Citrus Sinensis ID: 018202

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccccEEEcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvkvieWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIsqvsflypvkilvgpkqeqelesfpsgnrsgnsaaskpvnpgsltiLGLHLtilpftkmslftdkkeVQRSATALGYIAHVVSLIASYLevplryplrlggshtyindyapsieptsdlssnialstntkpaefplflegqdATRAAYAVFLLNKDIEQLLNYIgvkslgprHVLANLKELLRTiqspeyidt
Flexible Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVkaeslkrsneleeMRERLEARRLLMekmsmrskvekedaknqeerLSMEVRSLLVAGTALSVARKRLQEsnrllagekgyGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKellrtiqspeyidt
Low Complexity Region (SEG)
MEqrqrqrqHLQHPTSTSKAIDPENVKVIEWEDYDQElarlwslssalsqaDDkkqtlqqklqsliqVKAESLKRSNeleemrerlearrllmeKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Disordered region (IsUnstruct)
*************************VKVIEWEDYDQELARLWSL****************************************************************************LLVAGTALSVARK******RLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG****************************SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTI********
Disordered Region (DISOPRED)
*********************************YDQELARLWSLSSAL*******************************************************************************************************QKLQKMLRMRQQFMISQVSFLYPVKILV************************PVNPGSLTILGLHLTIL*************VQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI***********************FLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSP*****
Disordered Region (DISEMBL)
*****************SKAIDPENVKVIEWEDYDQELARLWSLSSA************QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM**************RLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQ********************PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Disordered Region (DISPRO)
***********************ENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI***************TKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEY***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q9P2Y5	699	UV radiation resistance-a	yes	no	0.713	0.366	0.273	2e-14
O60149	474	Autophagy-related protein	no	no	0.364	0.276	0.272	1e-06

>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 141/318 (44%), Gaps = 62/318 (19%)

Query: 38  LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97
           L RL     A+ Q     Q   QK+   I+ K      SNEL++  E L+ + L+++   
Sbjct: 196 LLRLHRAQCAIKQT----QVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNEL 251

Query: 98  MRSK--VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ---ESNRLLAGEKGYGH-- 150
            R K  + +E A   +++++++ +     G+A S    +LQ   ES   L  E       
Sbjct: 252 ERQKKALGREVALLHKQQIALQDK-----GSAFSAEHLKLQLQKESLNELRKECTAKREL 306

Query: 151 LQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSL 210
             K    L +R + ++S++S++YP+ +       +  + F  G +  NS   +  + GS+
Sbjct: 307 FLKTNAQLTIRCRQLLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDGSI 360

Query: 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHT 270
                                      A ALGY AH+VS+I+ +L+VPLRYP+   GS +
Sbjct: 361 ---------------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRS 393

Query: 271 YINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYI 330
            I D             NI      K  EFPL+ +G +  +  Y V+LLNK+I QL    
Sbjct: 394 TIKD-------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQH 440

Query: 331 GVKSLGPRHVLANLKELL 348
           G+ +   R  L NLK  +
Sbjct: 441 GLGTPDLRQTLPNLKNFM 458

Homo sapiens (taxid: 9606)

>sp|O60149|ATG14_SCHPO Autophagy-related protein 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atg14 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 23/154 (14%)

Query: 204 PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPL 263
           P N    TI  L L+  P        DK      A ++G++AH++  ++ YLE  L YP+
Sbjct: 334 PGNHDEFTIRNLRLSFEP--------DKINNVEMAASIGFLAHLLQTLSKYLEKELAYPI 385

Query: 264 RLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDI 323
               S + I D       T D+ + I          FPL+   +      +A++LLN+D+
Sbjct: 386 LCASSRSSILDTL-----TPDIPTRI----------FPLYPATRPIELFEHAIYLLNQDV 430

Query: 324 EQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYI 357
              L   G+       +L N K+LL+ I S +++
Sbjct: 431 NDFLETFGLPIDQSMDILRNFKKLLQFILSGQHL 464

Required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific vps34 PI3-kinase complex I. This complex is essential to recruit the ATG8-phosphatidylinositol conjugate and the atg12-atg5 conjugate to the pre-autophagosomal structure.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
255554070	356	conserved hypothetical protein [Ricinus	0.988	0.997	0.708	1e-144
449442479	359	PREDICTED: UV radiation resistance-assoc	0.938	0.938	0.739	1e-144
449505315	359	PREDICTED: LOW QUALITY PROTEIN: UV radia	0.938	0.938	0.733	1e-142
225433608	345	PREDICTED: UV radiation resistance-assoc	0.949	0.988	0.737	1e-141
224141253	333	predicted protein [Populus trichocarpa]	0.924	0.996	0.712	1e-131
356525229	354	PREDICTED: uncharacterized protein LOC10	0.938	0.951	0.680	1e-129
297823059	353	hypothetical protein ARALYDRAFT_482212 [	0.930	0.946	0.665	1e-126
30685426	352	uncharacterized protein [Arabidopsis tha	0.927	0.946	0.662	1e-125
357518775	355	UV radiation resistance-associated gene	0.941	0.952	0.660	1e-125
79324025	276	uncharacterized protein [Arabidopsis tha	0.760	0.989	0.665	1e-101

>gi|255554070|ref|XP_002518075.1| conserved hypothetical protein [Ricinus communis] gi|223542671|gb|EEF44208.1| conserved hypothetical protein [Ricinus communis]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/360 (70%), Positives = 304/360 (84%), Gaps = 5/360 (1%)

Query: 1   MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQ 60
           ME+ ++    L+ P  TS++   E VK+I+WEDY+QE ARLWSLSSAL +A++KK  L+Q
Sbjct: 1   MEEEKKATLSLE-PRKTSES---EKVKLIQWEDYEQEAARLWSLSSALKEAEEKKLNLKQ 56

Query: 61  KLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120
           KL S IQVKAESL R NELEEMR++LEA+ L +E +S R+KV  E+AK +E RLSMEVRS
Sbjct: 57  KLNSFIQVKAESLSRLNELEEMRQKLEAKELAIESISARTKVAAENAKKEENRLSMEVRS 116

Query: 121 LLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG 180
           LLVAGTALSV+ K+LQES R ++GE+GYG L+ LQKMLR+RQQ+ ISQVS L+PVKI  G
Sbjct: 117 LLVAGTALSVSSKQLQESKRSVSGERGYGRLRNLQKMLRIRQQYTISQVSLLFPVKISAG 176

Query: 181 PKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATA 240
           P +EQELESFP+ ++SGN   SKPVN GSLTILGLHLT+LPFTK+S FTDKKE+Q+SATA
Sbjct: 177 PSEEQELESFPNTSKSGNYTGSKPVNQGSLTILGLHLTMLPFTKISFFTDKKEIQKSATA 236

Query: 241 LGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAE 299
           LGY+AH VSLIASYLEVPLRYP+RLGGS +YINDYAPS EPT  +LS + + STN KP E
Sbjct: 237 LGYVAHAVSLIASYLEVPLRYPVRLGGSRSYINDYAPSAEPTLPELSLSASSSTNVKPVE 296

Query: 300 FPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 359
           FPLFLEGQD TRAAYAVFLLNKD+EQLLNYIG+KSLGPRHVLANLKEL+RTIQS E++DT
Sbjct: 297 FPLFLEGQDTTRAAYAVFLLNKDLEQLLNYIGIKSLGPRHVLANLKELIRTIQSAEFLDT 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442479|ref|XP_004139009.1| PREDICTED: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/338 (73%), Positives = 288/338 (85%), Gaps = 1/338 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLSLNVLPFKKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  EFPLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEFPLFLDGQDTTRAAYAVFLLN 320

