Citrus Sinensis ID: 018235
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| Q54ED4 | 482 | Glutamate-rich WD repeat- | yes | no | 0.785 | 0.585 | 0.456 | 1e-63 | |
| Q9BQ67 | 446 | Glutamate-rich WD repeat- | yes | no | 0.818 | 0.659 | 0.432 | 3e-60 | |
| Q810D6 | 446 | Glutamate-rich WD repeat- | yes | no | 0.791 | 0.636 | 0.437 | 5e-58 | |
| Q5XI13 | 445 | Glutamate-rich WD repeat- | yes | no | 0.788 | 0.635 | 0.427 | 1e-56 | |
| Q1JQD2 | 446 | Glutamate-rich WD repeat- | yes | no | 0.782 | 0.630 | 0.425 | 4e-56 | |
| Q9P783 | 480 | Ribosome assembly protein | yes | no | 0.749 | 0.560 | 0.383 | 1e-48 | |
| Q04225 | 511 | Ribosome assembly protein | yes | no | 0.721 | 0.506 | 0.317 | 3e-33 | |
| P0CS36 | 435 | Histone acetyltransferase | no | no | 0.693 | 0.572 | 0.274 | 3e-20 | |
| P0CS37 | 435 | Histone acetyltransferase | N/A | no | 0.693 | 0.572 | 0.274 | 3e-20 | |
| Q54SD4 | 423 | Probable histone-binding | no | no | 0.484 | 0.411 | 0.333 | 3e-19 |
| >sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/298 (45%), Positives = 185/298 (62%), Gaps = 16/298 (5%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++PHT Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152
VAGTQA++ N + + K + + + + D +D + + DED D D
Sbjct: 128 VAGTQADEAKNNKVIIMKAKQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVD----- 182
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P LQL + H G VNRIR+M Q +I A+W+D V +W++ +HL AL ++ET+
Sbjct: 183 --PELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETV---- 235
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
AP+ + +PL H EGYA+DW+P GRL TGDCN+ I++ AS++TW D F
Sbjct: 236 APKQT--APLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFV-TNASESTWKTDTQAF 292
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330
GH+ SVED+QWSP+E VFASCS+D + IWD R K A+T KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAIT-VKAHTADVNVISWSR 349
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9BQ67|GRWD1_HUMAN Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/319 (43%), Positives = 179/319 (56%), Gaps = 25/319 (7%)
Query: 18 AKKGDGSSSSSIPSLPTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVR 76
A+ GD SS P +V+ PG L EGEEL D AY H G PCLSFDIVR
Sbjct: 19 AESGDTSSEG-----PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVR 73
Query: 77 DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSE 136
D LG R E P T Y AGTQAE N + + ++ N+ G KP SE
Sbjct: 74 DHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG-------TKPP------PSE 120
Query: 137 SSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWD 194
SD +E+ +D+E+ P L+L V H G +NR+R + + P + W++ G V+V+
Sbjct: 121 GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFA 179
Query: 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCI 254
LR L + E + + + + P+ F GH EG+A+DW+P TGRL+TGDC I
Sbjct: 180 LRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNI 239
Query: 255 YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--- 311
+LW P +W+VD PF+GH+ SVEDLQWSPTE VFASCS D I IWD R S
Sbjct: 240 HLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKAC 299
Query: 312 ALTSFKAHNADVNVISWNR 330
LT+ AH+ DVNVISW+R
Sbjct: 300 MLTTATAHDGDVNVISWSR 318
|
Homo sapiens (taxid: 9606) |
| >sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 176/304 (57%), Gaps = 20/304 (6%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
AGTQAE N + + ++ N+ G R PS SE SD DE+ +D+E+
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTR-------PS------PSEGSDDDEEDEDEEDEE 135
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 136 EQKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 194
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC ++LW P +WNVD
Sbjct: 195 IFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQ 254
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKS-ALTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 255 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVI 314
Query: 327 SWNR 330
SW+R
Sbjct: 315 SWSR 318
|
Mus musculus (taxid: 10090) |
| >sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 175/304 (57%), Gaps = 21/304 (6%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
AGTQAE N + + ++ N+ G R P++ S+D++D D E + +
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGSDDEDDEDEEDEEERK--------- 137
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 ---PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 193
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +WNVD
Sbjct: 194 IFLRDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQ 253
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKS-ALTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 254 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVI 313
Query: 327 SWNR 330
SW+R
Sbjct: 314 SWSR 317
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q1JQD2|GRWD1_BOVIN Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 170/301 (56%), Gaps = 20/301 (6%)
Query: 35 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFV 93
+V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P T Y
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 94 AGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSG 153
AGTQAE N + + ++ N+ G + P P E SD +E+ DD+E+
Sbjct: 91 AGTQAESSQSNRLMMLRMHNLHGTK----PPPP---------EGSDDEEEEDDEEDEEER 137
Query: 154 TPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 KPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATF 196
Query: 212 GAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP 271
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD P
Sbjct: 197 LRDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRP 256
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISW 328
F+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W
Sbjct: 257 FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINW 316
Query: 329 N 329
+
Sbjct: 317 S 317
|
Bos taurus (taxid: 9913) |
| >sp|Q9P783|RRB1_SCHPO Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/305 (38%), Positives = 168/305 (55%), Gaps = 36/305 (11%)
Query: 33 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P+K+ W PG K+ E+L DP+ Y LH + WP LSFDI++D+LG R +PH Y
Sbjct: 70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMY 128
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
V G+QA + N + V K+S + K +D+ D S++SD +ED
Sbjct: 129 LVGGSQALDSNDNELTVMKLSQLY---------KTQHDENDDASDNSDVEED-------- 171
Query: 152 SGTPILQLRKVAHQGCVNRIR-----AMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
PIL+ + ++ +G NR+R A + + AS+ +TG V +WD+ HL +L
Sbjct: 172 ---PILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPG 228
Query: 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN 266
+V + SPL HK EGYA+DW+P L++GD + I+L S+ W
Sbjct: 229 VMVSR-----KENSPLYTVNRHKTEGYALDWSPFEYS-LLSGDNANEIFL-TKYSNGGWQ 281
Query: 267 VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVN 324
D +PF+ H+A+VEDLQWSP+E +VF+SCS DG IWD R + SALT DVN
Sbjct: 282 TDSSPFLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVN 341
Query: 325 VISWN 329
V+SWN
Sbjct: 342 VLSWN 346
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 152/290 (52%), Gaps = 31/290 (10%)
Query: 48 EELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIG 107
E L+ DPT Y LH ++ WPCL+ D++ DTLG R +P + TQ+ + N +
Sbjct: 109 EVLEADPTVYEMLHNVNMPWPCLTLDVIPDTLGSERRNYPQSILLTTATQSSRKKENELM 168
Query: 108 VFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167
V +SN++ + L+ D++ + D++++ P+++ + +
Sbjct: 169 VLALSNLA---KTLL--------------KDDNEGEDDEEDDEDDVDPVIENENIPLRDT 211
Query: 168 VNRIR----AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
NR++ A++ + A+ ++ G V +++L A + G P+ S + P+
Sbjct: 212 TNRLKVSPFAISNQEVLTATMSENGDVYIYNLAPQSKAFSTP----GYQIPK-SAKRPIH 266
Query: 224 KFGGHKD-EGYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVE 280
H + EGY +DW+P I TG L++GDC+ IY + + + W D PF + ++ S+E
Sbjct: 267 TVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQIYFTQRHT-SRWVTDKQPFTVSNNKSIE 325
Query: 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWN 329
D+QWS TE VFA+ DG+I IWDTR K S KA N DVNVISW+
Sbjct: 326 DIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWS 375
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P0CS36|HAT2_CRYNJ Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=HAT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 35/284 (12%)
Query: 54 PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSN 113
P Y+++ + WP L+ + D + ++ + + GT + + + + +V
Sbjct: 37 PFLYDTVITHALTWPSLTCQWLPDITDVPDTDYT-SQRLIIGTHTSGQANDHLIIAEV-- 93
Query: 114 ISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTP----ILQLRKVAHQGCVN 169
L+P K + S+ + +D ++ +E GS T I ++ + H G VN
Sbjct: 94 -------LLPKKGAGI-----SDKALADLYDEEKQEIGSYTASPARIRAIQTINHAGEVN 141
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R R M QNP + A+ TG V V+D H ES+ AP P ++ G
Sbjct: 142 RARYMPQNPELIATKTVTGEVYVFDRTKH-----ESK------APANGECKPDIRLKGQT 190
Query: 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP---FIGHSASVEDLQWSP 286
EGY + WN + G +++ ++ I W+ + + P + GHSA V D++W P
Sbjct: 191 KEGYGLSWNALKEGHILSASEDTTIGHWDIQGYSKQDPSLQPLRLYTGHSAYVADVEWHP 250
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISW 328
++F S S DG I IWDTR +A S + HNA++N IS+
Sbjct: 251 KNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISF 294
|
Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS37|HAT2_CRYNB Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=HAT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 35/284 (12%)
Query: 54 PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSN 113
P Y+++ + WP L+ + D + ++ + + GT + + + + +V
Sbjct: 37 PFLYDTVITHALTWPSLTCQWLPDITDVPDTDYT-SQRLIIGTHTSGQANDHLIIAEV-- 93
Query: 114 ISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTP----ILQLRKVAHQGCVN 169
L+P K + S+ + +D ++ +E GS T I ++ + H G VN
Sbjct: 94 -------LLPKKGAGI-----SDKALADLYDEEKQEIGSYTASPARIRAIQTINHAGEVN 141
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R R M QNP + A+ TG V V+D H ES+ AP P ++ G
Sbjct: 142 RARYMPQNPELIATKTVTGEVYVFDRTKH-----ESK------APANGECKPDIRLKGQT 190
