .+.++|+++..++..+.++     +  -.++.+|+.++... -...|+++...--.
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecCCCC
Confidence            58999999999999888764 54 4568999999888777664     2  36788999886421 13579887654222


Q ss_pred             c---------cCCH-HHHHH---HHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          202 H---------APKL-EDVYA---EVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       202 ~---------~~~~-~~~l~---~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      .         ..|. ..++.   ++.+.++|.  +++.|-+..-....                   .-.....+.+.|+
T Consensus        73 ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~-------------------~~~~~~~i~~~l~  131 (331)
T 3ubt_Y           73 SWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQR-------------------HNKAVQEFIQEFD  131 (331)
T ss_dssp             GTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCT-------------------TSHHHHHHHHHHH
T ss_pred             CcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeeccccccc-------------------ccchhhhhhhhhc
Confidence            1         1232 23333   344556884  55555433210000                   0112356778888


Q ss_pred             hCCCeEEE
Q 018194          269 RVGFEVVK  276 (359)
Q Consensus       269 ~aGF~~i~  276 (359)
                      +.||.+..
T Consensus       132 ~~GY~v~~  139 (331)
T 3ubt_Y          132 NAGYDVHI  139 (331)
T ss_dssp             HHTEEEEE
T ss_pred             cCCcEEEE
Confidence            99997643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.38  E-value=0.094  Score=47.14  Aligned_cols=94  Identities=23%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             HhcCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CC
Q 018194          116 DLIDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FE  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~  187 (359)
                      +...+.++.+||-+|+ | .|..+..+++..|++|+++ .+++.++.+++.    |.    ..+. +-.+..      ..
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga----~~i~-~~~~~~~~~~~~~~  213 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GA----TPID-ASREPEDYAAEHTA  213 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TS----EEEE-TTSCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CC----CEec-cCCCHHHHHHHHhc
Confidence            5667889999999994 3 4778888888778999999 888888777653    32    2222 221111      12


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...+|+|+-.-.     .  ..+....+.|+|||+++++
T Consensus       214 ~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          214 GQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             TSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEES
T ss_pred             CCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEE
Confidence            246899876433     1  4678888999999999874

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.31  E-value=0.097  Score=46.75  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecc
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIE  198 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~  198 (359)
                      +.+++|+.||.|.++..+.+. |. .+.++|+++..++..+.++...      .  .+|+.++.. .-..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~------~--~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------P--EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------C--BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC------C--cCCHHHcCHhhCCCCCEEEECC
Confidence            469999999999999998875 44 5778999999999888876321      1  577776531 113589998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.24  E-value=0.013  Score=51.84  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             CCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCccceEEe
Q 018194          120 VKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF-LKMPFEDNHFDGAYS  196 (359)
Q Consensus       120 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~  196 (359)
                      +++|.+||-+|+  |.|..+..+++..|++|+++|.++..++.+++    .|..   ..+..+- .+..-.-+.+|+|+.
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceEEEE
Confidence            788999999998  35677788888778999999999988877754    2321   2222110 111000046899887


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       ..-       ..++...+.|+|||+++.+.
T Consensus       196 -~g~-------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          196 -VRG-------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -CSC-------TTHHHHHTTEEEEEEEEEC-
T ss_pred             -CCH-------HHHHHHHHhhccCCEEEEEe
Confidence             321       25678899999999998753

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.23  E-value=0.15  Score=45.33  Aligned_cols=96  Identities=18%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             HhcCCCCCCEEEEEC-CC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccc
Q 018194          116 DLIDVKAGDRILDVG-CG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFD  192 (359)
Q Consensus       116 ~~~~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD  192 (359)
                      +...+.+|.+||=+| +| .|..+..+++..|++|++++ ++..++.+++    .|..   .++..+-.+ ..-.-..+|
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D  217 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVD  217 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEE
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCC
Confidence            667889999999997 55 47788888887789999998 5554665554    3432   222222111 110114689


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|+-.-.      -. .+....++|+|||+++.+
T Consensus       218 ~v~d~~g------~~-~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          218 AVIDLVG------GD-VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             EEEESSC------HH-HHHHHGGGEEEEEEEEEC
T ss_pred             EEEECCC------cH-HHHHHHHhccCCCEEEEe
Confidence            8876432      12 237889999999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.16  E-value=0.038  Score=50.08  Aligned_cols=99  Identities=19%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             hcCCC-CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccce
Q 018194          117 LIDVK-AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK-MPFEDNHFDG  193 (359)
Q Consensus       117 ~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~  193 (359)
                      ...+. +|.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++.   .|..   .++..+-.+ +.-..+.+|+
T Consensus       174 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~vi~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          174 HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD---LGAD---DYVIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT---SCCS---CEEETTCHHHHHHSTTTEEE
T ss_pred             hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH---cCCc---eeeccccHHHHHHhcCCCCE
Confidence            45677 899999999863 6677778877788999999998877766522   2321   122111000 0001136899


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+-.-.-.      ..++...++|+|||+++.+.
T Consensus       248 vid~~g~~------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          248 VIDTVPVH------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEECCCSC------CCSHHHHTTEEEEEEEEECS
T ss_pred             EEECCCCh------HHHHHHHHHhccCCEEEEeC
Confidence            87644321      12456778999999998753

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.15  E-value=0.17  Score=47.41  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------
Q 018194          118 IDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------  185 (359)
Q Consensus       118 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------  185 (359)
                      ..+++|.+||=+|+ | .|..+..+++..|+++++++.++..++.+++.    |..   .++...-.+..          
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEECH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccch
Confidence            57789999999997 4 47788888887889999999999988887653    321   22221111110          


Q ss_pred             -------------CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 -------------FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 -------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                                   .....+|+|+-.-.     .  ..+....++|+|||+++++-
T Consensus       297 ~~~~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEEe
Confidence                         11247898876432     1  56788899999999999753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.00  E-value=0.046  Score=49.71  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=62.2

Q ss_pred             hcCCC-CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CCCCCCCccce
Q 018194          117 LIDVK-AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-KMPFEDNHFDG  193 (359)
Q Consensus       117 ~~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~  193 (359)
                      ...+. ++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++.   .|..   .++..+-. .+.-..+.+|+
T Consensus       181 ~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~~~~~D~  254 (366)
T 1yqd_A          181 YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAAAGTLDG  254 (366)
T ss_dssp             HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHTTTCEEE
T ss_pred             hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHhhCCCCE
Confidence            45667 899999999863 5667777777789999999999877766532   2321   22211100 00000136899


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+..-....      .++...+.|++||+++.+.
T Consensus       255 vid~~g~~~------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          255 IIDTVSAVH------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEECCSSCC------CSHHHHHHEEEEEEEEECC
T ss_pred             EEECCCcHH------HHHHHHHHHhcCCEEEEEc
Confidence            886543221      2356678899999998753

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.04  Score=49.21  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             hcCCCCCC-EEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccc
Q 018194          117 LIDVKAGD-RILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFD  192 (359)
Q Consensus       117 ~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  192 (359)
                      ...+.++. +||-+|+  |.|..+..+++..|++|++++.+++.++.+++    .|...-+.....+.... ....+.+|
T Consensus       143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~d  218 (328)
T 1xa0_A          143 EHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWA  218 (328)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEE
T ss_pred             hcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhcCCccc
Confidence            34677775 8999997  35778888888778999999999888777754    23211111111110000 12234689


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|+-.-.     .  ..+....+.|++||+++++
T Consensus       219 ~vid~~g-----~--~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          219 AAVDPVG-----G--RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             EEEECST-----T--TTHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCc-----H--HHHHHHHHhhccCCEEEEE
Confidence            8876543     1  2467888999999999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.56  E-value=0.041  Score=49.16  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=64.9

Q ss_pred             hcCCCCCC-EEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccc
Q 018194          117 LIDVKAGD-RILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFD  192 (359)
Q Consensus       117 ~~~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD  192 (359)
                      ...+.++. +||-+|+  |.|..+..+++..|++|++++.+++.++.+++.    |...-+.....+.... ....+.+|
T Consensus       144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~l----Ga~~v~~~~~~~~~~~~~~~~~~~d  219 (330)
T 1tt7_A          144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASEVISREDVYDGTLKALSKQQWQ  219 (330)
T ss_dssp             HTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSEEEEHHHHCSSCCCSSCCCCEE
T ss_pred             hcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcEEEECCCchHHHHHHhhcCCcc
Confidence            34677775 8999997  356777888887788999999998888777653    3211011101111111 12234689


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+-.-.     .  ..+....++|+|||+++++-
T Consensus       220 ~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          220 GAVDPVG-----G--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEEESCC-----T--HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCc-----H--HHHHHHHHhhcCCCEEEEEe
Confidence            8876432     2  36788999999999998753

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=93.53  E-value=0.38  Score=44.37  Aligned_cols=45  Identities=13%  Similarity=0.160  Sum_probs=35.7

Q ss_pred             CCEEEEECCCCChHHHHHHhh---c---CCEEEEEeCCHHHHHHHHHHHHH
Q 018194          123 GDRILDVGCGVGGPMRAIAAH---S---RANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~---~---~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      ..+|+|+|+|+|.++..+.+.   .   ..+++.||+|+.+.+.-+++...
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            469999999999988887652   1   24899999999988777776654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.40  E-value=0.34  Score=43.36  Aligned_cols=100  Identities=20%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             HHhcCCCCCCEEEEECCCCC-hHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------C
Q 018194          115 VDLIDVKAGDRILDVGCGVG-GPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------F  186 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~  186 (359)
                      ++....++|.+||=+|+|.+ ..+..+++ ..+++|+++|.+++.++.+++.    |-.   ..+...-.+..      .
T Consensus       156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~---~~i~~~~~~~~~~v~~~t  228 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GAD---VTINSGDVNPVDEIKKIT  228 (348)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCS---EEEEC-CCCHHHHHHHHT
T ss_pred             ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCe---EEEeCCCCCHHHHhhhhc
Confidence            34557889999999999864 45555555 4578999999999988776654    221   22221111110      1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ....+|.++....      -...+....+.|++||++++.-
T Consensus       229 ~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          229 GGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             TSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence            1234566554321      2456788899999999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.17  E-value=0.45  Score=36.39  Aligned_cols=88  Identities=17%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~  195 (359)
                      ..+|+=+|||.  ++..+++   ..+.+|+++|.+++.++.+++.        .+.++.+|..+..    ..-..+|+|+
T Consensus         7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhcCcccCCEEE
Confidence            35788899864  4444443   3478999999999988876541        3578899987632    1224678887


Q ss_pred             ecccccccCCH--HHHHHHHHhccCCCCEEEE
Q 018194          196 SIEATCHAPKL--EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       196 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~  225 (359)
                      +..     ++.  ...+-...+.+.|+..++.
T Consensus        77 ~~~-----~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           77 LTI-----PNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             EEC-----CChHHHHHHHHHHHHHCCCCeEEE
Confidence            643     222  2223445666788887765

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.11  E-value=0.29  Score=45.68  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             cCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----------
Q 018194          118 IDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----------  184 (359)
Q Consensus       118 ~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----------  184 (359)
                      ..+.+|.+||-.|+ | .|..+..+++..|+++++++.+++.++.+++    .|...-+.....|..+.           
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchh
Confidence            67889999999997 3 4677788888778999999999998887754    23221111111121100           


Q ss_pred             ---------CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          185 ---------PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       185 ---------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                               ......+|+|+-.-.-       ..++...++|++||+++++.
T Consensus       292 ~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          292 GRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESC
T ss_pred             hhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEe
Confidence                     0012468998765431       36788889999999999853

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.02  E-value=1.6  Score=40.97  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM  184 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~  184 (359)
                      ..+++|+-||.|.++.-+.+. |. .|.++|+++..++..+.++..   .+...++.+|+.++
T Consensus        88 ~~~viDLFaG~GGlslG~~~a-G~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI-GGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT-TEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhh
Confidence            368999999999999888774 44 578999999988877665421   12346677888764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.90  E-value=0.056  Score=49.30  Aligned_cols=94  Identities=21%  Similarity=0.197  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEC-CC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceE
Q 018194          120 VKAGDRILDVG-CG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v  194 (359)
                      +.+|.+||-.| +| .|..+..+++..|++|++++ ++..++.+++    .|..   .++..+-.+..   .....+|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DVIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence            77899999999 34 47788888887789999998 6666666543    3321   22221111110   011468988


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +-.-.     .....+....++|++||+++.+
T Consensus       253 id~~g-----~~~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          253 LDNVG-----GSTETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             EESSC-----TTHHHHGGGGBCSSSCCEEEES
T ss_pred             EECCC-----ChhhhhHHHHHhhcCCcEEEEe
Confidence            76432     2224567788899999999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=92.85  E-value=0.6  Score=41.98  Aligned_cols=97  Identities=20%  Similarity=0.278  Sum_probs=57.1

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEE-eCCHH---HHHHHHHHHHHcCCCCCeEEEEc------CCCC
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGI-TINEY---QVNRARLHNKKAGLDSLCEVVCG------NFLK  183 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~-D~s~~---~~~~a~~~~~~~~~~~~i~~~~~------d~~~  183 (359)
                      ....+.+|.+||-+|+  |.|..+..+++..|++++++ +.++.   ..+.++    +.|..   .++..      ++.+
T Consensus       161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~  233 (357)
T 1zsy_A          161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKN  233 (357)
T ss_dssp             HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGG
T ss_pred             HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHH
Confidence            3457889999999997  35778888888778877665 44332   233333    33422   22221      1111


Q ss_pred             CCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..-..+.+|+|+-.-.     . .. +.+..++|+|||+++++
T Consensus       234 ~~~~~~~~Dvvid~~g-----~-~~-~~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          234 FFKDMPQPRLALNCVG-----G-KS-STELLRQLARGGTMVTY  269 (357)
T ss_dssp             TTSSSCCCSEEEESSC-----H-HH-HHHHHTTSCTTCEEEEC
T ss_pred             HHhCCCCceEEEECCC-----c-HH-HHHHHHhhCCCCEEEEE
Confidence            1111124898875432     1 12 24578999999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.63  E-value=0.069  Score=48.44  Aligned_cols=99  Identities=17%  Similarity=0.082  Sum_probs=57.4

Q ss_pred             CCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          123 GDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       123 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      +.+|+=+|+|. |..+..++...|++|+++|.++..++.+++....     .+.....+..++.-.-..+|+|+..-...
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            48999999863 4444455555678999999999988877665432     12222211111100012579998755433


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..+.+.-+.++..+.++|||.++.+
T Consensus       242 ~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          242 GRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             TSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CCCCCeecCHHHHhhCCCCCEEEEE
Confidence            2111111234567889999988753

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=92.58  E-value=0.52  Score=42.69  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=61.4

Q ss_pred             CCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccce
Q 018194          121 KAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHFDG  193 (359)
Q Consensus       121 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~  193 (359)
                      .+|.+||=+|++  .|..+..+++..|++|+++. ++..++.+++    .|..   .++...-.++.     ...+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAE---EVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCc---EEEECCCchHHHHHHHHccCCccE
Confidence            789999999983  67888889988889999885 8887776654    3321   23322211110     11245898


Q ss_pred             EEecccccccCCHHHHHHHHHhcc-CCCCEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVL-KPGSLYVSY  226 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~  226 (359)
                      |+-.-.      -...+..+.+.| ++||+++++
T Consensus       235 v~d~~g------~~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          235 ALDCIT------NVESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             EEESSC------SHHHHHHHHHHSCTTCEEEEES
T ss_pred             EEECCC------chHHHHHHHHHhhcCCCEEEEE
Confidence            875432      235577788888 699999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.35  E-value=0.075  Score=48.53  Aligned_cols=100  Identities=16%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|+=+|+|. |.....+++..|++|+++|.++..++.+++..   +.  .+.....+..++.-.-...|+|+..-..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence            578999999853 44444444456889999999998877765532   21  1211111111110001257988874322


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+.-+.++..+.+||||.++.+
T Consensus       242 p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          242 PGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             TTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCCCCcceecHHHHhcCCCCcEEEEE
Confidence            21111111245677889999988753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.20  E-value=0.21  Score=44.65  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             CEEEEECCCCChHHHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEec
Q 018194          124 DRILDVGCGVGGPMRAIAAHSR---ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYSI  197 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~  197 (359)
                      .+++|+-||.|.++..+.+. |   ..|.++|+++..++..+.++.      ...+..+|+.++.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence            48999999999999888764 3   357799999999888777652      2456788888764   222368999865


Q ss_pred             c
Q 018194          198 E  198 (359)
Q Consensus       198 ~  198 (359)
                      .
T Consensus        77 p   77 (333)
T 4h0n_A           77 P   77 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.88  E-value=0.61  Score=40.81  Aligned_cols=71  Identities=10%  Similarity=0.082  Sum_probs=52.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CC-CCccce
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRAN---VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FE-DNHFDG  193 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~-~~~fD~  193 (359)
                      ....+++|+-||.|.++..+.+. |.+   |.++|+++..++..+.+..      ...+..+|+.++.   ++ .+.+|+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCE
Confidence            45679999999999999888774 443   5899999998887666532      3467889998764   11 136899


Q ss_pred             EEecc
Q 018194          194 AYSIE  198 (359)
Q Consensus       194 v~~~~  198 (359)
                      ++...
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=91.74  E-value=1.8  Score=39.18  Aligned_cols=98  Identities=12%  Similarity=0.028  Sum_probs=65.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .+.+||.++.+.|.++..++..   .++.+.-|--.....+.+.+..++++ ++++... ..+   ....||+|+.... 
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~---~~~~~~~v~~~lp-  109 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD---YPQQPGVVLIKVP-  109 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC---CCSSCSEEEEECC-
T ss_pred             CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc---cccCCCEEEEEcC-
Confidence            4568999999999999988764   33445335544455566677777654 3555432 222   2367999887442 


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+.......|..+...|+||+.+++..
T Consensus       110 k~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          110 KTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             SCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            223346778899999999999997653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.70  E-value=0.071  Score=46.93  Aligned_cols=54  Identities=22%  Similarity=0.357  Sum_probs=39.8

Q ss_pred             CeEEEEcCCCC-CC-CCCCccceEEeccccccc--------------------CCHHHHHHHHHhccCCCCEEEEE
Q 018194          173 LCEVVCGNFLK-MP-FEDNHFDGAYSIEATCHA--------------------PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       173 ~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++.++++|+.+ +. +++++||+|+++--....                    .....+++++.++|||||.+++.
T Consensus        21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            57899999877 22 567899999997544321                    11345788999999999999874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.50  E-value=1.4  Score=38.91  Aligned_cols=79  Identities=11%  Similarity=-0.015  Sum_probs=54.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .+.+||=.|++.| ++..+++.   .|.+|++++.++..++...+.....+...++.++..|+.+..     +     ..
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            3668888887755 44444431   478999999999988877776665543347899999998742     0     01


Q ss_pred             CccceEEeccccc
Q 018194          189 NHFDGAYSIEATC  201 (359)
Q Consensus       189 ~~fD~v~~~~~l~  201 (359)
                      +..|+++.+..+.
T Consensus        86 g~id~lv~nAg~~   98 (319)
T 3ioy_A           86 GPVSILCNNAGVN   98 (319)
T ss_dssp             CCEEEEEECCCCC
T ss_pred             CCCCEEEECCCcC
Confidence            4679998877654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.41  E-value=0.12  Score=47.11  Aligned_cols=100  Identities=17%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++++|+=+|+|. |.....++...|++|+++|.++..++.+++..   +.  .+.....+..++.-.-..+|+|+..-..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence            458999999852 33333344446889999999998777665432   21  1222111111111001357988775443


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+.-+.+++.+.+||||.++.+
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEEC
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEE
Confidence            21111111246777889999988753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.78  E-value=0.83  Score=36.53  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=54.1

Q ss_pred             CCEEEEECCCCChHHHHHHh---hc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C-CCCccce
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----F-EDNHFDG  193 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~-~~~~fD~  193 (359)
                      +++|+=+|||  ..+..+++   .. +.+|+++|.+++.++.+++    .+    +.++.+|..+..    . .-..+|+
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence            5689999875  44444443   34 7899999999988776543    22    456777775421    1 2346888


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      |+....  . +.....+-...+.+.|++.++.
T Consensus       109 vi~~~~--~-~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          109 VLLAMP--H-HQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             EEECCS--S-HHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEeCC--C-hHHHHHHHHHHHHHCCCCEEEE
Confidence            887431  0 1122233345556677777765

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=90.74  E-value=0.17  Score=45.83  Aligned_cols=100  Identities=15%  Similarity=0.202  Sum_probs=59.1

Q ss_pred             cCCCCC-CEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCC-----C
Q 018194          118 IDVKAG-DRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF---LKMP-----F  186 (359)
Q Consensus       118 ~~~~~~-~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~-----~  186 (359)
                      ..+.+| .+||-+|+ | .|..+..+++..|++++++.-+++.+...++.+.+.|..   .++..+-   .++.     .
T Consensus       162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~  238 (364)
T 1gu7_A          162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEW  238 (364)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHH
T ss_pred             hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHH
Confidence            477889 99999997 3 477888888877889988875554321111222233422   2222110   1110     0


Q ss_pred             ---CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 ---EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                         ....+|+|+-.-.      -.... ...++|+|||+++++-
T Consensus       239 t~~~~~g~Dvvid~~G------~~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          239 IKQSGGEAKLALNCVG------GKSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHTCCEEEEEESSC------HHHHH-HHHHTSCTTCEEEECC
T ss_pred             hhccCCCceEEEECCC------chhHH-HHHHHhccCCEEEEec
Confidence               1246899876432      12233 6789999999998753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=90.70  E-value=0.075  Score=48.29  Aligned_cols=96  Identities=21%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--C----------------
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF--L----------------  182 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~----------------  182 (359)
                      ++.+|+=+|+|. |..+..++...|++|+++|.++..++.+++.    |    .++...+.  .                
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l----G----a~~~~l~~~~~~~~gya~~~~~~~~~~  254 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV----G----AQWLDLGIDAAGEGGYARELSEAERAQ  254 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT----T----CEECCCC-------------CHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccchhhhhHHHHhh
Confidence            568999999984 5555666666789999999999887776542    2    22322110  0                


Q ss_pred             ---CCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          183 ---KMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       183 ---~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                         .+.-.-...|+|+..-.+..-+.+.-+-+++.+.+|||+.++=
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD  300 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD  300 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence               0000014679998753222111122233688889999987764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.55  E-value=0.1  Score=47.77  Aligned_cols=96  Identities=21%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-------------CCC--
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-------------KMP--  185 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-------------~~~--  185 (359)
                      ++.+|+=+|+|. |..+..++...|++|+++|.++..++.+++.    |    .++...+..             .++  
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~----G----~~~~~~~~~~~~d~~~~~~ya~e~s~~  260 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL----G----AKFIAVEDEEFKAAETAGGYAKEMSGE  260 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT----T----CEECCCCC-----------------CH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc----C----Cceeecccccccccccccchhhhcchh
Confidence            568999999984 5566666666789999999999887776652    2    122221110             000  


Q ss_pred             --------CC--CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          186 --------FE--DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       186 --------~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                              +.  -...|+|+..-.+.--+.+.-+-+++.+.+|||..++=
T Consensus       261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVD  310 (405)
T 4dio_A          261 YQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVD  310 (405)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred             hhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEE
Confidence                    00  03569998653222111222233688899999988874

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.33  E-value=0.45  Score=44.83  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             CCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          120 VKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      ..+|++|+=+|+|. |......++..|++|+++|.++..++.+++.    |    +++  .+..+.   -...|+|+..-
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~----G----a~~--~~l~e~---l~~aDvVi~at  337 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME----G----FDV--VTVEEA---IGDADIVVTAT  337 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CEE--CCHHHH---GGGCSEEEECS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CEE--ecHHHH---HhCCCEEEECC
Confidence            55789999999864 4444444555688999999999877665432    3    222  122221   13579988754


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...++-+     .+..+.+||||+++.+
T Consensus       338 gt~~~i~-----~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          338 GNKDIIM-----LEHIKAMKDHAILGNI  360 (494)
T ss_dssp             SSSCSBC-----HHHHHHSCTTCEEEEC
T ss_pred             CCHHHHH-----HHHHHhcCCCcEEEEe
Confidence            3222211     3566779999999863

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.19  E-value=1.9  Score=32.66  Aligned_cols=66  Identities=5%  Similarity=0.014  Sum_probs=44.9

Q ss_pred             CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~  195 (359)
                      .++|+=+|||  .++..+++   ..|.+|+++|.+++.++.+++.        .+.++.+|..+..    .....+|+|+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            4579999985  45555554   2478999999999887766542        2578889987632    1234678887


Q ss_pred             ecc
Q 018194          196 SIE  198 (359)
Q Consensus       196 ~~~  198 (359)
                      ...
T Consensus        76 ~~~   78 (141)
T 3llv_A           76 ITG   78 (141)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=90.16  E-value=4.2  Score=34.79  Aligned_cols=79  Identities=18%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  188 (359)
                      .+++||=.|++ |.++..+++.   .|.+|++++.++..++...+.....+.+.++.++.+|+.+..     +.     .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35678877755 5555555542   478999999998877766666655554456888999997742     00     1


Q ss_pred             CccceEEeccccc
Q 018194          189 NHFDGAYSIEATC  201 (359)
Q Consensus       189 ~~fD~v~~~~~l~  201 (359)
                      +.+|+|+.+....
T Consensus       110 g~iD~vi~~Ag~~  122 (279)
T 1xg5_A          110 SGVDICINNAGLA  122 (279)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689988776543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=89.96  E-value=0.34  Score=43.47  Aligned_cols=93  Identities=9%  Similarity=0.104  Sum_probs=57.2

Q ss_pred             CCC-CEEEEE-CCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--C----CCCcc
Q 018194          121 KAG-DRILDV-GCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--F----EDNHF  191 (359)
Q Consensus       121 ~~~-~~vLDi-GcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~f  191 (359)
                      .++ .+||=. |+| .|..+..+++..|++|+++|.+++.++.+++.    |..   ..+..+-.++.  .    ....+
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI----GAA---HVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHH----TCS---EEEETTSTTHHHHHHHHHHHHCC
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCC---EEEECCcHHHHHHHHHHhcCCCC
Confidence            345 566644 333 35566777777789999999999988887653    321   22222211110  0    01368


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|+-.-.-       ..+..+.++|+|||+++++.
T Consensus       235 D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          235 RIFLDAVTG-------PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             CEEEESSCH-------HHHHHHHHHSCTTCEEEECC
T ss_pred             cEEEECCCC-------hhHHHHHhhhcCCCEEEEEe
Confidence            988865431       23477889999999999753

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.87  E-value=2.5  Score=35.84  Aligned_cols=104  Identities=12%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             CCCEEEEECCC--CCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC----
Q 018194          122 AGDRILDVGCG--VGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE----  187 (359)
Q Consensus       122 ~~~~vLDiGcG--~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----  187 (359)
                      .++++|=.|++  .|.   ++..|++ .|++|+.++.++...+...+.....+ ..++.++.+|+.+..     +.    
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            36788988876  332   3444444 37899999988766666655554433 226899999998753     00    


Q ss_pred             -CCccceEEecccccc-------cC--C---HH-----------HHHHHHHhccCCCCEEEEEE
Q 018194          188 -DNHFDGAYSIEATCH-------AP--K---LE-----------DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 -~~~fD~v~~~~~l~~-------~~--~---~~-----------~~l~~~~~~LkpgG~l~~~~  227 (359)
                       .+..|+++.+..+..       +.  +   +.           .+++.+...++++|.++.+.
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence             136898887765432       10  1   11           25567777888889888754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.53  E-value=0.16  Score=46.47  Aligned_cols=42  Identities=24%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARL  163 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~  163 (359)
                      ++.+|+=+|+|. |..+..+++..|++|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            578999999984 555556666678899999999877666543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.48  E-value=1.4  Score=37.42  Aligned_cols=99  Identities=13%  Similarity=0.042  Sum_probs=63.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----------CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----------ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~  188 (359)
                      .++++|=.|++.| ++..+++.   .|++|+.+|.++..++...+..     ..++.++.+|+.+..-          .-
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678888887654 44444431   4789999999988777665543     2368899999987420          01


Q ss_pred             CccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..|+++.+.......        ++           ..+.+.+...++++|.++.+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            4689888776544321        11           12455666777778888765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.19  E-value=3.5  Score=35.39  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITIN------------EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-  185 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  185 (359)
                      .++++|=.|++.| ++..+++.   .|++|+.+|.+            ...++.+.......+  .++.++.+|+.+.. 
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            4678888887654 44444431   47899999987            666666655555543  46899999998742 


Q ss_pred             ----CC-----CCccceEEecccccccC------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          186 ----FE-----DNHFDGAYSIEATCHAP------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ----~~-----~~~fD~v~~~~~l~~~~------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                          +.     -+..|+++.+.......      ++           ..+++.+...++.+|.++.+
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence                00     13689988876553321      12           23556677778888988764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=89.11  E-value=4.6  Score=34.53  Aligned_cols=102  Identities=17%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITIN-EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|++.| ++..+++.   .|++|+.++.+ ....+...+.....+  .++.++.+|+.+..     +.     
T Consensus        30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4678888887654 44444431   47899998654 455555555554443  46889999998742     00     


Q ss_pred             CCccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -+..|+++.+.......        ++           ..+++.+.+.++++|.++.+
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            13689988876543321        11           23566777788889988875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.93  E-value=1  Score=41.50  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~  195 (359)
                      .++|+=+|+|  .++..+++   ..+..|+++|.+++.++.+++.    +    +.++.+|+.+..    ..-...|+|+
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----g----~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----T----CCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----C----CeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            4578888885  44444443   3478999999999999887642    2    568899998742    2235678887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...   -+.....+....+.+.|...++..
T Consensus        74 v~~~---~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           74 NAID---DPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             ECCS---SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ECCC---ChHHHHHHHHHHHHhCCCCeEEEE
Confidence            6432   012334455666778888877763

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=88.74  E-value=2.2  Score=36.29  Aligned_cols=85  Identities=15%  Similarity=0.037  Sum_probs=51.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  188 (359)
                      .++++|=.|++ |.++..+++.   .|.+|++++.++...+...+.........++.++.+|+.+..     +.     -
T Consensus         6 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35678888865 4455554432   478999999998766554443322111235788999998732     00     1


Q ss_pred             CccceEEecccccccCCHH
Q 018194          189 NHFDGAYSIEATCHAPKLE  207 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~  207 (359)
                      +..|+++.+.......++.
T Consensus        85 g~id~lv~~Ag~~~~~~~~  103 (267)
T 2gdz_A           85 GRLDILVNNAGVNNEKNWE  103 (267)
T ss_dssp             SCCCEEEECCCCCCSSSHH
T ss_pred             CCCCEEEECCCCCChhhHH
Confidence            3579998877654433443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=88.68  E-value=4.3  Score=35.15  Aligned_cols=102  Identities=12%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             CCCEEEEECCCCC-hH----HHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----
Q 018194          122 AGDRILDVGCGVG-GP----MRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----  186 (359)
Q Consensus       122 ~~~~vLDiGcG~G-~~----~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----  186 (359)
                      .++++|=.|++.| .+    +..|++ .|++|+.++.++...+.+++.....+   ++.++.+|+.+..     +     
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAARE-AGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHH-TTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            4678999997743 23    344444 47899999999766655555544433   5789999998742     0     


Q ss_pred             CCCccceEEecccccc----------cC--CH-----------HHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCH----------AP--KL-----------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~----------~~--~~-----------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .-+..|+++.+..+..          .+  ++           ..+++.+...++.+|.++.+.
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            0146899988766542          10  11           235566777788889888754

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.55  E-value=0.15  Score=47.00  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHH
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRAR  162 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~  162 (359)
                      ++.+|+=+|+|. |..+..+++..|++|+++|.++..++.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            578999999974 55556666667889999999998777654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=88.26  E-value=2.7  Score=36.47  Aligned_cols=78  Identities=10%  Similarity=-0.084  Sum_probs=52.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C----C------C
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P----F------E  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~----~------~  187 (359)
                      .+.+||=.|++ |.++..+++.   .|++|++++.++...+.+.+.....+ ..++.++.+|+.+. .    +      .
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            35678877765 4455555442   47899999999988777666655443 34789999999875 2    0      0


Q ss_pred             CCccceEEeccccc
Q 018194          188 DNHFDGAYSIEATC  201 (359)
Q Consensus       188 ~~~fD~v~~~~~l~  201 (359)
                      .+..|+++.+..+.
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            14689998877654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.14  E-value=2.2  Score=36.31  Aligned_cols=78  Identities=18%  Similarity=0.017  Sum_probs=54.3