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           KD+EQLLN+IGVKSLGPRH+LANLKE+ R IQS +YID
Sbjct: 321 KDLEQLLNFIGVKSLGPRHILANLKEIFRVIQSADYID 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505315|ref|XP_004162433.1| PREDICTED: LOW QUALITY PROTEIN: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/338 (73%), Positives = 288/338 (85%), Gaps = 1/338 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL+L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLNLNVLPFXKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  E PLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEXPLFLDGQDTTRAAYAVFLLN 320

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           +D+EQLLN+IGVKSLGPRH+LANLKE+ R IQS +YID
Sbjct: 321 RDLEQLLNFIGVKSLGPRHILANLKEIFRVIQSADYID 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433608|ref|XP_002273954.1| PREDICTED: UV radiation resistance-associated gene protein [Vitis vinifera] gi|298205154|emb|CBI17213.3| unnamed protein product [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 253/343 (73%), Positives = 294/343 (85%), Gaps = 2/343 (0%)

Query: 18  SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
           ++++  ENVKVIEWED++QELARLWSLSSAL +A +KK +LQ+KL SL+QVKAESL RSN
Sbjct: 4   NQSLSSENVKVIEWEDFEQELARLWSLSSALKEAKEKKDSLQEKLNSLLQVKAESLNRSN 63

Query: 78  ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137
           ELEEM++RL+ R+ +   MSM+SK+ +ED K +EERL +EVRSLLVAGTALSV+R RLQ+
Sbjct: 64  ELEEMQQRLDDRKFVTGDMSMQSKIVEEDIKKKEERLGLEVRSLLVAGTALSVSRNRLQD 123

Query: 138 SNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSG 197
           +NRLL+GE+GY HL+ L+KMLR+RQQ MISQVSFLYPVK  +G   EQELESFPS +R+G
Sbjct: 124 ANRLLSGERGYVHLKNLEKMLRVRQQHMISQVSFLYPVKPSIG-SLEQELESFPSSSRAG 182

Query: 198 NSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEV 257
           N+  SKP+N GSLTI GL L +L   KMS FTDKKEVQRSATALGY+AH VSLIASYLEV
Sbjct: 183 NAVGSKPLNEGSLTISGLQLNMLAIKKMSFFTDKKEVQRSATALGYVAHAVSLIASYLEV 242

Query: 258 PLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAV 316
           PLRYPLRLGGS +YINDYAPSIEPT +D  SN  L TN K  EFPLFLEGQD TRAAYAV
Sbjct: 243 PLRYPLRLGGSRSYINDYAPSIEPTPTDSVSNSLLLTNLKHIEFPLFLEGQDTTRAAYAV 302

Query: 317 FLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 359
           FLLNKD+EQLLN+IGVKSLGPRHVLANLKELLRTI SPE+IDT
Sbjct: 303 FLLNKDLEQLLNFIGVKSLGPRHVLANLKELLRTILSPEFIDT 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141253|ref|XP_002323989.1| predicted protein [Populus trichocarpa] gi|222866991|gb|EEF04122.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/337 (71%), Positives = 282/337 (83%), Gaps = 5/337 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           + E  K IEWEDY+ E+ARLWSLSS+L+++  KKQ  +QKL+SLIQVK E+L R N+LEE
Sbjct: 2   ESEKEKFIEWEDYEHEVARLWSLSSSLNESKQKKQNFEQKLRSLIQVKEEALSRLNKLEE 61

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           M+ER+EAR+L++E++  +SKV  E++  +EERLS EVRSLLVAGTALSVA K+LQ+S R 
Sbjct: 62  MKERVEARKLVIERIKGQSKVAAENSTKEEERLSSEVRSLLVAGTALSVASKQLQDSRRS 121

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           LAGE+GY  L KLQK LR+RQQFMISQVS LYP+KI  GP +EQELESFPS N  G    
Sbjct: 122 LAGERGYVRLTKLQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSRNYVG---- 177

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGLHLT+ PFTKMS FTDKKEVQRSA+ALG++AH VSLIASYLEVPLRY
Sbjct: 178 SKPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRY 237

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
            LRLGGS++YI D APS+E +  LSS +  + NTKP EFPLFLEGQD TRAAYAVFLLNK
Sbjct: 238 SLRLGGSNSYIIDCAPSVESSDLLSSTLLTA-NTKPVEFPLFLEGQDTTRAAYAVFLLNK 296

Query: 322 DIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           D+EQLLNYIGV+SLGPRHVLANLKEL RTIQS E++D
Sbjct: 297 DLEQLLNYIGVRSLGPRHVLANLKELTRTIQSAEFLD 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525229|ref|XP_003531229.1| PREDICTED: uncharacterized protein LOC100794161 [Glycine max]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/338 (68%), Positives = 279/338 (82%), Gaps = 1/338 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++VKVI+W+D+  +LARL SLSSAL +A++KK+ LQ KL+SLIQV AESL R NELEE
Sbjct: 16  DPDHVKVIQWDDFQHDLARLASLSSALHEANEKKRNLQHKLESLIQVNAESLGRLNELEE 75

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE++++LME MS+ S++ KE+A  QEE+LS  V+SLLV+G ALSV  + LQES+RL
Sbjct: 76  MRQKLESKKMLMENMSICSRLAKEEASKQEEQLSGAVQSLLVSGGALSVTSRNLQESSRL 135

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+ E GY HL+KLQKMLR RQQ+M SQ+S LYPVKILVGP QEQELE++P G+ +G SA 
Sbjct: 136 LSEENGYVHLRKLQKMLRKRQQYMTSQISMLYPVKILVGPAQEQELEAYPLGSLAGTSAG 195

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KP+N GSLTI GLHL +L F KMS FTDKKE+Q SATALGY+AH VSLIASYL+VPLRY
Sbjct: 196 LKPINQGSLTIHGLHLNVLSFRKMSFFTDKKEIQNSATALGYVAHAVSLIASYLQVPLRY 255

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
           PLRLG SH+YI D APS E TS  +S+ A + N K  +FPLFLEGQD TRAAYAVFLLNK
Sbjct: 256 PLRLGASHSYIIDNAPSTELTSSEASSNA-NINAKHVKFPLFLEGQDTTRAAYAVFLLNK 314

Query: 322 DIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 359
           D+EQLLN+I  K+LGPRHVLANL+ELLRTIQS  +ID 
Sbjct: 315 DLEQLLNFIDAKTLGPRHVLANLRELLRTIQSSAFIDN 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823059|ref|XP_002879412.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata] gi|297325251|gb|EFH55671.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/338 (66%), Positives = 271/338 (80%), Gaps = 4/338 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+VK+IEWE++D EL RLWSLSSAL  A +KKQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDVKIIEWEEFDHELTRLWSLSSALKLATEKKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +E+ LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSIACKVIEQDVKKKEDNLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFMISQVSF+YP+KI  GP Q+QELESFP G+R      
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMISQVSFIYPLKIEAGPSQDQELESFPGGSR---LVG 193

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFT+MS FTDKKEVQ+SATALGY+AH VSLIA YL +P+RY
Sbjct: 194 TKPLSQGSVRILGLPFSMAPFTRMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRMPIRY 253