Query: 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP---FIGHSASVEDLQWSP 286
EGY + WN + G +++ ++ I W+ + + P + GHSA V D++W P
Sbjct: 191 KEGYGLSWNALKEGHILSASEDTTIGHWDIQGYSKQDPSLQPLRLYTGHSAYVADVEWHP 250
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISW 328
++F S S DG I IWDTR +A S + HNA++N IS+
Sbjct: 251 KNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISF 294
|
Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|Q54SD4|RBBD_DICDI Probable histone-binding protein rbbD OS=Dictyostelium discoideum GN=rbbD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 143 DSDDDEEGGSGT---PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSH- 198
D E GG G I ++K+ H+G VNR R M QN I A+ + V ++D H
Sbjct: 96 DDTKGEVGGIGNVSEKIEIIQKINHEGEVNRARVMPQNHSIIATKTVSSEVYIFDTTKHP 155
Query: 199 LNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258
L + + SP +K GHK EGY I WNP G L++ + I +W+
Sbjct: 156 LEPTPDGKC------------SPNLKLTGHKKEGYGISWNPRKEGHLLSCSDDQSICMWD 203
Query: 259 PA----SDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
+ SD+T + N + GH++ VED+ W F S D + IWDTR G +
Sbjct: 204 ISAASKSDSTLDA-LNIYNGHTSIVEDVAWHYIHDTFFGSVGDDKKLMIWDTRTGTKPIH 262
Query: 315 SFKAHNADVNVISWN 329
+AHN++VN +S+N
Sbjct: 263 VVEAHNSEVNCLSFN 277
|
Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 225444932 | 474 | PREDICTED: glutamate-rich WD repeat-cont | 0.924 | 0.700 | 0.810 | 1e-152 | |
| 255573609 | 476 | WD-repeat protein, putative [Ricinus com | 0.910 | 0.686 | 0.769 | 1e-141 | |
| 449435854 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.927 | 0.701 | 0.735 | 1e-133 | |
| 356512379 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.922 | 0.696 | 0.764 | 1e-130 | |
| 224081134 | 443 | predicted protein [Populus trichocarpa] | 0.774 | 0.627 | 0.765 | 1e-129 | |
| 449532697 | 465 | PREDICTED: glutamate-rich WD repeat-cont | 0.899 | 0.694 | 0.720 | 1e-126 | |
| 356525166 | 472 | PREDICTED: LOW QUALITY PROTEIN: glutamat | 0.913 | 0.694 | 0.704 | 1e-125 | |
| 224093750 | 415 | predicted protein [Populus trichocarpa] | 0.793 | 0.686 | 0.734 | 1e-120 | |
| 297836302 | 470 | transducin family protein [Arabidopsis l | 0.860 | 0.657 | 0.689 | 1e-119 | |
| 15224798 | 469 | transducin-like protein [Arabidopsis tha | 0.857 | 0.656 | 0.692 | 1e-117 |
| >gi|225444932|ref|XP_002282252.1| PREDICTED: glutamate-rich WD repeat-containing protein 1 [Vitis vinifera] gi|297738673|emb|CBI27918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/337 (81%), Positives = 303/337 (89%), Gaps = 5/337 (1%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKNPKKAKRKNK +KKG+GSSS +PSLPTKVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MVRSIKNPKKAKRKNKGSKKGEGSSS--VPSLPTKVWQPGVDKLEEGEELQCDPSAYNSL 58
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFH+GWPCLSFDIVRD+LGLVR+EFPHTAYFVAGTQAEK SWNSIG+FK+SNISGK+RE
Sbjct: 59 HAFHVGWPCLSFDIVRDSLGLVRSEFPHTAYFVAGTQAEKASWNSIGIFKLSNISGKKRE 118
Query: 121 LVPN-KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPH 179
LVP K + DD D+D + SDSDEDS+++E+GGSGTPILQ+RKVAH+GCVNRIRAMTQNPH
Sbjct: 119 LVPTTKSTGDDSDMDGDGSDSDEDSENEEDGGSGTPILQMRKVAHEGCVNRIRAMTQNPH 178
Query: 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
ICASWADTGHVQVWD SHLNALAESET QG+ NQ+PLVKFGGHKDEGYAIDW+P
Sbjct: 179 ICASWADTGHVQVWDFSSHLNALAESETDANQGSTPAINQAPLVKFGGHKDEGYAIDWSP 238
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ G+LVTGDC +CIYLWEP SDATW VD NPFIGH+ASVEDLQWSPTE VFASCSVDG
Sbjct: 239 VVPGKLVTGDCKNCIYLWEPTSDATWKVDTNPFIGHTASVEDLQWSPTEVHVFASCSVDG 298
Query: 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336
+IAIWDTR+G+S SFKAHNADVNV+SWNR LA C
Sbjct: 299 NIAIWDTRLGRSPAASFKAHNADVNVLSWNR--LASC 333
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573609|ref|XP_002527727.1| WD-repeat protein, putative [Ricinus communis] gi|223532868|gb|EEF34640.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/330 (76%), Positives = 287/330 (86%), Gaps = 3/330 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKNPKKAKRKNK +K+GD +SSSSIP++PTKVWQPGVDKLEEGEEL+CDP+AYNSL
Sbjct: 1 MVRSIKNPKKAKRKNKGSKQGD-ASSSSIPTMPTKVWQPGVDKLEEGEELECDPSAYNSL 59
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
H FHIGWPCLSFDIV D LGL+R EFPHT YFVAGTQA+K S N+IG+FKVSNISGKRRE
Sbjct: 60 HGFHIGWPCLSFDIVHDKLGLLRTEFPHTVYFVAGTQADKASSNTIGIFKVSNISGKRRE 119
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
LVP K ++ D ++D++SSDSDEDS+D+E GGS P+LQ+R VAHQGCVNRIRAM QNPHI
Sbjct: 120 LVPAKTTDGDAEIDTDSSDSDEDSEDEEHGGSRAPVLQIRNVAHQGCVNRIRAMAQNPHI 179
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CASWADTGHVQ+WD SHLNAL+ESE QG P NQ+PLVKFGGHKDEGYAIDW+P
Sbjct: 180 CASWADTGHVQIWDFSSHLNALSESEAD-RQGGPSAVNQAPLVKFGGHKDEGYAIDWSPR 238
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
TGRLV+GDC +CI+LWEP S ATWNV PF+GH+ASVEDLQWSPTE VFASCSVDG
Sbjct: 239 VTGRLVSGDCKNCIHLWEP-SGATWNVGSVPFVGHAASVEDLQWSPTEDAVFASCSVDGS 297
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNR 330
IAIWD R+G++ SFKAHNADVNVISWNR
Sbjct: 298 IAIWDIRLGRTPAISFKAHNADVNVISWNR 327
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435854|ref|XP_004135709.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/336 (73%), Positives = 278/336 (82%), Gaps = 3/336 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKN KKAKRK+K + G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSL
Sbjct: 1 MVRSIKNRKKAKRKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSL 60
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAF+I WP LSFDIVRDTLGLVR EFPHT YFVAGTQAEK SWNSIG++K+SNISGKRRE
Sbjct: 61 HAFNISWPSLSFDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRE 120
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
L+P+KP DD D+DS+SSDSDED + +E GG P+ QLRKVAH+GCVNRIRAM QNPHI
Sbjct: 121 LLPSKPVTDDTDMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHI 180
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CASWAD GHVQ+WD SHLN LA SE V G V NQ+PL F HKDEGYA+DW+P+
Sbjct: 181 CASWADGGHVQIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLF-KHKDEGYALDWSPL 239
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
GRL++GDC S I+LWEP+S +WNVD PF+GHSASVEDLQWSPTEP VF+SCS DG+
Sbjct: 240 VPGRLLSGDCKSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGN 299
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336
+AIWD R GKS SFKAHNADVNVISWNR LA C
Sbjct: 300 VAIWDVRSGKSPAASFKAHNADVNVISWNR--LASC 333
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512379|ref|XP_003524897.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/336 (76%), Positives = 282/336 (83%), Gaps = 5/336 (1%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
M R IK+ +KAK K KV+KK GSSSS P +P KVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MTRGIKHRQKAKSKKKVSKKESGSSSSLAPEIPAKVWQPGVDKLEEGEELQCDPSAYNSL 60
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFHIGWPCLSFDI+RD+LGLVR EFPHT YF+AGTQAEKPSWNSIG+FKVSNI+GKRRE
Sbjct: 61 HAFHIGWPCLSFDILRDSLGLVRKEFPHTVYFMAGTQAEKPSWNSIGIFKVSNITGKRRE 120
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
VP K DD ++D E SDSD+DS+D+E G G P LQLRKVAHQGCVNRIR+M QNPHI
Sbjct: 121 PVP-KLGTDDTEMDGEDSDSDDDSEDEEGGAQG-PSLQLRKVAHQGCVNRIRSMPQNPHI 178
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CA+WADTGHVQVWDL SHLNALAESET QG V NQ PL KF HKDEGYAIDW+P+
Sbjct: 179 CAAWADTGHVQVWDLNSHLNALAESETEGVQGVAAVFNQDPLYKF-KHKDEGYAIDWSPL 237
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
GRL +GDCN+CIYLWEP S TWNVD PF GH+ASVEDLQWSPTEPDVFASCSVDG+
Sbjct: 238 VPGRLASGDCNNCIYLWEPTSAGTWNVDNAPFTGHTASVEDLQWSPTEPDVFASCSVDGN 297
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336
IAIWDTR+GKS SFKAHNADVNV+SWNR LA C
Sbjct: 298 IAIWDTRLGKSPAASFKAHNADVNVMSWNR--LASC 331
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081134|ref|XP_002306305.1| predicted protein [Populus trichocarpa] gi|222855754|gb|EEE93301.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 229/299 (76%), Positives = 260/299 (86%)
Query: 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
+PTKVWQPGVDKL E EEL+CDPTAYNSLHAFHIGWPCLSFD+VRD+LGL+R +FPHT Y
Sbjct: 1 MPTKVWQPGVDKLGEEEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHTVY 60
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
FVAGTQAEKP WNSIG+FKVSN+SGK+RELVP+K + D D+D+++SDSDEDS+D+EEGG
Sbjct: 61 FVAGTQAEKPDWNSIGIFKVSNVSGKQRELVPSKTTAGDSDMDTDNSDSDEDSEDEEEGG 120
Query: 152 SGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211
S TP+LQLRKVAH+GC+NRIRAMTQNPHICASW+D G+VQ+WD +HLNALAESET V +
Sbjct: 121 SATPVLQLRKVAHRGCINRIRAMTQNPHICASWSDAGYVQIWDFSTHLNALAESETEVPR 180
Query: 212 GAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP 271
GA V NQ+PL F GHKDEGYAIDW+P GRLVTGDC +CI+LWE S ATWNVD P
Sbjct: 181 GASSVFNQAPLFNFKGHKDEGYAIDWSPRVAGRLVTGDCKNCIHLWESTSGATWNVDATP 240
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330
F GH+ASVEDLQWS TE VFASCSVDGHIAIWD R+GKS FKAHNADVNVISWNR
Sbjct: 241 FTGHTASVEDLQWSSTEDHVFASCSVDGHIAIWDARLGKSPAIYFKAHNADVNVISWNR 299
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532697|ref|XP_004173317.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/326 (72%), Positives = 268/326 (82%), Gaps = 3/326 (0%)
Query: 11 AKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCL 70
++ K+K + G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSLHAF+I WP L
Sbjct: 1 SQEKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSLHAFNISWPSL 60
Query: 71 SFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDD 130
SFDIVRDTLGLVR EFPHT YFVAGTQAEK SWNSIG++K+SNISGKRREL+P+KP DD
Sbjct: 61 SFDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRELLPSKPVTDD 120
Query: 131 EDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHV 190
D+DS+SSDSDED + +E GG P+ QLRKVAH+GCVNRIRAM QNPHICASWAD GHV
Sbjct: 121 TDMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHICASWADGGHV 180
Query: 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250
Q+WD SHLN LA SE V G V NQ+PL F HKDEGYA+DW+P+ GRL++GDC
Sbjct: 181 QIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLF-KHKDEGYALDWSPLVPGRLLSGDC 239
Query: 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310