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .|+.+|--|++.| +.+.+++   .-|++|+.+|.+++.++...+.....+  .++.++.+|+.+..          -.-
T Consensus         8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4667777776655 4444443   147999999999999888777776665  46888899987732          112


Q ss_pred             CccceEEecccccc
Q 018194          189 NHFDGAYSIEATCH  202 (359)
Q Consensus       189 ~~fD~v~~~~~l~~  202 (359)
                      +..|+++.+..+.+
T Consensus        85 G~iDiLVNNAG~~~   98 (255)
T 4g81_D           85 IHVDILINNAGIQY   98 (255)
T ss_dssp             CCCCEEEECCCCCC
T ss_pred             CCCcEEEECCCCCC
Confidence            57899988776544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.82  E-value=4.2  Score=35.14  Aligned_cols=102  Identities=20%  Similarity=0.228  Sum_probs=63.0

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEY-QVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|++.| ++..+++.   .|++|+.++.++. ..+...+.....+  .++.++.+|+.+..     +.     
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4678888887654 44444431   4789999998765 3444444444333  46899999998742     10     


Q ss_pred             CCccceEEeccccccc-------C--CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHA-------P--KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~-------~--~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -+..|+++.+......       +  ++           ..+++.+.+.++.+|.++.+
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence            1368998877543321       1  11           23566777788889988764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=87.72  E-value=4.5  Score=34.44  Aligned_cols=103  Identities=25%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITI-NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|++. .++..+++.   .|++|+.++. ++...+...+.....+  .++.++.+|+.+..     +.     
T Consensus        17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356788777664 444444431   4789998775 4555555555555443  46899999998742     00     


Q ss_pred             CCccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -+..|+++.+.......        ++           ..+.+.+.+.++++|.++.+.
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            13679988776554321        11           235567778888899888753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=87.51  E-value=4.7  Score=34.10  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=67.1

Q ss_pred             CCCEEEEECCCC--C--h-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----
Q 018194          122 AGDRILDVGCGV--G--G-PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----  186 (359)
Q Consensus       122 ~~~~vLDiGcG~--G--~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----  186 (359)
                      .|+++|=-|++.  |  . .+..|++ -|++|+.+|.++..++.+.+..++.+- .++.+++.|+.+..     +     
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~-~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQ-LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            477889888643  3  2 3444555 479999999999888887777766542 36889999997732     0     


Q ss_pred             CCCccceEEeccccccc-------C--CHH--------------HHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHA-------P--KLE--------------DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~-------~--~~~--------------~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .-+..|+++.+..+...       .  +.+              ...+.....++.||.++.+.
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis  146 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT  146 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            11578988876543221       1  111              12244556778899988654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=87.48  E-value=0.24  Score=44.03  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=39.9

Q ss_pred             CeEEEEcCCCC-CC-CCCCccceEEeccccccc--------------CCHHHHHHHHHhccCCCCEEEEE
Q 018194          173 LCEVVCGNFLK-MP-FEDNHFDGAYSIEATCHA--------------PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       173 ~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..++++|..+ +. +++++||+|++.--....              ......+.++.++|||||.+++.
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            56788888765 33 567889999987443221              13568899999999999999884

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.10  E-value=1.9  Score=36.63  Aligned_cols=102  Identities=17%  Similarity=0.069  Sum_probs=64.1

Q ss_pred             CCCEEEEECCCCChHHHHHHh---h-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---H-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .+++||=.| |+|.++..+++   . .+.+|++++.++...+...+.....+  .++.++.+|+.+..     +.     
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            356777666 55666666654   2 47899999999887766655555443  46889999998742     00     


Q ss_pred             CCccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+.+|+|+.+.......        ++           ..+++.+.+.++++|+++.+
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~  137 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  137 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence            13689888765443211        11           13555666677777887764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=86.89  E-value=4.3  Score=35.13  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITIN--EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s--~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----  187 (359)
                      .++++|=.|++. .++..+++.   .|++|+.++.+  ....+...+.....+  .++.++.+|+.+..     +.    
T Consensus        48 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDS-GIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            367888888664 444444431   47899999986  334444544444443  46888999987742     00    


Q ss_pred             -CCccceEEeccccccc-C-----C---H-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 -DNHFDGAYSIEATCHA-P-----K---L-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 -~~~fD~v~~~~~l~~~-~-----~---~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                       -+..|+++.+...... .     +   +           ..+++.+...++++|.++.+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence             1468998877665321 1     1   1           23556677788889988875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=86.87  E-value=9.2  Score=32.49  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=58.1

Q ss_pred             CEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          124 DRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++||=.|+  |.++..+++.   .+.+|++++-++........        .+++++.+|+.++.  -..+|+|+.....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCCc
Confidence            68999994  8888777653   36799999998865543322        35899999998866  4578998876655


Q ss_pred             cccCCH--HHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKL--EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~--~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ....+.  ..+++.+.+.-..-.++++.
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~  101 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYL  101 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEe
Confidence            433322  23344333321222456553

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.56  E-value=2.8  Score=35.94  Aligned_cols=77  Identities=16%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---------CCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF---------EDN  189 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~  189 (359)
                      .++++|=.|++ |.++..+++.   .|++|+.+|.++..++...+.....+  .++.++.+|+.+..-         ..+
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35678877765 4455554442   47899999999887776666655543  468999999987530         014


Q ss_pred             ccceEEeccccc
Q 018194          190 HFDGAYSIEATC  201 (359)
Q Consensus       190 ~fD~v~~~~~l~  201 (359)
                      ..|+++.+....
T Consensus       109 ~iD~lvnnAg~~  120 (275)
T 4imr_A          109 PVDILVINASAQ  120 (275)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689988876643

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=85.51  E-value=0.73  Score=34.98  Aligned_cols=41  Identities=10%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             CCCCCccceEEeccccc-c-cCCHHHHHHHHHhccCCCCEEEE
Q 018194          185 PFEDNHFDGAYSIEATC-H-APKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .+++++||.|+...--. . ..-+..++..+.+.|||||.|..
T Consensus        54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            36789999998754332 2 22248999999999999999973

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=85.41  E-value=1.2  Score=34.50  Aligned_cols=93  Identities=18%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CCCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccce
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDG  193 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~  193 (359)
                      .++++|+=+|||  .++..+++   ..+.+|+++|.++..++.+++   .    ..+.++.+|..+..    ..-..+|+
T Consensus        17 ~~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           17 QKSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             cCCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCE
Confidence            357899999985  44444433   346799999999876544321   1    12456667764421    11245788


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      |+..-.-   +.....+..+.+.+.|...++.
T Consensus        88 Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           88 VFAFTND---DSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             EEECSSC---HHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EEEEeCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence            8775321   1223344445555556555554

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.19  E-value=9.5  Score=28.19  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=52.7

Q ss_pred             CCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 018194          123 GDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAY  195 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~  195 (359)
                      +++|+=+|+  |..+..+++   ..+.+|+++|.++..++..++.   .    .+.++.+|..+..    .....+|+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            468998987  455555443   2467999999998876655432   1    2456777765421    1124689887


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..-.-   +.....+..+.+.+.++ .+++
T Consensus        75 ~~~~~---~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           75 AVTGK---EEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             ECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred             EeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence            76321   12233455566667775 4443

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=85.13  E-value=0.92  Score=40.60  Aligned_cols=97  Identities=14%  Similarity=0.257  Sum_probs=57.8

Q ss_pred             HHHhcCCCCCCEEEEECCC--CChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----
Q 018194          114 AVDLIDVKAGDRILDVGCG--VGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  185 (359)
                      +.+...+++|.+||=.|++  .|..+..+++.. +.+|++++ ++...+.++     .|..   .++. +-.++.     
T Consensus       134 l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~---~~~~-~~~~~~~~~~~  203 (349)
T 4a27_A          134 LFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVT---HLFD-RNADYVQEVKR  203 (349)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSS---EEEE-TTSCHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCc---EEEc-CCccHHHHHHH
Confidence            3355678899999999983  466777888754 57999998 555444443     2321   2222 211110     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+.+|+|+-.-.-       ..+....++|+|||+++++.
T Consensus       204 ~~~~g~Dvv~d~~g~-------~~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          204 ISAEGVDIVLDCLCG-------DNTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             HCTTCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred             hcCCCceEEEECCCc-------hhHHHHHHHhhcCCEEEEEC
Confidence            123579998864321       12367889999999999864

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=85.05  E-value=3.3  Score=38.26  Aligned_cols=87  Identities=17%  Similarity=0.094  Sum_probs=52.6

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      -.|++|+=+|+|. |......++..|++|+++|+++.....+.    ..|    +.+  .++.+. +  ...|+|+..-.
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~----~~G----~~v--v~LeEl-L--~~ADIVv~atg  311 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA----MDG----FEV--VTLDDA-A--STADIVVTTTG  311 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH----HTT----CEE--CCHHHH-G--GGCSEEEECCS
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH----hcC----cee--ccHHHH-H--hhCCEEEECCC
Confidence            4688999999885 54444445557899999999986543332    122    222  222221 1  35688876432


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      -.|+     +-.+....+|||++++-
T Consensus       312 t~~l-----I~~e~l~~MK~GAILIN  332 (464)
T 3n58_A          312 NKDV-----ITIDHMRKMKDMCIVGN  332 (464)
T ss_dssp             SSSS-----BCHHHHHHSCTTEEEEE
T ss_pred             Cccc-----cCHHHHhcCCCCeEEEE
Confidence            2222     11566788999998874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=84.99  E-value=3.7  Score=35.35  Aligned_cols=99  Identities=12%  Similarity=0.027  Sum_probs=64.9

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+.+|--|++.|.   .+..|++ -|++|+.+|.+++.++.+.+..     ..++.++.+|+.+..     +     .-
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~-~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVA-EGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            47788888877663   3334444 4799999999998877654433     245788899998742     0     11


Q ss_pred             CccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..|+++.+.......        ++           -.+.+.+...|+.+|.++.+
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            5689888776544321        12           13556667788888887764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=84.93  E-value=4.8  Score=34.89  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             CCCEEEEECCCC-ChHHH----HHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC----
Q 018194          122 AGDRILDVGCGV-GGPMR----AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~----~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~----  187 (359)
                      .++++|=.|++. ..++.    .|++ .|++|+.+|.++...+...+.....+   .+.++.+|+.+..     +.    
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCA-QGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            367899888764 23444    4444 47899999999766655555544443   3688999998742     10    


Q ss_pred             -CCccceEEeccccccc----------C--CH-----------HHHHHHHHhccCCCCEEEEEE
Q 018194          188 -DNHFDGAYSIEATCHA----------P--KL-----------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 -~~~fD~v~~~~~l~~~----------~--~~-----------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       -+..|+++.+..+...          +  ++           ..+++.+...++.+|.++.+.
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is  168 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS  168 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence             1468999887755421          1  11           235566677778889888753

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=84.67  E-value=1.8  Score=38.78  Aligned_cols=96  Identities=17%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             cCCCCCCEEEEECCCC-ChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--C-C-CCC-CCc
Q 018194          118 IDVKAGDRILDVGCGV-GGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL--K-M-PFE-DNH  190 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~--~-~-~~~-~~~  190 (359)
                      ..+.+|.+||-+|+|. |..+..+++.. |++|+++|.+++.++.+++.    |..   .++..+-.  + . ... ...
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~v~~~~~g~g  254 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELTRGRG  254 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCC---EEEeccchHHHHHHHHhCCCC
Confidence            6788999999999863 55677777766 89999999999988887642    321   22221111  0 0 011 236


Q ss_pred             cceEEecccccccCCHH-HHHHHHHhccCCCCEEEEEE
Q 018194          191 FDGAYSIEATCHAPKLE-DVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+|+-.-.     ... ..+....+.  +||+++++.
T Consensus       255 ~Dvvid~~G-----~~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          255 VNVAMDFVG-----SQATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             EEEEEESSC-----CHHHHHHGGGGEE--EEEEEEECC
T ss_pred             CcEEEECCC-----CchHHHHHHHhhc--CCCEEEEEe
Confidence            899876432     211 156666666  999998753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=84.23  E-value=2.6  Score=35.74  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=62.5

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGI-TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|++.|.   ++..|++ -|++|+.+ +.++...+...+.....+  .++.++.+|+.+..     +.     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQ-EGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788888876553   3333444 37899988 666666666555554433  46889999998742     00     


Q ss_pred             CCccceEEeccccc-c---cC--C---H-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATC-H---AP--K---L-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~-~---~~--~---~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -+..|+++.+.... .   +.  +   +           ..+.+.+...++++|.++.+
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  142 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF  142 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            14689888766433 1   11  1   1           23455666677778887764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=84.09  E-value=4.8  Score=34.18  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=54.8

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+.+|--|++.|.   .+..|++ -|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..     +     .-
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788888877664   3344444 47899999999999988887777665  46899999998742     0     01


Q ss_pred             CccceEEecccc
Q 018194          189 NHFDGAYSIEAT  200 (359)
Q Consensus       189 ~~fD~v~~~~~l  200 (359)
                      +..|+++.+..+
T Consensus        83 G~iDiLVNNAGi   94 (254)
T 4fn4_A           83 SRIDVLCNNAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            578998877654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.95  E-value=3.4  Score=34.99  Aligned_cols=104  Identities=14%  Similarity=0.078  Sum_probs=65.4

Q ss_pred             CCCCEEEEECCC-CChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----
Q 018194          121 KAGDRILDVGCG-VGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----  186 (359)
Q Consensus       121 ~~~~~vLDiGcG-~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----  186 (359)
                      ..+++||=.|++ +|.++..+++.   .|++|+.++.+....+..++.....+   ++.++.+|+.+..     +     
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            357799988875 34455555442   47899999988665555555544432   4789999998742     0     


Q ss_pred             CCCccceEEeccccccc-----------C--CH-----------HHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHA-----------P--KL-----------EDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~-----------~--~~-----------~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .-+..|+++.+..+...           +  ++           ..+++.+...++++|.++.+.
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  153 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS  153 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence            01468998877654331           1  11           234556667777788877653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=83.93  E-value=8.9  Score=29.29  Aligned_cols=93  Identities=10%  Similarity=-0.007  Sum_probs=56.4

Q ss_pred             CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceE
Q 018194          123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITIN-EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGA  194 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v  194 (359)
                      ..+|+=+|+  |..+..+++.   .+.+|+++|.+ ++.++......     +..+.++.+|..+..    ..-...|+|
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence            346887876  5666666542   46899999997 45444443322     124788999987632    113467888


Q ss_pred             EecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          195 YSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       195 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ++...-   ......+....+.+.|...++.
T Consensus        76 i~~~~~---d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           76 LALSDN---DADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             EECSSC---HHHHHHHHHHHHHHTSSSCEEE
T ss_pred             EEecCC---hHHHHHHHHHHHHHCCCCEEEE
Confidence            775421   1234455566667777777765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=83.84  E-value=6  Score=34.75  Aligned_cols=89  Identities=18%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             CCEEEEECCCC-C-hHHHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          123 GDRILDVGCGV-G-GPMRAIAAHSRA--NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       123 ~~~vLDiGcG~-G-~~~~~l~~~~~~--~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      .++|.=||+|. | .++..+.+ .|.  +|+++|.+++.++.+.+    .|.   +.-...|..+.  .-...|+|+..-
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~-~G~~~~V~~~dr~~~~~~~a~~----~G~---~~~~~~~~~~~--~~~~aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVD----LGI---IDEGTTSIAKV--EDFSPDFVMLSS  102 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHH----TTS---CSEEESCTTGG--GGGCCSEEEECS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHH----CCC---cchhcCCHHHH--hhccCCEEEEeC
Confidence            36899999874 2 23444444 355  99999999988777653    232   11122333320  123569888754


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      ...   ....+++++...++||..++
T Consensus       103 p~~---~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          103 PVR---TFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             CGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred             CHH---HHHHHHHHHhhccCCCcEEE
Confidence            322   35678889999999987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=83.61  E-value=7.4  Score=32.08  Aligned_cols=72  Identities=21%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC-CCCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLC-EVVCGNFLK-MPFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~v~~  196 (359)
                      .+++||=.|+ +|.++..+++.   .|.+|++++-++..++....        .++ +++.+|+.+ +.-.-+..|+|+.
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEE
Confidence            4789998875 46666665542   47899999999876554322        247 889999862 1111246899988


Q ss_pred             cccccc
Q 018194          197 IEATCH  202 (359)
Q Consensus       197 ~~~l~~  202 (359)
                      +.....
T Consensus        91 ~ag~~~   96 (236)
T 3e8x_A           91 AAGSGP   96 (236)
T ss_dssp             CCCCCT
T ss_pred             CCCCCC
Confidence            776544

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=83.60  E-value=3.4  Score=32.10  Aligned_cols=109  Identities=13%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-  184 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-  184 (359)
                      ++...........-.+| -|||+|-|.|..--.|.+ .++..|+++|---..        .....|+.-.++.+|+.+. 
T Consensus        26 QR~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~--------hp~~~P~~e~~ilGdi~~tL   96 (174)
T 3iht_A           26 QRACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS--------HPDSTPPEAQLILGDIRETL   96 (174)
T ss_dssp             HHHHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC--------CGGGCCCGGGEEESCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc--------CCCCCCchHheecccHHHHH
Confidence            44445555555554444 699999999999999988 478899999952110        0001233445667776552 


Q ss_pred             CCC----CCccceEEecccccccCCHH-----HHHHHHHhccCCCCEEEE
Q 018194          185 PFE----DNHFDGAYSIEATCHAPKLE-----DVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       185 ~~~----~~~fD~v~~~~~l~~~~~~~-----~~l~~~~~~LkpgG~l~~  225 (359)
                      +..    ....-++++....++- +..     .+=.-+..+|.|||.++-
T Consensus        97 ~~~~~r~g~~a~LaHaD~G~g~~-~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A           97 PATLERFGATASLVHADLGGHNR-EKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             HHHHHHHCSCEEEEEECCCCSCH-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHHHhcCCceEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            110    2233344443333322 211     122335678999999885

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=83.35  E-value=6  Score=33.73  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITIN------------EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-  185 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-  185 (359)
                      .++++|=.|++.| ++..+++.   .|++|+++|.+            ++.++...+.....+  .++.++.+|+.+.. 
T Consensus        12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES   88 (278)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            4678888886644 44444431   47899999987            666666555554443  46899999998742 


Q ss_pred             ----CC-----CCccceEEecccccc
Q 018194          186 ----FE-----DNHFDGAYSIEATCH  202 (359)
Q Consensus       186 ----~~-----~~~fD~v~~~~~l~~  202 (359)
                          +.     -+..|+++.+..+..
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence                10     146899988776543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=83.20  E-value=2.1  Score=37.38  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEeccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      .+++|+=||+|. |......+...|.+|+++|.++...+.+.+    .+    +.... .+..+.   -...|+|+..-.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~~~~~~~l~~~---l~~aDvVi~~~p  224 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE----MG----LVPFHTDELKEH---VKDIDICINTIP  224 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TT----CEEEEGGGHHHH---STTCSEEEECCS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----CeEEchhhHHHH---hhCCCEEEECCC
Confidence            578999999863 332223333467899999999875544322    22    23221 122111   246799988766


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .+.+.      ++....+|||+.++-
T Consensus       225 ~~~i~------~~~~~~mk~g~~lin  244 (300)
T 2rir_A          225 SMILN------QTVLSSMTPKTLILD  244 (300)
T ss_dssp             SCCBC------HHHHTTSCTTCEEEE
T ss_pred             hhhhC------HHHHHhCCCCCEEEE
Confidence            54332      234578999987763

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=83.14  E-value=2.2  Score=39.20  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=52.7

Q ss_pred             CCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          121 KAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      -.|.+|+=+|+|. |......++..|++|+++|.++.....+..    .|    ..+  .++.+.   -...|+|+....
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~----~G----~~v--~~Leea---l~~ADIVi~atg  284 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM----DG----FRL--VKLNEV---IRQVDIVITCTG  284 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CEE--CCHHHH---TTTCSEEEECSS
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH----cC----CEe--ccHHHH---HhcCCEEEECCC
Confidence            4688999999985 544444555568999999999865443321    22    121  222221   135698888432


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..++-+     .+..+.+|||++++-
T Consensus       285 t~~lI~-----~e~l~~MK~gailIN  305 (435)
T 3gvp_A          285 NKNVVT-----REHLDRMKNSCIVCN  305 (435)
T ss_dssp             CSCSBC-----HHHHHHSCTTEEEEE
T ss_pred             CcccCC-----HHHHHhcCCCcEEEE
Confidence            222211     356778999987764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.04  E-value=10  Score=31.55  Aligned_cols=75  Identities=16%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCCcc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-EDNHF  191 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-~~~~f  191 (359)
                      .++.+||=.|++ |.++..+++.   .|.+|+.++.++..++...+..     ..++.+..+|+.+..     + ..+..
T Consensus        12 ~~~k~vlVTGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           12 LTGKTSLITGAS-SGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             CCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence            356788877765 4455554442   4789999999988777655443     246889999987632     1 12468


Q ss_pred             ceEEeccccc
Q 018194          192 DGAYSIEATC  201 (359)
Q Consensus       192 D~v~~~~~l~  201 (359)
                      |+++.+....
T Consensus        86 d~li~~Ag~~   95 (249)
T 3f9i_A           86 DILVCNAGIT   95 (249)
T ss_dssp             SEEEECCC--
T ss_pred             CEEEECCCCC
Confidence            9988776543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.02  E-value=1.7  Score=37.92  Aligned_cols=87  Identities=14%  Similarity=0.072  Sum_probs=50.9

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEeccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      .+++|+=+|+|. |......+...|.+|+++|.++...+.+.    ..+    +.... .+..+.   -...|+|+..-.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~---l~~aDvVi~~~p  222 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE---LRDVDVCINTIP  222 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH---TTTCSEEEECCS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH---hcCCCEEEECCC
Confidence            678999999863 33333333346789999999987654433    222    23322 121111   245799988665


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .+.+. .     +....+|||+.++-
T Consensus       223 ~~~i~-~-----~~l~~mk~~~~lin  242 (293)
T 3d4o_A          223 ALVVT-A-----NVLAEMPSHTFVID  242 (293)
T ss_dssp             SCCBC-H-----HHHHHSCTTCEEEE
T ss_pred             hHHhC-H-----HHHHhcCCCCEEEE
Confidence            43332 2     34557899988763

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=82.81  E-value=7.5  Score=31.81  Aligned_cols=90  Identities=12%  Similarity=0.002  Sum_probs=56.3

Q ss_pred             CEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEe
Q 018194          124 DRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYS  196 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~  196 (359)
                      ++|+=+|+  |.++..+++.   .+.+|+++|.+++.++...+.   .    .+.++.+|..+..    ..-..+|+|++
T Consensus         1 M~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            1 MKVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CCEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence            35777776  5566666542   468999999999987764432   1    3578999987632    12346788877


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ...-   +.....+....+.+.|...++.
T Consensus        72 ~~~~---d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           72 LTPR---DEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             CCSC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred             ecCC---cHHHHHHHHHHHHHcCCCeEEE
Confidence            4321   1233445555666667777665

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.66  E-value=7.7  Score=33.56  Aligned_cols=78  Identities=18%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGL-DSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|+ +|.++..+++.   .|++|++++.++..++...+.....+. ..++.++.+|+.+..     +.     
T Consensus        25 ~~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGS-SNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3567776665 45555555542   478999999998877766555544331 115889999998742     10     


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      -+..|+++.+...
T Consensus       104 ~g~iD~lvnnAG~  116 (297)
T 1xhl_A          104 FGKIDILVNNAGA  116 (297)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1368998887654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.60  E-value=0.72  Score=52.34  Aligned_cols=101  Identities=14%  Similarity=0.046  Sum_probs=67.6

Q ss_pred             HhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC-C
Q 018194          116 DLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-----PF-E  187 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~-~  187 (359)
                      ....+++|.+||=.|+  |.|..+..+++..|++|++++.+++..+.+++.....+..   .++...-.+.     .. .
T Consensus      1661 ~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~~~~~~~~~i~~~t~ 1737 (2512)
T 2vz8_A         1661 VRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET---CFANSRDTSFEQHVLRHTA 1737 (2512)
T ss_dssp             TTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCST---TEEESSSSHHHHHHHHTTT
T ss_pred             HHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCce---EEecCCCHHHHHHHHHhcC
Confidence            3456789999999874  4577888889888999999999998887776643222211   1222111110     01 1


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...+|+|+-...       ...+....++|+|||+++.+
T Consensus      1738 g~GvDvVld~~g-------~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1738 GKGVDLVLNSLA-------EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             SCCEEEEEECCC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCceEEEECCC-------chHHHHHHHhcCCCcEEEEe
Confidence            245899886331       45688999999999999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=82.17  E-value=27  Score=32.58  Aligned_cols=84  Identities=15%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      .|++|+=+|+|  ..+..+++   ..|++|+++|+++.....+...    +    +.  ..+..+.   ....|+|+...
T Consensus       264 ~GKtVvVtGaG--gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~----g----~d--v~~lee~---~~~aDvVi~at  328 (488)
T 3ond_A          264 AGKVAVVAGYG--DVGKGCAAALKQAGARVIVTEIDPICALQATME----G----LQ--VLTLEDV---VSEADIFVTTT  328 (488)
T ss_dssp             TTCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CE--ECCGGGT---TTTCSEEEECS
T ss_pred             cCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----C----Cc--cCCHHHH---HHhcCEEEeCC
Confidence            68899999988  44444443   3588999999998766554432    2    12  2233222   24579887644


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .-.++-+     .+..+.+|+|+.++-
T Consensus       329 G~~~vl~-----~e~l~~mk~gaiVvN  350 (488)
T 3ond_A          329 GNKDIIM-----LDHMKKMKNNAIVCN  350 (488)
T ss_dssp             SCSCSBC-----HHHHTTSCTTEEEEE
T ss_pred             CChhhhh-----HHHHHhcCCCeEEEE
Confidence            3222211     335778999987764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=80.94  E-value=7.9  Score=33.10  Aligned_cols=101  Identities=23%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 018194          123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQ-VNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----D  188 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~  188 (359)
                      ++++|=.|++ |.++..+++.   .|++|++++.++.. .+...+.....+  .++.++.+|+.+..     +.     -
T Consensus        29 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           29 GKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5677766655 5555555542   47899999987543 343333333333  46888999987632     00     1


Q ss_pred             CccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..|+++.+.......        ++           ..+++.+.+.|+.+|.++.+
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  162 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  162 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            3679988776544321        11           12446666777778888875

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=80.23  E-value=7.5  Score=33.05  Aligned_cols=102  Identities=12%  Similarity=0.028  Sum_probs=62.3

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEe-CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGIT-INEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D-~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----  187 (359)
                      .++++|=.|++.|.   ++..|++. |++|+.++ .++...+...+.....+  .++.++.+|+.+..     +.     
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788888876553   33344443 78888874 45555555555555443  46889999998742     00     


Q ss_pred             CCccceEEecccccccC--------CHH-----------HHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--------KLE-----------DVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--------~~~-----------~~l~~~~~~LkpgG~l~~~  226 (359)
                      -+..|+++.+..+....        ++.           .+++.+...++++|.++.+
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  160 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM  160 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence            14689988876554321        111           3456667777888888765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.01  E-value=8.6  Score=32.54  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=59.5

Q ss_pred             CCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 018194          123 GDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FE-----DN  189 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~-----~~  189 (359)
                      ++++|=.|++ |.++..+++.   .|.+|+.++.++..++...+.     +..++.++.+|+.+..     +.     -+
T Consensus         6 ~k~vlITGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            6 GKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVAA-----LEAEAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----hcCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5678877765 4455444431   478999999998766554332     2246888999998742     10     13


Q ss_pred             ccceEEecccccccC-----C---H-----------HHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAP-----K---L-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~-----~---~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..|+++.+.......     +   +           ..+.+.+...++.+|.++.+
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  135 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT  135 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            579998876554321     1   1           12344555556557887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-19
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	4e-18
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	6e-18
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	6e-17
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	5e-16
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-16
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-14
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	9e-13
d1kpia_	291	c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [	2e-12
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	5e-12
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	7e-12
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-11
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	1e-11
d2fk8a1	280	c.66.1.18 (A:22-301) Methoxy mycolic acid synthase	2e-11
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-11
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	8e-11
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	8e-11
d1kpga_	285	c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [	9e-11
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	7e-10
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	8e-10
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	1e-09
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	2e-09
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-09
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	5e-09
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	6e-09
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	3e-08
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	3e-08
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	4e-08
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	9e-08
d1im8a_	225	c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)	1e-07
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	3e-07
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-07
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	5e-07
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	1e-06
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	5e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	5e-06
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	5e-06
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	6e-06
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	7e-06
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	7e-06
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	2e-05
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	3e-05
d2ex4a1	222	c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (	4e-05
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	1e-04
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	2e-04
d1dusa_	194	c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo	7e-04
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	0.001
d2f8la1	328	c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {	0.003

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 3e-19
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 11/200 (5%)

Query: 55  WKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMA 114
           WK   +P +         +      V +       +  ++ P  P      +  L  +M 
Sbjct: 85  WKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQM- 143

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGL--- 170
           +D I +   D  +D+G GVG  +  +AA +   +  G+   +     A   +++      
Sbjct: 144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK 203

Query: 171 -----DSLCEVVCGNFLKMPFEDNHFDGA-YSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
                 +   +  G+FL   + +   + +   +      P+++    E F  +K G   V
Sbjct: 204 WYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 263

Query: 225 SYEWVTTDKYEAENKEHVDI 244
           S +      +   ++   DI
Sbjct: 264 SSKPFAPLNFRINSRNLSDI 283

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (203), Expect = 4e-18
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 16/187 (8%)

Query: 71  DFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVG 130
           DF+   Y                FS  + G+   +      ++      +K GD  +D+G
Sbjct: 169 DFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPN---FLSDV-YQQCQLKKGDTFMDLG 224

Query: 131 CGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDS---------LCEVVCGN 180
            GVG  +   A     A   G  I +   +   L  ++              +   +  +
Sbjct: 225 SGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284

Query: 181 FLKMPFEDNHFDGA--YSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN 238
           F+                +        L     ++ +  K G   +S + + +  Y+   
Sbjct: 285 FVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINF 344

Query: 239 KEHVDII 245
               +I 
Sbjct: 345 YNVENIF 351

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 80.6 bits (197), Expect = 6e-18
 Identities = 63/297 (21%), Positives = 110/297 (37%), Gaps = 29/297 (9%)

Query: 67  EKVPDFVDTFYNLVT--DIYEWGW-GQSFHF---SPSIPGKSHRDATRLHEEMAVDLID- 119
           + V D  + +Y+       Y   W G+  H       +     R+A+   +E     +  
Sbjct: 2   KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAM 61

Query: 120 ---VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
              ++   + LD+G G GG  R +      ++  + I   Q  R   +N +AGL     V
Sbjct: 62  TGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITV 121

Query: 177 VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEA 236
             G+FL++P EDN +D  +S +A  H+P    V+ E  RVLKP  +    + +  D  + 
Sbjct: 122 KYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDK 181

Query: 237 ENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGR 296
            +      IQ I     L  + S      +AK  G   ++            ++++K   
Sbjct: 182 SS------IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV-HHYSKVKAEL 234

Query: 297 FAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKP 353
                            IA   +      + +  ++   GG  G  T   M+  RK 
Sbjct: 235 IKRS-----------SEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGGML-FRKS 279

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 76.9 bits (188), Expect = 6e-17
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 10/202 (4%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD 171
            + +   + +A  R+LD+G G G    A + +     +G+   +  V  A    ++ G++
Sbjct: 6   GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE 64

Query: 172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTT 231
           ++          +PF D+ FD      A  H   +     EV RVLK    ++  +    
Sbjct: 65  NVRFQQGTAE-SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH--- 120

Query: 232 DKYEAENKEHVDIIQGIERGDALPGLRSYA--EITEIAKRVGFEVVKEKDLAKPPAQPWW 289
             Y  E+    + +  + R      +R  +  E   +           +    P     W
Sbjct: 121 --YAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDSW 178

Query: 290 TRLKMGRFAYWRNHILVTILAA 311
            + + G  A     I+  +  A
Sbjct: 179 IK-RGGTPADREKQIITHLNHA 199

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (182), Expect = 5e-16
 Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 7/173 (4%)