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS TYI DYAP IEP+ SD+S    LS N+   EFPLFL+GQD TRAAYAVFLLN
Sbjct: 254 PLRLGGSKTYIRDYAPYIEPSQSDMSPITTLSQNSNFVEFPLFLDGQDTTRAAYAVFLLN 313

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 314 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 351

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685426|ref|NP_850197.1| uncharacterized protein [Arabidopsis thaliana] gi|18700113|gb|AAL77668.1| At2g32760/F24L7.10 [Arabidopsis thaliana] gi|62320642|dbj|BAD95308.1| hypothetical protein [Arabidopsis thaliana] gi|94442409|gb|ABF18992.1| At2g32760 [Arabidopsis thaliana] gi|330253639|gb|AEC08733.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/338 (66%), Positives = 269/338 (79%), Gaps = 5/338 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+ K+IEWE++D EL RLWSLSSA+  A ++KQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 313 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518775|ref|XP_003629676.1| UV radiation resistance-associated gene protein [Medicago truncatula] gi|355523698|gb|AET04152.1| UV radiation resistance-associated gene protein [Medicago truncatula]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/339 (66%), Positives = 277/339 (81%), Gaps = 1/339 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++V++IEWED++ +LARL SLSSAL+QA +KK+ LQ KL+SLIQ   ESL R NELEE
Sbjct: 15  DPDDVRLIEWEDFEHDLARLSSLSSALNQAKEKKRNLQHKLESLIQFNGESLGRLNELEE 74

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE+++L+ME MS+RS++ KE A  QEE+LS  ++SLLVAG  LSV  + LQES+RL
Sbjct: 75  MRQKLESKKLMMENMSIRSRLAKEAAGKQEEQLSGALQSLLVAGGTLSVTSRNLQESSRL 134

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           ++ E GY  L+ LQKMLRMRQQ+M SQ+S LYPVK+LV P QEQELE++P G+ +G    
Sbjct: 135 MSEENGYVRLRNLQKMLRMRQQYMASQISMLYPVKLLVEPAQEQELEAYPLGSPAGTPPE 194

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KPVN GSLTI GLHL++L F KMS FTDKKE+Q+SATALGY+AH VSL+ASYL+VPLRY
Sbjct: 195 LKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLVASYLQVPLRY 254

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           P+RLG SH+YI D APSIE T S+ S++  + TN K  EFPLFLEGQD TRAAYAVFLL+
Sbjct: 255 PVRLGASHSYIIDNAPSIELTSSEASTSTKVFTNAKHVEFPLFLEGQDTTRAAYAVFLLS 314

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYIDT 359
           KD+EQLLN+IG KSLGPRHVLANL+EL RTIQS  +ID 
Sbjct: 315 KDLEQLLNFIGAKSLGPRHVLANLRELFRTIQSTAFIDN 353

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324025|ref|NP_001031467.1| uncharacterized protein [Arabidopsis thaliana] gi|330253640|gb|AEC08734.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/278 (66%), Positives = 220/278 (79%), Gaps = 5/278 (1%)

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 1   MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 60

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 61  LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 116

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 117 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 176

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 177 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 236

Query: 321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
           K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct: 237 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2046362	352	AT2G32760 "AT2G32760" [Arabido	0.927	0.946	0.565	3.9e-92
UNIPROTKB|F1NDB2	659	UVRAG "Uncharacterized protein	0.272	0.148	0.396	4.9e-11
UNIPROTKB|F1NAL8	679	UVRAG "Uncharacterized protein	0.272	0.144	0.396	5.3e-11
RGD|1589754	698	Uvrag "UV radiation resistance	0.272	0.140	0.396	2.1e-10
UNIPROTKB|F1PYG4	699	UVRAG "Uncharacterized protein	0.272	0.140	0.396	2.7e-10
UNIPROTKB|E9PR71	598	UVRAG "UV radiation resistance	0.272	0.163	0.396	2.7e-10
UNIPROTKB|Q9P2Y5	699	UVRAG "UV radiation resistance	0.272	0.140	0.396	4.3e-10
UNIPROTKB|F1N3U6	699	UVRAG "Uncharacterized protein	0.272	0.140	0.396	5.8e-10
UNIPROTKB|I3L6L5	537	UVRAG "Uncharacterized protein	0.272	0.182	0.351	1.8e-09
ZFIN|ZDB-GENE-040426-924	693	uvrag "UV radiation resistance	0.270	0.139	0.396	9e-09

TAIR|locus:2046362 AT2G32760 "AT2G32760" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 191/338 (56%), Positives = 229/338 (67%)

Query:    22 DPENVKVIEWEDYDQEXXXXXXXXXXXXXXDDXXXXXXXXXXXXXXVKAESLKRSNXXXX 81
             D E+ K+IEWE++D E               +              V  ESL+R+N    
Sbjct:    17 DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query:    82 XXXXXXXXXXXXXKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
                          K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct:    77 MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query:   142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
             L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct:   137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query:   202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
             +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct:   193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query:   262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
             PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct:   253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query:   321 KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYID 358
             K+IEQLLN++G  SLGPR VLANLKEL+R IQSP+YID
Sbjct:   313 KNIEQLLNFVGENSLGPRQVLANLKELIRIIQSPDYID 350

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NDB2 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   322 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 368

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   369 REFPLYPKGGEKLQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFM 419

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|F1NAL8 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   342 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 388

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   389 REFPLYPKGGEKLQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFM 439

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|1589754 Uvrag "UV radiation resistance associated gene" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   360 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 406

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   407 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 457

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|F1PYG4 UVRAG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|E9PR71 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   260 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 306

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   307 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 357

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|Q9P2Y5 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

UNIPROTKB|F1N3U6 UVRAG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 44/111 (39%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPVIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I QL    G+ +   R  L NLK  +
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQHGLGTPDLRQTLPNLKNFM 458

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|I3L6L5 UVRAG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 39/111 (35%), Positives = 60/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+++ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   199 AVALGYTAHLVSMVSFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 245

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+ +G +  +  Y V+LLNK+I Q+    G++    +++  N K  +
Sbjct:   246 REFPLYPKGGEKLQFDYGVYLLNKNIAQIKWETGLQKSNAKNIFPNEKSFV 296

GO:0010508 "positive regulation of autophagy" evidence=IEA

ZFIN|ZDB-GENE-040426-924 uvrag "UV radiation resistance associated gene" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 44/111 (39%), Positives = 61/111 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+V +I+ +L++PLRYP+   GS + I D   +I  T  L+         K 
Sbjct:   358 AVALGYTAHLVLMISCFLQIPLRYPVIHKGSRSTIKD---TI--TDKLTE--------KE 404

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELL 348
              EFPL+  G+   +  Y V+LLNK+I QL    G+ +   R  L NLK  L
Sbjct:   405 REFPLYPRGE-RFQFEYGVYLLNKNIAQLRYQHGLSTPDLRQTLPNLKNFL 454

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038844001 SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam10186	307	pfam10186, Atg14, UV radiation resistance protein	2e-04

>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 59/314 (18%), Positives = 117/314 (37%), Gaps = 77/314 (24%)

Query: 44  LSSALSQADDKKQTLQQKLQ--------SLIQVKAESLKRSNELEEMRERLEARRLLMEK 95
           L  A ++ D K      KL+        + I+ +   LK   E+E+ RER+E  +  + +
Sbjct: 47  LEGATNE-DGKLAADLLKLEVARKKERLNQIRARISQLKE--EIEQKRERIEELKRALAQ 103