S I+LWEP+S +WNVD PF+GHSASVEDLQWSPTEP VF+SCS DG++AIWD R GK
Sbjct: 240 KSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGNVAIWDVRSGK 299
Query: 311 SALTSFKAHNADVNVISWNRCWLAVC 336
S SFKAHNADVNVISWNR LA C
Sbjct: 300 SPAASFKAHNADVNVISWNR--LASC 323
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525166|ref|XP_003531198.1| PREDICTED: LOW QUALITY PROTEIN: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/338 (70%), Positives = 267/338 (78%), Gaps = 10/338 (2%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
M R IK+ R+ +KK GSSSS P +P KVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MTRGIKH-----RQKAKSKKKGGSSSSLAPEIPAKVWQPGVDKLEEGEELQCDPSAYNSL 55
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFHIGWPCLSFDI+RD+LGLVR EFPHT YF+AGTQAEKPSWNSIG+FKVSNI+GKRRE
Sbjct: 56 HAFHIGWPCLSFDILRDSLGLVRTEFPHTVYFMAGTQAEKPSWNSIGIFKVSNITGKRRE 115
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPI--LQLRKVAHQGCVNRIRAMTQNP 178
VP ++D E +S D+ ++DE + LQLRKVAHQGCVNRIR+M QNP
Sbjct: 116 PVPKLGTDDTEMDGEDSDSDDDSEEEDEGVLTFXFFSHLQLRKVAHQGCVNRIRSMPQNP 175
Query: 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238
HICA+WADTGHVQVWDL SHLN LAE+ET QG V NQ PL KF HKDEGYAIDW+
Sbjct: 176 HICAAWADTGHVQVWDLNSHLNVLAETETEGVQGVAAVFNQDPLYKF-KHKDEGYAIDWS 234
Query: 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298
P+ G+L +GDCN+CIYLWEP S TWNVD PFIGH+ASVEDLQWSPTE VFASCSVD
Sbjct: 235 PLVPGKLASGDCNNCIYLWEPTSAGTWNVDNAPFIGHTASVEDLQWSPTESHVFASCSVD 294
Query: 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336
G+IAIWDTR+GKS SFKAHNADVNV+SWNR LA C
Sbjct: 295 GNIAIWDTRLGKSPAASFKAHNADVNVMSWNR--LASC 330
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093750|ref|XP_002309975.1| predicted protein [Populus trichocarpa] gi|222852878|gb|EEE90425.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/298 (73%), Positives = 244/298 (81%), Gaps = 13/298 (4%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
PTKVWQPGVD LEEGEEL+CDPTAYNSLHAFHIGWPCLSFD+VRD+LGL+R +FPH+ YF
Sbjct: 1 PTKVWQPGVDNLEEGEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHSVYF 60
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152
VAGTQAE P WNSIG+FK+SN+SGKR SDSDEDS+D+EEGGS
Sbjct: 61 VAGTQAENPDWNSIGIFKISNVSGKRHN-------------SDNDSDSDEDSEDEEEGGS 107
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P+LQLRKVAH GCVNRIRAM QNPHICASW+D G+VQ+W+ +HLNALAESET V +G
Sbjct: 108 AAPVLQLRKVAHSGCVNRIRAMIQNPHICASWSDAGYVQIWNFSTHLNALAESETEVPRG 167
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
V NQ+PL F GHKDEGYAIDW+P TGRLVTGDC SCI+LWEP S ATWNVD PF
Sbjct: 168 GSSVFNQAPLFNFKGHKDEGYAIDWSPRVTGRLVTGDCKSCIHLWEPTSGATWNVDATPF 227
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330
GH+ASVED+QWSPTE VFASCSVDGHIAIWD R+GKS SFKAHNADVNV+SWNR
Sbjct: 228 TGHTASVEDIQWSPTEDHVFASCSVDGHIAIWDARLGKSPAISFKAHNADVNVLSWNR 285
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836302|ref|XP_002886033.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331873|gb|EFH62292.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/312 (68%), Positives = 249/312 (79%), Gaps = 3/312 (0%)
Query: 25 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRN 84
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144
EFPHT Y VAGTQAEK + NSIG+FK++N+SGKRR++VP +N D+ D + D +
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTLANGDDMEDEDDDDDSDSD 139
Query: 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204
DDD + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAE
Sbjct: 140 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 199
Query: 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT 264
SET G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +
Sbjct: 200 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 258
Query: 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
W VDP PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVN
Sbjct: 259 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 318
Query: 325 VISWNRCWLAVC 336
VISWNR LA C
Sbjct: 319 VISWNR--LASC 328
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224798|ref|NP_179544.1| transducin-like protein [Arabidopsis thaliana] gi|13877611|gb|AAK43883.1|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gi|4191784|gb|AAD10153.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|22136272|gb|AAM91214.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|330251799|gb|AEC06893.1| transducin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/312 (69%), Positives = 249/312 (79%), Gaps = 4/312 (1%)
Query: 25 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRN 84
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144
EFPHT Y VAGTQAEK + NSIG+FK++N+SGKRR++VP K + ED D + D +
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVP-KTFGNGEDEDEDDEDDSDSD 138
Query: 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204
DDD + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAE
Sbjct: 139 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 198
Query: 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT 264
SET G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +
Sbjct: 199 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 257
Query: 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
W VDP PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVN
Sbjct: 258 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 317
Query: 325 VISWNRCWLAVC 336
VISWNR LA C
Sbjct: 318 VISWNR--LASC 327
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2050388 | 469 | AT2G19540 "AT2G19540" [Arabido | 0.846 | 0.648 | 0.668 | 2.9e-112 | |
| DICTYBASE|DDB_G0291566 | 482 | grwd1 "glutamate-rich WD repea | 0.785 | 0.585 | 0.439 | 3e-62 | |
| FB|FBgn0022288 | 456 | l(2)09851 "lethal (2) 09851" [ | 0.481 | 0.379 | 0.505 | 3.7e-62 | |
| UNIPROTKB|Q9BQ67 | 446 | GRWD1 "Glutamate-rich WD repea | 0.487 | 0.392 | 0.458 | 1.8e-58 | |
| RGD|1310649 | 445 | Grwd1 "glutamate-rich WD repea | 0.487 | 0.393 | 0.458 | 1.6e-57 | |
| UNIPROTKB|F1RL85 | 445 | GRWD1 "Uncharacterized protein | 0.487 | 0.393 | 0.453 | 2.6e-57 | |
| ZFIN|ZDB-GENE-030131-9844 | 452 | grwd1 "glutamate-rich WD repea | 0.791 | 0.628 | 0.412 | 3.3e-56 | |
| UNIPROTKB|E2RBY0 | 440 | GRWD1 "Uncharacterized protein | 0.487 | 0.397 | 0.441 | 6.1e-56 | |
| UNIPROTKB|Q1JQD2 | 446 | GRWD1 "Glutamate-rich WD repea | 0.484 | 0.390 | 0.438 | 1.3e-55 | |
| MGI|MGI:2141989 | 446 | Grwd1 "glutamate-rich WD repea | 0.791 | 0.636 | 0.411 | 1.3e-54 |
| TAIR|locus:2050388 AT2G19540 "AT2G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 206/308 (66%), Positives = 235/308 (76%)
Query: 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPH 88
IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R EFPH
Sbjct: 24 IPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRTEFPH 83
Query: 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXX 148
T Y VAGTQAEK + NSIG+FK++N+SGKRR++VP N
Sbjct: 84 TLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTFGNGEDEDEDDEDDSDSDDDDGD 143
Query: 149 XGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI 208
S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAESET
Sbjct: 144 EA-SKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETE 202
Query: 209 VGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD 268
G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +W VD
Sbjct: 203 GKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GSWAVD 261
Query: 269 PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
P PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVNVISW
Sbjct: 262 PIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISW 321
Query: 329 NRCWLAVC 336
NR LA C
Sbjct: 322 NR--LASC 327
|
|
| DICTYBASE|DDB_G0291566 grwd1 "glutamate-rich WD repeat-containing protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 131/298 (43%), Positives = 176/298 (59%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++PHT Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGS 152
VAGTQA++ N + + K ++L K +
Sbjct: 128 VAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKD 180
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P LQL + H G VNRIR+M Q +I A+W+D V +W++ +HL AL ++ET+
Sbjct: 181 VDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETV---- 235
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
AP+ + +PL H EGYA+DW+P GRL TGDCN+ I++ AS++TW D F
Sbjct: 236 APKQT--APLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFVTN-ASESTWKTDTQAF 292
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330
GH+ SVED+QWSP+E VFASCS+D + IWD R K A+T KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAIT-VKAHTADVNVISWSR 349
|
|
| FB|FBgn0022288 l(2)09851 "lethal (2) 09851" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 91/180 (50%), Positives = 108/180 (60%)
Query: 155 PILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213
P + V HQGCVNR+RA N ASW++ G V +WDL L A+ E+ + Q
Sbjct: 150 PQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAV-ENAQLAKQY- 207
Query: 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI 273
+ S P+ FGGH+ EG+AIDW+P G L TGDC I++W P D TW VD P
Sbjct: 208 -EQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVWTPVEDGTWKVDQRPLA 266
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSA-LTSFKAHNADVNVISWNR 330
GHS SVEDLQWSP E V ASCSVD I IWD R K+ LT AH +DVNVISWNR
Sbjct: 267 GHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCRASPQKACMLTCEDAHQSDVNVISWNR 326
|
|
| UNIPROTKB|Q9BQ67 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 83/181 (45%), Positives = 111/181 (61%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + E + +
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFL 197
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P TGRL+TGDC I+LW P +W+VD PF
Sbjct: 198 RDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVISW+
Sbjct: 258 VGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWS 317
Query: 330 R 330
R
Sbjct: 318 R 318
|
|
| RGD|1310649 Grwd1 "glutamate-rich WD repeat containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 83/181 (45%), Positives = 112/181 (61%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFL 196