Query: 103 HRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRAR 162
           H   T         ++ +K G RILD+G G G  +   A        GI ++     +A+
Sbjct: 14  HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK 73

Query: 163 LHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
              ++ G+      +  N       +   D A  + AT  A         + + LKPG +
Sbjct: 74  RRAEELGVSERVHFIH-NDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI 132

Query: 223 YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
            +  E         E       I       +     +   +      +G++VV
Sbjct: 133 MLIGEPYWRQLPATEE------IAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 74.3 bits (181), Expect = 5e-16
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 20/241 (8%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLC 174
           + +  +K  + +LDV  G G    A A      VV   + E  +  AR   +  G   + 
Sbjct: 8   MQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVE 66

Query: 175 EVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKY 234
            V          ++        I A  H P      +E +RVLK G   +  +       
Sbjct: 67  YVQGDAEQMPFTDERFHIVTCRI-AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP--- 122

Query: 235 EAENKEHVDIIQGIERGDALPGLRSY--AEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
             EN         +E+       R++  ++  ++ +  GFE+ +     K      W   
Sbjct: 123 --ENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDR 180

Query: 293 KMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRK 352
            M      +  +   I +             +   K    +  G          ++  RK
Sbjct: 181 -MNVTTEKKQELSDFIKSKPT----------EYYQKFKIVVEDGRVYSFRGESILMKARK 229

Query: 353 P 353
           P
Sbjct: 230 P 230

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 14/171 (8%)

Query: 92  FHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGI 151
           F  +PS+PG +  +       + + L +    D  +DVGCG GG    +A   R  V  I
Sbjct: 7   FIKNPSVPGPTAMEV----RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAI 61

Query: 152 TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYA 211
             N   ++   ++ ++ GL     ++ G+  +   +    D A    +      L+++  
Sbjct: 62  DRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGE---LQEILR 118

Query: 212 EVFRVLKPGSLYVSYEWVTTDKYEA-----ENKEHVDIIQ-GIERGDALPG 256
            +   LKPG   +    +   K+EA     +    V+I +  I RG AL  
Sbjct: 119 IIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNITELNIARGRALDR 169

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 9e-13
 Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 19/178 (10%)

Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRA-------NVVGITINEYQVNRARLHNKKAG 169
           + D K+  +IL +G G G     I +  +A       N   +  +  Q+ + +    K  
Sbjct: 35  IGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS 94

Query: 170 LDSLCEVVCG--------NFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS 221
                +            + +    E   +D  + I+   +   +         +L   +
Sbjct: 95  NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA 154

Query: 222 LYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279
             +    +        +K          + D      +  ++T++   +G +      
Sbjct: 155 KML---IIVVSGSSGWDKLWKKYGSRFPQDDLCQ-YITSDDLTQMLDNLGLKYECYDL 208

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.9 bits (157), Expect = 2e-12
 Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 77  YNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGV 133
           Y+   + ++     S  +S +    P  +  +A     ++A+D ++++ G  +LD+GCG 
Sbjct: 13  YDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGW 72

Query: 134 GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193
           G  MR   A    NV+G+T++E Q                              D   D 
Sbjct: 73  GSTMRHAVAEYDVNVIGLTLSENQYAH---DKAMFDEVDSPRRKEVRIQGWEEFDEPVDR 129

Query: 194 AYSIEATCHAPK---------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDI 244
             S+ A  H             +  + + + +       + +     DK EA+       
Sbjct: 130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSP 189

Query: 245 IQGIERGD 252
           +  +    
Sbjct: 190 MSLLRFIK 197

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 62.4 bits (151), Expect = 5e-12
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 37/194 (19%)

Query: 114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDS 172
            + ++ +K   +IL +G   G     +A  +    V  I      +      +  A  ++
Sbjct: 66  GLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--DACAEREN 123

Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232
           +  ++        + +         E      + E +       LK G   +      + 
Sbjct: 124 IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183

Query: 233 KYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
               + KE                   + E  EI +  GF++V E D+            
Sbjct: 184 DVTKDPKE------------------IFKEQKEILEAGGFKIVDEVDIEP---------- 215

Query: 293 KMGRFAYWRNHILV 306
                 + ++H++ 
Sbjct: 216 ------FEKDHVMF 223

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.8 bits (152), Expect = 7e-12
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 17/160 (10%)

Query: 103 HRDATRLHEEMAVDLI---DVKAGDRILDVGCGVGGPMRAI--AAHSRANVVGITINEYQ 157
            R    ++ + +  +    DVK GDRI+D G G G     +  A  S   V      E  
Sbjct: 81  KRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEF 140

Query: 158 VNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL 217
              A  +  K GL     +   +          FD           P   +   + +  L
Sbjct: 141 AKLAESNLTKWGLIERVTIKVRDI------SEGFDEKDVDALFLDVPDPWNYIDKCWEAL 194

Query: 218 KPGSLYVSYEWVTTDKYEAENK------EHVDIIQGIERG 251
           K G  + +    T    E   K        +++ + + R 
Sbjct: 195 KGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRP 234

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 28/189 (14%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
            K GD +LD+GCG GG +            G+ I E  +N AR+  +             
Sbjct: 22  TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 81

Query: 180 NFLKMPFEDNHFDGAYSIEATCH-----APKLEDVYAEVFRVLKPGSLY----VSYEWVT 230
           +      +        S + + H     +  L+     + R L+PG  +     S + + 
Sbjct: 82  DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 141

Query: 231 TDKYEAENKEHVDIIQGIERGDALPG-------------------LRSYAEITEIAKRVG 271
               +         I+  +  D                          +  + +  KR+G
Sbjct: 142 ERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLG 201

Query: 272 FEVVKEKDL 280
             +V+ K  
Sbjct: 202 LSLVERKGF 210

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 5/187 (2%)

Query: 107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK 166
             +  +      D      +LDVG G GG   AIA  +      +      V+ AR + K
Sbjct: 65  QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLK 124

Query: 167 KAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226
             GL    +VV G+F +             +           +       L+PG   + +
Sbjct: 125 DEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIH 184

Query: 227 EWV-TTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPA 285
           E     +    E    +D+   +  G A   LR+  +   +A   G  V + + L   P 
Sbjct: 185 ERDDLHENSFNEQFTELDLRMLVFLGGA---LRTREKWDGLAASAGLVVEEVRQL-PSPT 240

Query: 286 QPWWTRL 292
            P+   L
Sbjct: 241 IPYDLSL 247

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 4/166 (2%)

Query: 77  YNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGV 133
           Y++  D +      +  +S +    P  +  +A     ++ +D +D+K G  +LD+GCG 
Sbjct: 4   YDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW 63

Query: 134 GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDG 193
           G  MR        NV+G+T+++ Q  R          +   +V+   +       +    
Sbjct: 64  GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVS 123

Query: 194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
             + E   H    +D +   F ++           V+   YE   +
Sbjct: 124 IEAFEHFGHENY-DDFFKRCFNIMPADGRMTVQSSVSYHPYEMAAR 168

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 60.1 bits (145), Expect = 5e-11
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 14/144 (9%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN--VVGITINEYQVNRARLHNKKAGLDS 172
           +    ++ G  IL+VG G G     I         +  +  +E  + +A  +  +     
Sbjct: 78  IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137

Query: 173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTD 232
                  +      +  +             P   +   ++  ++KPGS+   Y      
Sbjct: 138 NVRTSRSDIADFISDQMYDAV------IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQ 191

Query: 233 KYEAENK------EHVDIIQGIER 250
             +           H++ ++ ++R
Sbjct: 192 SEKTVLSLSASGMHHLETVELMKR 215

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (144), Expect = 8e-11
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 101 KSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNR 160
              R  T  ++   + L+      R+LDV CG G     +      +V  +  ++  +  
Sbjct: 35  GDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKY 93

Query: 161 ARLHNKKAGLD---SLCEVVCGNFL----KMPFEDNHFDGAYSIEATCHAP-------KL 206
           A         +       +   N+L     +P  D          +  H P       + 
Sbjct: 94  ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 153

Query: 207 EDVYAEVFRVLKPGSL----YVSYEWVTTDKYEAENKE 240
                 +  +++PG L    + +Y+++ +       K 
Sbjct: 154 RLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKN 191

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 8e-11
 Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 22/183 (12%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
             G R+L+VG G+      +          I  N+    R R    +     +       
Sbjct: 52  SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE 111

Query: 181 FLKMPFEDNHFDGAY-----SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYE 235
            +     D HFDG         E T H  +   +    FR+LKPG +     +     + 
Sbjct: 112 DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT---YCNLTSWG 168

Query: 236 AENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK----DLAKPPAQPWWTR 291
              K     I  +     +P L             GF     +     L  P    ++  
Sbjct: 169 ELMKSKYSDITIMFEETQVPALLEA----------GFRRENIRTEVMALVPPADCRYYAF 218

Query: 292 LKM 294
            +M
Sbjct: 219 PQM 221

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.5 bits (143), Expect = 9e-11
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 73  VDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDV 129
           V   Y+L  D +      +  +S +       + ++A     ++A+  + ++ G  +LDV
Sbjct: 10  VQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDV 69

Query: 130 GCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189
           GCG G  M         NVVG+T+++ Q N      +                     D 
Sbjct: 70  GCGWGATMMRAVEKYDVNVVGLTLSKNQANHV---QQLVANSENLRSKRVLLAGWEQFDE 126

Query: 190 HFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK 239
             D   SI A  H    + +  ++   R+L    + + +        E   +
Sbjct: 127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHER 178

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 56.8 bits (136), Expect = 7e-10
 Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 12/173 (6%)

Query: 117 LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
           +  +     I+D GCG G     +            I+  +   A        L    E 
Sbjct: 22  VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF 81

Query: 177 VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE--------- 227
           + G+  ++   D +   A       H    E +  ++   +K G   + +E         
Sbjct: 82  LEGDATEIELNDKYDI-AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMAS 140

Query: 228 WVTTDKYEAENKEHVDIIQGIERGDALPG--LRSYAEITEIAKRVGFEVVKEK 278
           ++   + ++E  +   + +  E      G       +I      +G + ++ +
Sbjct: 141 YLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 193

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 8e-10
 Identities = 26/206 (12%), Positives = 46/206 (22%), Gaps = 49/206 (23%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV---- 176
             GD ++D+G G        A  S  ++      +          KK             
Sbjct: 50  LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF 109

Query: 177 -----------------------------VCGNFLKMPFEDNHFDGAYSIEATCHAPKLE 207
                                        V       P      D   ++ A   A    
Sbjct: 110 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL 169

Query: 208 DVYAEVF----RVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI 263
           D Y         +LKPG   V+   +    Y    +E   +                 E+
Sbjct: 170 DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKG------------EV 217

Query: 264 TEIAKRVGFEVVKEKDLAKPPAQPWW 289
            +     GF++ +     +  +    
Sbjct: 218 EQAVLDAGFDIEQLLHSPQSYSVTNA 243

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN--VVGITINEYQVNRARLHNKKAGL 170
             V   D+  G R+L+ G G G    ++         V+           AR +      
Sbjct: 87  QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG 146

Query: 171 DSLCEV--VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226
                   V  +       D   D A             +V   V R+L  G + + Y
Sbjct: 147 QPPDNWRLVVSDLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMVY 199

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 23/163 (14%)

Query: 109 LHEEMAVD-------------LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE 155
           +HEEM  D               D+     +LDVGCG G      AA   A  V      
Sbjct: 12  IHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMF-AAKHGAKHVIGVDMS 70

Query: 156 YQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC---HAPKLEDVYAE 212
             +  A+   +  G      ++ G    +       D   S        +   ++ V   
Sbjct: 71  SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYA 130

Query: 213 VFRVLKPGSLYVSYEW------VTTDKYEAENKEHVDIIQGIE 249
               L  G L    +       +   +Y+ E   +   + G +
Sbjct: 131 RDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFD 173

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 3/179 (1%)

Query: 107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK 166
             L  E   D  D  A   +LDVG G GG + AIA  +      +        RAR    
Sbjct: 66  EDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFA 125

Query: 167 KAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY 226
            AGL     V  G+F K             +           +     R L+PG   +  
Sbjct: 126 DAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVL 185

Query: 227 EWVTTDKYEAENKEHVDIIQGIERGDALPG-LRSYAEITEIAKRVGFEVVKEKDLAKPP 284
           +    +   A+       +  +     + G +R+  E+ ++A   G  +  E+      
Sbjct: 186 DRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTT 242

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 54.2 bits (129), Expect = 5e-09
 Identities = 37/270 (13%), Positives = 74/270 (27%), Gaps = 28/270 (10%)

Query: 26  PAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYE 85
           P+++   R + +SG   + +       E WK          E        +Y    + + 
Sbjct: 6   PSKEASSRNLPISGRDTNGKTYRST-DEMWKAELTGDLYDPE------KGWYGKALEYWR 58

Query: 86  WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGD-RILDVGCGVGGPMRAIAAHS 144
                    S  + G  H     +             G  R LD G G+G   + +    
Sbjct: 59  ---TVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL 115

Query: 145 RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP 204
            A    +   ++ +  A+          + + +  +        N +D         +  
Sbjct: 116 YATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMETATLPPNTYDLIVIQWTAIYLT 172

Query: 205 KLE--DVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAE 262
             +    +    + L P       E  +T      +KE   +             RS   
Sbjct: 173 DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLT------------RSDIH 220

Query: 263 ITEIAKRVGFEVVKEKDLAKPPAQPWWTRL 292
              +    G  VVKE    + P   +  ++
Sbjct: 221 YKRLFNESGVRVVKEAFQEEWPTDLFPLKM 250

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 9/124 (7%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN--VVGITINEYQVNRARLHNKKAG 169
            M + ++D+  GD +L+ G G GG    ++    +   V+   + +   + A+ + K   
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEA-------TCHAPKLEDVYAEVFRVLKPGSL 222
                  V      + F      GA                          +  LK G +
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 207

Query: 223 YVSY 226
              Y
Sbjct: 208 CAVY 211

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 40/196 (20%)

Query: 113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLD 171
           +    + ++  +R+L +G   G  +  +A       +  +  +     +     +     
Sbjct: 47  LKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRER 103

Query: 172 SLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSYEWVT 230
           +    +  +  K        +    I         +E + A     LK     V      
Sbjct: 104 NNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR 163

Query: 231 TDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWT 290
           +    AE +E                    + + E+     F++VK   L          
Sbjct: 164 SIDSTAEPEEVFK-----------------SVLKEMEG--DFKIVKHGSLMP-------- 196

Query: 291 RLKMGRFAYWRNHILV 306
                   Y R+HI +
Sbjct: 197 --------YHRDHIFI 204

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.7 bits (123), Expect = 3e-08
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 5/138 (3%)

Query: 108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK 167
              +E        K  + ++D+  G+G     IA + +A V+ I  + Y       +   
Sbjct: 93  ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL 152

Query: 168 AGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE 227
             ++        +  +    +N  D         +  +  +   +   + K G++   + 
Sbjct: 153 NKVEDRMSAYNMDN-RDFPGENIADRILM----GYVVRTHEFIPKALSIAKDGAIIHYHN 207

Query: 228 WVTTDKYEAENKEHVDII 245
            V       E  E    I
Sbjct: 208 TVPEKLMPREPFETFKRI 225

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 17/128 (13%)

Query: 109 LHEEMAVD-------------LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE 155
           +HEEM  D                +     +LDVGCG G      A      V+G+  +E
Sbjct: 9   IHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE 68

Query: 156 YQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK---LEDVYAE 212
             + +A    +   L+    ++ G   ++       D   S            L+ V   
Sbjct: 69  -ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYA 127

Query: 213 VFRVLKPG 220
             + L  G
Sbjct: 128 KNKYLAKG 135

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 49.6 bits (117), Expect = 9e-08
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLH 164
             TR H ++      V  G R LD+GCG G     +AA+               N  R+ 
Sbjct: 14  GLTRTHSDVLAAAKVVAPG-RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIK 72

Query: 165 NKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCH--APKLEDVYAEVFRVLKPGSL 222
             +   +   ++V  N L        +D   S        A  +  + A + R  KPG  
Sbjct: 73  AAEGLDNLQTDLVDLNTLTFDG---EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGY 129

Query: 223 YVSYEWVTTDKYEAE 237
            +    + T  +   
Sbjct: 130 NLIVAAMDTPDFPCT 144

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 31/220 (14%)

Query: 75  TFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLID--VKAGDRILDVGCG 132
            F   V +++            S+PG                L +  V A   + D+GC 
Sbjct: 2   IFDENVAEVFP------DMIQRSVPG------YSNIITAIGMLAERFVTADSNVYDLGCS 49

Query: 133 VGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN 189
            G      R         ++GI  ++  V R R H      +   E++C +   +  ++ 
Sbjct: 50  RGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNA 109

Query: 190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK---------- 239
                              +  +++  L P  + V  E    +  +  +           
Sbjct: 110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKR 169

Query: 240 ----EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV 275
                 +++ Q     + +    S        K VGF  V
Sbjct: 170 ANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQV 209

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 26/128 (20%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 109 LHEEMAVD-------------LIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINE 155
           +HEEM  D                +     +LDVG G G      A      V+GI  + 
Sbjct: 7   IHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS 66

Query: 156 YQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK---LEDVYAE 212
                A    K   LD +  ++ G   ++       D   S            L  V   
Sbjct: 67  ISD-YAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHA 125

Query: 213 VFRVLKPG 220
             + L P 
Sbjct: 126 RDKWLAPD 133

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 123 GDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNF 181
              +LD+GCG G    A A         G+ +++  +  A     +            + 
Sbjct: 85  ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ------VTFCVASS 138

Query: 182 LKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG 220
            ++PF D   D    I A C A        E+ RV+KPG
Sbjct: 139 HRLPFSDTSMDAIIRIYAPCKA-------EELARVVKPG 170

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 47.8 bits (112), Expect = 5e-07
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 15/124 (12%)

Query: 115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL- 173
              ++V  G R+L   CG    M  ++     +VVG  ++E  V R      +    +  
Sbjct: 13  WSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQ 71

Query: 174 -----------CEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPG 220
                             F     +  H    Y   A    P    E     +  ++   
Sbjct: 72  GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131

Query: 221 SLYV 224
              +
Sbjct: 132 CSGL 135

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 28/252 (11%), Positives = 51/252 (20%), Gaps = 65/252 (25%)

Query: 71  DFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVG 130
            ++   Y           G                   L +  A       +G  ++D+G
Sbjct: 17  AYLRNNYAPPRGDLCNPNGVGPWKLR-----------CLAQTFATGE---VSGRTLIDIG 62

Query: 131 CGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL----DSLCEVVC-------- 178
            G        A     ++      E          ++           +  C        
Sbjct: 63  SGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 122

Query: 179 -----------------------GNFLKMPFEDNHFDGAYSIEATCHAP----KLEDVYA 211
                                               D   S              +    
Sbjct: 123 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALD 182

Query: 212 EVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG 271
            +  +L+PG   +    +    Y A          G  R   +P   S  E+ E   R G
Sbjct: 183 HITTLLRPGGHLLLIGALEESWYLA----------GEARLTVVP--VSEEEVREALVRSG 230

Query: 272 FEVVKEKDLAKP 283
           ++V   +    P
Sbjct: 231 YKVRDLRTYIMP 242

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 27/203 (13%), Positives = 48/203 (23%), Gaps = 31/203 (15%)

Query: 121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN 180
              D  LD+ CG G     +    +         E           +     L      N
Sbjct: 36  LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN 95

Query: 181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV---------------- 224
                  D       S      +  L+  +  V   LK G +++                
Sbjct: 96  LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNN 155

Query: 225 ---------SYEW---VTTDKYEAENKEHVDIIQGIERGDALPGLRSY--AEITEIAKRV 270
                     Y W      D         V   +  +R D     R+Y   +I +  K  
Sbjct: 156 DFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHG 215

Query: 271 GFEVVK-EKDLAKPPAQPWWTRL 292
              ++      +    + +  R+
Sbjct: 216 QLNILDKVDCYSNKKVEKFTERI 238

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 25/195 (12%), Positives = 52/195 (26%), Gaps = 14/195 (7%)

Query: 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLH 164
           D   +H  M            +L++G   G     +  H   ++  +  +E  ++ A+  
Sbjct: 3   DFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGR 61

Query: 165 NKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVF-RVLKP-GSL 222
            K             +  +       +D         H      +   +    L   G L
Sbjct: 62  LKD------GITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL 115

Query: 223 YVS-YEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSY---AEITEIAKRVGFEVVK-E 277
           ++         +  A     +     +   +   G R       +   A R G +V    
Sbjct: 116 FLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175

Query: 278 KDLAKPPAQPWWTRL 292
               K  A   W ++
Sbjct: 176 GIFFKALANFQWDQI 190

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 44.9 bits (105), Expect = 5e-06
 Identities = 42/257 (16%), Positives = 71/257 (27%), Gaps = 59/257 (22%)

Query: 45  EEVED-----NYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIP 99
           EEV D      ++   K             P     F  L       G        P + 
Sbjct: 52  EEVGDEDWLEAWRRDLK-------------PALAPPFVVLAPWHTWEGAEIPLVIEPGMA 98

Query: 100 GKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVN 159
             +    T      A+     + GD++LD+G G G    A         +G+ I+   + 
Sbjct: 99  FGTGHHETTRLALKALARHL-RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLP 156

Query: 160 RARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKP 219
           +A  + K+ G+      + G+                + A  +A     +       L P
Sbjct: 157 QAEANAKRNGVR--PRFLEGSLEAALPFGPFDL----LVANLYAELHAALAPRYREALVP 210

Query: 220 GSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKD 279
           G                       ++ GI +  A         + E     GF  ++E  
Sbjct: 211 GGRA--------------------LLTGILKDRA-------PLVREAMAGAGFRPLEEAA 243

Query: 280 LAKPPAQPWWTRLKMGR 296
             +      W  L  GR
Sbjct: 244 EGE------WVLLAYGR 254

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 26/184 (14%)

Query: 99  PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEY 156
           P +S   A  ++    +    +K G  +L +G   G     ++        + GI  +  
Sbjct: 53  PNRSKLGAAIMN---GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR 109

Query: 157 QVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRV 216
            +       ++               +        D  +         + + +       
Sbjct: 110 VLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVY 167

Query: 217 LKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK 276
           LK G   +      +     E ++                   + E+        FEV++
Sbjct: 168 LKRGGYGMIAVKSRSIDVTKEPEQ------------------VFREVERELSE-YFEVIE 208

Query: 277 EKDL 280
             +L
Sbjct: 209 RLNL 212

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 7e-06
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 119 DVKAGDRILDVGCGVGGPMRAI--AAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEV 176
            +  G + LDVG G G               V+GI   +  V+ +  + +K     L   
Sbjct: 73  QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 132

Query: 177 VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
                +         +  Y       A     V   +   LKPG   +
Sbjct: 133 RVQLVVGDGRMGYAEEAPYDAIHVGAAA--PVVPQALIDQLKPGGRLI 178

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 10/149 (6%)

Query: 76  FYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGG 135
            Y L+ + Y+  + +          +  +      EE+       +   R+LD+ CG G 
Sbjct: 4   LYTLLAEYYDTIYRRRI--------ERVKAEIDFVEEI-FKEDAKREVRRVLDLACGTGI 54

Query: 136 PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY 195
           P   +A      VVG+ ++E  +  AR   K+  L           +    E +     +
Sbjct: 55  PTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF 113

Query: 196 SIEATCHAPKLEDVYAEVFRVLKPGSLYV 224
           S         L  ++++V   LKPG +++
Sbjct: 114 STIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 3/152 (1%)

Query: 112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAG 169
           +  V L +   G R+L+  C  G  +RA      +    VG+ I+   ++          
Sbjct: 9   DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILA 68

Query: 170 LDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVSYEW 228
              L E      L +        G  S         ++D+Y + F   K    LY ++  
Sbjct: 69  DFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLE 128

Query: 229 VTTDKYEAENKEHVDIIQGIERGDALPGLRSY 260
                 +        +       +    LR +
Sbjct: 129 KAVRLLKPGGVLVFVVPATWLVLEDFALLREF 160

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG 179
           +K   ++LD+ CGVGG    +  +    V      +           +   +S  E + G
Sbjct: 35  MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR---ESNVEFIVG 91

Query: 180 NFLKMPFEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAE 237
           +  K+ FED  FD    I++  H     L  V+ EV RVLKP   ++ Y      +    
Sbjct: 92  DARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT-DLRELLPR 150

Query: 238 NKEHVDIIQGIERGDALPGLRSYAEITEIA 267
            KE + + Q       +P       + E  
Sbjct: 151 LKESLVVGQKYWISKVIPDQEERTVVIEFK 180

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 14/182 (7%)

Query: 104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARL 163
             + +  +    +  +       LD G G+G   + +       V  + I E  + +A+ 
Sbjct: 42  NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKT 101

Query: 164 HNKKAGLDSLCEVVCGNFLKMPFED-NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSL 222
           +  + G        CG     P  D         +        L +        L+P  +
Sbjct: 102 YLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 161

Query: 223 YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAK 282
            V  + +  +    ++ +                 R    +  I    G  ++ E+    
Sbjct: 162 IVIKDNMAQEGVILDDVDSSVC-------------RDLDVVRRIICSAGLSLLAEERQEN 208

Query: 283 PP 284
            P
Sbjct: 209 LP 210

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 108 RLHEEMAVDLID--VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN 165
           +L+  +    ++  +K   R+LD+G G G     +       V+     E          
Sbjct: 26  KLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV 85

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI-EATCHAPKLEDVYAEVFRVLKPGSLYV 224
                     VV      +PF    F+   ++ +   +    +  ++E+ RVL P  L +
Sbjct: 86  --------KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 137

Query: 225 -------SYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA-EITEIAKRVGFEVVK 276
                  ++     +K   +        Q    G  L    SYA +  ++    GFE V 
Sbjct: 138 ATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVD 197

Query: 277 EK 278
            +
Sbjct: 198 IR 199

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 20/139 (14%)

Query: 105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLH 164
              +L ++     +  K+G R+    CG    M+  A     +VVG+ I+E  +      
Sbjct: 28  QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTE 86

Query: 165 NKKAGLDSLCE-----------------VVCGNFLKMPFEDNHFDGAYSIEATCHAPK-- 205
              +  +                       C  F         FD  +   A        
Sbjct: 87  QNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD 146

Query: 206 LEDVYAEVFRVLKPGSLYV 224
            +     +F +L     Y+
Sbjct: 147 RKCYADTMFSLLGKKFQYL 165

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 19/191 (9%)

Query: 89  GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANV 148
           G+   F  +  G           ++ V+ + V   D ILD+GCG G    A+A   ++  
Sbjct: 20  GKKLKFK-TDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTT 78

Query: 149 VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLED 208
           +                     +    VV  +  +   +  +     +         L  
Sbjct: 79  MADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHR 138

Query: 209 VYAEVFRVLKP-GSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA 267
           +  E   +LK  G ++V  +     K  A+  + V                 +  +  + 
Sbjct: 139 IIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-----------------FGNVETVT 181

Query: 268 KRVGFEVVKEK 278
            + G+ V+K K
Sbjct: 182 IKGGYRVLKSK 192

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 19/188 (10%)

Query: 107 TRLHEEMAVDLIDVKAGDR-ILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN 165
                +  +++     G   ++DVG G G  +  I       + GI  +  QV       
Sbjct: 65  CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELI-ISKYPLIKGINFDLPQVIENA--- 120

Query: 166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHA---PKLEDVYAEVFRVLKPGSL 222
                 S  E V G+     F       A  ++A CH     K  +  +   + L P   
Sbjct: 121 ---PPLSGIEHVGGDM----FASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 173

Query: 223 YVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGL-RSYAEITEIAKRVGFEVVKEKDLA 281
            +  E++  ++     +  +           + G  R+  +  +++K  GF   +   +A
Sbjct: 174 VIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ---VA 230

Query: 282 KPPAQPWW 289
                   
Sbjct: 231 CRAFNSLG 238

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 27/164 (16%)

Query: 23  VLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVDTF------ 76
           VL       +  + +S      E  E+ +++     +      + K+    ++       
Sbjct: 11  VLDNTAIILQNELEISYLEAVYETGENLFQKEVLQKEELSSEKQLKLQASYESIELENFS 70

Query: 77  YNLVTDIYEW--------GWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILD 128
              +    +         G   +   +P            +   +   +I  K    ILD
Sbjct: 71  NEEIRKGLQLALLKGMKHGIQVNHQMTP-------DSIGFIVAYLLEKVIQKKKNVSILD 123

Query: 129 VGCGVGGPMRAIAAHSRA------NVVGITINEYQVNRARLHNK 166
             CG    +  +            +  G+ +++  ++ A +   
Sbjct: 124 PACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	100.0
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	100.0
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	100.0
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.97
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.95
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.95
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.92
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.91
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.9
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.89
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.89
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.88
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.86
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.86
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.86
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.85
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.84
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.83
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.83
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.82
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.81
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.81
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.8
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.8
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.8
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.78
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.78
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.78
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.77
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.77
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.76
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.75
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.74
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.73
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.68
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.68
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.68
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.67
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.67
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.66
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.64
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.62
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.62
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.61
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.6
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.59
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.58
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.57
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.56
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.55
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.54
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.51
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.4
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.39
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.38
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.38
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.34
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.24
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.24
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.22
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.22
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.21
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.19
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.15
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.14
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.12
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.1
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.06
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.05
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.96
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.91
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.87
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.86
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.84
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.83
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.8
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.75
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.71
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.7
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.66
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.65
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.61
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.59
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.59
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.59
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.58
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.39
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	98.37
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.37
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.36
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.36
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.27
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.05
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.85
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.83
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.66
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.63
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.54
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.5
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.46
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.42
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.32
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.28
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.18
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.0
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.97
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.97
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.89
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.77
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.68
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.67
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.66
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.56
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.42
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.2
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.1
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.74
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.29
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.28
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.26
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.14
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.99
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.9
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	94.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.61
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.04
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.03
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.99
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.98
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.7
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.36
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.87
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.36
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.93
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.04
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.35
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.4
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	86.91
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	85.19
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.83
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.69
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	84.55
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	84.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.65
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.62
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.36
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.33
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.19
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.82
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.75
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	82.26
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	81.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.78
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.27
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	80.59
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.28

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=100.00  E-value=2.3e-33  Score=249.00  Aligned_cols=268  Identities=22%  Similarity=0.310  Sum_probs=191.6

Q ss_pred             hhhHHHHhhhh--hHHHHHhhc-CCceeecCC---CCCCCHHHHHHHHH----HHHHHhcCCCCCCEEEEECCCCChHHH
Q 018194           69 VPDFVDTFYNL--VTDIYEWGW-GQSFHFSPS---IPGKSHRDATRLHE----EMAVDLIDVKAGDRILDVGCGVGGPMR  138 (359)
Q Consensus        69 ~~~~v~~~yd~--~~~~y~~~~-~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~vLDiGcG~G~~~~  138 (359)
                      ..+.+..|||.  ...||+..| |+++|++..   .....+.++..+..    +.+....+++++.+|||||||+|.++.
T Consensus         4 ~~~~~~~~y~~~~~~~fy~~~w~g~~~h~G~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~   83 (282)
T d2o57a1           4 VKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAAR   83 (282)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHHHcCCCCceeeecCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHh
Confidence            45667889998  679998888 577887642   22345555554444    444445588899999999999999999


Q ss_pred             HHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccC
Q 018194          139 AIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLK  218 (359)
Q Consensus       139 ~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk  218 (359)
                      .|++..+++|+|+|+|+.|++.|+++....++.++++++++|+.++|+++++||+|++..+++|++|+..+++++.++||
T Consensus        84 ~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk  163 (282)
T d2o57a1          84 FLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK  163 (282)
T ss_dssp             HHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE
T ss_pred             hhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHHHHHHHhcC
Confidence            99987788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchh
Q 018194          219 PGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFA  298 (359)
Q Consensus       219 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~  298 (359)
                      |||++++.++.........  ....+....    ..+.+.+.+++.++|+++||+++...+.+... ..++.        
T Consensus       164 pgG~l~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~-~~~~~--------  228 (282)
T d2o57a1         164 PRGVMAITDPMKEDGIDKS--SIQPILDRI----KLHDMGSLGLYRSLAKECGLVTLRTFSRPDSL-VHHYS--------  228 (282)
T ss_dssp             EEEEEEEEEEEECTTCCGG--GGHHHHHHH----TCSSCCCHHHHHHHHHHTTEEEEEEEECHHHH-HHHHH--------
T ss_pred             CCcEEEEEEeecCCCCchh--HHHHHHHHh----ccCCCCCHHHHHHHHHHcCCceEEEEECcHhH-HHHHH--------
Confidence            9999999988775443322  112222222    23456688999999999999999988763211 01111        


Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCCC
Q 018194          299 YWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHP  355 (359)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~~  355 (359)
                      .+........   ..+......+..+.+......+.+....+.+. ..++++|||++
T Consensus       229 ~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~-~g~~varK~~~  281 (282)
T d2o57a1         229 KVKAELIKRS---SEIASFCSPEFQANMKRGLEHWIEGGRAGKLT-WGGMLFRKSDK  281 (282)
T ss_dssp             HHHHHHHHTH---HHHTTTSCHHHHHHHHHHHHHHHHHHHTTSEE-EEEEEEEESSC
T ss_pred             HHHHHHHHHH---HHHHhhcCHHHHHHHHHHHHHHHHHHhCCeeE-EEEEEEEcCCC
Confidence            1111111111   11222333444444444444444444344333 56788999975

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-32  Score=242.85  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=199.6

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      ++..+.|..|||..++||+.++|++++|+..+   +.+++.+++.+..+.+++.+.+++|++|||||||.|.++..+++.
T Consensus         3 ~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~   82 (291)
T d1kpia_           3 KPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE   82 (291)
T ss_dssp             CCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCcHhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHh
Confidence            34568999999999999999999999998764   667899999999999999999999999999999999999999987


Q ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCC---------HHHHHHHHH
Q 018194          144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPK---------LEDVYAEVF  214 (359)
Q Consensus       144 ~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~l~~~~  214 (359)
                      .+++|+|+++|+++++.+++++...++..++.+...|..   +.+++||.|++..+++|+++         ...+++++.
T Consensus        83 ~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~  159 (291)
T d1kpia_          83 YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFY  159 (291)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHH
T ss_pred             cCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHH
Confidence            789999999999999999999999999989999888874   34689999999999999975         589999999


Q ss_pred             hccCCCCEEEEEEeeeCccccc-----Cc----h-HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCC
Q 018194          215 RVLKPGSLYVSYEWVTTDKYEA-----EN----K-EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPP  284 (359)
Q Consensus       215 ~~LkpgG~l~~~~~~~~~~~~~-----~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~  284 (359)
                      ++|||||++++..++..+....     ..    . ....+...++.+..+   .+..++...++++||++++.+++..++
T Consensus       160 ~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~l---ps~~~~~~~~e~~gl~v~~~~~~~~hY  236 (291)
T d1kpia_         160 NLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRL---PRISQVDYYSSNAGWKVERYHRIGANY  236 (291)
T ss_dssp             HTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCC---CCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred             HhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCCC---CCHHHHHhhhcccccccceeeeccccH
Confidence            9999999999988775432211     00    1 112333445555444   477899999999999999998885432


Q ss_pred             CCchhhhhhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccc
Q 018194          285 AQPWWTRLKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIF  342 (359)
Q Consensus       285 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  342 (359)
                           .    .....|...+.....+...+-.+...+...++...+++....+...++
T Consensus       237 -----a----~TL~~W~~~f~~~~~ei~~l~g~~~~r~W~~yl~~ce~~F~~~~~~v~  285 (291)
T d1kpia_         237 -----V----PTLNAWADALQAHKDEAIALKGQETCDIYMHYLRGCSDLFRDKYTDVC  285 (291)
T ss_dssp             -----H----HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEE
T ss_pred             -----H----HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence                 1    123344444433333322221122234455566666666666655433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.6e-32  Score=238.99  Aligned_cols=260  Identities=18%  Similarity=0.223  Sum_probs=200.7

Q ss_pred             cchhhHHHHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh
Q 018194           67 EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH  143 (359)
Q Consensus        67 ~~~~~~v~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~  143 (359)
                      ++..++|+.|||..++||..+||++++|++.+   +.+++.+++.+..+.+++.+.+.||.+|||||||.|.++..+++.
T Consensus         4 ~~~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~   83 (285)
T d1kpga_           4 KPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK   83 (285)
T ss_dssp             CCCHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CccHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhc
Confidence            45678999999999999999999999997764   567899999999999999999999999999999999999999997


Q ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCC
Q 018194          144 SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGS  221 (359)
Q Consensus       144 ~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG  221 (359)
                      .|++|+|+++|+.+++.|+++....++.+++++..+|..+++   ++||.|++..+++|+.  +...+++++.++|||||
T Consensus        84 ~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG  160 (285)
T d1kpga_          84 YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADG  160 (285)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC
T ss_pred             CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCC
Confidence            789999999999999999999999999999999999997764   6899999999999994  56899999999999999


Q ss_pred             EEEEEEeeeCccccc------Cc----hHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhh
Q 018194          222 LYVSYEWVTTDKYEA------EN----KEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTR  291 (359)
Q Consensus       222 ~l~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~  291 (359)
                      ++++.+++.......      ..    .....+...++.+..+|   +.+++..+++++||++++.+++..++       
T Consensus       161 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP---sl~~~~~~~e~agf~v~~~~~~~~hY-------  230 (285)
T d1kpga_         161 VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP---SIPMVQECASANGFTVTRVQSLQPHY-------  230 (285)
T ss_dssp             EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC---CHHHHHHHHHTTTCEEEEEEECHHHH-------
T ss_pred             cEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC---ChhhHHHHHHHhchhhcccccchhhH-------
Confidence            999988764322111      00    11223444555554444   77899999999999999998874221       


Q ss_pred             hhccchhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCcccc
Q 018194          292 LKMGRFAYWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGI  341 (359)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  341 (359)
                        ...+..|...+-....+...+-.+...+...++...+....+.|...+
T Consensus       231 --arTl~~W~~~f~~~~~ei~~~~~~~~~rrw~~Yl~~c~~~F~~g~~~v  278 (285)
T d1kpga_         231 --AKTLDLWSAALQANKGQAIALQSEEVYERYMKYLTGCAEMFRIGYIDV  278 (285)
T ss_dssp             --HHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence              223455655554444443333333333334444455555565555443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.9e-33  Score=243.82  Aligned_cols=264  Identities=19%  Similarity=0.275  Sum_probs=199.7

Q ss_pred             HHhhhhhHHHHHhhcCCceeecCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEE
Q 018194           74 DTFYNLVTDIYEWGWGQSFHFSPSI---PGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVG  150 (359)
Q Consensus        74 ~~~yd~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  150 (359)
                      +.|||..++||+.+++++++|+..+   +.+++.+++.+..+.+++.+.++||++|||||||+|.++..+++..+++|+|
T Consensus         1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~g   80 (280)
T d2fk8a1           1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIG   80 (280)
T ss_dssp             GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEE
T ss_pred             CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEE
Confidence            3699999999999999999998763   4568999999999999999999999999999999999999999877899999


Q ss_pred             EeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          151 ITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       151 ~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +|+|+++++.|++++++.++..++.+...|..+.   +++||.|++..+++|++  +...+++++.++|||||++++.+.
T Consensus        81 i~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1          81 LTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             EESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence            9999999999999999999988899988887765   47899999999999996  568999999999999999999775


Q ss_pred             eeCcccccCc---------hH-HHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCCCCchhhhhhccchh
Q 018194          229 VTTDKYEAEN---------KE-HVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKPPAQPWWTRLKMGRFA  298 (359)
Q Consensus       229 ~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~~~~~w~~~~~~~~~~  298 (359)
                      .....+....         .. ...+...++++..+   .+.+++.+.++++||++++.+++..+     +.    ....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~l---PS~~~l~~~~e~aGf~v~~~~~~~~h-----Ya----~TL~  225 (280)
T d2fk8a1         158 VSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL---PSTEMMVEHGEKAGFTVPEPLSLRPH-----YI----KTLR  225 (280)
T ss_dssp             ECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC---CCHHHHHHHHHHTTCBCCCCEECHHH-----HH----HHHH
T ss_pred             eccCcchhhhcccccccccccccchhhhhccCCCcc---cchHhhhhhHHhhccccceeeecccC-----HH----HHHH
Confidence            5433221110         11 12233344444433   47889999999999999988876422     11    2234


Q ss_pred             HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhcCccccccceeeEEEecCCCC
Q 018194          299 YWRNHILVTILAALGIAPKGTVGVHDMLFKTADYLTRGGETGIFTPMHMVLLRKPHPP  356 (359)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~arKP~~~  356 (359)
                      .|.........+...+-.....+....+...++...+.+..+    .+-++..||..+
T Consensus       226 ~W~~~f~~~~~~i~~~~~~~~~r~w~~yl~~c~~~F~~~~~~----~~q~~~~kpg~~  279 (280)
T d2fk8a1         226 IWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYFTDEMLD----CSLVTYLKPGAA  279 (280)
T ss_dssp             HHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSCE----EEEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcc----EEEEEEEcCCcC
Confidence            565555444433333322222333444445555556666555    444899999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.97  E-value=2.4e-30  Score=222.62  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=133.1

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+++.++++++++|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ++++++++|+.++|+++++|
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccc
Confidence            45777889999999999999999999999986 57999999999999999999988876 47999999999999999999


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCC
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVG  271 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  271 (359)
                      |+|++..+++|++|+..+++++.++|||||++++.++.......  ............. ......++..++.++|+++|
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG  159 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDA--FDVFYNYVEKERD-YSHHRAWKKSDWLKMLEEAG  159 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHH--HHHHHHHHHHHHC-TTCCCCCBHHHHHHHHHHHT
T ss_pred             ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhcc-cCcccCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999998765432110  0111111111111 22235668899999999999


Q ss_pred             CeEEEEEec
Q 018194          272 FEVVKEKDL  280 (359)
Q Consensus       272 F~~i~~~~~  280 (359)
                      |++++.+.+
T Consensus       160 f~~~~~~~~  168 (231)
T d1vl5a_         160 FELEELHCF  168 (231)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999887655

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=5.9e-28  Score=207.98  Aligned_cols=162  Identities=17%  Similarity=0.240  Sum_probs=135.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+.+++.++++||.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....++ +++.++++|++++|+++++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccc
Confidence            456788999999999999999999999999986 47999999999999999999988876 4799999999999999999


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHh---hhhcCCCCCCCCCHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQ---GIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ||+|+|..+++|++|+..+++++.++|||||++++.++....     .+....+..   ..... ......+..++..++
T Consensus        83 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  156 (234)
T d1xxla_          83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE-----DPVLDEFVNHLNRLRDP-SHVRESSLSEWQAMF  156 (234)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS-----SHHHHHHHHHHHHHHCT-TCCCCCBHHHHHHHH
T ss_pred             cceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC-----CHHHHHHHHHHHhhCCC-cccccCCHHHHHHHH
Confidence            999999999999999999999999999999999998765432     122222222   12222 223455788999999


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      +++||.+.....+
T Consensus       157 ~~~gf~~~~~~~~  169 (234)
T d1xxla_         157 SANQLAYQDIQKW  169 (234)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHCCCceeEEEEe
Confidence            9999988776655

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.2e-26  Score=201.07  Aligned_cols=166  Identities=17%  Similarity=0.187  Sum_probs=137.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+...+.+.||++|||||||+|..+..+++..+++|+|+|+|+.|++.|+++....++.++++|+++|+.++ ++
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~   97 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VA   97 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cc
Confidence            34566788899999999999999999999999998777999999999999999999999999988999999999987 46


Q ss_pred             CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          188 DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      +++||+|++..+++|++|+..++++++++|||||++++.+......  +.......    .........+.+..++...+
T Consensus        98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  171 (245)
T d1nkva_          98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL--PATEEIAQ----ACGVSSTSDFLTLPGLVGAF  171 (245)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTC--CSSHHHHH----TTTCSCGGGSCCHHHHHHHH
T ss_pred             cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCC--CChHHHHH----HhccCCCcccCCHHHHHHHH
Confidence            7899999999999999999999999999999999999987554321  11112111    11122233466889999999


Q ss_pred             HhCCCeEEEEEec
Q 018194          268 KRVGFEVVKEKDL  280 (359)
Q Consensus       268 ~~aGF~~i~~~~~  280 (359)
                      +++||+++.....
T Consensus       172 ~~aG~~~v~~~~~  184 (245)
T d1nkva_         172 DDLGYDVVEMVLA  184 (245)
T ss_dssp             HTTTBCCCEEEEC
T ss_pred             HHcCCEEEEEEeC
Confidence            9999998876554

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.5e-25  Score=188.18  Aligned_cols=149  Identities=14%  Similarity=0.156  Sum_probs=121.4

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI  197 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  197 (359)
                      ....++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...+. .+++|.++|++++++++++||+|++.
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccc
Confidence            35567789999999999999998765456999999999999999999887664 46899999999999888999999999


Q ss_pred             ccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEE
Q 018194          198 EATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVV  275 (359)
Q Consensus       198 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i  275 (359)
                      .+++|+++.  .+++++++++|||||.+++.++.........             .......++.+++.++++++||+++
T Consensus       135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD-------------DVDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE-------------TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc-------------cCCceeeCCHHHHHHHHHHcCCEEE
Confidence            999999864  5899999999999999999886654321110             0111123478899999999999999


Q ss_pred             EEEec
Q 018194          276 KEKDL  280 (359)
Q Consensus       276 ~~~~~  280 (359)
                      +.+..
T Consensus       202 ~~~~q  206 (222)
T d2ex4a1         202 AEERQ  206 (222)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.9e-24  Score=180.40  Aligned_cols=140  Identities=20%  Similarity=0.239  Sum_probs=111.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      .++.+|||||||+|.++..++     +++|+|+|+.|++.++++        ++.++++|++++++++++||+|++..++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI  101 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccc
Confidence            356689999999999887763     468999999999998864        4899999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcC---CCCCCCCCHHHHHHHHHhCCCeEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERG---DALPGLRSYAEITEIAKRVGFEVVKE  277 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~i~~  277 (359)
                      +|++|+..+++++.++|+|||.+++.++.....       ...........   .....+++.+++.++|+++||+++++
T Consensus       102 ~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v  174 (208)
T d1vlma_         102 CFVDDPERALKEAYRILKKGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  174 (208)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccccccccchhhhhhcCCCCceEEEEecCCcch-------hHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence            999999999999999999999999976543211       11111111111   11224678999999999999999887


Q ss_pred             Eec
Q 018194          278 KDL  280 (359)
Q Consensus       278 ~~~  280 (359)
                      ...
T Consensus       175 ~~~  177 (208)
T d1vlma_         175 VQT  177 (208)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=7e-23  Score=174.76  Aligned_cols=156  Identities=17%  Similarity=0.240  Sum_probs=119.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      .+++.+|||||||+|..+..+++.   ++++|+|+|+|+.|++.|+++....+...++++..+|+.+.+  .+.+|+|++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEE
Confidence            457889999999999999999873   678999999999999999999988777778888898887765  467899999


Q ss_pred             cccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCC---------------CCCCCC
Q 018194          197 IEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDA---------------LPGLRS  259 (359)
Q Consensus       197 ~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~  259 (359)
                      ..+++|++  ++..+|++++++|||||.+++.+.......... .........+....+               .....+
T Consensus       115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  193 (225)
T d1im8a_         115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN-HLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS  193 (225)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHH-HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred             eeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence            99999985  788999999999999999999876543221111 111111111000000               123468


Q ss_pred             HHHHHHHHHhCCCeEEEEE
Q 018194          260 YAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       260 ~~~~~~~l~~aGF~~i~~~  278 (359)
                      .+++.++|+++||+.++..
T Consensus       194 ~~~~~~~L~~aGF~~v~~~  212 (225)
T d1im8a_         194 IETHKVRLKNVGFSQVELW  212 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEe
Confidence            8999999999999988763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.89  E-value=1.4e-22  Score=175.87  Aligned_cols=165  Identities=21%  Similarity=0.254  Sum_probs=129.3

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      +.++..++..+..+|||||||+|.++..+++ .++.+++++|+ +.+++.++++....++.++++++.+|+.+. .+ .+
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~-~~  146 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP-RK  146 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-SC
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cc-cc
Confidence            5567778888889999999999999999998 46789999998 679999999999999989999999998763 33 57


Q ss_pred             cceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCch-HHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK-EHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      ||+|++..++||+++.  ..+|++++++|||||++++.|............ ....+......+.   ..++.+++.++|
T Consensus       147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g---~~rt~~e~~~ll  223 (253)
T d1tw3a2         147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGG---ALRTREKWDGLA  223 (253)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSC---CCCBHHHHHHHH
T ss_pred             hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCC---cCCCHHHHHHHH
Confidence            9999999999999865  478999999999999999988655332221111 1111111111111   346889999999


Q ss_pred             HhCCCeEEEEEecCC
Q 018194          268 KRVGFEVVKEKDLAK  282 (359)
Q Consensus       268 ~~aGF~~i~~~~~~~  282 (359)
                      +++||+++++..+..
T Consensus       224 ~~AGf~~~~v~~~~~  238 (253)
T d1tw3a2         224 ASAGLVVEEVRQLPS  238 (253)
T ss_dssp             HHTTEEEEEEEEEEC
T ss_pred             HHCCCeEEEEEECCC
Confidence            999999999888743

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.89  E-value=1.1e-22  Score=176.23  Aligned_cols=157  Identities=13%  Similarity=0.080  Sum_probs=124.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....+++.+...++.+|||+|||+|.++..|+.....+|+++|+|+.|++.|+++....   .++++.++|+.++++++
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCC
Confidence            344566777777788899999999999999888654468999999999999999886543   46899999999998888


Q ss_pred             CccceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ++||+|++..+++|++|.  ..+|+++.++|||||.+++.+...........            .......++.+.+.++
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d------------~~d~~~~rs~~~~~~l  224 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD------------KEDSSLTRSDIHYKRL  224 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE------------TTTTEEEBCHHHHHHH
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec------------ccCCceeCCHHHHHHH
Confidence            999999999999999864  58899999999999999998755432111100            0011124578899999


Q ss_pred             HHhCCCeEEEEEec
Q 018194          267 AKRVGFEVVKEKDL  280 (359)
Q Consensus       267 l~~aGF~~i~~~~~  280 (359)
                      ++++||++++.+..
T Consensus       225 ~~~aGf~ii~~~~q  238 (254)
T d1xtpa_         225 FNESGVRVVKEAFQ  238 (254)
T ss_dssp             HHHHTCCEEEEEEC
T ss_pred             HHHcCCEEEEEEee
Confidence            99999999987653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.88  E-value=4.3e-21  Score=168.86  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=118.5

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEe
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYS  196 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  196 (359)
                      .+..+.+|||||||+|.++..+++.  .+.+|+|+|+|+.+++.|+++....+.  +++|.++|+.+++++ ++||+|++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-~~fD~v~~  100 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAIC  100 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEEE
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc-CCceEEEE
Confidence            5667789999999999999999985  247999999999999999999887653  699999999998875 57999999


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcc-----cccC-------chHHHHHHhhhhcCCCCCCCCCHHHHH
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDK-----YEAE-------NKEHVDIIQGIERGDALPGLRSYAEIT  264 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (359)
                      ..+++|++|+..+|+++.++|||||++++.+......     ....       ...+...........+. ......++.
T Consensus       101 ~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~  179 (281)
T d2gh1a1         101 HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK-DGNIGMKIP  179 (281)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCC-CTTGGGTHH
T ss_pred             ehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCC-CCCHHHHHH
Confidence            9999999999999999999999999999987432100     0000       01111222222111111 111224688


Q ss_pred             HHHHhCCCeEEEEEec
Q 018194          265 EIAKRVGFEVVKEKDL  280 (359)
Q Consensus       265 ~~l~~aGF~~i~~~~~  280 (359)
                      .+|+++||+.++....
T Consensus       180 ~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         180 IYLSELGVKNIECRVS  195 (281)
T ss_dssp             HHHHHTTCEEEEEEEC
T ss_pred             HHHHHcCCeEEEEEEe
Confidence            8999999999987654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.86  E-value=3.2e-21  Score=164.30  Aligned_cols=148  Identities=11%  Similarity=0.108  Sum_probs=114.2

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ..+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.     ..++.++++|+.+.++ +++||+|++..++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~-~~~fD~I~~~~vl   91 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL-PRRYDNIVLTHVL   91 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc-cccccccccccee
Confidence            34678999999999999999886 579999999999999998774     3479999999998775 5799999999999


Q ss_pred             cccCCHHHHHHHHH-hccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhc----------CCCCCCCCCHHHHHHHHHh
Q 018194          201 CHAPKLEDVYAEVF-RVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIER----------GDALPGLRSYAEITEIAKR  269 (359)
Q Consensus       201 ~~~~~~~~~l~~~~-~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~  269 (359)
                      +|++|+..+|.+++ ++|||||.+++..+.....     ............          .......++.+++.+++++
T Consensus        92 eh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~  166 (225)
T d2p7ia1          92 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  166 (225)
T ss_dssp             GGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             EecCCHHHHHHHHHHHhcCCCceEEEEeCCcccH-----HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence            99999999999998 8999999999864322110     000000000000          0112246689999999999


Q ss_pred             CCCeEEEEEec
Q 018194          270 VGFEVVKEKDL  280 (359)
Q Consensus       270 aGF~~i~~~~~  280 (359)
                      +||++++...+
T Consensus       167 ~Gf~i~~~~~~  177 (225)
T d2p7ia1         167 AGLQVTYRSGI  177 (225)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCEEEEEEEE
Confidence            99999987754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1e-21  Score=167.28  Aligned_cols=114  Identities=32%  Similarity=0.497  Sum_probs=99.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ...+.+.+  +++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.  ++.++.+|+.++++++++
T Consensus        28 ~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~~~~~  102 (226)
T d1ve3a1          28 EPLLMKYM--KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSFEDKT  102 (226)
T ss_dssp             HHHHHHSC--CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCSCTTC
T ss_pred             HHHHHHhc--CCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccc--cccccccccccccccCcC
Confidence            33444443  46789999999999999999985 68999999999999999999887763  578999999999999999


Q ss_pred             cceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEee
Q 018194          191 FDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       191 fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ||+|++..+++|++  |+.++|+++.++|||||++++..+.
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            99999999999997  6788999999999999999886543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.86  E-value=5.4e-21  Score=165.20  Aligned_cols=101  Identities=19%  Similarity=0.319  Sum_probs=88.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec-ccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI-EAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l  200 (359)
                      ++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++....++  +++++++|+.+++++ ++||+|+|. .++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~i~~~~~~~  112 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST  112 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhccc-ccccccceeeeee
Confidence            4579999999999999999986 57999999999999999999887765  589999999988764 689999986 577


Q ss_pred             cccC---CHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAP---KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~---~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +|+.   ++..+|++++++|||||.+++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            7775   5677999999999999999873

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.5e-21  Score=165.42  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEec-cc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSI-EA  199 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~  199 (359)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++..       ..++.+|++++++++++||+|++. .+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~~~~~fD~ii~~~~~  112 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPFPSGAFEAVLALGDV  112 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCSCTTCEEEEEECSSH
T ss_pred             CCCCEEEEECCCCchhccccccc-ceEEEEeecccccccccccccc-------cccccccccccccccccccceeeecch
Confidence            36779999999999999999985 7899999999999999988631       247789999999999999999985 58


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++|++|+..+|+++.++|||||.+++..
T Consensus       113 ~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         113 LSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             HHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            9999999999999999999999999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.85  E-value=1.4e-20  Score=163.18  Aligned_cols=165  Identities=23%  Similarity=0.281  Sum_probs=126.8

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ..+++.++..+..+|||||||+|.++..+++ +|+.+++++|+ |.+++.++++.+..++.+++.++.+|+.+ +.+ ..
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~  147 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VT  147 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CC
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-cc
Confidence            4566677788888999999999999999998 57889999998 88999999999999988999999999976 444 46


Q ss_pred             cceEEecccccccCCH--HHHHHHHHhccCCCCEEEEEEeeeCcccccCc--hHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          191 FDGAYSIEATCHAPKL--EDVYAEVFRVLKPGSLYVSYEWVTTDKYEAEN--KEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      ||+|++.+++|++++.  .++|++++++|||||++++.|...........  .....+......+ +  ..++.+++.++
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~-g--~~rt~~e~~~l  224 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMG-G--RVRTRDEVVDL  224 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHS-C--CCCCHHHHHHH
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCC-C--ccCCHHHHHHH
Confidence            9999999999999864  57899999999999999999865432211111  1111111111111 1  34688999999


Q ss_pred             HHhCCCeEEEEEecCC
Q 018194          267 AKRVGFEVVKEKDLAK  282 (359)
Q Consensus       267 l~~aGF~~i~~~~~~~  282 (359)
                      |+++||++++......
T Consensus       225 l~~AGf~~~~~~~~~~  240 (256)
T d1qzza2         225 AGSAGLALASERTSGS  240 (256)
T ss_dssp             HHTTTEEEEEEEEECC
T ss_pred             HHHCCCceeEEEEeCC
Confidence            9999999999887643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=3.3e-21  Score=166.96  Aligned_cols=112  Identities=27%  Similarity=0.451  Sum_probs=96.0

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      ...+.+.....++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++...++  ++++.++|+++++++ ++
T Consensus        30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~  105 (251)
T d1wzna1          30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NE  105 (251)
T ss_dssp             HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SC
T ss_pred             HHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc-cc
Confidence            344555566677889999999999999999985 67999999999999999999888765  589999999999876 68


Q ss_pred             cceEEec-cccccc--CCHHHHHHHHHhccCCCCEEEEE
Q 018194          191 FDGAYSI-EATCHA--PKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       191 fD~v~~~-~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ||+|++. .+++|+  +++..+|++++++|||||++++.
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999986 466776  36779999999999999999873

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.83  E-value=9.2e-21  Score=164.25  Aligned_cols=108  Identities=23%  Similarity=0.308  Sum_probs=94.5

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEecc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF-EDNHFDGAYSIE  198 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~  198 (359)
                      .+++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+...++.+.++|+...++ ..++||+|+|.+
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            4578999999999999999998864568999999999999999998887777789999999987665 467899999999


Q ss_pred             cccccC----CHHHHHHHHHhccCCCCEEEEEE
Q 018194          199 ATCHAP----KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       199 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +++|+.    +...+++++.++|||||++++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            999984    35689999999999999998854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=6.1e-20  Score=153.13  Aligned_cols=138  Identities=21%  Similarity=0.261  Sum_probs=108.3

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      .+.+|||||||+|..+..++++ +.+|+|+|+|+.|++.++++....+++ ++++...|+..+++ +++||+|++..+++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-DGEYDFILSTVVMM  106 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-cccccEEEEeeeee
Confidence            3459999999999999999986 689999999999999999999888875 79999999998775 58899999999999


Q ss_pred             ccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEE
Q 018194          202 HAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEK  278 (359)
Q Consensus       202 ~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~  278 (359)
                      |+++  ...+++++.++|+|||++++...........              ....+...+..++.+.+  +||+++...
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~el~~~~--~~~~i~~~~  169 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPC--------------TVGFPFAFKEGELRRYY--EGWDMLKYN  169 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-----------------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCC--------------CCCCCCccCHHHHHHHh--CCCeEEEee
Confidence            9974  5689999999999999999876543221110              01112334455777776  589887654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-21  Score=169.28  Aligned_cols=152  Identities=16%  Similarity=0.073  Sum_probs=111.1

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC--------------------------
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSL--------------------------  173 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~--------------------------  173 (359)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++........                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            346789999999999998777765345899999999999999998775432110                          


Q ss_pred             --e-EEEEc----CCCCCCCCCCccceEEecccccccC----CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHH
Q 018194          174 --C-EVVCG----NFLKMPFEDNHFDGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHV  242 (359)
Q Consensus       174 --i-~~~~~----d~~~~~~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  242 (359)
                        + .....    +....+++.++||+|++.++++|++    ++..+++++.++|||||++++.++.....+......  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~--  206 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE--  206 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE--
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccc--
Confidence              0 11111    2222356778999999999999985    567899999999999999999876654333221110  


Q ss_pred             HHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEecCCC
Q 018194          243 DIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDLAKP  283 (359)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~~~~  283 (359)
                                .....++.+++.++|++|||++++.+.....
T Consensus       207 ----------~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~  237 (257)
T d2a14a1         207 ----------FSCVALEKGEVEQAVLDAGFDIEQLLHSPQS  237 (257)
T ss_dssp             ----------EECCCCCHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred             ----------ccccCCCHHHHHHHHHHCCCEEEEEEEeccc
Confidence                      0123568899999999999999998766443

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=1e-19  Score=154.28  Aligned_cols=145  Identities=16%  Similarity=0.138  Sum_probs=116.2

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccce
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNHFDG  193 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~  193 (359)
                      +.++++||++|||+|||+|..+..+++. ++..|+|+|+|+.|++.+++++...   +++.++.+|....+ +.+..+|+
T Consensus        68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccccccee
Confidence            4567899999999999999999999985 5679999999999999999887653   47888999987753 45567888


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      +++...+++.++...++.++++.|||||.+++............ +.                 ...++..+.|+++||+
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~-~~-----------------~~~~e~~~~L~~aGF~  206 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD-PK-----------------EIFKEQKEILEAGGFK  206 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC-HH-----------------HHHHHHHHHHHHHTEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC-HH-----------------HHHHHHHHHHHHcCCE
Confidence            88888888888999999999999999999998765443221111 00                 0125778899999999


Q ss_pred             EEEEEecC
Q 018194          274 VVKEKDLA  281 (359)
Q Consensus       274 ~i~~~~~~  281 (359)
                      +++..++.
T Consensus       207 ive~idL~  214 (230)
T d1g8sa_         207 IVDEVDIE  214 (230)
T ss_dssp             EEEEEECT
T ss_pred             EEEEecCC
Confidence            99988873

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.81  E-value=1.1e-19  Score=151.46  Aligned_cols=148  Identities=18%  Similarity=0.185  Sum_probs=113.9

Q ss_pred             HHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCeEEEEcCCCC
Q 018194          115 VDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL-----------DSLCEVVCGNFLK  183 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~  183 (359)
                      ...+.+.|+.+|||+|||+|..+..||++ |.+|+|+|+|+.|++.|+++....+.           ..++.+.++|+.+
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            44567889999999999999999999986 78999999999999999998754322           2356889999988


Q ss_pred             CC-CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCH
Q 018194          184 MP-FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSY  260 (359)
Q Consensus       184 ~~-~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (359)
                      ++ .....||+|++..+++|++  +....++++.++|||||.+++..........                .+.+...+.
T Consensus        92 l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~----------------~~p~~~~~~  155 (201)
T d1pjza_          92 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL----------------EGPPFSVPQ  155 (201)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS----------------SSCCCCCCH
T ss_pred             cccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC----------------CCccccCCH
Confidence            75 3446899999999999997  4779999999999999999876543322111                111233467


Q ss_pred             HHHHHHHHhCCCeEEEEEec
Q 018194          261 AEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       261 ~~~~~~l~~aGF~~i~~~~~  280 (359)
                      +++.+++. .+|++...+..
T Consensus       156 ~el~~l~~-~~~~i~~~~~~  174 (201)
T d1pjza_         156 TWLHRVMS-GNWEVTKVGGQ  174 (201)
T ss_dssp             HHHHHTSC-SSEEEEEEEES
T ss_pred             HHHHHHhC-CCcEEEEEEEe
Confidence            78877774 67887655544

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-19  Score=155.69  Aligned_cols=155  Identities=13%  Similarity=0.035  Sum_probs=110.7

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhh-----c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEcCCCC------
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAH-----S--RANVVGITINEYQVNRARLHNKKAGLDSLCEV--VCGNFLK------  183 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~-----~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~------  183 (359)
                      ..++..+|||||||+|.++..+++.     +  ..+++|+|+|+.|++.++++........++.+  ...++.+      
T Consensus        37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            3455568999999999998887653     2  24789999999999999999876543344444  3333321      


Q ss_pred             CCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHH
Q 018194          184 MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                      .+.++++||+|++.++++|++|+..+|++++++|+|||.+++..+.....+   ...+......+ .......+.+..++
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~---~~l~~~~~~~~-~~~~~~~~~~~~~~  192 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW---DKLWKKYGSRF-PQDDLCQYITSDDL  192 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHH---HHHHHHHGGGS-CCCTTSCCCCHHHH
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchH---HHHHHHHHHhc-CCCcccccCCHHHH
Confidence            245678999999999999999999999999999999999998754332111   11111222222 22233456788999