Query: 96  MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQ 155
              RS +     + ++ R S       +      + R R +              L  L 
Sbjct: 104 R--RSDLSSASYQLEKRRASQ------LEKLQDEIKRTRSK--------------LNALH 141

Query: 156 KMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGL 215
            +L  ++ F+  +++ L+P++ ++  ++                ++S+P   G + ++ L
Sbjct: 142 SLLAEKRSFLCRELAKLFPLRRVIRGRK--------------GDSSSEPYTIGGVPLVDL 187

Query: 216 H-LTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 274
             L  LP           EV   + +LGY+A +++L++ YL + L   + L  S    + 
Sbjct: 188 RDLNSLP----------PEVI--SASLGYMAQLLNLVSHYLSIRLPAEITLPCS----DY 231

Query: 275 YAPSIEP-TSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVK 333
             P+I      +   +   +   P  +  F EG         V LL  ++  L    G+ 
Sbjct: 232 PQPTIYSPPLFIDRPLPKLSKEDPETYSDFQEG---------VSLLAYNVLWLCRTQGLD 282

Query: 334 ---SLGPRHVLANL 344
               L        L
Sbjct: 283 VPSLLDQYEDDCLL 296

The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localisation of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
PF10186	302	Atg14: UV radiation resistance protein and autopha	100.0
KOG2896	377	consensus UV radiation resistance associated prote	100.0
KOG4398	359	consensus Predicted coiled-coil protein [General f	99.62
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	99.06
KOG2751	447	consensus Beclin-like protein [Signal transduction	98.33
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.91
PRK11637	428	AmiB activator; Provisional	92.88
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.61
PRK10869	553	recombination and repair protein; Provisional	91.28
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.87
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	90.55
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	90.51
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	90.03
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	89.61
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.47
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	88.44
PRK09039	343	hypothetical protein; Validated	87.91
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.55
KOG2896	377	consensus UV radiation resistance associated prote	86.28
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	86.18
PRK12704	520	phosphodiesterase; Provisional	84.47
PRK09039	343	hypothetical protein; Validated	84.19
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	83.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.49
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.51
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.19
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.39
PHA02562	562	46 endonuclease subunit; Provisional	81.28
PRK00409	782	recombination and DNA strand exchange inhibitor pr	81.11
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	80.97
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	80.51
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	80.24

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=100.00  E-value=2.3e-41  Score=323.43  Aligned_cols=274  Identities=31%  Similarity=0.467  Sum_probs=214.3

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 018202           40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL  114 (359)
Q Consensus        40 rL~~L~~~iq~a~~~~~~L~~qI~~~le-----~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L  114 (359)
                      +|+++..+|+++.++++.|..+|+++|+     ..........++.+++++++.++..++..+.+++..++.+.+.++.|
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999     66666678889999999999999999998888888888888888888


Q ss_pred             HHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCC
Q 018202          115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN  194 (359)
Q Consensus       115 ~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~~IyPI~~~~~~~~~~~l~~~~~~~  194 (359)
                      ..+...+.............+.+....+.  .....+..++.++..+|..++.+|..||||+++..++.           
T Consensus       101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~-----------  167 (302)
T PF10186_consen  101 EQRRSRLSASQDLVESRQEQLEELQNELE--ERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRR-----------  167 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeccccc-----------
Confidence            88877766222233333333444333322  23455777999999999999999999999998721100           


Q ss_pred             CCCCCCCCCCCCCcceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeec
Q 018202          195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND  274 (359)
Q Consensus       195 ~~~~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D  274 (359)
                             +.+..+..|+|+|++||+..     .|...+ .+.|+||||||||+|.++|+||+|||||||.+.||+|+|.|
T Consensus       168 -------~~~~~~~~~~I~~~~lp~~~-----~~~~~~-~~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d  234 (302)
T PF10186_consen  168 -------PSDSSSSEYTICGLPLPNSR-----DFNSLP-DEEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID  234 (302)
T ss_pred             -------CCCCCCCCeeecCcccCCCc-----ccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence                   00011468999999999964     232333 35799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccccCCCCCcccCcccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHcc
Q 018202          275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQ  352 (359)
Q Consensus       275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV~LLNknI~qL~~~~Gl~~~--d~r~tL~NLk~Ll~~i~  352 (359)
                       .+.              ....+..++.+.++.++++|+|||||||+||+|||+++|+++.  |+.++|+||..++..+.
T Consensus       235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~~l~~~~~l~nl~~~l~~l~  299 (302)
T PF10186_consen  235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQGIDVPLLDPRDTLGNLLNLLWSLL  299 (302)
T ss_pred             -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCchhhHHHHHHHHhhhc
Confidence             321              1123334445555678999999999999999999999998887  88899999999998776


Q ss_pred             CC
Q 018202          353 SP  354 (359)
Q Consensus       353 s~  354 (359)
                      ..
T Consensus       300 ~~  301 (302)
T PF10186_consen  300 QA  301 (302)
T ss_pred             cC
Confidence            44

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=279.93  Aligned_cols=167  Identities=34%  Similarity=0.556  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCCCCCCCCCCCCCCCcceEEeccccCCCcccccccCCChhH
Q 018202          154 LQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKE  233 (359)
Q Consensus       154 lq~~L~~rr~~lv~qL~~IyPI~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~  233 (359)
                      ..+..+.|..++...+...|+|++..++.+      .+-+       ...+.|...|||||++||+.+.     +..+++
T Consensus       168 ~~~l~a~re~fL~~~~~~~~~irq~~~~~s------~i~~-------l~~~~~~~v~tIrGl~lp~~~d-----~~~~s~  229 (377)
T KOG2896|consen  168 RNELVAKRELFLEQRIQDTFKIRQDGSPLS------KILP-------LQFSYCHLVFTIRGLKLPFIED-----KQNKSE  229 (377)
T ss_pred             HHHHHHHHHhhHhHHHhhhhhhhccCcchh------eeec-------CCcccchhhhhhhcccCCchhh-----hhccch
Confidence            355667777888888999999998765421      0000       0111256789999999999652     223443


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCcccCCCchhhHH
Q 018202          234 VQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAA  313 (359)
Q Consensus       234 ~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~  313 (359)
                       ..++|||||+||||++||.||.+||+|||.+.||+|+|.|+++...|              ..|+||||.+++++.+|+
T Consensus       230 -~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~--------------ttr~fply~k~~~~e~f~  294 (377)
T KOG2896|consen  230 -QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET--------------TTREFPLYTKSQEIEQFE  294 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc--------------ccccccCccccchHHHHH
Confidence             56999999999999999999999999999999999999999987543              268999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHccC
Q 018202          314 YAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQS  353 (359)
Q Consensus       314 yaV~LLNknI~qL~~~~Gl~~~d~r~tL~NLk~Ll~~i~s  353 (359)
                      ||+|||||||+|||++||+++.++++||+||.+|+..+.-
T Consensus       295 ~glylL~qNiaqlr~~~gl~t~~ld~tl~~L~d~~~~~~~  334 (377)
T KOG2896|consen  295 YGLYLLNQNIAQLRYDCGLPTPDLDQTLDNLDDFIELLDD  334 (377)
T ss_pred             HHHHHHhccHHHHHHHcCCCCccHHHhhhhHHHHHHHhhh
Confidence            9999999999999999999999999999999999987653

>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]