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +WNVD PF
Sbjct: 197 RDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQRPF 256
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWS 316
Query: 330 R 330
R
Sbjct: 317 R 317
|
|
| UNIPROTKB|F1RL85 GRWD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 82/181 (45%), Positives = 110/181 (60%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 196
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD PF
Sbjct: 197 RDEQARVKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDSGSWHVDQRPF 256
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AHN DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTPAAHNGDVNVISWS 316
Query: 330 R 330
R
Sbjct: 317 R 317
|
|
| ZFIN|ZDB-GENE-030131-9844 grwd1 "glutamate-rich WD repeat containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 123/298 (41%), Positives = 166/298 (55%)
Query: 35 KVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVA 94
KV+ PG+ L+ GEEL+ D +AY H G PCLSFD+V D G R +FP + A
Sbjct: 42 KVYVPGLQPLQPGEELEMDHSAYRMYHECQTGAPCLSFDVVLDGEGDRREQFPLSMVLCA 101
Query: 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGT 154
GTQA+ N + V ++ N+ G ++ +K S+
Sbjct: 102 GTQADTALSNRLIVMRMHNLQGTEKKKDEDKSSDEESDEDEDDEDEDKK----------- 150
Query: 155 PILQLRKVAHQGCVNRIRAMTQNPH-ICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213
P L+L + H G +NR+R + + A W++ G V+++DLR L A+ S T +
Sbjct: 151 PQLELAMMPHYGGINRVRVTQRGEQTLAAVWSEKGQVEIFDLRLQLEAVHNS-TAMSAFI 209
Query: 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI 273
Q +PL F GH EG+AIDW+P GR+V+GDC I++WEP TW +D PF
Sbjct: 210 KQEKEATPLFSFAGHMSEGFAIDWSPKVPGRMVSGDCKKNIHVWEPQEGGTWKIDQRPFS 269
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNR 330
HS SVEDLQWSPTE VFASCSVD I IWD R S L++ +AH++DVNVISWNR
Sbjct: 270 SHSKSVEDLQWSPTEATVFASCSVDQSIRIWDIRAPPNSMLSANEAHSSDVNVISWNR 327
|
|
| UNIPROTKB|E2RBY0 GRWD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 80/181 (44%), Positives = 111/181 (61%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 133 PQLELAMVPHYGGINRVRVSWLGEEP-VAGIWSEKGQVEVFALRRLLQVVDDPQALATFL 191
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P +GRL+TGDC I+LW P +W+VD PF
Sbjct: 192 RDEQARVKPIFTFAGHMGEGFALDWSPRVSGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 251
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W+
Sbjct: 252 MGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTTSAHDGDVNVINWS 311
Query: 330 R 330
R
Sbjct: 312 R 312
|
|
| UNIPROTKB|Q1JQD2 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 79/180 (43%), Positives = 109/180 (60%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 197
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD PF
Sbjct: 198 RDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W+
Sbjct: 258 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWS 317
|
|
| MGI|MGI:2141989 Grwd1 "glutamate-rich WD repeat containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 125/304 (41%), Positives = 167/304 (54%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGG 151
AGTQAE N + + ++ N+ G R P++ S+
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGSDDDEEDEDEEDEEEQK-------- 138
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 139 ---PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 194
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC ++LW P +WNVD
Sbjct: 195 IFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQ 254
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 255 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVI 314
Query: 327 SWNR 330
SW+R
Sbjct: 315 SWSR 318
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| pfam12265 | 73 | pfam12265, CAF1C_H4-bd, Histone-binding protein RB | 5e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 5e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.001 |
| >gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 5e-18
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 45 EEGEEL--QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKP 101
E EL + DP Y+ LH + WP LSFD + D L G R HT + GTQ
Sbjct: 1 NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYP--HTQRLLLGTQTSGQ 58
Query: 102 SWNSIGVFKVSNISG 116
N + V KVS S
Sbjct: 59 EQNYLLVAKVSLPSK 73
|
The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 31/178 (17%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H VN + + +S D G +++WDLR+ +
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQD-GTIKLWDLRT---------------------GKCV 170
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL 282
GH E ++ ++P +L++ + I LW+ ++ GH V +
Sbjct: 171 ATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGT----LRGHENGVNSV 225
Query: 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRCWLAVCWH 338
+SP + AS S DG I +WD R G+ + + H V ++W + LA
Sbjct: 226 AFSPD-GYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSPDGKRLASGSA 281
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 29/168 (17%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
H G V + + D G ++VWDL L
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGD-GTIKVWDL---------------------ETGELLR 45
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
GH + + T L +G + I LW+ + GH++ V +
Sbjct: 46 TLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVA 100
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331
+SP + +S S D I +WD GK LT+ + H VN ++++
Sbjct: 101 FSPDGR-ILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPD 146
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 45/183 (24%)
Query: 154 TPILQLRKVAHQGCVNRIRAMTQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQG 212
T L H G V + A ++ S T +++WDL
Sbjct: 40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT--IRLWDL----------------- 80
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT---WNVDP 269
+ GH ++ ++P GR+++ + D T W+V+
Sbjct: 81 ----ETGECVRTLTGHTSYVSSVAFSP--DGRILSSS----------SRDKTIKVWDVET 124
Query: 270 NPFI----GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325
+ GH+ V + +SP AS S DG I +WD R GK + + H +VN
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNS 182
Query: 326 ISW 328
+++
Sbjct: 183 VAF 185
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 5e-09
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276
+ + GH + ++ ++P + I LW+ + + GH+
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHT 198
Query: 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNRCWLAV 335
V L +SP + AS S DG I +WD GK ++ H ++ V+ S + LA
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 336 C 336
Sbjct: 259 G 259
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (130), Expect = 4e-08
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 28/204 (13%)
Query: 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWA 185
S D + SS D + G I L H V + + + +
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFSPDGKLLASGSS 175
Query: 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245
G +++WDLR+ PL GH D ++ ++P +
Sbjct: 176 LDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
+G + I LW+ + T + + GHS SV +SP + AS S DG I +WD
Sbjct: 215 ASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWD 269
Query: 306 TRVGKSALTSFKAHNADVNVISWN 329
R S L + H++ V ++++
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFS 293
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H G VN + + +S + G +++WDL + L
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLST---------------------GKCL 212
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
GH++ ++ ++P G L+ G + I +W+ + GH+ SV
Sbjct: 213 GTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQT----LSGHTNSVTS 266
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD 305
L WSP AS S DG I IWD
Sbjct: 267 LAWSPDGK-RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286
GH + ++P L TG + I +W D GH+ V D+ S
Sbjct: 7 GHTGGVTCVAFSPD-GKLLATGSGDGTIKVW----DLETGELLRTLKGHTGPVRDVAASA 61
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330
AS S D I +WD G+ + + H + V+ ++++
Sbjct: 62 DG-TYLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSP 103
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-06
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230
+ + + + + AS + G +++WDLRS S L GH
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSS--------------------SSLLRTLSGHSS 285
Query: 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290
++ ++P L +G + + LW+ + + GH V L +SP
Sbjct: 286 SVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKL--LSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
+ + S DG I +WD R GK T N V +S++
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFS 379
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-------KSALTSFKAHNADVNVI 326
GH++S+ DLQ++P ++ AS S D I +W+ K K H +++I
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 327 SWN 329
WN
Sbjct: 132 DWN 134
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
GH+ V + +SP + AS S DG + +WD
Sbjct: 7 LKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
GH+ V + +SP AS S DG I +WD
Sbjct: 8 LKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 212 GAPQVSNQ---SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE-PASDATWNV 267
GA ++ NQ P++K GH + +NP + L +G + I +WE P +D +
Sbjct: 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113
Query: 268 DPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313
+P GH + + W+P + S D + IWD K A
Sbjct: 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
|
Length = 568 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 231 EGYAID--WNPITTGRLVTGDCNSCIYLWE-PASDATWNVDPN--PFIGHSASVEDLQWS 285
EG ID +NP +L T + I W P T N+ GH+ V + +
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH 134
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
P+ +V AS D + +WD GK A+ K H+ + + WN
Sbjct: 135 PSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWN 177