Q ss_pred             HHHHHhCCCeEEEE
Q 018194          264 TEIAKRVGFEVVKE  277 (359)
Q Consensus       264 ~~~l~~aGF~~i~~  277 (359)
                      .++|++.||..+..
T Consensus       193 ~~~L~~~G~~~~~~  206 (280)
T d1jqea_         193 TQMLDNLGLKYECY  206 (280)
T ss_dssp             HHHHHHHTCCEEEE
T ss_pred             HHHHHHCCCceEEE
Confidence            99999999986554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=2.5e-19  Score=147.66  Aligned_cols=114  Identities=20%  Similarity=0.255  Sum_probs=101.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ..+..++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++..++.++++++++|+.+...+.
T Consensus        20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~   98 (186)
T d1l3ia_          20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (186)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence            34566777889999999999999999999999985 56999999999999999999999999889999999998877777


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..||+|++....+   +...+++.+.+.|||||++++.
T Consensus        99 ~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_          99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEE
Confidence            8999999987654   4578899999999999999875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.2e-19  Score=150.32  Aligned_cols=154  Identities=16%  Similarity=0.149  Sum_probs=120.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG----------------LDS  172 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----------------~~~  172 (359)
                      .+.+.+.+.+.+.++.+|||+|||+|..+..||+. |.+|+|+|+|+.+++.++++....+                ...
T Consensus        32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (229)
T d2bzga1          32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG  110 (229)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence            34455666677888999999999999999999996 7899999999999999988764321                124


Q ss_pred             CeEEEEcCCCCCC-CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhh
Q 018194          173 LCEVVCGNFLKMP-FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIE  249 (359)
Q Consensus       173 ~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (359)
                      ++++.++|+.+++ ...+.||+|+...+++|++  +....++++.++|||||++++..+......               
T Consensus       111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~---------------  175 (229)
T d2bzga1         111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK---------------  175 (229)
T ss_dssp             SEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT---------------
T ss_pred             cEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC---------------
Confidence            7899999998874 5568999999999999985  678999999999999999888655433110               


Q ss_pred             cCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          250 RGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                       ..+.|...+.+++.+++.. +|++...+..
T Consensus       176 -~~gpp~~~~~~el~~lf~~-~~~i~~le~~  204 (229)
T d2bzga1         176 -HPGPPFYVPHAEIERLFGK-ICNIRCLEKV  204 (229)
T ss_dssp             -CCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             -CCCCCCCCCHHHHHHHhcC-CCEEEEEEEe
Confidence             1123445688899999965 7877555443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.78  E-value=3.5e-19  Score=152.13  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=109.7

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...++..+++.||++|||+|||+|.++..|++.  ++.+|+++|+++++++.|+++++..+...|+++..+|+.+. +++
T Consensus        74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~  152 (250)
T d1yb2a1          74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD  152 (250)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred             HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence            456788899999999999999999999999985  55799999999999999999998877678999999999875 467


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAK  268 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (359)
                      +.||.|++     +++++..++.++.++|||||+++++..+..                           ....+.+.|+
T Consensus       153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~---------------------------Qv~~~~~~l~  200 (250)
T d1yb2a1         153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD---------------------------QSEKTVLSLS  200 (250)
T ss_dssp             CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH---------------------------HHHHHHHHSG
T ss_pred             ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcC---------------------------hHHHHHHHHH
Confidence            89999986     468899999999999999999987532110                           1235667788


Q ss_pred             hCCCeEEEEEec
Q 018194          269 RVGFEVVKEKDL  280 (359)
Q Consensus       269 ~aGF~~i~~~~~  280 (359)
                      ++||..++....
T Consensus       201 ~~gf~~i~~~E~  212 (250)
T d1yb2a1         201 ASGMHHLETVEL  212 (250)
T ss_dssp             GGTEEEEEEEEE
T ss_pred             HCCCceeEEEEE
Confidence            999998876554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.2e-18  Score=149.58  Aligned_cols=154  Identities=18%  Similarity=0.205  Sum_probs=114.9

Q ss_pred             hhcCCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 018194           86 WGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHN  165 (359)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~  165 (359)
                      ...++.+.|+.+.+     +..+...+.+.+.  ..+|.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|++++
T Consensus        91 i~i~pg~aFGTG~H-----~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na  162 (254)
T d2nxca1          91 LVIEPGMAFGTGHH-----ETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANA  162 (254)
T ss_dssp             EECCCC-----CCS-----HHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHH
T ss_pred             EEEccccccCcccc-----chhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHH
Confidence            44566666665543     2334444555444  357899999999999999988774 789999999999999999999


Q ss_pred             HHcCCCCCeEEEEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHH
Q 018194          166 KKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDII  245 (359)
Q Consensus       166 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~  245 (359)
                      +..++.  +++.++|+.+ .++.++||+|+++...+   ....++.++.++|||||++++.+....              
T Consensus       163 ~~n~~~--~~~~~~d~~~-~~~~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgil~~--------------  222 (254)
T d2nxca1         163 KRNGVR--PRFLEGSLEA-ALPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILKD--------------  222 (254)
T ss_dssp             HHTTCC--CEEEESCHHH-HGGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEGG--------------
T ss_pred             HHcCCc--eeEEeccccc-cccccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEecchh--------------
Confidence            988874  6788998865 35568999999975433   356788999999999999998653221              


Q ss_pred             hhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          246 QGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                                   ..+++.+.++++||++++....
T Consensus       223 -------------~~~~v~~~~~~~Gf~~~~~~~~  244 (254)
T d2nxca1         223 -------------RAPLVREAMAGAGFRPLEEAAE  244 (254)
T ss_dssp             -------------GHHHHHHHHHHTTCEEEEEEEE
T ss_pred             -------------hHHHHHHHHHHCCCEEEEEEEE
Confidence                         2357888999999999887654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=6.7e-19  Score=151.28  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA--GLDSLCEVVCGNFLKM  184 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~  184 (359)
                      .....++..+++.||++|||+|||+|.++..||+.  ++.+|+++|+++++++.|+++++..  +...|+.+.++|+.+.
T Consensus        83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            34577888999999999999999999999999985  5579999999999999999988764  4457999999999998


Q ss_pred             CCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          185 PFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       185 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++++++||.|++     +++++..++.++.++|||||+++++.
T Consensus       163 ~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            888999999976     57999999999999999999998854

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=2.7e-18  Score=143.45  Aligned_cols=110  Identities=10%  Similarity=0.014  Sum_probs=90.9

Q ss_pred             hcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          117 LIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       117 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      .++++||++|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++++..   .|+.++.+|+...+.....+|.+.
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd  127 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVD  127 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEE
Confidence            468899999999999999999999985 4569999999999999999998775   479999999988655445444443


Q ss_pred             -ecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          196 -SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       196 -~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                       +...+.|..+...+++++.++|||||++++....
T Consensus       128 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         128 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence             2234666678899999999999999999987643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.5e-18  Score=150.08  Aligned_cols=139  Identities=20%  Similarity=0.260  Sum_probs=116.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      ....+++..+++.||++|||+|||+|.++..+|+.  ++++|+++|+++++++.|+++++..++..++.+...|+.. .+
T Consensus        90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~  168 (266)
T d1o54a_          90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF  168 (266)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred             HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence            34567899999999999999999999999999985  4579999999999999999999999988899999999755 35


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      +...||.|+.     +++++..+++++.++|||||+++++..+..                           ....+.+.
T Consensus       169 ~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~---------------------------Qv~~~~~~  216 (266)
T d1o54a_         169 DEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN---------------------------QVQETLKK  216 (266)
T ss_dssp             SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH---------------------------HHHHHHHH
T ss_pred             cccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc---------------------------HHHHHHHH
Confidence            5678898864     678999999999999999999998542211                           12467788


Q ss_pred             HHhCCCeEEEEEec
Q 018194          267 AKRVGFEVVKEKDL  280 (359)
Q Consensus       267 l~~aGF~~i~~~~~  280 (359)
                      |++.||..+++...
T Consensus       217 l~~~gF~~i~~~E~  230 (266)
T d1o54a_         217 LQELPFIRIEVWES  230 (266)
T ss_dssp             HHHSSEEEEEEECC
T ss_pred             HHHCCceeEEEEEE
Confidence            89999998887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.4e-18  Score=147.88  Aligned_cols=150  Identities=13%  Similarity=0.051  Sum_probs=107.6

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------------------
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS--------------------------  172 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~--------------------------  172 (359)
                      ....|.+|||||||+|..+...+.....+|+|+|+|+.|++.++++..+....-                          
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            344688999999999988765555434599999999999999998765432110                          


Q ss_pred             ---CeEEEEcCCCCC------CCCCCccceEEecccccccC----CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCch
Q 018194          173 ---LCEVVCGNFLKM------PFEDNHFDGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENK  239 (359)
Q Consensus       173 ---~i~~~~~d~~~~------~~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~  239 (359)
                         .......|+...      +.+.++||+|++.++++|++    ++..+++++.++|||||.+++........+.....
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~  210 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA  210 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence               012344555431      24456899999999999985    46789999999999999999977554322211100


Q ss_pred             HHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          240 EHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                      .            ......+.+++.++|+++||++++.+..
T Consensus       211 ~------------~~~~~~t~e~v~~~l~~aGf~v~~~~~~  239 (263)
T d2g72a1         211 R------------LTVVPVSEEEVREALVRSGYKVRDLRTY  239 (263)
T ss_dssp             E------------EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             c------------cccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence            0            0113468999999999999999987665

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.7e-19  Score=152.48  Aligned_cols=104  Identities=24%  Similarity=0.337  Sum_probs=88.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEE---
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAY---  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~---  195 (359)
                      .+|.+|||||||+|..+..+++..+.+|+|+|+|+.+++.|+++....+  .++.++..|+...  ++++++||.|+   
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecc
Confidence            4688999999999999999998655799999999999999999987654  4577888876543  46778888887   


Q ss_pred             --ecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          196 --SIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 --~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        +...++|++++..++++++|+|||||+|++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence              5677888889999999999999999999874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=9.8e-18  Score=138.98  Aligned_cols=113  Identities=22%  Similarity=0.256  Sum_probs=98.7

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCCCCc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~  190 (359)
                      +.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.. ++++..+|+.+ ++++++
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~  119 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK  119 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCC
Confidence            44677788889999999999999999999885 4699999999999999999998887754 68999999987 567789


Q ss_pred             cceEEecccccccCC-HHHHHHHHHhccCCCCEEEEE
Q 018194          191 FDGAYSIEATCHAPK-LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       191 fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ||+|+++..+++..+ ...+++++.++|||||.+++.
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            999999988877665 478999999999999998774

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-17  Score=145.69  Aligned_cols=108  Identities=22%  Similarity=0.368  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +.....+...+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.|+++.      .++.+.++|+.++|+
T Consensus        71 ~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~  143 (268)
T d1p91a_          71 DAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPF  143 (268)
T ss_dssp             HHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSB
T ss_pred             HHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccC
Confidence            344444555544 35679999999999999999985 5789999999999999998763      468999999999999


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      ++++||+|++.++++|       ++++.|+|||||++++..+.
T Consensus       144 ~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         144 SDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             CTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeC
Confidence            9999999999988876       46899999999999997643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.1e-17  Score=140.43  Aligned_cols=111  Identities=18%  Similarity=0.260  Sum_probs=96.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      .....+++.+.+++|++|||||||+|..+..+++.  +..+|+++|+++.+++.|+++.+..++. |+.++++|..+...
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccc
Confidence            44566788899999999999999999999999985  3469999999999999999999988764 78999999988766


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+++||+|++..+++++++      ++.+.|||||++++.
T Consensus       141 ~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         141 EFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred             cccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence            6789999999999998873      567889999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.5e-17  Score=143.83  Aligned_cols=122  Identities=19%  Similarity=0.271  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc-------CC-CCCeEE
Q 018194          106 ATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKA-------GL-DSLCEV  176 (359)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~-------~~-~~~i~~  176 (359)
                      ......+.+++.+.++++++|||||||+|.++..+|+..++ +++|+|+|+.+++.|++.....       |. ..++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            34455677888999999999999999999999999886554 7999999999999998765542       22 357999


Q ss_pred             EEcCCCCCCCCCCcc--ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          177 VCGNFLKMPFEDNHF--DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       177 ~~~d~~~~~~~~~~f--D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +++|+.+.++.+..+  |+|++ ..+.|.++....|.++.+.|||||++++.+.
T Consensus       215 ~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         215 ERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             EECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             EECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            999999887666555  55555 5566778999999999999999999997543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.3e-16  Score=139.60  Aligned_cols=112  Identities=17%  Similarity=0.290  Sum_probs=94.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHc----------CCCCCeEEE
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKA----------GLDSLCEVV  177 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~----------~~~~~i~~~  177 (359)
                      ....|+..+++.||++|||+|||+|.++..||+.  ++.+|+++|+++++++.|+++++..          +..+|+.+.
T Consensus        86 D~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          86 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             cHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            4567888999999999999999999999999985  4579999999999999999988764          345789999


Q ss_pred             EcCCCCCC--CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          178 CGNFLKMP--FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       178 ~~d~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++|+.+..  +++..||.|+.     .+|++..++.++.++|||||+++++
T Consensus       166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         166 HKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             ESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEE
T ss_pred             ecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEE
Confidence            99998754  45678999976     4688889999999999999999985

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.6e-17  Score=143.18  Aligned_cols=114  Identities=18%  Similarity=0.277  Sum_probs=88.0

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC---CeEEEEcCCCCCC---
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS---LCEVVCGNFLKMP---  185 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~---~i~~~~~d~~~~~---  185 (359)
                      +.+...+...++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++....+...   +..+...|+..++   
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  124 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc
Confidence            44555555567789999999999999999986 6899999999999999999887655321   2345555554321   


Q ss_pred             CCCCccceEEecc-cccccCC-------HHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIE-ATCHAPK-------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~-~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...++||+|++.. +++|+++       ...+|++++++|||||+|++.
T Consensus       125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            2346899998764 7888864       567999999999999999884

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=134.01  Aligned_cols=111  Identities=23%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             HHHHHHHhc--CCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEEEEcCC
Q 018194          110 HEEMAVDLI--DVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLD----SLCEVVCGNF  181 (359)
Q Consensus       110 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~  181 (359)
                      ....+++.+  .+++|++|||||||+|..+..+++.  +..+|+++|+++++++.|++++++.++.    .++.+..+|.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            445677776  7789999999999999999999885  3569999999999999999998876542    4789999999


Q ss_pred             CCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          182 LKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       182 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+.++||+|++..++.++++      .+.+.|||||++++.
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred             ccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEE
Confidence            887777789999999999988873      578899999999984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=2.2e-16  Score=130.95  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=91.4

Q ss_pred             CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEeccc
Q 018194          123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEA  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~  199 (359)
                      +..|||||||+|..+..+|+ .++..++|+|+++.++..+.++....++. |+.++++|+..+.  ++++++|.|++.+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhccccccc
Confidence            44899999999999999998 57899999999999999999999999985 8999999998765  78899999999888


Q ss_pred             ccccCCH--------HHHHHHHHhccCCCCEEEEE
Q 018194          200 TCHAPKL--------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 l~~~~~~--------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ..|....        ..+|+++.++|||||.|.+.
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            7765432        58999999999999999884

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=3.4e-16  Score=131.74  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=89.2

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCc
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNH  190 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~  190 (359)
                      +.++++||++|||+|||+|..+..+++.  ++.+|+++|+|+.|++.++++++..   .++..+..|+....   .....
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccc
Confidence            4567899999999999999999999996  4579999999999999999987654   46788888886532   33467


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      +|+|++.  +.+.++...+++++.+.|||||++++....
T Consensus       144 vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         144 VDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             EEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence            8888763  455567889999999999999999986543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.64  E-value=2.5e-15  Score=128.05  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=113.8

Q ss_pred             HHHHHHhcC-CCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          111 EEMAVDLID-VKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       111 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+++..+ .....+|||||||+|.++..+++ +|+.+++.+|+ |..++       ..+..++++++.+|+.+ +.| 
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~-~~p-  138 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFA-SVP-  138 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTT-CCC-
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCccc-ccc-
Confidence            345566666 46668999999999999999987 68899999998 44443       33445789999999976 444 


Q ss_pred             CccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchH-HHH---HHhhhhcCCCCCCCCCHHH
Q 018194          189 NHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKE-HVD---IIQGIERGDALPGLRSYAE  262 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~  262 (359)
                       ..|++++.+++|+++|  ...+|+++++.|+|||++++.|...+......... ...   +......+ +  ..+|.++
T Consensus       139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~-g--~ert~~e  214 (244)
T d1fp1d2         139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG-G--RERTEKQ  214 (244)
T ss_dssp             -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS-C--CCEEHHH
T ss_pred             -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC-C--cCCCHHH
Confidence             3599999999999986  55899999999999999999998765433222111 111   11111111 1  3468899


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 018194          263 ITEIAKRVGFEVVKEKD  279 (359)
Q Consensus       263 ~~~~l~~aGF~~i~~~~  279 (359)
                      +.++|++|||+.+++..
T Consensus       215 ~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         215 YEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             HHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHHcCCCceEEEe
Confidence            99999999999998754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=7.9e-16  Score=137.78  Aligned_cols=112  Identities=19%  Similarity=0.216  Sum_probs=94.9

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      +.+.+.....++++|||||||+|.++..+++....+|+++|.|+ ++..|++.....++..++.++++|+.++++++++|
T Consensus        28 ~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~  106 (328)
T d1g6q1_          28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV  106 (328)
T ss_dssp             HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred             HHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccce
Confidence            34444444457899999999999999988886446999999996 67889999999999999999999999999988999


Q ss_pred             ceEEeccccccc---CCHHHHHHHHHhccCCCCEEE
Q 018194          192 DGAYSIEATCHA---PKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       192 D~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      |+|++..+.+++   .....++..+.++|||||.++
T Consensus       107 D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         107 DIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            999997666554   468889999999999999986

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.62  E-value=1.4e-15  Score=127.50  Aligned_cols=107  Identities=21%  Similarity=0.217  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ....+++.+.++++++|||||||+|..+..|++. ..+|+++|+++.+++.|+++....   .|+.++.+|........+
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~  133 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEK  133 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGC
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhh
Confidence            3455788899999999999999999999999886 569999999999999999886643   589999999876444567


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +||+|++..++.++++      .+.+.|||||++++.
T Consensus       134 pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         134 PYDRVVVWATAPTLLC------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             CEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred             hHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence            8999999999888763      467889999999873

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.62  E-value=3.8e-15  Score=123.30  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=89.2

Q ss_pred             CCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEeccc
Q 018194          123 GDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--FEDNHFDGAYSIEA  199 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~  199 (359)
                      +..|||||||+|..+..+|+ +++..++|+|+++.++..|.+++...+++ |+.+..+|+.++.  +++.++|.|++.+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhccccc
Confidence            34899999999999999998 57899999999999999999999998875 8999999998865  77889999998776


Q ss_pred             ccccCC--------HHHHHHHHHhccCCCCEEEEE
Q 018194          200 TCHAPK--------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      -.+...        ...+|+.+.++|||||.+.+.
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            544332        268999999999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.61  E-value=1.6e-15  Score=126.33  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=97.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      .....+++.++++++.+|||||||+|..+..+++..+.+|+++|.++.+++.|+++..+.++ .|+.++++|..+.....
T Consensus        65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~~~  143 (215)
T d1jg1a_          65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFPPK  143 (215)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGG
T ss_pred             hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCccc
Confidence            35567788899999999999999999999999987677899999999999999999999887 48999999998865567


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++||.|++..++.++|+      .+.+.|||||++++.
T Consensus       144 ~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         144 APYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             CCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred             CcceeEEeecccccCCH------HHHHhcCCCCEEEEE
Confidence            89999999999988774      366789999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.1e-15  Score=134.28  Aligned_cols=106  Identities=21%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             CCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecc
Q 018194          119 DVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIE  198 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~  198 (359)
                      .+.++++|||||||+|.++..+++....+|+++|.|+. ...+++.....++.+++.++++|+.+++++.++||+|++..
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence            34478999999999999999888864468999999976 46777778888888899999999999998889999999876


Q ss_pred             cccccC---CHHHHHHHHHhccCCCCEEEE
Q 018194          199 ATCHAP---KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..+++.   ....++..+.++|||||.++-
T Consensus       109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            665543   578999999999999999873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.7e-15  Score=130.72  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ....+.+.+.....++.+|||||||+|.++..+|+....+|+++|.|+.+.. +++.....+..+++.++++|+.+++++
T Consensus        21 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~   99 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLP   99 (311)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCS
T ss_pred             HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCc
Confidence            3344556665566678999999999999999999864469999999998764 666677778888999999999999988


Q ss_pred             CCccceEEecccccccC---CHHHHHHHHHhccCCCCEEEE
Q 018194          188 DNHFDGAYSIEATCHAP---KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .++||+|++....++..   .+..++....++|||||+++-
T Consensus       100 ~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         100 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            89999999977666553   366778888899999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.9e-14  Score=123.93  Aligned_cols=142  Identities=15%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      +.+++.++.... ..+.+|||+|||+|..+..++. .+.++|+++|+|+..++.|++++...++. +++++++|+.+ ++
T Consensus        95 E~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~-~~  171 (274)
T d2b3ta1          95 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS-AL  171 (274)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG-GG
T ss_pred             hhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cceeeeccccc-cc
Confidence            344444555444 3457899999999999999987 57789999999999999999999999884 79999999977 45


Q ss_pred             CCCccceEEecccc-------------cccC------------CHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH
Q 018194          187 EDNHFDGAYSIEAT-------------CHAP------------KLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH  241 (359)
Q Consensus       187 ~~~~fD~v~~~~~l-------------~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  241 (359)
                      ++++||+|+++-..             .|-|            ....++.++.+.|+|||.+++ |..            
T Consensus       172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig------------  238 (274)
T d2b3ta1         172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG------------  238 (274)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC------------
T ss_pred             CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC------------
Confidence            66799999997432             1111            134688899999999999987 211            


Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE-EEec
Q 018194          242 VDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK-EKDL  280 (359)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~-~~~~  280 (359)
                                     ......+.+++++.||..++ ..|+
T Consensus       239 ---------------~~q~~~v~~~l~~~gf~~i~~~kDl  263 (274)
T d2b3ta1         239 ---------------WQQGEAVRQAFILAGYHDVETCRDY  263 (274)
T ss_dssp             ---------------SSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred             ---------------chHHHHHHHHHHHCCCCeEEEEECC
Confidence                           11236788999999998654 4444

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.57  E-value=2e-14  Score=122.47  Aligned_cols=146  Identities=13%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ...+|||||||+|.++..+++ +|+.++++.|+ |..++       ..+..++++++.+|+.+. .+  .+|++++.+++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vL  148 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTS-IP--NADAVLLKYIL  148 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTC-CC--CCSEEEEESCG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccC-CC--CCcEEEEEeec
Confidence            346899999999999999988 58899999998 44443       334567899999999873 33  57999999999


Q ss_pred             cccCCH--HHHHHHHHhccCCC---CEEEEEEeeeCcccccCchHHHHHHhhh--hcCCCCCCCCCHHHHHHHHHhCCCe
Q 018194          201 CHAPKL--EDVYAEVFRVLKPG---SLYVSYEWVTTDKYEAENKEHVDIIQGI--ERGDALPGLRSYAEITEIAKRVGFE  273 (359)
Q Consensus       201 ~~~~~~--~~~l~~~~~~Lkpg---G~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGF~  273 (359)
                      |+++|.  .++|+++++.|+||   |++++.+....+...............+  ...++  ..++.+++.++|++|||+
T Consensus       149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G--~ert~~e~~~ll~~AGf~  226 (244)
T d1fp2a2         149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNG--KERNEEEWKKLFIEAGFQ  226 (244)
T ss_dssp             GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTC--CCEEHHHHHHHHHHTTCC
T ss_pred             ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCC--cCCCHHHHHHHHHHcCCc
Confidence            999864  58999999999999   7899988766443222111111111111  11112  356889999999999999


Q ss_pred             EEEEEec
Q 018194          274 VVKEKDL  280 (359)
Q Consensus       274 ~i~~~~~  280 (359)
                      ++++...
T Consensus       227 ~~~i~~~  233 (244)
T d1fp2a2         227 HYKISPL  233 (244)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEC
Confidence            9987655

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=3.2e-14  Score=122.17  Aligned_cols=131  Identities=16%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccc
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEA  199 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  199 (359)
                      +.+|.+|||+|||+|.++..+++...++|+++|+|+.+++.++++++..++.++++++++|+.+++ +.+.||.|++...
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC
Confidence            357999999999999999999987667999999999999999999999999989999999998875 3578999987532


Q ss_pred             ccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          200 TCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       200 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                          +....++..+.++|+|||++.+++........                     -...+.+.++.+..||++..
T Consensus       184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~---------------------~~~~e~~~~~~~~~g~~v~~  235 (260)
T d2frna1         184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP---------------------REPFETFKRITKEYGYDVEK  235 (260)
T ss_dssp             ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT---------------------TTTHHHHHHHHHHTTCEEEE
T ss_pred             ----CchHHHHHHHHhhcCCCCEEEEEeccccccch---------------------hhHHHHHHHHHHHcCCceEE
Confidence                34556788899999999999887655432111                     11235677888899998753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.55  E-value=9.5e-14  Score=118.45  Aligned_cols=156  Identities=14%  Similarity=0.159  Sum_probs=111.0

Q ss_pred             HHHHHhcCC-CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDV-KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ..++...+. ....+|||||||+|.++..+++ +|+.+++++|+.+ .++       .....+++++..+|+.+ +.|. 
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~r~~~~~~d~~~-~~P~-  139 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIE-------DAPSYPGVEHVGGDMFV-SIPK-  139 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTT-------TCCCCTTEEEEECCTTT-CCCC-
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhh-------hcccCCceEEecccccc-cCCC-
Confidence            445555544 3457999999999999999998 5889999999854 332       23345689999999976 4443 


Q ss_pred             ccceEEecccccccCC--HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHH----HHHHhhhhcCCCCCCCCCHHHH
Q 018194          190 HFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEH----VDIIQGIERGDALPGLRSYAEI  263 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  263 (359)
                       .|+++...++|.+++  ...+|+++++.|+|||++++.+....+.........    ..+........+  ..++.+++
T Consensus       140 -ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g--~ert~~e~  216 (243)
T d1kyza2         140 -ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGG--KERTQKEF  216 (243)
T ss_dssp             -CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSC--CCEEHHHH
T ss_pred             -cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCC--CcCCHHHH
Confidence             478888999998874  668999999999999999999877644332221111    111111111112  33678999


Q ss_pred             HHHHHhCCCeEEEEEec
Q 018194          264 TEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       264 ~~~l~~aGF~~i~~~~~  280 (359)
                      .++|++|||+++++...
T Consensus       217 ~~ll~~AGf~~vkv~~~  233 (243)
T d1kyza2         217 EDLAKGAGFQGFKVHCN  233 (243)
T ss_dssp             HHHHHHHCCSCEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEe
Confidence            99999999999987644

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.1e-14  Score=131.84  Aligned_cols=120  Identities=16%  Similarity=0.131  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcC-------C-CCCeEE-E
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAG-------L-DSLCEV-V  177 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-------~-~~~i~~-~  177 (359)
                      -.....+++.++++++++|||||||+|..+..+|...++ +|+|+|+|+.|++.|+++.+..+       . ...+.+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            344666888899999999999999999999999986554 89999999999999998876532       1 112233 3


Q ss_pred             EcCCCCCCCC---CCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          178 CGNFLKMPFE---DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       178 ~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      .+++.+.+..   -..+|+|+++. ++|.++....|.++++.|||||++++.+.
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            4444433211   13467777654 56778999999999999999999998653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.3e-14  Score=121.61  Aligned_cols=111  Identities=22%  Similarity=0.250  Sum_probs=90.2

Q ss_pred             HHHHHHHhc--CCCCCCEEEEECCCCChHHHHHHhhc-------CCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEE
Q 018194          110 HEEMAVDLI--DVKAGDRILDVGCGVGGPMRAIAAHS-------RANVVGITINEYQVNRARLHNKKAGL----DSLCEV  176 (359)
Q Consensus       110 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~i~~  176 (359)
                      ....+++.+  .++++.+|||||||+|..+..+++..       +.+|+++|+++++++.|+++....+.    -.|+.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            345566766  78899999999999999998888742       24899999999999999887654321    147999


Q ss_pred             EEcCCCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          177 VCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       177 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .++|..+...+.++||.|++..++.++|+      .+.+.|||||++++.
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP  189 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred             EecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence            99999886556789999999999988873      467899999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=3.3e-13  Score=110.13  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=96.6

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----  185 (359)
                      .+.++..+.+.++..+||++||+|..+..+++. ++++|+|+|.++.|++.|+++....+  .++.++++++.++.    
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHH
Confidence            355677888899999999999999999999884 67899999999999999999987754  57999999998753    


Q ss_pred             -CCCCccceEEecccccc---------cCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          186 -FEDNHFDGAYSIEATCH---------APKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                       +..++||.|+....+..         +......|..+.++|+|||.+++..+.
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence             44678999987655422         234668899999999999999987644

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-11  Score=104.69  Aligned_cols=81  Identities=15%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccceE
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNHFDGA  194 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~v  194 (359)
                      +..++||+|||+|..+..|+. .++++++|+|+|+.+++.|+++++..++.+++.+.+.+.....      ..+++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            446999999999999999887 4789999999999999999999999999999999887665422      235689999


Q ss_pred             Eecccccc
Q 018194          195 YSIEATCH  202 (359)
Q Consensus       195 ~~~~~l~~  202 (359)
                      +|+--...
T Consensus       141 vsNPPY~~  148 (250)
T d2h00a1         141 MCNPPFFA  148 (250)
T ss_dssp             EECCCCC-
T ss_pred             EecCcccc
Confidence            99876553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=4.9e-13  Score=118.75  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=91.4

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CC
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PF  186 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~  186 (359)
                      ...+...  +.+|.+|||+|||+|.++..++.....+|+++|+|+.+++.+++++..+|+.++++++++|+.+.    +.
T Consensus       136 r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         136 RLALEKW--VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             HHHHGGG--CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHhh--cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh
Confidence            3444443  35789999999999999999988644599999999999999999999999988999999998763    23


Q ss_pred             CCCccceEEeccccccc---------CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          187 EDNHFDGAYSIEATCHA---------PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+||+|++.-.....         .+...++..+.++|+|||.|+++.
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            45789999985432211         134568888999999999998854

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=5.2e-13  Score=118.16  Aligned_cols=148  Identities=20%  Similarity=0.187  Sum_probs=105.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEe
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM----PFEDNHFDGAYS  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~v~~  196 (359)
                      ..|.+|||++||+|.++..++.. +.+|+++|+|+.+++.++++++..|+. +++++++|+.+.    +...++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            36889999999999999998864 579999999999999999999999984 799999998763    234578999998


Q ss_pred             cccccc---------cCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHH
Q 018194          197 IEATCH---------APKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIA  267 (359)
Q Consensus       197 ~~~l~~---------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (359)
                      .-.-..         ..+...++..+.++|||||.+++......  ..   .  ..+               .+.+.+.+
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~--~~---~--~~f---------------~~~v~~a~  279 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH--MT---E--PLF---------------YAMVAEAA  279 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT--SC---H--HHH---------------HHHHHHHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc--cC---H--HHH---------------HHHHHHHH
Confidence            643211         12345788899999999999987532211  00   0  000               12455667


Q ss_pred             HhCCCeEEEEEecCCCCCCchhhhh
Q 018194          268 KRVGFEVVKEKDLAKPPAQPWWTRL  292 (359)
Q Consensus       268 ~~aGF~~i~~~~~~~~~~~~w~~~~  292 (359)
                      +++|-+.........++-.|+...+
T Consensus       280 ~~a~~~~~~~~~~~~~~DhP~~~~~  304 (318)
T d1wxxa2         280 QDAHRLLRVVEKRGQPFDHPVLLNH  304 (318)
T ss_dssp             HHTTCCEEEEEEECCCTTSCCBTTB
T ss_pred             HHcCCCEEEEEecCCCCCCCCCCCC
Confidence            7888666555555554444554433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.34  E-value=9.5e-13  Score=103.79  Aligned_cols=103  Identities=13%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l  200 (359)
                      .|.+|||+|||+|.++.+.+.+...+|+++|.++.+++.+++++...++.++++++++|+... ....++||+|++.-..
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy   93 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY   93 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence            588999999999999998877644599999999999999999999999888899999998773 3456889999985321