Probab=99.62  E-value=9.1e-15  Score=138.33  Aligned_cols=160  Identities=21%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHH-hhhccceeeCCCCcc--------------------cccccCCCCCCCCCCCCCCCCCCcceEEecc-
Q 018202          158 LRMRQQFMISQV-SFLYPVKILVGPKQE--------------------QELESFPSGNRSGNSAASKPVNPGSLTILGL-  215 (359)
Q Consensus       158 L~~rr~~lv~qL-~~IyPI~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~~~~~~~~tI~Gl-  215 (359)
                      |+.-|+..+.|| ..||||..+.-+-.+                    ..-++|..|+|++..-++.   ...|.|-|. 
T Consensus        77 l~~lr~shi~el~s~ifpi~ev~~~~~~~~~~s~e~a~~s~tvs~laear~ttyl~grwv~~~~~~~---~i~~~i~gp~  153 (359)
T KOG4398|consen   77 LANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESAMTSSTVSKLAEARRTTYLSGRWVCDDHMSD---KINFIIPGPT  153 (359)
T ss_pred             HHHHHHHHHHHHHheeeeHHHHhhcccCcccchhhhhhhHHHHHHHHHhhccceecceEEEcCCCCc---ceeEEecCCc
Confidence            333444456665 899999977422111                    1334788999965442221   247999997 


Q ss_pred             -ccCCCccc-------------ccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeecCCCCCCC
Q 018202          216 -HLTILPFT-------------KMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEP  281 (359)
Q Consensus       216 -~LP~~~~~-------------~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D~i~~~~~  281 (359)
                       .||+..--             .++.-....++..|.+||.|++|||++||+||+|+||..+.+       .|++-.   
T Consensus       154 ~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~-------~dfC~e---  223 (359)
T KOG4398|consen  154 QSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVHLLSVILNVRLPEKLSH-------HDFCIE---  223 (359)
T ss_pred             ccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHHHHHHHhccCCchhhcc-------hhHHHH---
Confidence             78875311             000000112445799999999999999999999999999975       444421   


Q ss_pred             CCcccccccccCCCCCcccCcccCCCchhhHHHHHHHHHHHHHHHHHhcCCCC--CCccchHHHHHHHHHHccCC
Q 018202          282 TSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKS--LGPRHVLANLKELLRTIQSP  354 (359)
Q Consensus       282 ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV~LLNknI~qL~~~~Gl~~--~d~r~tL~NLk~Ll~~i~s~  354 (359)
                                              .=.+..|..+|.-||-||.+||.+||+.-  +-..|||.||-+|..+..++
T Consensus       224 ------------------------~ltke~f~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~~~~d  274 (359)
T KOG4398|consen  224 ------------------------RLTKESFNRDWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASFVVND  274 (359)
T ss_pred             ------------------------HhhHHHHHHHHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhhhHhh
Confidence                                    11568999999999999999999999765  45679999999999877653

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.06  E-value=3e-08  Score=97.62  Aligned_cols=99  Identities=25%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCCCCCCCCcccc
Q 018202          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (359)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~~~~~ss~~~~  287 (359)
                      -=||+|+.|.-.+..       .-+-..|+||+|++|.|+..||..+++.+ .|.+.|+||.|+|.+....         
T Consensus       150 fGTINGlRLGrl~~~-------~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~---------  213 (314)
T PF04111_consen  150 FGTINGLRLGRLPNV-------PVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD---------  213 (314)
T ss_dssp             EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred             eeeECCeeeccCCCC-------CCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence            347888888754311       12334699999999999999999999986 5999999999999988631         


Q ss_pred             cccccCCCCCcccCcccCCC-------chhhHHHHHHHHHHHHHHHHHhc
Q 018202          288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKDIEQLLNYI  330 (359)
Q Consensus       288 ~~~~~~~~~~r~fPLy~~~~-------d~~~F~yaV~LLNknI~qL~~~~  330 (359)
                             .....||||..+.       ...+|+-|+.-+=.-+.|++...
T Consensus       214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~  256 (314)
T PF04111_consen  214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV  256 (314)
T ss_dssp             --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence                   0346899998864       23589999888888888777544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=98.33  E-value=9.6e-05  Score=74.73  Aligned_cols=95  Identities=26%  Similarity=0.323  Sum_probs=69.6

Q ss_pred             EEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCC-CceeecCCcceeecCCCCCCCCCcccccc
Q 018202          211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSSNI  289 (359)
Q Consensus       211 tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLp-Ypi~~~gSrSyI~D~i~~~~~ss~~~~~~  289 (359)
                      ||.|++|.-.+...       -+-+.|+||+|=++.++..++.=+|+.+- |.+.|+||+|||.-.-.            
T Consensus       285 tIN~FRLG~lp~~p-------Vew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~------------  345 (447)
T KOG2751|consen  285 TINNFRLGRLPSVP-------VEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV------------  345 (447)
T ss_pred             ccccceeccccCCC-------cCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc------------
Confidence            57777775544211       12246999999999999999999999764 99999999999986642            


Q ss_pred             cccCCCCCcccCcccCCCc----hhhHHHHHHHHHHHHHHHHHh
Q 018202          290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKDIEQLLNY  329 (359)
Q Consensus       290 ~~~~~~~~r~fPLy~~~~d----~~~F~yaV~LLNknI~qL~~~  329 (359)
                           ..++++|||+.|+-    .++|+-|+-.-=-=+.|+...
T Consensus       346 -----~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e  384 (447)
T KOG2751|consen  346 -----NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADE  384 (447)
T ss_pred             -----CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHH
Confidence                 24789999998863    358888876655555555433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.91  E-value=9.8  Score=37.04  Aligned_cols=82  Identities=20%  Similarity=0.332  Sum_probs=66.6

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018202           41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS  120 (359)
Q Consensus        41 L~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~  120 (359)
                      +.+=++.|.++...+..++.+|+++...-.   +..+.+.+.+.+.+....-++++...+..+.+.+..|.+-|..+.|.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~---~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIE---EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556677788888888888888888877543   34556666777888888889999999999999999999999999998


Q ss_pred             HHHhc
Q 018202          121 LLVAG  125 (359)
Q Consensus       121 l~~~~  125 (359)
                      +-..|
T Consensus       110 mq~nG  114 (265)
T COG3883         110 MQVNG  114 (265)
T ss_pred             HHHcC
Confidence            77666

>PRK11637 AmiB activator; Provisional

Probab=92.88  E-value=13  Score=38.21  Aligned_cols=41  Identities=15%  Similarity=0.215  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018202           79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (359)
Q Consensus        79 l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir  119 (359)
                      +.+.+..++.....++.+..++..+.+++..+++.|...++
T Consensus        91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555566666666666666666666664

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=91.61  E-value=18  Score=39.80  Aligned_cols=31  Identities=39%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202           44 LSSALSQADDKKQTLQQKLQSLIQVKAESLK   74 (359)
Q Consensus        44 L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~   74 (359)
                      +..+|+++..+.+.|+.++..+...++...+
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq  488 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQ  488 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445888888888888888888887764443