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.93 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.9 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.89 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.88 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.87 | |
| PTZ00420 | 568 | coronin; Provisional | 99.87 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.87 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.86 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.86 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.85 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.84 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.84 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.84 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| PF12265 | 74 | CAF1C_H4-bd: Histone-binding protein RBBP4 or subu | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.84 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.83 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.82 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.82 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.82 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.81 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.81 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.81 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.81 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.81 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.79 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.78 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.78 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.78 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.77 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.77 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.76 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.75 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.73 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.73 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.72 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.72 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.71 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.71 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.7 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.69 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.69 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.69 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.68 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.68 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.67 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.67 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.66 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.64 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.64 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.63 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.58 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.57 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.57 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.56 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.55 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.55 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.54 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.53 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.53 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.52 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.52 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.5 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.5 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.5 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.49 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.49 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.48 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.47 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.44 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.43 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.4 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.4 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.38 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.37 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.35 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.34 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.24 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.22 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.21 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.21 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.21 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.2 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.18 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.15 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.12 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.11 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.08 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.06 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.05 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.02 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.01 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.0 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.95 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.91 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.87 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.86 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.84 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.65 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.64 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.61 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.59 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.57 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.56 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.56 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.54 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.53 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.52 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.52 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.45 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.39 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.36 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.34 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.32 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.31 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.3 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.3 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.3 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.27 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.26 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.24 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.19 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.19 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.16 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.15 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.14 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.05 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.91 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.85 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.8 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.77 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.77 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.75 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.67 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.65 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.63 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.61 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.6 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.59 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.57 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.51 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.48 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.43 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.24 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.22 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.19 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.18 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.08 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.03 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.01 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.87 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.75 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.63 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.55 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.49 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.23 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.08 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.06 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.03 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.97 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.93 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.82 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.79 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.76 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.67 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.66 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.56 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.52 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.48 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.42 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.38 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.34 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.26 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.24 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.22 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.02 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.0 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.98 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.86 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.71 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.5 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.46 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.4 | |