Q ss_pred             cccCCHHHHHHHHH--hccCCCCEEEE
Q 018194          201 CHAPKLEDVYAEVF--RVLKPGSLYVS  225 (359)
Q Consensus       201 ~~~~~~~~~l~~~~--~~LkpgG~l~~  225 (359)
                       ........+..+.  +.|+|||.+++
T Consensus        94 -~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          94 -AKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             -HHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             -ccchHHHHHHHHHHCCCcCCCeEEEE
Confidence             1123445566554  57999999886

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=4.1e-12  Score=105.71  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          105 DATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      .....+...+++..   ...+|||+|||+|..+..+++.  .+.+|+++|+++.+++.|+++++..|+.++|+++.+|+.
T Consensus        42 ~~~G~lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~  118 (214)
T d2cl5a1          42 DAKGQIMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ  118 (214)
T ss_dssp             HHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccc
Confidence            33444445555544   3469999999999999999984  457999999999999999999999999889999999987


Q ss_pred             CC-C-----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          183 KM-P-----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       183 ~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +. +     +..++||+|+....-... .....+.+..++|||||.+++
T Consensus       119 e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         119 DLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEE
Confidence            63 2     345789999986421111 123457778899999998776

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=3e-11  Score=103.45  Aligned_cols=117  Identities=23%  Similarity=0.211  Sum_probs=86.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FE  187 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~  187 (359)
                      .+.+.+.+.....+..+|+|+|||+|..+..+++.++++|+++|+|+..++.|+++++..++..++.+..+|+.+.. ..
T Consensus        97 ~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~  176 (271)
T d1nv8a_          97 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK  176 (271)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG
T ss_pred             hhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc
Confidence            34444444433334568999999999999999888889999999999999999999999999888999999987732 23


Q ss_pred             CCccceEEecccc-----------cccC--------CHHHHHHH-HHhccCCCCEEEE
Q 018194          188 DNHFDGAYSIEAT-----------CHAP--------KLEDVYAE-VFRVLKPGSLYVS  225 (359)
Q Consensus       188 ~~~fD~v~~~~~l-----------~~~~--------~~~~~l~~-~~~~LkpgG~l~~  225 (359)
                      .++||+|+++-.-           .|-|        |-..++++ +.+.|+|||++++
T Consensus       177 ~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~  234 (271)
T d1nv8a_         177 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  234 (271)
T ss_dssp             TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence            4789999997321           1111        11123333 4578999998876

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.22  E-value=1.4e-11  Score=107.05  Aligned_cols=107  Identities=16%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC----CCCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFLKMP----FEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~----~~~~~fD~v  194 (359)
                      ...+.+|||++||+|.++..++.. +++|++||.|+.+++.|+++++.+++.+ +++|+++|+.+.-    ....+||+|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            345789999999999999998874 7899999999999999999999888765 6999999997631    234789999


Q ss_pred             Eeccc---c------ccc-CCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEA---T------CHA-PKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~---l------~~~-~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++.--   .      ..+ .+...+++.+.++|+|||.+++..
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            98421   1      111 234567788899999999877653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=7.2e-12  Score=100.53  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEec
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLK--MPFEDNHFDGAYSI  197 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~v~~~  197 (359)
                      +..+.+|||+|||+|.++.+.+.. +++++++|.|+.+++.++++++..++..++....+|...  ......+||+|++.
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            356789999999999999988775 689999999999999999999998887655554444321  12345789999986


Q ss_pred             ccccccCCHHHHHHHH--HhccCCCCEEEEE
Q 018194          198 EATCHAPKLEDVYAEV--FRVLKPGSLYVSY  226 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~--~~~LkpgG~l~~~  226 (359)
                      -... . +....+.++  ..+|+|||.+++.
T Consensus       118 PPY~-~-~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         118 PPYA-M-DLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCTT-S-CTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             cccc-c-CHHHHHHHHHHcCCcCCCeEEEEE
Confidence            4322 1 333344444  3579999988763

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-11  Score=101.43  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-  184 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-  184 (359)
                      ..+...+++..   ...+|||||||+|..+..+++.  .+.+|+.+|+++...+.|++.+...|+.++++++.+|+.+. 
T Consensus        48 g~lL~~L~~~~---~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l  124 (219)
T d2avda1          48 AQLLANLARLI---QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHcc---CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc
Confidence            34444444443   4679999999999999999984  35799999999999999999999999999999999998662 


Q ss_pred             C-----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          185 P-----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       185 ~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +     ...++||+|+...-   -.+....+..+.++|+|||.+++-+.
T Consensus       125 ~~~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             hhhhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            1     23578999998642   23567888999999999999998543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.19  E-value=1.4e-11  Score=108.42  Aligned_cols=108  Identities=11%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKM----PFEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~----~~~~~~fD~v  194 (359)
                      ..+|.+|||++||+|.++..++.....+|+++|+|+.+++.++++++..++. .+++++++|+.+.    .....+||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            3468999999999999998887743348999999999999999999988884 5799999999763    1234689999


Q ss_pred             Eecccc---------cccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          195 YSIEAT---------CHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       195 ~~~~~l---------~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++.-.-         ....+...+++.+.++|+|||.+++..
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            985321         111246678999999999999999853

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=8.3e-10  Score=90.44  Aligned_cols=99  Identities=21%  Similarity=0.270  Sum_probs=87.7

Q ss_pred             CCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|+|+|+|.|..+..+|- .|+.+++.+|.+..-+...++.....++. |+++++.++++.. ...+||+|+++.+ 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~-~~~~fD~V~sRA~-  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRAF-  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc-cccccceehhhhh-
Confidence            457999999999999999987 57899999999999999999999998885 7999999999864 3568999999874 


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                         .+...++.-+...+++||.+++.
T Consensus       142 ---~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         142 ---ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ---cCHHHHHHHHHHhcCCCcEEEEE
Confidence               57888999999999999999984

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=1.7e-10  Score=94.78  Aligned_cols=82  Identities=12%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             HhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 018194          116 DLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAY  195 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~  195 (359)
                      .....-.|.+|||+|||+|.++..++.....+|+|+|+|+.+++.+++++...+.  +.++..+|+..+   .++||+|+
T Consensus        40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi  114 (201)
T d1wy7a1          40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVI  114 (201)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEE
T ss_pred             HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEE
Confidence            3344446889999999999999988876446999999999999999999887764  578999998775   46899999


Q ss_pred             ecccccc
Q 018194          196 SIEATCH  202 (359)
Q Consensus       196 ~~~~l~~  202 (359)
                      ++-....
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            9876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.14  E-value=1.5e-10  Score=94.25  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      -.|.+|||+|||+|.++..++.....+|+|+|+++.+++.|+++.      .+++++++|+.+++   ++||+|+++-.+
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NPPf  117 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNPPF  117 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCccc
Confidence            368999999999999998877764468999999999999998874      36899999998763   789999998544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=1.2e-10  Score=95.18  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             CCCCEEEEECCCCChHHHH----HHhh-----cCCEEEEEeCCHHHHHHHHHHH------------------HHcCC---
Q 018194          121 KAGDRILDVGCGVGGPMRA----IAAH-----SRANVVGITINEYQVNRARLHN------------------KKAGL---  170 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~----l~~~-----~~~~v~g~D~s~~~~~~a~~~~------------------~~~~~---  170 (359)
                      .+..+|+++|||+|.-...    +.+.     ...+|+|+|+|+..++.|++..                  .+.+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456999999999984333    3322     1248999999999999997421                  11110   


Q ss_pred             ---------CCCeEEEEcCCCCCC-CCCCccceEEecccccccCC--HHHHHHHHHhccCCCCEEEE
Q 018194          171 ---------DSLCEVVCGNFLKMP-FEDNHFDGAYSIEATCHAPK--LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       171 ---------~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~  225 (359)
                               ...+.+...+..... .+.+.||+|+|.++|.++++  ..++++++++.|+|||+|++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                     023456666665532 34578999999999999975  47899999999999999987

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.10  E-value=7.1e-11  Score=95.52  Aligned_cols=116  Identities=15%  Similarity=0.075  Sum_probs=90.1

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-
Q 018194          109 LHEEMAVDLID-VKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-P-  185 (359)
Q Consensus       109 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-  185 (359)
                      +..+.+...+. ...+.+|||++||+|.++.+.+.+...+|+++|.++.+++.+++++...+...+++++++|+... . 
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~  106 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ  106 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhh
Confidence            34444445443 34689999999999999999888744589999999999999999999888888899999998753 1 


Q ss_pred             --CCCCccceEEecccccccCCHHHHHHHHHh--ccCCCCEEEE
Q 018194          186 --FEDNHFDGAYSIEATCHAPKLEDVYAEVFR--VLKPGSLYVS  225 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~  225 (359)
                        ....+||+|++.-.. ...+....+..+..  +|+|+|.+++
T Consensus       107 ~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1         107 FYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             HHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence              234689999986542 23456777887754  6999998875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.06  E-value=1.5e-10  Score=96.50  Aligned_cols=113  Identities=17%  Similarity=0.178  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-  184 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-  184 (359)
                      ..+...+++..   ...+|||||+++|..+..+++.  .+++|+.+|.+++..+.|++.+++.|+.++++++.+|+.+. 
T Consensus        48 g~~L~~L~~~~---~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L  124 (227)
T d1susa1          48 GQFLSMLLKLI---NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHHHHHH---TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHhc---CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH
Confidence            34444455544   4579999999999999999974  35799999999999999999999999999999999999763 


Q ss_pred             C------CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          185 P------FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       185 ~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +      ...++||+|+...-   -.+....++.+.++|+|||.+++-
T Consensus       125 ~~l~~~~~~~~~fD~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         125 DEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHHHCGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHhccccCCceeEEEeccc---hhhhHHHHHHHHhhcCCCcEEEEc
Confidence            2      12468999998642   245778899999999999999984

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=2.8e-10  Score=92.15  Aligned_cols=102  Identities=13%  Similarity=0.012  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l  200 (359)
                      .+.+|||++||+|.++.+.+.+...+|+.+|.++..++.++++++..+. .++.++..|+.+. .....+||+|++.-..
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCcc
Confidence            5789999999999999998886545999999999999999999988765 4789999998763 3346789999997543


Q ss_pred             cccCCHHHHHHHHHh--ccCCCCEEEE
Q 018194          201 CHAPKLEDVYAEVFR--VLKPGSLYVS  225 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~--~LkpgG~l~~  225 (359)
                      . ......++..+.+  +|+|+|.+++
T Consensus       122 ~-~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         122 R-RGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             S-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             c-cchHHHHHHHHHHCCCCCCCeEEEE
Confidence            2 2346677777765  6999998887

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.96  E-value=1.5e-09  Score=90.99  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++++|||||||+|.+|..|++. +.+|+++|+++.+++..+++...   .+|++++++|+.+.+++.
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhccccc
Confidence            45677888889999999999999999999999986 57999999999999999987654   358999999999987765


Q ss_pred             CccceEEec
Q 018194          189 NHFDGAYSI  197 (359)
Q Consensus       189 ~~fD~v~~~  197 (359)
                      .....|+++
T Consensus        84 ~~~~~vv~N   92 (235)
T d1qama_          84 NQSYKIFGN   92 (235)
T ss_dssp             SCCCEEEEE
T ss_pred             cccceeeee
Confidence            444445544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=2.3e-09  Score=89.49  Aligned_cols=131  Identities=14%  Similarity=0.124  Sum_probs=103.1

Q ss_pred             CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCccceEEe
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF---EDNHFDGAYS  196 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~  196 (359)
                      ..+.+|+|||+|.|..+..++- .++.+++.+|.+..-+...+......++. |+.+++..++++..   ..++||+|++
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccccccccceEEEE
Confidence            4567999999999999999986 57899999999999999999999999986 78999988876532   2368999999


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                      +.+    .....++.-+...+++||.+++.-   ...+.      .                ..++....+...|++...
T Consensus       148 RAv----a~l~~ll~~~~~~l~~~g~~i~~K---G~~~~------~----------------El~~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         148 RAV----ARLSVLSELCLPLVKKNGLFVALK---AASAE------E----------------ELNAGKKAITTLGGELEN  198 (239)
T ss_dssp             ECC----SCHHHHHHHHGGGEEEEEEEEEEE---CC-CH------H----------------HHHHHHHHHHHTTEEEEE
T ss_pred             hhh----hCHHHHHHHHhhhcccCCEEEEEC---CCChH------H----------------HHHHHHHHHHHcCCEEEE
Confidence            864    578899999999999999999842   11100      0                013455677888998887


Q ss_pred             EEecC
Q 018194          277 EKDLA  281 (359)
Q Consensus       277 ~~~~~  281 (359)
                      +..+.
T Consensus       199 v~~~~  203 (239)
T d1xdza_         199 IHSFK  203 (239)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76664

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=8e-09  Score=91.48  Aligned_cols=118  Identities=14%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 018194          107 TRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH------SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGN  180 (359)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d  180 (359)
                      ...+...+...+...++.+|||.|||+|.++..+..+      ...+++|+|+++.++..|+......+.  +..+.++|
T Consensus       102 ~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d  179 (328)
T d2f8la1         102 GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQD  179 (328)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESC
T ss_pred             HHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhccc
Confidence            3444455556667778889999999999998887642      235899999999999999988777664  46777888


Q ss_pred             CCCCCCCCCccceEEecccccccCC------------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          181 FLKMPFEDNHFDGAYSIEATCHAPK------------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       181 ~~~~~~~~~~fD~v~~~~~l~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .... .+..+||+|+++-.......                  ...++..+.+.|+|||+++++.
T Consensus       180 ~~~~-~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~  243 (328)
T d2f8la1         180 GLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  243 (328)
T ss_dssp             TTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccc-cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence            7653 34578999999876533221                  2247899999999999988753

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=1.3e-09  Score=93.82  Aligned_cols=106  Identities=22%  Similarity=0.313  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc---------CCCCCeEEEEcCCCCCCCCCCcc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA---------GLDSLCEVVCGNFLKMPFEDNHF  191 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~~~~~~f  191 (359)
                      ..+.+||.||+|.|..+..+.+++..+|+++|+++.+++.|++.+...         ...++++++.+|+...--.+++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            456799999999999999998876679999999999999999876321         12468999999987642235789


Q ss_pred             ceEEecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          192 DGAYSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       192 D~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      |+|++...-..-+    .-.++++.+++.|+|||.+++.
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            9999754322111    1258999999999999998874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.1e-07  Score=85.09  Aligned_cols=129  Identities=22%  Similarity=0.299  Sum_probs=98.4

Q ss_pred             ceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194           91 SFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      .+.+++...........+.+.+.+.+.+...++.+|||+-||+|.++..|++. ..+|+|+|.++.+++.|+++++..++
T Consensus       181 ~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i  259 (358)
T d1uwva2         181 RLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL  259 (358)
T ss_dssp             EEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             EEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc
Confidence            34555555555556777888888999999889999999999999999999986 46999999999999999999998887


Q ss_pred             CCCeEEEEcCCCCCC----CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          171 DSLCEVVCGNFLKMP----FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       171 ~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      . |+.|+.+|..+..    .....+|+|+..-.=.-   ...+++.+.+. +|.-.+++
T Consensus       260 ~-n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         260 Q-NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             C-SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEE
T ss_pred             c-cceeeecchhhhhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEE
Confidence            5 8999999987632    23467899987432111   23466776664 66655555

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.83  E-value=2e-10  Score=96.97  Aligned_cols=89  Identities=15%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNH  190 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  190 (359)
                      .+.+++.+.+.++++|||||||+|.+|..|++. +.+|+++|+++.+++.+++++..   .++++++++|+.+.+++...
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhccccccce
Confidence            467888899999999999999999999999997 57999999999999888766542   35899999999998888777


Q ss_pred             cceEEecccccccC
Q 018194          191 FDGAYSIEATCHAP  204 (359)
Q Consensus       191 fD~v~~~~~l~~~~  204 (359)
                      ++.|+++.. .|+.
T Consensus        94 ~~~vv~NLP-Y~Is  106 (245)
T d1yuba_          94 RYKIVGNIP-YHLS  106 (245)
T ss_dssp             EEEEEEECC-SSSC
T ss_pred             eeeEeeeee-hhhh
Confidence            777776654 3443

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=9.1e-09  Score=82.46  Aligned_cols=112  Identities=25%  Similarity=0.334  Sum_probs=89.1

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----  185 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  185 (359)
                      .+.++..+.+.+|..++|..||.|+.+..+.+. +++|+|+|.++.+++.+++..     ..++.+++.++.++.     
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHHHHH
Confidence            345667778899999999999999999999886 579999999999999988652     357999999988753     


Q ss_pred             CCCCccceEEeccccccc--C-------CHHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 FEDNHFDGAYSIEATCHA--P-------KLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~--~-------~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ...+.+|.|+....+...  .       .....|......|+|||.+++..+
T Consensus        81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            345679999986655332  1       244578888999999999998654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=9.8e-09  Score=89.61  Aligned_cols=106  Identities=20%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcC----CCCCeEEEEcCCCCC-CCCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAG----LDSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~----~~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      +...+||.||+|.|..+..+.++ +..+|+++|+++.+++.+++.+....    -.++++++.+|+.+. .-.+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            34679999999999999999886 45699999999999999999875421    246899999999873 2235689999


Q ss_pred             Eeccccccc----C---CHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHA----P---KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~----~---~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++...=.+.    +   --.++++.+++.|+|||.+++.
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            965421111    1   1357999999999999998873

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.71  E-value=2.9e-08  Score=79.96  Aligned_cols=120  Identities=17%  Similarity=0.112  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhcCC-CCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCC
Q 018194          105 DATRLHEEMAVDLIDV-KAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS-LCEVVCGNFL  182 (359)
Q Consensus       105 ~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~i~~~~~d~~  182 (359)
                      ....+..+.+...+.. -.+.+|||+.||||.++.+.+.+...+|+.||.+...++..+++++..+... ...+...|..
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~  104 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL  104 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccc
Confidence            3333444444444421 2577999999999999999998755699999999999999999999887654 4566666644


Q ss_pred             C---CCCCCCccceEEecccccccCCHHHHHHHHHh--ccCCCCEEEE
Q 018194          183 K---MPFEDNHFDGAYSIEATCHAPKLEDVYAEVFR--VLKPGSLYVS  225 (359)
Q Consensus       183 ~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~  225 (359)
                      +   .......||+|++.-... ......++..+..  +|+++|.+++
T Consensus       105 ~~l~~~~~~~~fDlIFlDPPY~-~~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         105 DFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             HHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccccccCCcccEEEechhHh-hhhHHHHHHHHHHhCCcCCCcEEEE
Confidence            3   123345799998865433 2346677777754  7999998887

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=9.9e-08  Score=83.30  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=102.4

Q ss_pred             HHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC
Q 018194          112 EMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDN  189 (359)
Q Consensus       112 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  189 (359)
                      ......+...+|.+|||++||.|.=+..++..  ....++++|+++..++..+++..+.+.. ++.....|....+....
T Consensus       106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~~~~~~  184 (313)
T d1ixka_         106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNV  184 (313)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCC
T ss_pred             cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-ccccccccccccccccc
Confidence            33455667889999999999999988888764  3468999999999999999999999874 67888888777665668


Q ss_pred             ccceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhh
Q 018194          190 HFDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQG  247 (359)
Q Consensus       190 ~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  247 (359)
                      .||.|++.-      ++..-|+                ..++|.+..+.|||||+++....+...   .           
T Consensus       185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~---e-----------  250 (313)
T d1ixka_         185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP---E-----------  250 (313)
T ss_dssp             CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG---G-----------
T ss_pred             cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh---H-----------
Confidence            899998632      1211111                246889999999999998875433221   1           


Q ss_pred             hhcCCCCCCCCCHHHHHHHHHhCCCeEEE
Q 018194          248 IERGDALPGLRSYAEITEIAKRVGFEVVK  276 (359)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~aGF~~i~  276 (359)
                                .....+...|++.+|+.+.
T Consensus       251 ----------ENE~VV~~~L~~~~~~~~~  269 (313)
T d1ixka_         251 ----------ENEFVIQWALDNFDVELLP  269 (313)
T ss_dssp             ----------GTHHHHHHHHHHSSEEEEC
T ss_pred             ----------hHHHHHHHHHhcCCCEEee
Confidence                      1234566777888877664

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.5e-08  Score=82.15  Aligned_cols=87  Identities=21%  Similarity=0.271  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFED  188 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  188 (359)
                      ...+.+++.+.+.++..|||||+|+|.+|..|++. +.+|+++++++.+++..++.+.......+++++.+|+...+++ 
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~-   85 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-   85 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence            45567788888889999999999999999999987 5799999999999999999887665567899999999987654 


Q ss_pred             CccceEEecc
Q 018194          189 NHFDGAYSIE  198 (359)
Q Consensus       189 ~~fD~v~~~~  198 (359)
                       .++.|+++.
T Consensus        86 -~~~~vV~NL   94 (278)
T d1zq9a1          86 -FFDTCVANL   94 (278)
T ss_dssp             -CCSEEEEEC
T ss_pred             -hhhhhhcch
Confidence             345666654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=2.1e-08  Score=86.39  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=81.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEe
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKM-PFEDNHFDGAYS  196 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~-~~~~~~fD~v~~  196 (359)
                      ...+||-||+|.|..++.+.+++ ..+|+++|+++.+++.+++.+....   -.++++++.+|+... .-..++||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            45799999999999999999864 4689999999999999998765421   246899999998763 234578999997


Q ss_pred             cccccc-cC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          197 IEATCH-AP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       197 ~~~l~~-~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ...-.. .+    --.++++.+++.|+|||.+++.
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            543221 11    1368999999999999999874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.61  E-value=5.4e-08  Score=83.20  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC-CCCCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKA---GLDSLCEVVCGNFLKM-PFEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~-~~~~~~fD~v~  195 (359)
                      ....+||-||.|.|..++.+.++++ .+|+.+|+++..++.|++.+...   --.++++++.+|+... .-..++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            3457999999999999999998644 69999999999999999987532   1246899999998763 23457899999


Q ss_pred             ecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...-..-+    --.++++.+.+.|+|||.++..
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            764321111    1468999999999999999863

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=4.8e-08  Score=84.17  Aligned_cols=106  Identities=19%  Similarity=0.297  Sum_probs=82.4

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCCC--CCCCccceE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKA---GLDSLCEVVCGNFLKMP--FEDNHFDGA  194 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v  194 (359)
                      +...+||-||.|.|..++++.++++ .+|+++|+++.+++.+++.+...   .-.++++++.+|+...-  .++++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            3457999999999999999999744 58999999999999999976432   12468999999976532  345689999


Q ss_pred             EecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++...-..-+    --.++++.+++.|+|||.+++.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            9754321111    1368999999999999999974

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.59  E-value=1e-07  Score=79.08  Aligned_cols=107  Identities=21%  Similarity=0.321  Sum_probs=80.2

Q ss_pred             HHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 018194          110 HEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE  187 (359)
Q Consensus       110 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~  187 (359)
                      ..+.++..+...++.+|||.|||+|.++..+.+.  ....++|+|+++..+..          ..+..+.++|..... .
T Consensus         7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~-~   75 (223)
T d2ih2a1           7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWE-P   75 (223)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCC-C
T ss_pred             HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhccc-c
Confidence            4567788888889999999999999998888763  23689999999876433          234577888887654 3


Q ss_pred             CCccceEEecccccccC----------------------------C-HHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP----------------------------K-LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~----------------------------~-~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...||+|+++.......                            + ...++..+.+.|+|||++.++.
T Consensus        76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~  144 (223)
T d2ih2a1          76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  144 (223)
T ss_dssp             SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence            47899999886543211                            0 2356788899999999988863

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.9e-08  Score=84.46  Aligned_cols=107  Identities=18%  Similarity=0.186  Sum_probs=81.4

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC-CCCCCccceE
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKA---GLDSLCEVVCGNFLKM-PFEDNHFDGA  194 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~i~~~~~d~~~~-~~~~~~fD~v  194 (359)
                      .+...+||-||.|.|..++.+.+++ ..+|+++|+++.+++.|++.+...   --.++++++.+|+... .-..++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            3456799999999999999999864 469999999999999999987531   1246899999998763 2235689999


Q ss_pred             Eeccccccc-C---CHHHHHHHHHhccCCCCEEEEE
Q 018194          195 YSIEATCHA-P---KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       195 ~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ++...-..- +   --.++++.+++.|+|||.+++.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            986421111 1   1347899999999999999874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.58  E-value=2.4e-08  Score=86.42  Aligned_cols=106  Identities=21%  Similarity=0.273  Sum_probs=79.3

Q ss_pred             CCCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCCC-CCCCccceEE
Q 018194          121 KAGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAG---LDSLCEVVCGNFLKMP-FEDNHFDGAY  195 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~  195 (359)
                      +...+||-||.|.|..++++.++.+ .+|+++|+++.+++.+++.+....   -.++++++.+|+...- -..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            3457999999999999999999654 599999999999999999864321   1368999999987632 2357899999


Q ss_pred             ecccccccC----CHHHHHHHHHhccCCCCEEEEE
Q 018194          196 SIEATCHAP----KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       196 ~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +...-..-+    --.++++.+++.|+|||.++..
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            864322111    1357899999999999999874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.39  E-value=5.5e-07  Score=82.22  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 018194          108 RLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--------------RANVVGITINEYQVNRARLHNKKAGLD-S  172 (359)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~g~D~s~~~~~~a~~~~~~~~~~-~  172 (359)
                      ....+.++..+...++.+|+|.+||+|.+...+.++.              ...++|+|+++.+...|+.+..-.+.. .
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~  227 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  227 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence            3456777888888889999999999999988776531              135999999999999999887766654 2


Q ss_pred             CeEEEEcCCCCCCCCCCccceEEecccccccC-----------------CHHHHHHHHHhccCCCCEEEEEE
Q 018194          173 LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAP-----------------KLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       173 ~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-----------------~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +..+...|....+ +...||+|+++-.+....                 ....++..+.+.|+|||++.++-
T Consensus       228 ~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~  298 (425)
T d2okca1         228 RSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  298 (425)
T ss_dssp             CCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence            4567788877643 457899999987663221                 02358999999999999988763

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=98.37  E-value=1.6e-05  Score=69.69  Aligned_cols=157  Identities=15%  Similarity=0.051  Sum_probs=91.5

Q ss_pred             CEEEEECCCCChHHHHHHh-----------------hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCC--eEEEEcCCCC
Q 018194          124 DRILDVGCGVGGPMRAIAA-----------------HSRANVVGITINEYQVNRARLHNKKA-GLDSL--CEVVCGNFLK  183 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~-----------------~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~--i~~~~~d~~~  183 (359)
                      .+|.|+||.+|..+..+..                 .+..+|..-|+-.+=....-+..... ...++  +.-+.+.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            6799999999987743221                 12357777776433222211111111 11111  3335566666


Q ss_pred             CCCCCCccceEEecccccccC---------------------------------CHHHHHHHHHhccCCCCEEEEEEeee
Q 018194          184 MPFEDNHFDGAYSIEATCHAP---------------------------------KLEDVYAEVFRVLKPGSLYVSYEWVT  230 (359)
Q Consensus       184 ~~~~~~~fD~v~~~~~l~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~  230 (359)
                      --||.++.|++++..++||+.                                 |+..+|+.=.+-|+|||++++.-...
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence            558999999999999999863                                 12357777778899999999976665


Q ss_pred             Cccccc--C----chHHHHHHhhhhcCC----------CCC-CCCCHHHHHHHHHhCC-CeEEEEEec
Q 018194          231 TDKYEA--E----NKEHVDIIQGIERGD----------ALP-GLRSYAEITEIAKRVG-FEVVKEKDL  280 (359)
Q Consensus       231 ~~~~~~--~----~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~l~~aG-F~~i~~~~~  280 (359)
                      ...-..  .    ...+...+......+          .+| ...+.+++++.+++.| |++.+.+.+
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~  280 (359)
T d1m6ex_         213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS  280 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEee
Confidence            322111  1    112222222221111          122 2568899999998877 777766544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=2.2e-07  Score=78.18  Aligned_cols=74  Identities=12%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF  186 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~  186 (359)
                      ...+.+++.+.+.+++.|||||||+|.+|..|++. +.+|+++|+++.+++..+++...   .++++++.+|+.+.++
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhcc
Confidence            34567788888889999999999999999999986 57999999999999998775432   3589999999998753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=7.8e-07  Score=76.41  Aligned_cols=115  Identities=19%  Similarity=0.260  Sum_probs=85.1

Q ss_pred             HHHHhcCCCCCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCc
Q 018194          113 MAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-FEDNH  190 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  190 (359)
                      .....+...++.+|||+++|.|.=+..+++. .+..|+++|+++..++..+++....|.. ++.....|..... ...+.
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~  171 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQ  171 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCC
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhccccc
Confidence            3455678889999999999999988888874 3468999999999999999999999875 4444444443221 23468


Q ss_pred             cceEEecc------cccccCC----------------HHHHHHHHHhccCCCCEEEEEEe
Q 018194          191 FDGAYSIE------ATCHAPK----------------LEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       191 fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ||.|++.-      ++..-|+                ..++|.++.+.|||||+++....
T Consensus       172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            99998632      2222222                24688999999999999987643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=2.2e-06  Score=68.17  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             CCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCC
Q 018194          120 VKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------FEDN  189 (359)
Q Consensus       120 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~  189 (359)
                      ++++.+||||||+.|.|+..+.+.  ....++++|+.+.-           . -+++.++++|+.+..        ....
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~-i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------P-IVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------C-CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------c-cCCceEeecccccchhhhhhhhhccCc
Confidence            468899999999999999988874  34699999987621           1 246899999997632        2356


Q ss_pred             ccceEEecccccccCC-----------HHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPK-----------LEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|++..+...-.+           ....+.-+.++|||||.+++=
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            8999999876544321           235667778999999999973

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.5e-06  Score=72.56  Aligned_cols=83  Identities=16%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---C
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAH--SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE---D  188 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~  188 (359)
                      ....+...+|.+|||++||.|.-+..++..  ....|+++|+++..++..+++..+.|+. ++.+...|...+...   .
T Consensus        86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~~~  164 (293)
T d2b9ea1          86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRY  164 (293)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGG
T ss_pred             cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccccc
Confidence            445567889999999999999988888874  3469999999999999999999999875 789999998775422   2


Q ss_pred             CccceEEec
Q 018194          189 NHFDGAYSI  197 (359)
Q Consensus       189 ~~fD~v~~~  197 (359)
                      +.||.|++.
T Consensus       165 ~~fD~VL~D  173 (293)
T d2b9ea1         165 HEVHYILLD  173 (293)
T ss_dssp             TTEEEEEEC
T ss_pred             ceeeEEeec
Confidence            579999864

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.27  E-value=6.4e-07  Score=74.28  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             CCEEEEECCCCChHHHHHHhh-----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccce
Q 018194          123 GDRILDVGCGVGGPMRAIAAH-----SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDG  193 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~  193 (359)
                      +.+|||||++.|..+..++..     ..++|+++|+++........      ...+++++++|..+..    +....+|+
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~dl  154 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPL  154 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCCCE
Confidence            469999999999887776642     35799999998765432211      1357999999987643    33456898


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+.-.. |+......-+ +...+|+|||++++-|
T Consensus       155 IfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         155 IFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             EEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             EEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence            887554 3322222223 4568999999999854

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4.9e-06  Score=77.76  Aligned_cols=119  Identities=11%  Similarity=0.045  Sum_probs=83.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc-------------------CCEEEEEeCCHHHHHHHHHHHHHcC
Q 018194          109 LHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-------------------RANVVGITINEYQVNRARLHNKKAG  169 (359)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~g~D~s~~~~~~a~~~~~~~~  169 (359)
                      ...+.++..+...++.+|+|.+||+|.+.....++.                   ...++|+|+++.+...|+...--.+
T Consensus       151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            345677778888889999999999999987765421                   1268999999999999988776555


Q ss_pred             CCCC----eEEEEcCCCCCC-CCCCccceEEecccccccC-------------C-HHHHHHHHHhccCCCCEEEEEE
Q 018194          170 LDSL----CEVVCGNFLKMP-FEDNHFDGAYSIEATCHAP-------------K-LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       170 ~~~~----i~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~-------------~-~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ...+    -.+...+....+ .....||+|+++-.+..-.             + ...++..+.+.|+|||++.++-
T Consensus       231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            4322    123444443321 2346799999987553211             1 2358999999999999988763

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=6.6e-06  Score=73.01  Aligned_cols=102  Identities=10%  Similarity=-0.112  Sum_probs=78.9