; GO: 0016021 integral to membrane

>PRK10869 recombination and repair protein; Provisional

Probab=91.28  E-value=4.9  Score=42.83  Aligned_cols=19  Identities=21%  Similarity=0.191  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018202          105 EDAKNQEERLSMEVRSLLV  123 (359)
Q Consensus       105 ~~~~~rre~L~~~ir~l~~  123 (359)
                      +++-..++++..++..+..
T Consensus       320 ~~~~~~~~~l~~eL~~L~~  338 (553)
T PRK10869        320 EELPQHHQQLLEEQQQLDD  338 (553)
T ss_pred             HHHHHHHHHHHHHHHHhhC
Confidence            4444555555555544333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.87  E-value=10  Score=36.11  Aligned_cols=72  Identities=21%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202           44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLS  115 (359)
Q Consensus        44 L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~  115 (359)
                      +.+..++........+.+|+..-+.+.........+..-.+.++.....+++++..++....+++.+.+++.
T Consensus        26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566666666666666666655444444444443344444444444444444444444443333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=90.55  E-value=12  Score=40.57  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=19.8

Q ss_pred             HHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 018202          133 KRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV  169 (359)
Q Consensus       133 ~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL  169 (359)
                      .-+......+..|+...+-...+..|..+.+++|+.+
T Consensus       300 ~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       300 NLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444333333345666777777888766

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR00634 recN DNA repair protein RecN

Probab=90.51  E-value=8.1  Score=41.12  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhch
Q 018202          103 EKEDAKNQEERLSMEVRSLLVAGT  126 (359)
Q Consensus       103 ~~~~~~~rre~L~~~ir~l~~~~~  126 (359)
                      ..+++...+++++.++..+.....
T Consensus       323 s~e~l~~~~~~l~~eL~~l~~~~~  346 (563)
T TIGR00634       323 SVEEVLEYAEKIKEELDQLDDSDE  346 (563)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCHH
Confidence            345555566666666654444333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=90.03  E-value=10  Score=38.89  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             HHhHHHHHHHHHHHHHHhcCCCCCC
Q 018202          237 SATALGYIAHVVSLIASYLEVPLRY  261 (359)
Q Consensus       237 isaALGyvAhlv~lls~yL~vpLpY  261 (359)
                      |+..|..++-++.++|..+++|+|+
T Consensus       344 inllL~l~~vlLv~vSt~~~~~~Pl  368 (395)
T PF10267_consen  344 INLLLTLLTVLLVFVSTVANCPLPL  368 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            6777888888888888888887663

Its function is unknown.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=89.61  E-value=14  Score=42.59  Aligned_cols=39  Identities=10%  Similarity=0.147  Sum_probs=24.4

Q ss_pred             hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202           32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA   70 (359)
Q Consensus        32 ~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~   70 (359)
                      .+++..+++|.|.+..|+.....+++.+.-...+-..++
T Consensus      1518 ~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~ 1556 (1758)
T KOG0994|consen 1518 GEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARS 1556 (1758)
T ss_pred             HHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            456667777788877777776666555544444444443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.47  E-value=20  Score=34.11  Aligned_cols=42  Identities=31%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 018202           75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM  116 (359)
Q Consensus        75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~  116 (359)
                      ...++...+.+++..+..++..+.++...++.++.++..|..
T Consensus        68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~  109 (302)
T PF10186_consen   68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSA  109 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566667777777777777777777888888877773

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=88.44  E-value=42  Score=37.05  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202           39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE   71 (359)
Q Consensus        39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~   71 (359)
                      .++.+|..+.+.=+.....||+++.+....+..
T Consensus       474 ~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~  506 (697)
T PF09726_consen  474 NKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS  506 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999888888889999998887776654

; GO: 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=87.91  E-value=32  Score=34.56  Aligned_cols=15  Identities=7%  Similarity=0.082  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHhhh
Q 018202          158 LRMRQQFMISQVSFL  172 (359)
Q Consensus       158 L~~rr~~lv~qL~~I  172 (359)
                      |..-|....+.|..+
T Consensus       192 l~~~~~~~~~~l~~~  206 (343)
T PRK09039        192 LNRYRSEFFGRLREI  206 (343)
T ss_pred             HHHhHHHHHHHHHHH
Confidence            344444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.55  E-value=31  Score=34.14  Aligned_cols=14  Identities=21%  Similarity=0.192  Sum_probs=8.7

Q ss_pred             HHHHhhhccceeeC
Q 018202          166 ISQVSFLYPVKILV  179 (359)
Q Consensus       166 v~qL~~IyPI~~~~  179 (359)
                      +..|..+.+++...
T Consensus       285 ~~~Le~~~gw~~~~  298 (325)
T PF08317_consen  285 VDALEKLTGWKIVS  298 (325)
T ss_pred             HHHHHHHHCcEEEE
Confidence            55566677777653

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]

Probab=86.28  E-value=41  Score=34.21  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHH-HHhcCCCCCCceeecCCcceeecCCCC--CCCCCcccccccccCCCCCcccCcccCCCchhhHHHHH
Q 018202          240 ALGYIAHVVSLI-ASYLEVPLRYPLRLGGSHTYINDYAPS--IEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAV  316 (359)
Q Consensus       240 ALGyvAhlv~ll-s~yL~vpLpYpi~~~gSrSyI~D~i~~--~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV  316 (359)
                      =|.|..|++..+ -.=|-.|+-|.-...--.-+|.|-.+.  ..|--      +-+......+|++|..+++-.+|-|.+
T Consensus       238 ylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~ttr~fply------~k~~~~e~f~~glylL~qNiaqlr~~~  311 (377)
T KOG2896|consen  238 YLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIETTTREFPLY------TKSQEIEQFEYGLYLLNQNIAQLRYDC  311 (377)
T ss_pred             HHHHHHHHHHHHhccccccccccccccceecccCCccccccccccCc------cccchHHHHHHHHHHHhccHHHHHHHc
Confidence            344555555433 333566666544333333344444431  00000      011223567899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHccCCCC
Q 018202          317 FLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEY  356 (359)
Q Consensus       317 ~LLNknI~qL~~~~Gl~~~d~r~tL~NLk~Ll~~i~s~~~  356 (359)
                      +|.+.|+.+.+.           +|.|...++..+....+
T Consensus       312 gl~t~~ld~tl~-----------~L~d~~~~~~~~e~~~~  340 (377)
T KOG2896|consen  312 GLPTPDLDQTLD-----------NLDDFIELLDDIEDINH  340 (377)
T ss_pred             CCCCccHHHhhh-----------hHHHHHHHhhhhhhccc
Confidence            999999988653           56677766666655443

>TIGR01069 mutS2 MutS2 family protein

Probab=86.18  E-value=31  Score=38.49  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             HHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 018202           35 DQELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER  113 (359)
Q Consensus        35 ~~~l~rL~~L~~~-iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~  113 (359)
                      =-.+++...|... |+.|..-......+++.+|+.-.+   ...++++..+.++..+..+++...+.+...+++++++++
T Consensus       485 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~---~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~  561 (771)
T TIGR01069       485 AFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA---LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN  561 (771)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346777777655 777888778888888888886532   223333333444444444444444444444444444444


Q ss_pred             HH
Q 018202          114 LS  115 (359)
Q Consensus       114 L~  115 (359)
                      +.
T Consensus       562 ~~  563 (771)
T TIGR01069       562 KK  563 (771)
T ss_pred             HH
Confidence            33

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK12704 phosphodiesterase; Provisional

Probab=84.47  E-value=60  Score=34.53  Aligned_cols=11  Identities=18%  Similarity=0.108  Sum_probs=5.0

Q ss_pred             hHHHHHHHHHH
Q 018202          311 RAAYAVFLLNK  321 (359)
Q Consensus       311 ~F~yaV~LLNk  321 (359)
                      ....|..+|.+
T Consensus       382 H~~iGa~il~~  392 (520)
T PRK12704        382 HVEIGAELAKK  392 (520)
T ss_pred             HHHHHHHHHHH
Confidence            44445554443