| PRK10115 | 686 | protease 2; Provisional | 94.24 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.17 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.15 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.1 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.71 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.51 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.51 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.48 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.14 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.03 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.9 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 92.65 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.55 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.45 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.89 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.44 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 91.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.03 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.66 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.34 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.02 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 89.96 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.76 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.03 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 88.77 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.75 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.54 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 88.51 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 87.95 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 87.69 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.58 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.24 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 85.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 85.55 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 85.52 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 84.91 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 84.35 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 83.49 | |
| PRK10115 | 686 | protease 2; Provisional | 83.22 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 81.73 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.72 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 81.35 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 80.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 80.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 80.52 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 80.19 |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=445.41 Aligned_cols=298 Identities=51% Similarity=0.894 Sum_probs=262.6
Q ss_pred CCCCeeeeCCcc-cCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEE
Q 018235 31 SLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVF 109 (359)
Q Consensus 31 ~~~~~~~~~~~~-~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~ 109 (359)
....++|+||.. +|++||||++||++|.|+|.++.+|||||||++||.+|.+|+.||++.|+|+|||+.....|.|.||
T Consensus 33 ~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vl 112 (440)
T KOG0302|consen 33 EDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVL 112 (440)
T ss_pred cccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEE
Confidence 334789999944 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCC
Q 018235 110 KVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTG 188 (359)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg 188 (359)
+++||.+++... +.++.++.+|++++ ++|++..+.++|.|+|||++.++.+ ..++|++++.|
T Consensus 113 kl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G 175 (440)
T KOG0302|consen 113 KLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENG 175 (440)
T ss_pred EeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecccC
Confidence 999999998732 11111111122211 4899999999999999999999985 57899999999
Q ss_pred cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceec
Q 018235 189 HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD 268 (359)
Q Consensus 189 ~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~ 268 (359)
.|+||++..+++.+...+..... ...+|++++.+|..++|+|+|||...|.|+||+|-+.|++|.+.+ +.|.+.
T Consensus 176 ~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd 249 (440)
T KOG0302|consen 176 RVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVD 249 (440)
T ss_pred cEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Cceeec
Confidence 99999999988888777665544 146899999999999999999999988999999999999999988 899999
Q ss_pred CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceE
Q 018235 269 PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL 347 (359)
Q Consensus 269 ~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~ 347 (359)
.++|.+|+.+|++++|||++.++|||||.||+|+|||+|.+ +++....++|.++||.|+||..-.+|+.+.. ++.
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D----dGt 325 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD----DGT 325 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC----Cce
Confidence 99999999999999999999999999999999999999998 3455556999999999999999998887766 899
Q ss_pred EEEEeCcC
Q 018235 348 FMILDCSR 355 (359)
Q Consensus 348 i~iwd~~~ 355 (359)
++|||.+.
T Consensus 326 ~~iwDLR~ 333 (440)
T KOG0302|consen 326 LSIWDLRQ 333 (440)
T ss_pred EEEEEhhh
Confidence 99999875
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=353.72 Aligned_cols=285 Identities=27% Similarity=0.460 Sum_probs=232.8
Q ss_pred CCCCCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEE
Q 018235 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGV 108 (359)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i 108 (359)
..+++|++|+++++ +|||.+++|+|+|||||+||+||......+.|. .++|++||+|+++.+|+|+|
T Consensus 15 ~i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~-~~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 15 QINEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFS-KQRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred cccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCce-eEEEEEEeecCCCCccEEEE
Confidence 46778999999999 999999999999999999999996554445555 59999999999999999999
Q ss_pred EEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCC-CeEEEEEecCCCceeeEEEeCCCCcEEEEEe
Q 018235 109 FKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGT-PILQLRKVAHQGCVNRIRAMTQNPHICASWA 185 (359)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~--~~~-~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s 185 (359)
.++ +|+...... ++ ...+.+.++.++ ... .+.+.+.+.|.|.||++|++|+.+.+|||++
T Consensus 82 A~v-~lp~~~~~~------------~~----~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t 144 (422)
T KOG0264|consen 82 ASV-QLPTDDAQF------------ED----KHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKT 144 (422)
T ss_pred Eee-cCCCccccc------------cc----ccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecC
Confidence 998 566554432 01 111222222221 112 3444678899999999999999999999999
Q ss_pred CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-
Q 018235 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT- 264 (359)
Q Consensus 186 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~- 264 (359)
..+.|+|||..++.......+ ...|...+.||..++++|+|++...+.|++|+.|++|++||++..+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 999999999998654433221 25778899999999999999999999999999999999999987443
Q ss_pred --ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 265 --WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 265 --~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
.+.+...|.+|...|++++|+|.+..+|++++.|+.+.|||+|+. .++.....+|.++|+|++|||.+.+++.....
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 244456788999999999999999999999999999999999962 35667779999999999999999888776654
Q ss_pred cccceEEEEEeCcCCc
Q 018235 342 MMEHFLFMILDCSRGE 357 (359)
Q Consensus 342 ~~~d~~i~iwd~~~g~ 357 (359)
|+.|++||.|...
T Consensus 294 ---D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 294 ---DKTVALWDLRNLN 306 (422)
T ss_pred ---CCcEEEeechhcc
Confidence 9999999998643
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=234.90 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=156.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
...++.+|.|+|..++|+|+. ++++++++|++|++|.+.+ ...+..++||..+|+.++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 335689999999999999999 8999999999999999998 567788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|.|- +||||+.|++.++|.... ..+. +.|.+|-+.|.|++|||+.. ++|+||.|++||+||+.++ ..++.+
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~-~~Pl---RifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G-~~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDH-NKPL---RIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG-NSVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeeccc-CCch---hhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC-cEEEEe
Confidence 999998 999999999999999876 4443 88999999999999999998 9999999999999999998 788889
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+|.++|.+++|+|+|.+|+.+.. ++.|++||...|..
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLANGSL 611 (707)
T ss_pred cCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCCCcc
Confidence 999999999999999999998876 99999999998763
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=232.70 Aligned_cols=202 Identities=20% Similarity=0.314 Sum_probs=178.9
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
...-|..++.+.|+. .+||.++ ++..+.+|.+.