Q ss_pred             CCCEEEEECCCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------CeEEEEcCCCCCC-
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDS--------------LCEVVCGNFLKMP-  185 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~--------------~i~~~~~d~~~~~-  185 (359)
                      .+.+|||..||+|..+...+.. ...+|+..|+|+..++.++++++..+...              ++.+.+.|+.... 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            4679999999999999987764 33599999999999999999998776532              3555666654322 


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....||+|...-    +..+..+|..+.+.++.||.+.+..
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence            1245799987753    3467889999999999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.95  E-value=0.00011  Score=57.53  Aligned_cols=100  Identities=14%  Similarity=0.046  Sum_probs=70.7

Q ss_pred             HHhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 018194          115 VDLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------  185 (359)
                      ++..+++++.+||-+||| .|..+..+++..|++|+++|.++..++.+++...      ...+ ..+-....        
T Consensus        19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga------~~~~-~~~~~~~~~~~~~~~~   91 (170)
T d1e3ja2          19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------DVTL-VVDPAKEEESSIIERI   91 (170)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------SEEE-ECCTTTSCHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC------cEEE-eccccccccchhhhhh
Confidence            345678899999999998 4677788888788999999999999998877421      1222 22221111        


Q ss_pred             --CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 --FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                        .....+|+|+-.-      .-...+..+.++|+|||+++++-
T Consensus        92 ~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          92 RSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             HHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             hcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEe
Confidence              0124578887533      23467888899999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=7e-06  Score=64.58  Aligned_cols=101  Identities=17%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             HhcCCCCCCEEEEECCC-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC-CCCCCccc
Q 018194          116 DLIDVKAGDRILDVGCG-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG-NFLKM-PFEDNHFD  192 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~-~~~~~~fD  192 (359)
                      ....+++|++||-+|+| .|..+..+++..|++|+++|.|++.++.+++.    |-.   .++.. +-.+. ....+.||
T Consensus        21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d   93 (168)
T d1piwa2          21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFD   93 (168)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEE
T ss_pred             HHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccc
Confidence            34678899999999998 57788888887899999999999999888765    321   22322 11111 11235799


Q ss_pred             eEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          193 GAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       193 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +|+......+-    ..+....++|+|||+++++-
T Consensus        94 ~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence            88764332221    12346789999999999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.83  E-value=0.00015  Score=59.28  Aligned_cols=108  Identities=18%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCEEEEECCCCChHHHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccc
Q 018194          114 AVDLIDVKAGDRILDVGCGVGGPMRAIAAHS-RANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFD  192 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD  192 (359)
                      +.+...+.++.+|+|+|||.|.|+..++... ...|.|+|+--...+. .......+. +-+++...+-.. ..+....|
T Consensus        58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~-~l~~~~~D  134 (257)
T d2p41a1          58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVF-FIPPERCD  134 (257)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTT-TSCCCCCS
T ss_pred             HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHH-hcCCCcCC
Confidence            4444567788899999999999999998753 2578888873221000 000000010 123333322211 23467899


Q ss_pred             eEEecccccccCCH-------HHHHHHHHhccCCCCEEEE
Q 018194          193 GAYSIEATCHAPKL-------EDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       193 ~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~~  225 (359)
                      +|+|..+-. .+++       ..+|.-+.+.|+|||-|++
T Consensus       135 ~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         135 TLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            999986533 3332       2567777899999998876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.70  E-value=0.00017  Score=56.60  Aligned_cols=102  Identities=14%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             HHHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----
Q 018194          113 MAVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----  185 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  185 (359)
                      .+.+..+++++.+||=+|||. |..+..+++..++ .|+++|.++..++.+++.    |.   .+++..+-.+..     
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHH
Confidence            345667889999999999985 4466777775454 778889999999888765    32   234433322211     


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.++.+|+|+-.-      -....++.+.++++|+|+++++-
T Consensus        92 ~t~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          92 ITDGGVNFALEST------GSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HTTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HcCCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEe
Confidence            2245789887543      23467788999999999998853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=9.7e-05  Score=58.55  Aligned_cols=101  Identities=19%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|.+||-+|||. |..+..+++..|+ +|+++|.+++.++.+++.    |-.   .++...-.+..      
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~i   92 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRKAI   92 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHHHH
Confidence            34455778999999999984 7788888887786 899999999999988764    211   22221111100      


Q ss_pred             ---CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 ---FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                         .....+|+|+-.-.      -...++...++|+|||+++++.
T Consensus        93 ~~~~~~~g~Dvvid~vG------~~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          93 MDITHGRGADFILEATG------DSRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHhhCCCCceEEeecCC------chhHHHHHHHHhcCCCEEEEEe
Confidence               12345898875432      1345788889999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00037  Score=54.41  Aligned_cols=101  Identities=17%  Similarity=0.082  Sum_probs=69.9

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------  185 (359)
                      ++..+++++.+||=+|||. |..+..+++..++ +|+++|.++..++.|++.    |-.   .+...+-.+..       
T Consensus        19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVE   91 (171)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---cccccccccccccccccc
Confidence            3456788999999999986 5566777776676 899999999999988764    211   22222222210       


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                       -....+|+|+-.-.      -...++...+.++|||++++.-.
T Consensus        92 ~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          92 GQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEec
Confidence             01246788876432      24578899999999999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=6.9e-05  Score=58.43  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDN  189 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~  189 (359)
                      +...++++.+||=+|+|. |..+..+++..|++|+++|.++..++.+++.    |-   ..++..+-.+..     ...+
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~g   93 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GA---SLTVNARQEDPVEAIQRDIGG   93 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHHSS
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cc---cccccccchhHHHHHHHhhcC
Confidence            446788999999999985 6677788887789999999999999888754    31   133332222210     1122


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .+|.|.+..       -...+....+.|+|||+++++-
T Consensus        94 ~~~~i~~~~-------~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          94 AHGVLVTAV-------SNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEEEEECCS-------CHHHHHHHHTTEEEEEEEEECC
T ss_pred             Ccccccccc-------cchHHHHHHHHhcCCcEEEEEE
Confidence            234444322       2356788999999999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.54  E-value=9.2e-05  Score=58.26  Aligned_cols=101  Identities=17%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------C
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------F  186 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~  186 (359)
                      ++...+++|.+||=+|||. |..+..+++..++ +|+++|.++..++.+++.    |-   .+++...-.+..      .
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEECGGGSCHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccccccchhHHHHHHHHh
Confidence            4556889999999999986 7788888887775 799999999999888764    21   133322211110      1


Q ss_pred             CCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          187 EDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       187 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      ....+|+|+-.-.      -...+++..++++|+|+++++-.
T Consensus        93 ~g~G~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          93 NGKGVDRVIMAGG------GSETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred             hccCcceEEEccC------CHHHHHHHHHHHhcCCEEEEEee
Confidence            2345898876432      12456788899999999998643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.51  E-value=0.00011  Score=60.69  Aligned_cols=91  Identities=13%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             HHHHHhcCCCCC--CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcC--------CCCCeEEEEcCC
Q 018194          112 EMAVDLIDVKAG--DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAG--------LDSLCEVVCGNF  181 (359)
Q Consensus       112 ~~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--------~~~~i~~~~~d~  181 (359)
                      +.+.+.+.++++  .+|||+-||.|..+..++.. |++|+++|-++.+....+.......        ...+++++++|.
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            456677766655  38999999999999999985 7899999999987655554333221        113789999997


Q ss_pred             CCC-CCCCCccceEEeccccccc
Q 018194          182 LKM-PFEDNHFDGAYSIEATCHA  203 (359)
Q Consensus       182 ~~~-~~~~~~fD~v~~~~~l~~~  203 (359)
                      .+. .-....||+|+.--++.+-
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCccc
Confidence            663 2234679999987776543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.50  E-value=0.00015  Score=58.17  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             HHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 018194          115 VDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-------  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------  185 (359)
                      ++...+++|.+||-+|||. |..+..+++..+ .+|+++|.++..++.|++.    |    ..... +..+.+       
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~~~i~~   88 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLHEQIAA   88 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHHHHHHH
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHHHHHHH
Confidence            3457889999999999997 557777777545 4999999999999988765    2    12222 211111       


Q ss_pred             -CCCCccceEEeccccc------cc---CCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          186 -FEDNHFDGAYSIEATC------HA---PKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~------~~---~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                       .....+|+++-.-...      +.   ......++.+.++++|||++.++-.
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence             1234688887543211      11   1245789999999999999998643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.46  E-value=0.00041  Score=54.37  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=71.9

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|++||=+|||. |..+..+++..++ .|+.+|.++..++.+++.    |-.   .++...-.+..      
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT---DCLNPRELDKPVQDVIT   92 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC---cccCCccchhhhhhhHh
Confidence            45567889999999999997 7888888887676 799999999988888764    221   23222111111      


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEEEe
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSYEW  228 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  228 (359)
                       ...+.+|+|+-.-      -....+.+..+.++|| |++++.-+
T Consensus        93 ~~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          93 ELTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence             1235688886543      2356789999999996 99988643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00026  Score=61.27  Aligned_cols=71  Identities=11%  Similarity=-0.006  Sum_probs=55.0

Q ss_pred             HHHHHHHhcCCC------CCCEEEEECCCCChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 018194          110 HEEMAVDLIDVK------AGDRILDVGCGVGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL  182 (359)
Q Consensus       110 ~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~  182 (359)
                      ..+.+++.+.+.      .+..|||||+|.|.+|..|.+..+ .+|+++|+++..++..++...    .+++.++++|+.
T Consensus        25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l  100 (322)
T d1i4wa_          25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPY  100 (322)
T ss_dssp             HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTT
T ss_pred             HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchh
Confidence            344555554432      467899999999999999987533 489999999999999887754    257899999987


Q ss_pred             CC
Q 018194          183 KM  184 (359)
Q Consensus       183 ~~  184 (359)
                      .+
T Consensus       101 ~~  102 (322)
T d1i4wa_         101 DW  102 (322)
T ss_dssp             CH
T ss_pred             hc
Confidence            53

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00024  Score=55.68  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|.+||-.|+  |.|..+..+++..|++|++++.+++..+.+++.    |..   .++  |..+..      
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~---~vi--~~~~~~~~~~i~   90 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----GAH---EVF--NHREVNYIDKIK   90 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEE--ETTSTTHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc----Ccc---ccc--ccccccHHHHhh
Confidence            445567889999999996  356788888888899999999999887777653    322   222  222211      


Q ss_pred             --CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 --FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        .....+|+|+....       ...++...++|+|+|+++.+
T Consensus        91 ~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          91 KYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             hhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence              13456999887432       34678889999999999985

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00024  Score=55.39  Aligned_cols=99  Identities=22%  Similarity=0.158  Sum_probs=68.6

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccce
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNHFDG  193 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~  193 (359)
                      +..++++|++||=+|||. |.++..+++..|++++++|.+++.++.+++.    |-.   .++...-.+. ....+.+|+
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCEEE
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCCce
Confidence            457889999999999985 6788888887889999999999988877654    321   2332221111 122356998


Q ss_pred             EEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          194 AYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       194 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      ++-.-.-      ...+....++++|||+++++-
T Consensus        97 vid~~g~------~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          97 ILNTVAA------PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEECCSS------CCCHHHHHTTEEEEEEEEECC
T ss_pred             eeeeeec------chhHHHHHHHHhcCCEEEEec
Confidence            8765432      123567789999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=0.00042  Score=53.77  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             HhcCCCCCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCC
Q 018194          116 DLIDVKAGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FED  188 (359)
Q Consensus       116 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~  188 (359)
                      ....++++++||=.|||. |..+..+++..+++|+++|.+++.++.+++.    |.    +.......+..      ...
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga----~~~~~~~~~~~~~~~~~~~~   92 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GA----DLVVNPLKEDAAKFMKEKVG   92 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TC----SEEECTTTSCHHHHHHHHHS
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Cc----ceecccccchhhhhcccccC
Confidence            345788999999999986 4566677777788999999999998887663    32    22222211110      112


Q ss_pred             CccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          189 NHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      +.+|+|+...       -...+....+.|+|||++++..
T Consensus        93 ~~~~~v~~~~-------~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          93 GVHAAVVTAV-------SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             SEEEEEESSC-------CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeecC-------CHHHHHHHHHHhccCCceEecc
Confidence            3344443321       2467889999999999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.18  E-value=0.00074  Score=52.50  Aligned_cols=100  Identities=22%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             HHhcCCCCCCEEEEECCC--CChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          115 VDLIDVKAGDRILDVGCG--VGGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +....++++.+||=+||+  .|..+..+++..+ .+|+++|.+++.++.+++.    |-.   .++..+-.+..      
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI   92 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH
Confidence            345688899999999973  4556666666445 6999999999998888764    211   23333322211      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      .....||+|+-..      --...++...+.++|||+++++-
T Consensus        93 ~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          93 TESKGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTTSCEEEEEESC------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred             hhcccchhhhccc------ccchHHHhhhhhcccCCEEEEec
Confidence            1235689887643      23456677899999999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.00  E-value=0.0039  Score=48.56  Aligned_cols=102  Identities=18%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC-----
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMP-----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-----  185 (359)
                      +.+...+++|.+|+=+|||. |..+..+++..+ .+|+++|.+++.++.|++.-..       .++. .|.....     
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------~~in~~~~~~~~~~~~~   93 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------ECISPKDSTKPISEVLS   93 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------EEECccccchHHHHHHH
Confidence            45566789999999999985 456666777666 5899999999999999887331       2222 1211110     


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                       .....+|+++-...     ........+..+++++|+++++-
T Consensus        94 ~~~g~G~d~vi~~~g-----~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          94 EMTGNNVGYTFEVIG-----HLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHHTSCCCEEEECSC-----CHHHHHHHHTTSCTTTCEEEECS
T ss_pred             HhccccceEEEEeCC-----chHHHHHHHHHhhcCCeEEEEEE
Confidence             12346887765432     23333333444556669998864

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.97  E-value=0.011  Score=49.95  Aligned_cols=101  Identities=11%  Similarity=0.065  Sum_probs=73.1

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCC-C-------CCCCccce
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD--SLCEVVCGNFLKM-P-------FEDNHFDG  193 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~-~-------~~~~~fD~  193 (359)
                      ..|+.+|||.-.-...+....+.+++=+|. |.+++.-++...+.+..  .+..++..|+.+. .       +..+..-+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            467779999877666664345678888885 88888777777766543  4567788888652 1       22233446


Q ss_pred             EEecccccccC--CHHHHHHHHHhccCCCCEEEE
Q 018194          194 AYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       194 v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      +++-.++++++  +...+|+.+.+...||+.+++
T Consensus       170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~  203 (297)
T d2uyoa1         170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV  203 (297)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            77777888886  577999999999999999887

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.97  E-value=0.0039  Score=48.39  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...++||++||=.|||. |..+..+++..+ ..|+++|.++..++.+++.    |-.   .++..+-.+..      
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLI   92 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHHH
Confidence            44567889999999999983 346666777555 5899999999998888765    221   23222111111      


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                       ...+.+|+|+-.-.      ....++....++++||.+++.
T Consensus        93 ~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          93 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             HHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEE
Confidence             12356898876432      345778899999999887764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.89  E-value=0.00027  Score=54.33  Aligned_cols=98  Identities=17%  Similarity=0.083  Sum_probs=71.1

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEecccc
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEAT  200 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l  200 (359)
                      ++.+|+=||+|. |..+...|...|++|+.+|.+++.++..+.....     +++....+-..+.-.-...|+|+..-.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeeec
Confidence            457999999996 6677778888899999999999999888776543     3555554443322112357999987655


Q ss_pred             cccCCHHHHHHHHHhccCCCCEEE
Q 018194          201 CHAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       201 ~~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                      .--+-+.-+=+++.+.+|||..++
T Consensus       106 pG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         106 PGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             CCcccCeeecHHHHhhcCCCcEEE
Confidence            443344455578999999999887

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0035  Score=48.85  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCCEEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+..+++++++||=.|+|.  |..+..+++..|++|++++.|++.++.+++.    |-.   +++..+-.++.      
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~~~   92 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEI   92 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHHHH
Confidence            34456788999999997764  6688888888899999999999998888764    322   23322212211      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -....+|+|+..-.-       +.+.....+++|+|++++..
T Consensus        93 t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          93 TGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             TTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeecc
Confidence            124568887764432       24578889999999988753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.77  E-value=0.0065  Score=47.15  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             HHHhcCCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|++||=+|||. |..+..+++..+ .+|+++|.+++.++.+++.    |-.   .++...-.+..      
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~---~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GAT---ECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCc---EEEcCCCchhHHHHHHH
Confidence            45667889999999999986 446666777555 5899999999999998764    321   33322111111      


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhcc-CCCCEEEEEEe
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVL-KPGSLYVSYEW  228 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~  228 (359)
                       ...+.+|+|+-.-.      ....+.+....+ +++|.+++.-.
T Consensus        92 ~~~~~G~d~vid~~g------~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          92 EKTNGGVDYAVECAG------RIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhcCCCCcEEEEcCC------CchHHHHHHHHHHHhcCceEEEEE
Confidence             12346888775432      234555556555 45699888643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.68  E-value=0.0034  Score=48.69  Aligned_cols=96  Identities=15%  Similarity=0.063  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEECCCC-ChHHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCcc
Q 018194          119 DVKAGDRILDVGCGV-GGPMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHF  191 (359)
Q Consensus       119 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~f  191 (359)
                      .++|+.+||-+|+|. |..+..+++..+ ..|+++|.+++.++.+++.    +-   ..++..+-....     .....+
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCc
Confidence            467899999999986 456667776544 5889999999988887764    21   233333221111     123458


Q ss_pred             ceEEecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          192 DGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       192 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      |+|+-.-.      -...++...+.|+|||+++++-
T Consensus       102 d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         102 NVAMDFVG------SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEESSC------CHHHHHHGGGGEEEEEEEEECC
T ss_pred             eEEEEecC------cchHHHHHHHHHhCCCEEEEEe
Confidence            88876432      2446888999999999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.67  E-value=0.0018  Score=50.76  Aligned_cols=99  Identities=16%  Similarity=0.194  Sum_probs=68.1

Q ss_pred             HHHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...+++|++||=.|+  |.|..+..+++..++++++++-+++..+.+++.    |..   ..+...-.++.      
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~   89 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVE---YVGDSRSVDFADEILEL   89 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCS---EEEETTCSTHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccc---ccccCCccCHHHHHHHH
Confidence            445667889999999874  346788888888889999999888877776643    322   22222211211      


Q ss_pred             CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .....+|+|+..-.       ...++.+.++|+|+|+++.+
T Consensus        90 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          90 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             hCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence            13457999987543       24677888999999999874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.66  E-value=0.0052  Score=50.43  Aligned_cols=137  Identities=14%  Similarity=0.141  Sum_probs=89.3

Q ss_pred             CCceeecCCCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhh-----cC------------------
Q 018194           89 GQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAH-----SR------------------  145 (359)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~------------------  145 (359)
                      +.+.|..+..+.-...-+...... .+....-..+..++|--||+|.+.++.+-.     ||                  
T Consensus        18 g~~L~~~~~~~~~~~~Laa~il~~-al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w   96 (249)
T d1o9ga_          18 GVVLHSAPGYPAFPVRLATEIFQR-ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   96 (249)
T ss_dssp             TTSSCCBTTBCCCCHHHHHHHHHH-HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCccccCCCCCCcchHHHHHHHHH-HhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHH
Confidence            455555555555554433333333 334455566678999999999988876531     11                  


Q ss_pred             ------------------CEEEEEeCCHHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEEeccc
Q 018194          146 ------------------ANVVGITINEYQVNRA---RLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHFDGAYSIEA  199 (359)
Q Consensus       146 ------------------~~v~g~D~s~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~  199 (359)
                                        ..++|.|+++.+++.|   ++++...|+...|++.+.|+.+..     .+....++|+++--
T Consensus        97 ~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP  176 (249)
T d1o9ga_          97 ALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP  176 (249)
T ss_dssp             HTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred             HHHHHHHHHHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence                              2467899999999888   457888899989999999987643     12356789998754


Q ss_pred             ccc-cC--------CHHHHHHHHHhccCCCCEEEEE
Q 018194          200 TCH-AP--------KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       200 l~~-~~--------~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      ... +.        ...+++..+.+++.....++++
T Consensus       177 YGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         177 YGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             GGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccccccccccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence            332 11        1456666677888655555553

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.56  E-value=0.0073  Score=47.15  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=69.9

Q ss_pred             HHHHhcCCCCCCEEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----
Q 018194          113 MAVDLIDVKAGDRILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----  185 (359)
Q Consensus       113 ~~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  185 (359)
                      .+.+..++++|++||=.|++.  |..+..+++..+++|++++-+++.++.+++.    |-.   ..+..+-.+..     
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~---~vi~~~~~~~~~~~~~   92 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFD---AAFNYKTVNSLEEALK   92 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCSCHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhh---hhcccccccHHHHHHH
Confidence            345567889999999888865  4577888888899999999999887776654    321   22322222211     


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                       .....+|+|+-.-.       .+.++...++|+|||.++++
T Consensus        93 ~~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          93 KASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred             HhhcCCCceeEEecC-------chhhhhhhhhccCCCeEEee
Confidence             12356888876331       35678999999999999975

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.0006  Score=53.18  Aligned_cols=95  Identities=15%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             HHhcCCCCCCEEEEECC-C-CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCC
Q 018194          115 VDLIDVKAGDRILDVGC-G-VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDN  189 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~  189 (359)
                      +...+++++++||=.|+ | .|..+..+++..|++|++++.+++.++.+++.    |-.   ..+  |..+..   -...
T Consensus        20 l~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~l----Ga~---~~i--~~~~~~~~~~~~~   90 (171)
T d1iz0a2          20 LKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GAE---EAA--TYAEVPERAKAWG   90 (171)
T ss_dssp             HHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TCS---EEE--EGGGHHHHHHHTT
T ss_pred             HHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccc----ccc---eee--ehhhhhhhhhccc
Confidence            34567889999999885 3 36677888888899999999999888777653    322   111  222211   1235


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+|+|+-...    +    .+....+.|+|||+++.+
T Consensus        91 g~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          91 GLDLVLEVRG----K----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             SEEEEEECSC----T----THHHHHTTEEEEEEEEEC
T ss_pred             cccccccccc----h----hHHHHHHHHhcCCcEEEE
Confidence            6899876321    1    256778999999999875

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.20  E-value=0.0086  Score=46.51  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             HHHhcCCCCCCEEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCc
Q 018194          114 AVDLIDVKAGDRILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM-PFEDNH  190 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~  190 (359)
                      +...-..+++.+||=-|++.  |..+..+++..|++|+++.-|++..+.+++.    |-..-+.....+.... ....+.
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~g   98 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQR   98 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCC
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccC
Confidence            44445667789999998654  5688888988899999999998888887754    2221111111111111 123467


Q ss_pred             cceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEe
Q 018194          191 FDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEW  228 (359)
Q Consensus       191 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  228 (359)
                      +|+|+-.-.       ...+....++|+|||+++.+-.
T Consensus        99 vD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEECST-------TTTHHHHHHTEEEEEEEEECSC
T ss_pred             cCEEEEcCC-------chhHHHHHHHhCCCceEEEeec
Confidence            998876443       1246788999999999998643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.13  E-value=0.0014  Score=50.96  Aligned_cols=103  Identities=22%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             CCCEEEEECCCC-ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCCC--CC------
Q 018194          122 AGDRILDVGCGV-GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-----SLCEVVCGNFLKMP--FE------  187 (359)
Q Consensus       122 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~--~~------  187 (359)
                      ++.+||=||+|. |..+...|...|+.|+.+|.++..++..+....+.--.     ...+-..+.+..+.  +.      
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            456999999996 66777778888999999999999888877654321000     00000001111110  00      


Q ss_pred             ----CCccceEEecccccccCCHHHHHHHHHhccCCCCEEE
Q 018194          188 ----DNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       188 ----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                          -...|+|+..-.+.--+-+.-+=+++.+.+|||..++
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                1247999887665544444445578899999999887

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.10  E-value=0.028  Score=43.33  Aligned_cols=100  Identities=18%  Similarity=0.223  Sum_probs=63.8

Q ss_pred             HHHhcCCCCCCEEEEECCCCCh-HHHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC-----
Q 018194          114 AVDLIDVKAGDRILDVGCGVGG-PMRAIAAHSR-ANVVGITINEYQVNRARLHNKKAGLDSLCEVVC-GNFLKMP-----  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~-----  185 (359)
                      +.+...+++|++||=+|+|.+. ....+++..+ ..|+++|.+++.++.+++.-    ..   ..+. .+..+..     
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G----a~---~~i~~~~~~~~~~~~~~   92 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG----AT---ECVNPQDYKKPIQEVLT   92 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----CS---EEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC----Ce---eEEecCCchhHHHHHHH
Confidence            4556688999999999997543 4455555444 69999999999998887652    11   2222 1222210     


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCC-CEEEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPG-SLYVSY  226 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~  226 (359)
                       ...+.+|+|+-...      ....++.....+++| |.+++.
T Consensus        93 ~~~~~G~D~vid~~G------~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          93 EMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             HHhcCCCCEEEecCC------chhHHHHHHHHHhcCCcceEEe
Confidence             12356898877543      235566777788886 555553

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.74  E-value=0.015  Score=47.75  Aligned_cols=54  Identities=22%  Similarity=0.217  Sum_probs=43.8

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNK  166 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~  166 (359)
                      .+.+++... .+|..|||.-||+|..+....+ .+-+.+|+|++++.++.|++|..
T Consensus       202 ~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         202 IERIIRASS-NPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHC-CTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence            344444443 5789999999999998876655 57899999999999999999864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.29  E-value=0.051  Score=47.22  Aligned_cols=63  Identities=16%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhc--------CCEEEEEeCCHHHHHHHHHHHH
Q 018194          104 RDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHS--------RANVVGITINEYQVNRARLHNK  166 (359)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~g~D~s~~~~~~a~~~~~  166 (359)
                      .+....+...+...+..++..+|+|+|+|+|.++..+.+..        ..+++.+|.|+.+.+.-++...
T Consensus        61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            33444444444445555566789999999999998876531        2479999999998776666544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.28  E-value=0.015  Score=49.34  Aligned_cols=55  Identities=9%  Similarity=0.122  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKK  167 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~  167 (359)
                      .+.+++.. ..+|+.|||.-||+|..+....+ .+.+.+|+|++++.++.|++|+..
T Consensus       240 ~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         240 PEFFIRML-TEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHH-CCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHhhhhc-ccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence            34444443 35789999999999998877655 578999999999999999988654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.08  Score=43.43  Aligned_cols=80  Identities=15%  Similarity=0.055  Sum_probs=58.8

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .++.+|=.|++.|.   .+..|++ -|++|+.+|.+++.++.+.+.+...+.+.++.++++|+.+..          -.-
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~-~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQ-QGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            36788988988664   3344444 478999999999999998888887776668889999998732          012


Q ss_pred             CccceEEecccccc
Q 018194          189 NHFDGAYSIEATCH  202 (359)
Q Consensus       189 ~~fD~v~~~~~l~~  202 (359)
                      +..|+++.+....+
T Consensus        88 g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          88 SGVDICINNAGLAR  101 (257)
T ss_dssp             CCCSEEEECCCCCC
T ss_pred             CCCCEEEecccccC
Confidence            57898887765543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.14  E-value=0.021  Score=44.69  Aligned_cols=103  Identities=14%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             HHHhcCCCCCCEEEEECCCC---ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCCCC--
Q 018194          114 AVDLIDVKAGDRILDVGCGV---GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCG---NFLKMP--  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~---G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~~--  185 (359)
                      +.....++||.+||=+.+|+   |..+..+++..|++|+++--++...+...+...+.|-.   .++..   |..+..  
T Consensus        20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~~   96 (189)
T d1gu7a2          20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPT   96 (189)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHHH
Confidence            34456788998888874443   55777888878999998865555544444445555533   22322   222110  


Q ss_pred             ------CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 ------FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                            .....+|+|+-.-     .  ...+....++|+|||+++.+
T Consensus        97 v~~~~~~~g~~vdvv~D~v-----g--~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          97 IKEWIKQSGGEAKLALNCV-----G--GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHTCCEEEEEESS-----C--HHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHhhccCCceEEEECC-----C--cchhhhhhhhhcCCcEEEEE
Confidence                  0124578877432     1  33457788999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.99  E-value=0.12  Score=39.33  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             HHHhcCCCCCCEEEEECCCCCh-HHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------
Q 018194          114 AVDLIDVKAGDRILDVGCGVGG-PMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------  185 (359)
Q Consensus       114 ~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------  185 (359)
                      +.+...++++++||=+|||.+. .+..+++. .+..|+++|.+++.++.+++.    |-   .+++..+-.+..      
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----GA---d~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----GA---TDFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---CEEECGGGCSSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc----CC---cEEEcCCCcchhHHHHHH
Confidence            4456688999999999999855 44444443 446899999999999888764    32   233332211111      


Q ss_pred             -CCCCccceEEecccccccCCHHHHHHHHHhccCCCC-EEEE
Q 018194          186 -FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGS-LYVS  225 (359)
Q Consensus       186 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~  225 (359)
                       .....+|+|+-.-.      ....+.....++++|| .+++
T Consensus        93 ~~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          93 KMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             HHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhccCCcceeeeecC------CHHHHHHHHHHhhCCCcceeE
Confidence             11245788865432      2445666777766664 4444

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.90  E-value=0.036  Score=45.87  Aligned_cols=56  Identities=16%  Similarity=0.080  Sum_probs=45.2

Q ss_pred             HHHHHHhcCCCCCCEEEEECCCCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 018194          111 EEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKA  168 (359)
Q Consensus       111 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~  168 (359)
                      ...+++.. ..+|..|||.-||+|..+....+ .+-+.+|+|+++..++.|++|+...
T Consensus       197 ~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         197 IERLVRAL-SHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHH-SCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHhh-cCCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            33444443 35789999999999998877666 4789999999999999999998764

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.37  Score=40.81  Aligned_cols=155  Identities=11%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             CCCCEEEEECCCCChHHHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHc-------C-------------CCCCeEEEEc
Q 018194          121 KAGDRILDVGCGVGGPMRAIAA-HSRANVVGITINEYQVNRARLHNKKA-------G-------------LDSLCEVVCG  179 (359)
Q Consensus       121 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-------~-------------~~~~i~~~~~  179 (359)
                      .+...|+-+|||.-.....+.. .++..++=+|. |+.++.=++.+.+.       +             ..++.+.+..
T Consensus        95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~  173 (328)
T d1rjda_          95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  173 (328)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence            4556899999999877766654 44556666666 44444333332221       0             1246788888


Q ss_pred             CCCCCC---------CCCCccceEEecccccccC--CHHHHHHHHHhccCCCCEEEEEEeeeCccc-ccCchHHHHHHhh
Q 018194          180 NFLKMP---------FEDNHFDGAYSIEATCHAP--KLEDVYAEVFRVLKPGSLYVSYEWVTTDKY-EAENKEHVDIIQG  247 (359)
Q Consensus       180 d~~~~~---------~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~  247 (359)
                      |+.+..         +.....-++++-.++.+++  +..++++.+.+.. |+|.++++|....... +.....+..-+..
T Consensus       174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~~p~D~FG~~M~~nl~~  252 (328)
T d1rjda_         174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKE  252 (328)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHH
T ss_pred             CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCCCCCChHHHHHHHHHHH
Confidence            988742         2223345788888999986  4667888888777 4567777776533211 1111222211111


Q ss_pred             hhcCCCC---CCCCCHHHHHHHHHhCCCeEEEEEec
Q 018194          248 IERGDAL---PGLRSYAEITEIAKRVGFEVVKEKDL  280 (359)
Q Consensus       248 ~~~~~~~---~~~~~~~~~~~~l~~aGF~~i~~~~~  280 (359)
                       ..+..+   ..+.+.+...+.+  .|+..+...++
T Consensus       253 -~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm  285 (328)
T d1rjda_         253 -SRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM  285 (328)
T ss_dssp             -HHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred             -hcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence             112222   2345666655544  47877777666

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.61  E-value=0.013  Score=45.02  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=65.8