>PRK09039 hypothetical protein; Validated

Probab=84.19  E-value=49  Score=33.23  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 018202           44 LSSALSQADDKKQTLQQKLQS   64 (359)
Q Consensus        44 L~~~iq~a~~~~~~L~~qI~~   64 (359)
                      |+..|..-..+.+.|+.+|.+
T Consensus        44 Ls~~i~~~~~eL~~L~~qIa~   64 (343)
T PRK09039         44 LSREISGKDSALDRLNSQIAE   64 (343)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            344455555555555555554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=83.87  E-value=69  Score=34.73  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 018202           46 SALSQADDKKQTLQQKLQSLIQ   67 (359)
Q Consensus        46 ~~iq~a~~~~~~L~~qI~~~le   67 (359)
                      ..+.+...+...++.+|+.+=+
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~  412 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDK  412 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555544443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.49  E-value=20  Score=39.61  Aligned_cols=19  Identities=16%  Similarity=0.382  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 018202           48 LSQADDKKQTLQQKLQSLI   66 (359)
Q Consensus        48 iq~a~~~~~~L~~qI~~~l   66 (359)
                      |.....-++.++.+++.+-
T Consensus       553 i~~~~~ar~ei~~rv~~Lk  571 (717)
T PF10168_consen  553 IEKQDLAREEIQRRVKLLK  571 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.51  E-value=48  Score=31.87  Aligned_cols=8  Identities=13%  Similarity=-0.068  Sum_probs=3.9

Q ss_pred             EeccccCC
Q 018202          212 ILGLHLTI  219 (359)
Q Consensus       212 I~Gl~LP~  219 (359)
                      =|++.||.
T Consensus       202 GC~m~l~~  209 (239)
T COG1579         202 GCHMKLPS  209 (239)
T ss_pred             CCeeeecH
Confidence            34455554

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.19  E-value=49  Score=31.79  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=20.4

Q ss_pred             hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202           33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA   70 (359)
Q Consensus        33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~   70 (359)
                      .++..+-||.-.-..+++++.+.......+++.++...
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~   51 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALE   51 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.39  E-value=59  Score=32.20  Aligned_cols=6  Identities=17%  Similarity=0.944  Sum_probs=3.9

Q ss_pred             hhhhHH
Q 018202           31 WEDYDQ   36 (359)
Q Consensus        31 ~~~~~~   36 (359)
                      |++.+.
T Consensus       139 WYeWR~  144 (325)
T PF08317_consen  139 WYEWRM  144 (325)
T ss_pred             HHHHHH
Confidence            777664

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.28  E-value=74  Score=33.27  Aligned_cols=54  Identities=15%  Similarity=0.310  Sum_probs=29.6

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018202           40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM   93 (359)
Q Consensus        40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~   93 (359)
                      ++..|.+-+++...+.+.++..|..+-+......+....+.+.+..+...+..+
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i  353 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL  353 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566677777777777777777555544433334444444444444333333

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=81.11  E-value=38  Score=37.80  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=20.5

Q ss_pred             HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 018202           36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVK   69 (359)
Q Consensus        36 ~~l~rL~~L~~~-iq~a~~~~~~L~~qI~~~le~~   69 (359)
                      ..+++...+... |..|..-...=..+++.+|+..
T Consensus       491 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l  525 (782)
T PRK00409        491 FEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASL  525 (782)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            346677777655 5666655555555666666653

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=80.97  E-value=69  Score=32.71  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=13.2

Q ss_pred             ccchhhhHHHHHHHhc
Q 018202           28 VIEWEDYDQELARLWS   43 (359)
Q Consensus        28 ~~~~~~~~~~l~rL~~   43 (359)
                      -++|+++-..+.||.+
T Consensus       226 ~vsld~L~~~ltrL~~  241 (370)
T PLN03094        226 GVSLDELVGICTRLAR  241 (370)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3779999988888776

>TIGR01069 mutS2 MutS2 family protein

Probab=80.51  E-value=35  Score=38.02  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018202           75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS  120 (359)
Q Consensus        75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~  120 (359)
                      .+.++.+.+..++.....+++.+.+.++..++++.+.++|..+.+.
T Consensus       516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~  561 (771)
T TIGR01069       516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN  561 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555666666666666665555543

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=80.24  E-value=86  Score=33.34  Aligned_cols=7  Identities=14%  Similarity=-0.055  Sum_probs=3.1

Q ss_pred             HHHHHHH
Q 018202          313 AYAVFLL  319 (359)
Q Consensus       313 ~yaV~LL  319 (359)
                      .+|..+|
T Consensus       378 ~~Ga~ll  384 (514)
T TIGR03319       378 EIGAELA  384 (514)
T ss_pred             HHHHHHH
Confidence            3444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 59/405 (14%), Positives = 120/405 (29%), Gaps = 111/405 (27%)

Query: 29  IEW------EDYDQELARLWSLSSAL-----SQAD------DKKQTLQQKLQSLIQVK-- 69
           I W         +  L  L  L   +     S++D       +  ++Q +L+ L++ K  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 70  AESL------KRSNELEEM----------RERLEARRLLMEKMSMRSKVEKEDAKNQEER 113
              L      + +                R +     L     +  S          +E 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 114 -------LSMEVRSL--LVAGT---ALSVARKRLQE-SNRLLAGEKGYGHLQ--KLQKML 158
                  L    + L   V  T    LS+  + +++           + H+   KL  ++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKHVNCDKLTTII 359

Query: 159 R----------MRQQFM---ISQVSFLYPVKILV---GPKQEQELESFPSGNRSGNSAAS 202
                       R+ F    +   S   P  +L        + ++    +      S   
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVE 418

Query: 203 KPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY- 261
           K     +++I  ++L            + K    +  AL    H  S++  Y  +P  + 
Sbjct: 419 KQPKESTISIPSIYL------------ELKVKLENEYAL----H-RSIVDHY-NIPKTFD 460

Query: 262 -----PLRLGG-SHTYINDYAPSIEPT--SDLSSNIALSTNTKPAEFPLFLEG---QDAT 310
                P  L    +++I  +  +IE      L   + L           FLE     D+T
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--------FLEQKIRHDST 512

Query: 311 RAAYAVFLLN--KDIEQLLNYIGVKSLGPRHVLANLKELLRTIQS 353
               +  +LN  + ++    YI         ++  + + L  I+ 
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 45/350 (12%), Positives = 106/350 (30%), Gaps = 103/350 (29%)

Query: 21  IDPENVKVIEWEDYDQELARLWSLSSALSQAD----DKKQTLQQKLQSLI---------- 66
             P     +    Y ++  RL++ +   ++ +         L+Q L  L           
Sbjct: 103 RQPS----MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 67  -----QVKAESLKRSNELEEMRERLEARRLLMEK----MSMRSKVEKEDAKNQEERLSME 117
                   A  +  S +++            M+     +++++    E      ++L  +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCK----------MDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 118 VRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKI 177
           +     + +  S   K    S +            +L+++L+ +           Y   +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKP----------YENCL 247

Query: 178 LV--GPKQEQELESFPSGNR----SGNSAASKPVNPGSLTILGLHLTILPFTK---MSLF 228
           LV    +  +   +F    +    +     +  ++  + T + L    +  T     SL 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 229 -----TDKKEVQRSATALGYIAHVVSLIASYL-EVPLRYPLRLGGSHTYINDYAPSIEPT 282
                   +++ R           +S+IA  + +    +            D    +   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATW------------DNWKHVN-C 352