T Consensus 449 GH~GPVyg~sFsPd~-----------rfLlScS-----ED~svRLWsl~------------------------------- 481 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR-----------RFLLSCS-----EDSSVRLWSLD------------------------------- 481 (707)
T ss_pred cCCCceeeeeecccc-----------cceeecc-----CCcceeeeecc-------------------------------
Confidence 345688888888874 4666655 56789999882
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.........+|..+|+.++|+|.| .+|||++.|++.++|.... ..|++
T Consensus 482 ----------t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~---------------------~~PlR 529 (707)
T KOG0263|consen 482 ----------TWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH---------------------NKPLR 529 (707)
T ss_pred ----------cceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc---------------------CCchh
Confidence 334445666999999999999999 9999999999999999987 78999
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
+|.||.+.+-|+.|+|+.. ++++||.|.++++||+.+ +..+ +.|.||+++|.+|+|||.|. .||+|+.||.|.|
T Consensus 530 ifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~V---RiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSV---RIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKI 603 (707)
T ss_pred hhcccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEE---EEecCCCCceEEEEEcCCCc-eEeecccCCcEEE
Confidence 9999999999999999998 999999999999999988 4444 78999999999999999999 9999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
||+.++ ..+..+.+|.+.|++|+|+++|..|+.+.. |+.|++||...
T Consensus 604 WDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~----DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGA----DNSVRLWDLTK 650 (707)
T ss_pred EEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCC----CCeEEEEEchh
Confidence 999998 788888999999999999999999998877 99999999753
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=218.03 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=154.5
Q ss_pred eEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+..++.+|.+.|.++.|+|. ...-+|||+.||+|++|++.. ..++..+.+|...|..
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSR 266 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhhee
Confidence 456889999999999999998 357899999999999999987 5788999999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
++|+|.|. +|+|++.|.+-++||+++.... .-..||...|.+++|+|+|. +++||+.|..-||||+|++ .++.
T Consensus 267 VafHPsG~-~L~TasfD~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg-r~im 339 (459)
T KOG0272|consen 267 VAFHPSGK-FLGTASFDSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG-RCIM 339 (459)
T ss_pred eeecCCCc-eeeecccccchhhcccccchhh----HhhcccccccceeEecCCCc-eeeccCccchhheeecccC-cEEE
Confidence 99999999 9999999999999999984443 34679999999999999999 9999999999999999999 8888
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.+|...|..|+|+|+|..++++.. |++++|||.+.
T Consensus 340 ~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRM 376 (459)
T ss_pred EecccccceeeEeECCCceEEeecCC----CCcEEEeeecc
Confidence 99999999999999999999888776 99999999875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=214.26 Aligned_cols=167 Identities=23% Similarity=0.481 Sum_probs=148.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.++|-+++|+|.+ ..+|||+.|.+|++||+.+ ..|.++.++|...|.+++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred cccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEEC
Confidence 4567899999999999988 8999999999999999998 68899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC----CCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE----PDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
|++. .||||+.||+|++||+.+++... +++.+|+..|++++|.|-+ ..+||++|.||+|+|||+..+ .++.
T Consensus 167 PDgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~ 241 (480)
T KOG0271|consen 167 PDGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVR 241 (480)
T ss_pred CCcc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEE
Confidence 9999 99999999999999999865544 8899999999999998753 228999999999999999987 7888
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.+|..+|+|+.|--+| ++++.. .|++|++|+...|.
T Consensus 242 ~lsgHT~~VTCvrwGG~g--liySgS---~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEG--LIYSGS---QDRTIKVWRALDGK 279 (480)
T ss_pred EeccCccceEEEEEcCCc--eEEecC---CCceEEEEEccchh
Confidence 999999999999998544 444443 39999999988764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=196.79 Aligned_cols=216 Identities=21% Similarity=0.347 Sum_probs=179.0
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
.--.++|+.|-. +.+..++++++-.-...+.|.|+++..
T Consensus 9 f~GysvqfSPf~--------~nrLavAt~q~yGl~G~G~L~ile~~~--------------------------------- 47 (311)
T KOG0277|consen 9 FHGYSVQFSPFV--------ENRLAVATAQHYGLAGNGRLFILEVTD--------------------------------- 47 (311)
T ss_pred cccceeEecccc--------cchhheeehhhcccccCceEEEEecCC---------------------------------
Confidence 334567776642 223445555555545677899998730
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
...+.+.+...-...+..++|++...+++++++.||.++|||+.. +..|+..|+
T Consensus 48 ------~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~k 101 (311)
T KOG0277|consen 48 ------PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFK 101 (311)
T ss_pred ------CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHH
Confidence 155666788888999999999999889999999999999999776 478999999
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.|..+|++++|++..+..++++|-|++|+||+...+.. + ++|.+|..-|+..+|||..+++|+++|.|++++|||+
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv 177 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-V---QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV 177 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-e---EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence 99999999999999887899999999999999977433 3 6899999999999999999999999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...+.+ .+.+|...|.|+.|+..+..++.+... |+.|++||++.-.
T Consensus 178 r~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~r 224 (311)
T KOG0277|consen 178 RSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGV---DNLVRGWDIRNLR 224 (311)
T ss_pred cCCCcee-EEEeccceeEeecccccCCcEEEecCC---CceEEEEehhhcc
Confidence 9984444 489999999999999988877766554 9999999998644
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=212.81 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=148.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|.+++|+|.| .+++|++.|.+-++||+.+ ...+....||..+|++++|+
T Consensus 255 ~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~t---------------------k~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLET---------------------KSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred hhhhcchhhheeeeecCCC-ceeeecccccchhhccccc---------------------chhhHhhcccccccceeEec
Confidence 5667999999999999999 8999999999999999998 45566788999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
++|. +++||+.|..-+|||+|++ ..+ ..+.+|...|.+|.|+|+|- .+||||.|++++|||+|.. ..+.++.+
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRtg-r~i---m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r-~~ly~ipA 385 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRTG-RCI---MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR-SELYTIPA 385 (459)
T ss_pred CCCc-eeeccCccchhheeecccC-cEE---EEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc-ccceeccc
Confidence 9999 9999999999999999995 444 46889999999999999998 9999999999999999997 77889999
Q ss_pred CCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|..-|+.++|+| .|.+|+.... |++++||...+..