Q ss_pred             HHhcCCCCCCEEEEECC--CCChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-C-C-CCCCC
Q 018194          115 VDLIDVKAGDRILDVGC--GVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL-K-M-PFEDN  189 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~-~-~~~~~  189 (359)
                      .+.-..+++.+||=-|+  |.|..+..||+..|++|+++.-|++..+.+++.    |-. .+ +...|.. + . ....+
T Consensus        16 ~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~~   89 (167)
T d1tt7a2          16 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSKQ   89 (167)
T ss_dssp             HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCCC
T ss_pred             HHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccCC
Confidence            33334445667887764  346688889998899999999998888877665    322 11 1111211 1 1 12345


Q ss_pred             ccceEEecccccccCCHHHHHHHHHhccCCCCEEEEEEee
Q 018194          190 HFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWV  229 (359)
Q Consensus       190 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  229 (359)
                      .+|+|+-.-.       ...+.+..+.|+|+|+++++-..
T Consensus        90 gvd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          90 QWQGAVDPVG-------GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             CEEEEEESCC-------THHHHHHHTTEEEEEEEEECCCS
T ss_pred             CceEEEecCc-------HHHHHHHHHHhccCceEEEeecc
Confidence            7888765432       34678899999999999986433

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.04  E-value=0.33  Score=40.85  Aligned_cols=125  Identities=16%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             CCCEEEEECCCCChHHHHHHhhcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEeccc
Q 018194          122 AGDRILDVGCGVGGPMRAIAAHSRAN-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIEA  199 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~  199 (359)
                      .+++|||+-||.|.++..|.+. |.+ +.++|+++..++..+.++..        ..++|+.++... -..+|+++....
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeecccc
Confidence            5789999999999999888664 554 45689999999988877632        124677765421 235899886543


Q ss_pred             cccc---------CC----HHHHHHHHHhccCCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 018194          200 TCHA---------PK----LEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYAEITEI  266 (359)
Q Consensus       200 l~~~---------~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (359)
                      -.-+         .|    .-..+-++.+.++|.  +++.|-+..-....                   .....+.+.+.
T Consensus        81 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~~~~~~~-------------------~~~~~~~i~~~  139 (327)
T d2c7pa1          81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNFASHD-------------------NGNTLEVVKNT  139 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGGGTGG-------------------GGHHHHHHHHH
T ss_pred             cchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccchhhhhhc-------------------cchhhHHhhhH
Confidence            2211         11    223333445667884  44445333211000                   00123567788


Q ss_pred             HHhCCCeEEE
Q 018194          267 AKRVGFEVVK  276 (359)
Q Consensus       267 l~~aGF~~i~  276 (359)
                      |++.||.+..
T Consensus       140 l~~lGY~~~~  149 (327)
T d2c7pa1         140 MNELDYSFHA  149 (327)
T ss_dssp             HHHTTBCCEE
T ss_pred             HHhcCCccee
Confidence            8999987653

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.54  Score=35.78  Aligned_cols=94  Identities=18%  Similarity=0.214  Sum_probs=61.2

Q ss_pred             CCCCCEEEEECCC--CChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEE
Q 018194          120 VKAGDRILDVGCG--VGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKM--PFEDNHFDGAY  195 (359)
Q Consensus       120 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~v~  195 (359)
                      ..++.+||=.|+.  .|..+..+++..|++|+++.-+++..+.+++.-.       -.++.-+-.+.  .+....+|.|+
T Consensus        29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa-------d~vi~~~~~~~~~~l~~~~~~~vv  101 (177)
T d1o89a2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA-------SRVLPRDEFAESRPLEKQVWAGAI  101 (177)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE-------EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred             CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc-------ccccccccHHHHHHHHhhcCCeeE
Confidence            3344578866542  4567788888889999999999998887765421       12232221111  23445678764


Q ss_pred             ecccccccCCHHHHHHHHHhccCCCCEEEEEE
Q 018194          196 SIEATCHAPKLEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       196 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -     .+-  ...+....+.|+++|+++.+-
T Consensus       102 D-----~Vg--g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2         102 D-----TVG--DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             E-----SSC--HHHHHHHHHTEEEEEEEEECC
T ss_pred             E-----Ecc--hHHHHHHHHHhccccceEeec
Confidence            2     122  346889999999999999853

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.067  Score=45.63  Aligned_cols=123  Identities=16%  Similarity=0.229  Sum_probs=73.9

Q ss_pred             CCEEEEECCCCChHHHHHHhhcCC--E-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEe
Q 018194          123 GDRILDVGCGVGGPMRAIAAHSRA--N-VVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAYS  196 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l~~~~~~--~-v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~  196 (359)
                      .++|+|+-||.|.++..+... |.  + +.++|+++..++..+.++      ++..+...|+.++.   ++...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence            468999999999988777553 42  3 568999999888877654      23567778887764   22235798886


Q ss_pred             ccccccc---------CC-HHHHHHHHHhcc-----CCCCEEEEEEeeeCcccccCchHHHHHHhhhhcCCCCCCCCCHH
Q 018194          197 IEATCHA---------PK-LEDVYAEVFRVL-----KPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYA  261 (359)
Q Consensus       197 ~~~l~~~---------~~-~~~~l~~~~~~L-----kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (359)
                      ...-..+         .| ...++-++.+++     ||  .+++.|-+..-.  .                    ....+
T Consensus        75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~l~--~--------------------~~~~~  130 (343)
T d1g55a_          75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKGFE--V--------------------SSTRD  130 (343)
T ss_dssp             CCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETTGG--G--------------------SHHHH
T ss_pred             ecccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCCcc--c--------------------chhhH
Confidence            5433222         12 223444444443     46  455555433210  0                    01135


Q ss_pred             HHHHHHHhCCCeEEE
Q 018194          262 EITEIAKRVGFEVVK  276 (359)
Q Consensus       262 ~~~~~l~~aGF~~i~  276 (359)
                      .+.+.|++.||.+..
T Consensus       131 ~i~~~l~~~GY~v~~  145 (343)
T d1g55a_         131 LLIQTIENCGFQYQE  145 (343)
T ss_dssp             HHHHHHHHTTEEEEE
T ss_pred             HHHhhhhccccccce
Confidence            678889999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.98  E-value=0.12  Score=39.06  Aligned_cols=86  Identities=10%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             CEEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          124 DRILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       124 ~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      ++|.=||+|.  +.++..|.+ .+.+|+++|.+++.++.+++.    +.   +.....+.+.    -...|+|+..--  
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~~----~~~~DiIilavp--   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLSL----LQTAKIIFLCTP--   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT----TS---CSEEESCGGG----GTTCSEEEECSC--
T ss_pred             CEEEEEeecHHHHHHHHHHHH-CCCEEEEEECCchHHHHHHHh----hc---cceeeeeccc----ccccccccccCc--
Confidence            4677888873  234445544 478999999999988877653    21   2222222222    145698876432  


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEE
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                       ......+++++...++|+-.++
T Consensus        67 -~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          67 -IQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             -HHHHHHHHHHHGGGSCTTCEEE
T ss_pred             -Hhhhhhhhhhhhhhccccccee
Confidence             1246788999999999987665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.70  E-value=0.46  Score=34.05  Aligned_cols=88  Identities=14%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             CEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEe
Q 018194          124 DRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYS  196 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~  196 (359)
                      |+|+=+|+  |.++..+++   ..+.+|+.+|.+++.++.+.+..       .+.++.+|..+..    ..-...|.+++
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            46777776  566666665   24689999999999988776542       3678999998743    22356788877


Q ss_pred             cccccccCCHHHHHHHHHhccCCCCEE
Q 018194          197 IEATCHAPKLEDVYAEVFRVLKPGSLY  223 (359)
Q Consensus       197 ~~~l~~~~~~~~~l~~~~~~LkpgG~l  223 (359)
                      ...   -++.........+.+.+.-.+
T Consensus        72 ~t~---~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          72 VTG---KEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             CCS---CHHHHHHHHHHHHHTTCCCEE
T ss_pred             cCC---cHHHHHHHHHHHHHcCCceEE
Confidence            421   111223444555667777444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.36  E-value=0.25  Score=38.11  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             HHHhcCCCCC--CEEEEEC--CCCChHHHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 018194          114 AVDLIDVKAG--DRILDVG--CGVGGPMRAIAAHSRA-NVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---  185 (359)
Q Consensus       114 ~~~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---  185 (359)
                      +....+++++  .+||=.|  .|.|..+..+++..|+ .|++++.+++......+   ..+-.   .++...-.+..   
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~gad---~vi~~~~~~~~~~~   93 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGFD---AAVNYKTGNVAEQL   93 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCCS---EEEETTSSCHHHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccce---EEeeccchhHHHHH
Confidence            3445566666  7799877  4578899999997776 57777777665544322   22321   22222221111   


Q ss_pred             --CCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          186 --FEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       186 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                        ..+..+|+|+-.-.       ...+....++|+|||+++.+
T Consensus        94 ~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          94 REACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence              12356899875332       35678899999999999875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.14  Score=41.72  Aligned_cols=85  Identities=15%  Similarity=0.030  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+.+|=-|++.| +...+++   .-|++|+.+|.+++.++.+.+.........++.++.+|+.+..     +     .-
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            3678888887655 3444443   1478999999999988877766654433457889999998742     0     11


Q ss_pred             CccceEEecccccccCCHH
Q 018194          189 NHFDGAYSIEATCHAPKLE  207 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~~~  207 (359)
                      +..|+++.+.......+++
T Consensus        81 G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          81 GRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             SCCCEEEECCCCCCSSSHH
T ss_pred             CCcCeecccccccccccch
Confidence            5789999887776665543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.87  E-value=0.22  Score=37.60  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=56.4

Q ss_pred             EEEEECCCC-C-hHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEeccccc
Q 018194          125 RILDVGCGV-G-GPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATC  201 (359)
Q Consensus       125 ~vLDiGcG~-G-~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~  201 (359)
                      +|+=||||. | .++..|.+. ...+|+++|.+++.++.+++.    +.   +.....+....  .....|+|+..--. 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~~~~~dlIila~p~-   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--EDFSPDFVMLSSPV-   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--GGTCCSEEEECSCH-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--hccccccccccCCc-
Confidence            588899985 3 355555553 346999999999999888764    21   22222222221  23456888765431 


Q ss_pred             ccCCHHHHHHHHHhccCCCCEEE
Q 018194          202 HAPKLEDVYAEVFRVLKPGSLYV  224 (359)
Q Consensus       202 ~~~~~~~~l~~~~~~LkpgG~l~  224 (359)
                        .....++.++...++++..+.
T Consensus        73 --~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          73 --RTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             --HHHHHHHHHHHHHSCTTCEEE
T ss_pred             --hhhhhhhhhhhcccccccccc
Confidence              246678899999999986665

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.19  Score=41.37  Aligned_cols=102  Identities=18%  Similarity=0.078  Sum_probs=70.1

Q ss_pred             CCEEEEECCCCChHHHHH----HhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 018194          123 GDRILDVGCGVGGPMRAI----AAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP--------F--ED  188 (359)
Q Consensus       123 ~~~vLDiGcG~G~~~~~l----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~--~~  188 (359)
                      |++|.=|-.|++.+...+    ++..+.+|+..+.+++.++.+.+.+...+  .++.++.+|+.+..        .  .-
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            567755544445554444    44347899999999999988888877665  36899999998743        0  12


Q ss_pred             CccceEEecccccccC---C-----H-----------HHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAP---K-----L-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~---~-----~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..|+++.+..+.+..   +     +           ..+.+.+...|+++|+++.+
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            5799999887664321   1     1           13566777888999998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.7  Score=37.11  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=57.9

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .|+.+|=-|++.|.   ++..+++. |++|+.+|.+++.++...+.+...+  .++.++.+|+.+..          -..
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            46788877887764   44555554 7899999999999988888777654  46899999998742          123


Q ss_pred             CccceEEeccccccc
Q 018194          189 NHFDGAYSIEATCHA  203 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~  203 (359)
                      +..|+++.+..+.+.
T Consensus        83 g~idilinnag~~~~   97 (244)
T d1yb1a_          83 GDVSILVNNAGVVYT   97 (244)
T ss_dssp             CCCSEEEECCCCCCC
T ss_pred             CCCceeEeecccccc
Confidence            568988877766543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.93  E-value=0.55  Score=39.09  Aligned_cols=67  Identities=10%  Similarity=0.118  Sum_probs=49.5

Q ss_pred             CEEEEECCCCChHHHHHHhhcCCEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEecc
Q 018194          124 DRILDVGCGVGGPMRAIAAHSRANV-VGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFE-DNHFDGAYSIE  198 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~~~~~v-~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~  198 (359)
                      ++|||+-||.|.+..-+.+. |.++ .++|+++..++..+.++     +  -.+..+|+.++... -...|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence            58999999999998877664 5554 49999999888776654     2  35678999887521 23579988654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.04  E-value=0.54  Score=40.81  Aligned_cols=53  Identities=9%  Similarity=0.180  Sum_probs=43.1

Q ss_pred             cCCCCCCEEEEECCCCChHHHHHHhh-c--CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 018194          118 IDVKAGDRILDVGCGVGGPMRAIAAH-S--RANVVGITINEYQVNRARLHNKKAGL  170 (359)
Q Consensus       118 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~g~D~s~~~~~~a~~~~~~~~~  170 (359)
                      +.+.++..++|||+-.|..+..++.. .  ..+|+++|+++...+..+++......
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            34667889999999999988877653 2  35999999999999999988876543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.38  E-value=1  Score=36.44  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+++|=-|++.|.   .+..|++ -|++|+.+|.+++.++...+.....+...++.++.+|+.+..     +     .-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAA-EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            36788888877664   4445555 478999999999999888777666555557889999998742     0     11


Q ss_pred             CccceEEecccc
Q 018194          189 NHFDGAYSIEAT  200 (359)
Q Consensus       189 ~~fD~v~~~~~l  200 (359)
                      +..|+++.+..+
T Consensus        82 G~iDiLVnnAG~   93 (258)
T d1iy8a_          82 GRIDGFFNNAGI   93 (258)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            578998877544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.35  E-value=0.57  Score=33.52  Aligned_cols=87  Identities=15%  Similarity=0.001  Sum_probs=51.8

Q ss_pred             EEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEecc
Q 018194          126 ILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPF----EDNHFDGAYSIE  198 (359)
Q Consensus       126 vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~v~~~~  198 (359)
                      ++=+|+  |.++..+++.   .|.+|+.+|.+++.++.++..        ....+.+|..+...    .-...|.|++..
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhccCCccccEEEEEc
Confidence            444555  5666666652   578999999999998876432        24677889877531    123567766543


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .   -.+....+-.+.+.+.|...++.
T Consensus        73 ~---~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          73 G---ANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             C---SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             C---chHHhHHHHHHHHHHcCCCcEEe
Confidence            2   01233344444445556667664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.40  E-value=2.2  Score=34.47  Aligned_cols=102  Identities=19%  Similarity=0.079  Sum_probs=66.6

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITIN-EYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FE  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~  187 (359)
                      .|+++|=.|++.|.   .+..|++ -|++|+.+|.+ ++.++...+...+.+  .++.+..+|+.+..          -.
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGR-RGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            36788877876553   3344444 47899999986 566666666666655  35889999998732          01


Q ss_pred             CCccceEEecccccccC--------CH-----------HHHHHHHHhccCCCCEEEEE
Q 018194          188 DNHFDGAYSIEATCHAP--------KL-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~--------~~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .+..|+++.+.......        ++           ..+.+.+...|+.+|.++++
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i  151 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  151 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence            25679888776554332        11           23566777888888887765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.91  E-value=0.3  Score=39.92  Aligned_cols=52  Identities=15%  Similarity=0.024  Sum_probs=36.8

Q ss_pred             EEEEcCCCCC--CCCCCccceEEeccccc-----------ccCCHHHHHHHHHhccCCCCEEEEE
Q 018194          175 EVVCGNFLKM--PFEDNHFDGAYSIEATC-----------HAPKLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       175 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~-----------~~~~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      .|+.+|..+.  .++++++|+|+..--..           ++......+.++.|+|||||.+++.
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            4667777663  36788899988754321           1122467889999999999999874

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.71  E-value=1.5  Score=35.26  Aligned_cols=103  Identities=18%  Similarity=0.029  Sum_probs=67.6

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGI-TINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FE  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~  187 (359)
                      .|+++|=.|+ ++.....+++.   -|++|+.. +-++..++...+.....+  .++.++.+|+.+..          ..
T Consensus         5 ~GK~alITGa-s~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            4778886665 45555555542   37888865 567777788777777765  46889999998632          11


Q ss_pred             CCccceEEecccccccCC-------------------HHHHHHHHHhccCCCCEEEEEE
Q 018194          188 DNHFDGAYSIEATCHAPK-------------------LEDVYAEVFRVLKPGSLYVSYE  227 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~  227 (359)
                      -+..|+++.+....+..+                   .-.+.+.+...++.+|.++++.
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence            256898888776654421                   1235666777778888776643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=85.19  E-value=1.6  Score=32.74  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             CEEEEECCCCCh--HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CCCCCCCccceEEecc
Q 018194          124 DRILDVGCGVGG--PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFL---KMPFEDNHFDGAYSIE  198 (359)
Q Consensus       124 ~~vLDiGcG~G~--~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~~~~fD~v~~~~  198 (359)
                      ++|-=||+|.-.  ++..|++ .|.+|+++|.++..++..++.-......+..........   +..-.-...|+|+..-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            477788888633  3444455 478999999999888776654211000000011100000   0000014578887643


Q ss_pred             cccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          199 ATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       199 ~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      -   ......+++++...|+++-.+++
T Consensus        81 ~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          81 P---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             C---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             c---hhHHHHHHHHhhhccCCCCEEEE
Confidence            1   23568899999999999886654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.83  E-value=0.32  Score=39.16  Aligned_cols=52  Identities=10%  Similarity=-0.054  Sum_probs=34.8

Q ss_pred             EEEEcCCCCC--CCCCCccceEEecccccc-------cC-------CHHHHHHHHHhccCCCCEEEEE
Q 018194          175 EVVCGNFLKM--PFEDNHFDGAYSIEATCH-------AP-------KLEDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       175 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~~-------~~-------~~~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +++++|..+.  .++++++|+|+..--...       ..       .....++++.|+|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            4677777663  256788888887543210       01       1346888999999999988763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.69  E-value=1.7  Score=34.95  Aligned_cols=76  Identities=12%  Similarity=0.110  Sum_probs=54.1

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+++|=-|++.|.   .+..|++ -|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..     +     .-
T Consensus         4 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAE-EGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            47788878876653   3444444 47899999999999988888776654  46889999998632     0     11


Q ss_pred             CccceEEecccc
Q 018194          189 NHFDGAYSIEAT  200 (359)
Q Consensus       189 ~~fD~v~~~~~l  200 (359)
                      +..|+++.+...
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            578988876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.55  E-value=1.5  Score=35.70  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-----C-----C
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP-----F-----E  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  187 (359)
                      .|+++|=-|++.|.   .+..|++ -|++|+.+|.+++.++.+.+.....+.+ .++.++.+|+.+..     +     .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAK-EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            36778877876653   3344444 4789999999999998888877776543 46889999998742     0     1


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      -+..|+++.+...
T Consensus        82 ~G~iDilVnnAG~   94 (274)
T d1xhla_          82 FGKIDILVNNAGA   94 (274)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCceEEEeeccc
Confidence            1568998877543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=2.2  Score=33.87  Aligned_cols=75  Identities=20%  Similarity=0.069  Sum_probs=49.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .|+++|=-|++.| +...+++.   -|++|+.+|.+++.++...+...     .++.++..|+.+..          -.-
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence            3667777776655 44444431   47899999999988877665543     35788899987632          012


Q ss_pred             CccceEEecccccc
Q 018194          189 NHFDGAYSIEATCH  202 (359)
Q Consensus       189 ~~fD~v~~~~~l~~  202 (359)
                      +..|+++.+....+
T Consensus        77 g~iDilVnnAg~~~   90 (243)
T d1q7ba_          77 GEVDILVNNAGITR   90 (243)
T ss_dssp             CSCSEEEECCCCCC
T ss_pred             CCcceehhhhhhcc
Confidence            57898887765443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.65  E-value=1.3  Score=31.43  Aligned_cols=84  Identities=8%  Similarity=-0.011  Sum_probs=54.6

Q ss_pred             CCCChHHHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEecccccccCC
Q 018194          131 CGVGGPMRAIAAH-SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSIEATCHAPK  205 (359)
Q Consensus       131 cG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~~  205 (359)
                      ||.|..+..+++. -+..++.+|.++..++..+..        .+.++.+|..+..    ..-...+.+++...   -+.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~---~d~   74 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVNLE---SDS   74 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS---SHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEecc---chh
Confidence            4567788888874 245789999999988766432        3789999997732    22345677776331   111


Q ss_pred             HHHHHHHHHhccCCCCEEEE
Q 018194          206 LEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       206 ~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ....+....+.+.|...++.
T Consensus        75 ~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          75 ETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHHHHCSSSCEEE
T ss_pred             hhHHHHHHHHHHCCCceEEE
Confidence            23344555677888887765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.62  E-value=1.2  Score=28.65  Aligned_cols=49  Identities=16%  Similarity=0.061  Sum_probs=38.0

Q ss_pred             HHhcCCCCCCEEEEECCCC--ChHHHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 018194          115 VDLIDVKAGDRILDVGCGV--GGPMRAIAAHSRANVVGITINEYQVNRARL  163 (359)
Q Consensus       115 ~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~  163 (359)
                      .+....+++.+||=.|...  |..+..+++..+++|+++.-|++..+.+++
T Consensus        24 ~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          24 EDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             HHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred             HhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence            3444556788999887643  557788888889999999999988888765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.51  E-value=2.4  Score=34.00  Aligned_cols=78  Identities=17%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----------FE  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~  187 (359)
                      .|+++|=.|+..|.   .+..+++ -|++|+.++.++..++.+.+.....+  .++.++.+|+.+..           .-
T Consensus         5 ~gK~alITGas~GIG~aia~~la~-~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAG-LGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            47889989887553   3334444 47899999999999888888777665  45888899998742           11


Q ss_pred             CCccceEEecccccc
Q 018194          188 DNHFDGAYSIEATCH  202 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~  202 (359)
                      .+..|+++.+....+
T Consensus        82 ~g~idilinnag~~~   96 (258)
T d1ae1a_          82 DGKLNILVNNAGVVI   96 (258)
T ss_dssp             TSCCCEEEECCCCCC
T ss_pred             CCCcEEEeccccccc
Confidence            256788887655544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.36  E-value=2.2  Score=34.29  Aligned_cols=78  Identities=14%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C------C
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F------E  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~------~  187 (359)
                      .|+++|=-|++.|.   .+..|++ -|++|+.+|.+++.++.+.+.....+  .++.++.+|+.+..     +      -
T Consensus         7 ~GK~alITGas~GIG~aia~~la~-~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELAS-LGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            47788888877553   3344444 47899999999999988887777654  46888999997632     0      1


Q ss_pred             CCccceEEecccccc
Q 018194          188 DNHFDGAYSIEATCH  202 (359)
Q Consensus       188 ~~~fD~v~~~~~l~~  202 (359)
                      .+..|+++.+....+
T Consensus        84 ~~~idilvnnAG~~~   98 (259)
T d2ae2a_          84 HGKLNILVNNAGIVI   98 (259)
T ss_dssp             TTCCCEEEECCCCCC
T ss_pred             CCCceEEEECCceec
Confidence            236899888765543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.33  E-value=4  Score=32.21  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=63.8

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+++|=.|++.|.   .+..|++ -|++|+.++.+.+.++...+   +  +..++.++++|+.+..     +     .-
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAR-EGASLVAVDREERLLAEAVA---A--LEAEAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHH---T--CCSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH---H--cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            47788888887553   3334444 47899999999987655433   2  3457889999997642     0     01


Q ss_pred             CccceEEecccccccCC--------H-----------HHHHHHHHhccCCCCEEEEE
Q 018194          189 NHFDGAYSIEATCHAPK--------L-----------EDVYAEVFRVLKPGSLYVSY  226 (359)
Q Consensus       189 ~~fD~v~~~~~l~~~~~--------~-----------~~~l~~~~~~LkpgG~l~~~  226 (359)
                      +..|+++.+....+...        +           ..+.+.+...++.++.+++.
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~  134 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT  134 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence            56898888765544321        1           13456666778888876654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.19  E-value=1.6  Score=35.37  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=54.4

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-----C-----C
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP-----F-----E  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  187 (359)
                      .|+++|=.|++.|.   .+..|++ -|++|+.+|.+++.++.+.+.+.+.+.. .++.++.+|+.+..     +     .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~-~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQ-EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46778877766553   3344444 4789999999999999888887765532 46889999998742     0     1


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      -+..|+++.+...
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence            1568998876543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.82  E-value=2  Score=34.41  Aligned_cols=77  Identities=18%  Similarity=0.089  Sum_probs=53.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+++|=-|++. .+...+++.   -|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..     +     .-
T Consensus        10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467777666554 444444432   47899999999999888887777654  46889999998732     0     01


Q ss_pred             CccceEEeccccc
Q 018194          189 NHFDGAYSIEATC  201 (359)
Q Consensus       189 ~~fD~v~~~~~l~  201 (359)
                      +..|+++.+....
T Consensus        87 g~iDilvnnAG~~   99 (255)
T d1fmca_          87 GKVDILVNNAGGG   99 (255)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEeeeCCcCC
Confidence            5789888776544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=2.9  Score=33.14  Aligned_cols=74  Identities=23%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccc
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP------FEDNHFD  192 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD  192 (359)
                      .|+++|=.|++.|.   .+..+++ -|++|+.+|.+++.++...+..      .++..++.|+.+..      -.-++.|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~-~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHA-TGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            57899989977653   3344444 4789999999998877655432      24788889987632      1225789


Q ss_pred             eEEecccccc
Q 018194          193 GAYSIEATCH  202 (359)
Q Consensus       193 ~v~~~~~l~~  202 (359)
                      +++.+.....
T Consensus        79 ilVnnAg~~~   88 (244)
T d1pr9a_          79 LLVNNAAVAL   88 (244)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEecccccc
Confidence            9887765544

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.26  E-value=0.89  Score=34.84  Aligned_cols=75  Identities=12%  Similarity=-0.069  Sum_probs=49.3

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEE
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP---FEDNHFDGAY  195 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~  195 (359)
                      .+++||=.|++.|.   .+..+++ .|++|+.++.+++.++...+......   ++.+...|..+..   -.-+..|+++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAG-EGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh-hccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCeee
Confidence            57899999876553   3444445 47899999999998877766655432   3455666665532   1124579888


Q ss_pred             ecccc
Q 018194          196 SIEAT  200 (359)
Q Consensus       196 ~~~~l  200 (359)
                      .+...
T Consensus        98 n~Ag~  102 (191)
T d1luaa1          98 TAGAI  102 (191)
T ss_dssp             ECCCT
T ss_pred             ecCcc
Confidence            76543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.94  E-value=2.2  Score=34.33  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=53.1

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-----C-----C
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLD-SLCEVVCGNFLKMP-----F-----E  187 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~-----~  187 (359)
                      .|+.+|=-|++.| +...+++.   -|++|+.+|.+++.++.+.+.....+.. .++.++.+|+.+..     +     .
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            3567777776654 44444431   4799999999999998888777766543 46899999997642     0     1


Q ss_pred             CCccceEEecccc
Q 018194          188 DNHFDGAYSIEAT  200 (359)
Q Consensus       188 ~~~fD~v~~~~~l  200 (359)
                      -+..|+++.+...
T Consensus        83 ~g~iDilvnnAG~   95 (264)
T d1spxa_          83 FGKLDILVNNAGA   95 (264)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             hCCCCEeeccccc
Confidence            1578988876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.78  E-value=1.9  Score=34.80  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=51.7

Q ss_pred             CCCEEEEECCCCCh---HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 018194          122 AGDRILDVGCGVGG---PMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----F-----ED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~  188 (359)
                      .|+.+|=.|++.|.   .+..|++ .|++|+.+|.+++.++.+.+....   ..++.++.+|+.+..     +     .-
T Consensus         5 ~gKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVR-YGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47788888877663   3334444 478999999999888776665533   346888999997642     0     11


Q ss_pred             CccceEEecccc
Q 018194          189 NHFDGAYSIEAT  200 (359)
Q Consensus       189 ~~fD~v~~~~~l  200 (359)
                      +..|+++.+...
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            578998876654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.27  E-value=1.9  Score=35.98  Aligned_cols=72  Identities=14%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             CEEEEECCCCChHHHHHHhh---cCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCcc
Q 018194          124 DRILDVGCGVGGPMRAIAAH---SRANVVGITI----NEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP-----FEDNHF  191 (359)
Q Consensus       124 ~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~~f  191 (359)
                      |+||=.| |+|.++..|++.   -+.+|+++|.    ....+.......     ..+++++++|+.+..     +....+
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~l~~~~~~~~~   74 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-----GKHPTFVEGDIRNEALMTEILHDHAI   74 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-----TSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-----CCCCEEEEeecCCHHHHHHHHhccCC
Confidence            5677666 678888877653   4679999984    233333322221     246899999998753     233468


Q ss_pred             ceEEeccccc
Q 018194          192 DGAYSIEATC  201 (359)
Q Consensus       192 D~v~~~~~l~  201 (359)
                      |+|+-..+..
T Consensus        75 d~ViHlAa~~   84 (338)
T d1udca_          75 DTVIHFAGLK   84 (338)
T ss_dssp             SEEEECCSCC
T ss_pred             CEEEECCCcc
Confidence            9988655443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.97  E-value=2.6  Score=33.63  Aligned_cols=78  Identities=21%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             CCCEEEEECCCCChHHHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 018194          122 AGDRILDVGCGVGGPMRAIAAH---SRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----------FED  188 (359)
Q Consensus       122 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~  188 (359)
                      .++.+|=.|++.| +...+++.   .|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+..          -.-
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4667777786655 55444442   47899999999999988887776654  46889999998732          012


Q ss_pred             CccceEEecccccc
Q 018194          189 NHFDGAYSIEATCH  202 (359)
Q Consensus       189 ~~fD~v~~~~~l~~  202 (359)
                      +..|+++.+.....
T Consensus        86 g~iDilvnnag~~~   99 (251)
T d2c07a1          86 KNVDILVNNAGITR   99 (251)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCceeeeecccccc
Confidence            57898887765543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=1.4  Score=33.84  Aligned_cols=96  Identities=11%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             CEEEEECCCC-Ch-HHHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc-------CCC--------------CCeEEEEcC
Q 018194          124 DRILDVGCGV-GG-PMRAIAAHSRANVVGITINEYQVNRARLHNKKA-------GLD--------------SLCEVVCGN  180 (359)
Q Consensus       124 ~~vLDiGcG~-G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~--------------~~i~~~~~d  180 (359)
                      .+|-=||+|+ |. ++..++. .|.+|+.+|.+++.++.++++....       +..              .++.+. .|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred             EEEEEECcCHHHHHHHHHHHh-CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-ch
Confidence            4788899986 22 3333444 5789999999999999888765532       211              012221 11


Q ss_pred             CCCCCCCCCccceEEecccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          181 FLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       181 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      ..+   .-...|+|+-. +.+.+.-..++++++.+.++|+..+.-
T Consensus        83 ~~~---a~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilas  123 (192)
T d1f0ya2          83 AAS---VVHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFAS  123 (192)
T ss_dssp             HHH---HTTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             hHh---hhcccceehhh-cccchhHHHHHHHHHhhhcccCceeec
Confidence            111   01234666543 223233367899999999999977764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.28  E-value=2.6  Score=30.56  Aligned_cols=92  Identities=8%  Similarity=-0.072  Sum_probs=54.0

Q ss_pred             EEEEECCCCChHHHHHHh---hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEec
Q 018194          125 RILDVGCGVGGPMRAIAA---HSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMP----FEDNHFDGAYSI  197 (359)
Q Consensus       125 ~vLDiGcG~G~~~~~l~~---~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~  197 (359)
                      +|+=+|+  |..+..+++   ..+..|+.+|.+++......+...    ...+.++.+|..+..    ..-+..|.|++.
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            5666666  456655554   246799999999875443333322    235789999998742    123456777764


Q ss_pred             ccccccCCHHHHHHHHHhccCCCCEEEE
Q 018194          198 EATCHAPKLEDVYAEVFRVLKPGSLYVS  225 (359)
Q Consensus       198 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~  225 (359)
                      .-   -+.....+....+-+.|.-.++.
T Consensus        79 ~~---~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          79 SD---NDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SS---CHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             cc---cHHHHHHHHHHHHHhCCCCceEE
Confidence            31   01122333444566778777765