Query: 283 SDLSSNIALSTNT-KPAEFPLFLEGQDATRAAY---AVFLLNKDI-EQLL 327
             L++ I  S N  +PAE+          R  +   +VF  +  I   LL
Sbjct: 353 DKLTTIIESSLNVLEPAEY----------RKMFDRLSVFPPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 51/329 (15%), Positives = 99/329 (30%), Gaps = 98/329 (29%)

Query: 19  KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
              +P  + +I  E     LA  W         D+ K     KL ++I+     L    E
Sbjct: 323 LTTNPRRLSII-AESIRDGLAT-W---------DNWKHVNCDKLTTIIESSLNVL----E 367

Query: 79  LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM--------EVRSLLVAGTALSV 130
             E R+  +   +               A      LS+        +V  ++      S+
Sbjct: 368 PAEYRKMFDRLSVFP-----------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 131 ARKRLQESNRLLAGEKGYG-HLQKLQKMLRMRQ--QFMISQVSFLYPVKILVGPKQEQEL 187
             K+ +ES   +        +L+   K+       + ++      Y              
Sbjct: 417 VEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDH----Y-----------NIP 456

Query: 188 ESFPSGNRSGNSAASKPVNPG-SLTILGLHL-TILPFTKMSLFTD--------KKEVQRS 237
           ++F S +         P       + +G HL  I    +M+LF          +++++  
Sbjct: 457 KTFDSDDL------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 238 ATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEP-TSDL-------SSN 288
           +TA      +++ +       L+ Y         YI D  P  E   + +         N
Sbjct: 511 STAWNASGSILNTLQQ-----LKFY-------KPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 289 IALSTNTKPAEFPLFLEG----QDATRAA 313
           +  S  T      L  E     ++A +  
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 36   QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95
             E   +          ++K   LQ+K+    +     L++ N LE        +     +
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 96   MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG--EKGYGHLQK 153
                S+ E ++A N+   L  E+  L          +K ++E         E+    L++
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 154  LQKMLRMRQQFMISQV 169
               +L+  ++ +  ++
Sbjct: 1031 QNTLLKTEKEELNRRI 1046

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
4ddp_A	210	Beclin-1; ECD, autophagy, membrane binding, membra	98.76
3vp7_A	220	Vacuolar protein sorting-associated protein 30; ta	98.53
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	87.88
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.24
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	80.05

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}

Probab=98.76  E-value=2.5e-08  Score=91.28  Aligned_cols=97  Identities=23%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCCCCCCCCcccc
Q 018202          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (359)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~~~~~ss~~~~  287 (359)
                      -=||.|+.|.-.+..    .   -+-.+|+||+|++|.|+..||..+++.+ +|.+.|+||.|+|.+...          
T Consensus        42 fgtINglRLGrlp~~----~---V~W~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~----------  104 (210)
T 4ddp_A           42 FGTINNFRLGRLPSV----P---VEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD----------  104 (210)
T ss_dssp             EEEETTEECCCBTTB----C---CCHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred             ceeEcccccCCCCCC----C---CCHHHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence            457999988776421    1   1223699999999999999999999999 799999999999987642          


Q ss_pred             cccccCCCCCcccCcccCCCc----hhhHHHHHHHHHHHHHHHHHhc
Q 018202          288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKDIEQLLNYI  330 (359)
Q Consensus       288 ~~~~~~~~~~r~fPLy~~~~d----~~~F~yaV~LLNknI~qL~~~~  330 (359)
                              ....||||..+.-    ..+|+-|+--+-.-+.|++...
T Consensus       105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~  143 (210)
T 4ddp_A          105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV  143 (210)
T ss_dssp             --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence                    2357999987642    2599999999999999998776

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.8e-07  Score=86.07  Aligned_cols=109  Identities=20%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCC-CCCCCCccc
Q 018202          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS  286 (359)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~-~~~~ss~~~  286 (359)
                      -=||.|+.|.-.+...       -+-.+|+||+|++|.|+..||..|++.+ .|.+.|+||.|+|.+... ..+- .+. 
T Consensus        16 fgTINglRLGrl~~~~-------V~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~-~~~-   86 (220)
T 3vp7_A           16 FATINGLRLGSIPESV-------VPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY-NNS-   86 (220)
T ss_dssp             EEEETTEEECCBTTBC-------CCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred             ceeEcccccCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc-ccc-
Confidence            4579999888664211       1223599999999999999999999999 599999999999998421 1000 000 


Q ss_pred             ccccccCCCCCcccCcccCCC--------chhhHHHHHHHHHHHHHHHHHh
Q 018202          287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKDIEQLLNY  329 (359)
Q Consensus       287 ~~~~~~~~~~~r~fPLy~~~~--------d~~~F~yaV~LLNknI~qL~~~  329 (359)
                      +.   ........||||..+.        -..+|+-|+--+=.-|.|+...
T Consensus        87 ~~---~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~  134 (220)
T 3vp7_A           87 TT---NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ  134 (220)
T ss_dssp             ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cc---ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence            00   0011346799998864        1259999999888888888773

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=87.88  E-value=10  Score=31.03  Aligned_cols=86  Identities=13%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             CCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018202           24 ENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVE  103 (359)
Q Consensus        24 ~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~  103 (359)
                      +.+.-+..+++..   +|.....+|.+-....+.|..+|..    ..+.   ...++.++..++.    -...-...|.+
T Consensus        19 ~~~~~~ei~~L~~---~L~~AEeaL~~Kq~~idelk~ei~q----~~~~---lE~I~vLkaQv~I----Y~~DF~aERad   84 (110)
T 2v4h_A           19 SHMASMQLEDLRQ---QLQQAEEALVAKQELIDKLKEEAEQ----HKIV---METVPVLKAQADI----YKADFQAERHA   84 (110)
T ss_dssp             CCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH----HHHHHccchhh
Confidence            3444455677775   5555555555555555555554433    2222   2334444444432    22333346777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018202          104 KEDAKNQEERLSMEVRSLLV  123 (359)
Q Consensus       104 ~~~~~~rre~L~~~ir~l~~  123 (359)
                      ++.+..++++|..+++.|..
T Consensus        85 REkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           85 REKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHH
Confidence            88888888888888865543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.24  E-value=17  Score=28.12  Aligned_cols=25  Identities=28%  Similarity=0.310  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202           44 LSSALSQADDKKQTLQQKLQSLIQV   68 (359)
Q Consensus        44 L~~~iq~a~~~~~~L~~qI~~~le~   68 (359)
                      |..=|++|..+..-|+-.|+++=+.
T Consensus        11 LE~KIq~avdtI~lLqmEieELKek   35 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEK   35 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=80.05  E-value=50  Score=41.00  Aligned_cols=13  Identities=15%  Similarity=0.514  Sum_probs=9.7

Q ss_pred             CCcccCcccCCCc
Q 018202          296 KPAEFPLFLEGQD  308 (359)
Q Consensus       296 ~~r~fPLy~~~~d  308 (359)
                      ..+.|||..|.+.
T Consensus      2182 ~~~R~PLlIDPq~ 2194 (3245)
T 3vkg_A         2182 RFNRYPLVIDPSG 2194 (3245)
T ss_dssp             SCSSCEEEECTTS
T ss_pred             cCCCceEEEChHH
Confidence            3578999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00