T Consensus 386 H~nlVS~Vk~~p~~g~fL~Tasy----D~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASY----DNTVKIWSTRTWS 421 (459)
T ss_pred ccchhhheEecccCCeEEEEccc----CcceeeecCCCcc
Confidence 999999999999 5566665544 9999999877654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=190.91 Aligned_cols=229 Identities=18% Similarity=0.352 Sum_probs=185.2
Q ss_pred CCCceeeeChhHhhhhhcccccCc-ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCC
Q 018235 45 EEGEELQCDPTAYNSLHAFHIGWP-CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (359)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP-~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~ 123 (359)
.+|--++.|.+.-+-.|.+.|+-- .+++-+-|.+ .++.+|- -+|.-.|+.++.-
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-----------~~VAcGG-----LdN~Csiy~ls~~--------- 129 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-----------NFVACGG-----LDNKCSIYPLSTR--------- 129 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCC-----------CeEEecC-----cCceeEEEecccc---------
Confidence 467778887777777766655422 3577777764 5666665 5888999988510
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 018235 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (359)
Q Consensus 124 ~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (359)
+. + ........+.+|.+-+.+++|.+++ .|+|++.|.+..+||+.+
T Consensus 130 --------------------d~---~---g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~------ 175 (343)
T KOG0286|consen 130 --------------------DA---E---GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET------ 175 (343)
T ss_pred --------------------cc---c---ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc------
Confidence 00 0 1333446778999999999999965 688999999999999998
Q ss_pred cccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE
Q 018235 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (359)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (359)
++.+..|.||.+.|.+|+++|.....++||++|+..+|||+|. +... +.|.+|.+.|+.|+
T Consensus 176 ---------------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~---qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 176 ---------------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCV---QTFEGHESDINSVR 236 (343)
T ss_pred ---------------ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-ccee---EeecccccccceEE
Confidence 7788999999999999999994334999999999999999998 4544 78999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|.|+|. -|++||.|+++|+||+|.. +.+..+ ..-..+|++++|+..|++|..+.. |..+.+||.-.++
T Consensus 237 ffP~G~-afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 237 FFPSGD-AFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYD----DFTCNVWDTLKGE 306 (343)
T ss_pred EccCCC-eeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeec----CCceeEeeccccc
Confidence 999999 9999999999999999997 555444 334568999999999999998876 8899999987665
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=202.06 Aligned_cols=166 Identities=23% Similarity=0.446 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.|+. ++++|.++|++++|+|.+ .+|+|+++|++++||.... ......|.+|..+|+
T Consensus 350 ~P~~--t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~---------------------~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 350 RPVK--TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ---------------------SNSVHDLQAHSKEIY 405 (524)
T ss_pred Ccce--eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC---------------------Ccchhhhhhhcccee
Confidence 5554 566899999999999999 8999999999999999876 567788999999999
Q ss_pred EEEeCCCCCC--------eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 234 AIDWNPITTG--------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 234 ~l~~sp~~~~--------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+.|+|.+++ .|++++.|++|++||+.. +.++ ..|..|+.+|++|+|+|++. ++|+|+.||.|+||+
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i---~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPI---HTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWS 480 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Ccee---EeeccCCCceEEEEecCCCc-EEEecCCCCeeEecc
Confidence 9999998764 799999999999999987 5554 78999999999999999999 999999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++++ +.++.+. -+..|+.++||..|..|+.... ++.+++.|.+
T Consensus 481 ~~~~-~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~s----d~~vcvldlr 523 (524)
T KOG0273|consen 481 TKTG-KLVKSYQ-GTGGIFELCWNAAGDKLGACAS----DGSVCVLDLR 523 (524)
T ss_pred ccch-heeEeec-CCCeEEEEEEcCCCCEEEEEec----CCCceEEEec
Confidence 9997 6666665 4556999999999988887766 7888888765
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=201.09 Aligned_cols=194 Identities=19% Similarity=0.297 Sum_probs=158.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--cccccccc---c---------cCCCCC----
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESETI---V---------GQGAPQ---- 215 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~---~---------~~~~~~---- 215 (359)
...+...+-.|+++|.+++|+..| ++|++++.||++.+||..+... .+...... + ....+.
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V 343 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHV 343 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEE
Confidence 334556677899999999999999 8999999999999999855221 11111110 0 001110
Q ss_pred --CCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-----
Q 018235 216 --VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE----- 288 (359)
Q Consensus 216 --~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----- 288 (359)
+....|+.+|.||..+|.+|.|+|.+. +|+|++.|++++||...... .. ..+.+|...|+.+.|+|.+
T Consensus 344 ~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~-~~---~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 344 CKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN-SV---HDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred EEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc-ch---hhhhhhccceeeEeecCCCCccCC
Confidence 134689999999999999999999998 99999999999999987633 32 6789999999999999875
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 289 ---PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 289 ---~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...+++++.|++|++||+..+ .+++.+..|..+|.+++|+|+|++++.+.. ++.|.+|.+.++.+
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~----dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSL----DGCVHIWSTKTGKL 486 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCC----CCeeEeccccchhe
Confidence 347999999999999999998 899999999999999999999999999877 99999999998864
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=205.61 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=172.8
Q ss_pred ccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (359)
Q Consensus 63 ~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 142 (359)
..+.-|.-.+.|.|++ .+|++||++. ...+|...
T Consensus 93 NKvkc~V~~v~WtPeG-----------RRLltgs~SG-----EFtLWNg~------------------------------ 126 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-----------RRLLTGSQSG-----EFTLWNGT------------------------------ 126 (464)
T ss_pred cccccceeeEEEcCCC-----------ceeEeecccc-----cEEEecCc------------------------------
Confidence 4566777788999986 5899999765 56677552
Q ss_pred CCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc
Q 018235 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (359)
Q Consensus 143 d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (359)
.-..+..++.|..+|.++.|++++ ..++||..+|.|++|+... ..+
T Consensus 127 -----------~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnV 172 (464)
T KOG0284|consen 127 -----------SFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNV 172 (464)
T ss_pred -----------eeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhh
Confidence 112335567899999999999999 8999999999999999876 345
Q ss_pred EEecCCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 223 VKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 223 ~~~~~h~-~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
..+.+|. ..|.+++|||... .|+||+.||+|+|||.+.... . +.+.||.-.|.+++|+|.-. ++|++|.|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e---~vL~GHgwdVksvdWHP~kg-LiasgskDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-E---RVLRGHGWDVKSVDWHPTKG-LIASGSKDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-h---heeccCCCCcceeccCCccc-eeEEccCCcee
Confidence 5566665 7999999999887 999999999999999987322 2 56799999999999999988 99999999999
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++||.|++ .++.++..|...|..+.|++++.+|+...+ |..++++|+++
T Consensus 247 KlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~ 295 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRT 295 (464)
T ss_pred EeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhH
Confidence 99999999 899999999999999999999999998876 99999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=196.91 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=153.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.......+.+|+.+|+|++|--++ ++++++.|++|++|+... +.....++||...|+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~d---------------------G~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALD---------------------GKLCRELKGHAHWVN 292 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccc---------------------hhHHHhhcccchhee
Confidence 556778889999999999997766 999999999999999887 678889999999999
Q ss_pred EEEeC-----------CCCC------------------------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC
Q 018235 234 AIDWN-----------PITT------------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (359)
Q Consensus 234 ~l~~s-----------p~~~------------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (359)
.|+.| |.+. .+|+||+.|.++.+|+.....+++ ..+.+|..-
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~l 369 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQAL 369 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhh
Confidence 99887 2222 169999999999999997755554 678999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|+.+.|||++. ++|++|.|++|++||.+++ +-+.++.+|-+.|..++|+.+.++|+.+.. |.++++|++++.++
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~Sk----DsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSK----DSTLKVWDVRTKKL 443 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCC----CceEEEEEeeeeee
Confidence 99999999999 9999999999999999999 788899999999999999999999988766 99999999987654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=198.70 Aligned_cols=171 Identities=23% Similarity=0.362 Sum_probs=150.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|+.++|++....+|+++++|+.+.|||++.. ..++.....+|.+++++++|+
T Consensus 221 ~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-------------------~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 221 TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-------------------TSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-------------------CCCCcccccccCCceeEEEeC
Confidence 4556899999999999999899999999999999999961 156777888999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS------- 311 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~------- 311 (359)
|.+..+|||||.|++|+|||+|+...+ ...+.+|...|..|.|||...++|||++.|+.+.|||+..-..
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKP---LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccC---ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 999989999999999999999986554 3789999999999999999999999999999999999975411
Q ss_pred ------ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ------ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ------~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.++...+|.+.|+.++|+|+..+++.+... |+.+.||++.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae---DN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE---DNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecC---CceEEEeecc
Confidence 234447999999999999999999888774 9999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=184.49 Aligned_cols=173 Identities=20% Similarity=0.289 Sum_probs=149.7
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
-......+.+|...|+.+..++++ +++.+++.|+.+++||+.. +++...|.||...|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVL 109 (315)
T ss_pred cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceE
Confidence 455667888999999999999999 8999999999999999998 688899999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCc
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+++++++.+ +++||+.|.+|++|++....... ..-..|..-|.++.|+|+. ..+|+++|.|++|++||+++. +.
T Consensus 110 sva~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l 184 (315)
T KOG0279|consen 110 SVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QL 184 (315)
T ss_pred EEEecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-ch
Confidence 999999998 99999999999999986522211 1112237889999999994 339999999999999999997 66
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...+.+|+.-++.+.++|+|.+.+.+.. ++.+.+||.+.++
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGK 225 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCc
Confidence 7778999999999999999998877544 8999999998765
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=180.33 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=144.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~ 231 (359)
......++.+|...|.+++|++++ ..++||+.|.+|.+|+.-. .+..+...+ +..
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g----------------------~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG----------------------VCKYTIHEDSHREW 150 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc----------------------cEEEEEecCCCcCc
Confidence 335567889999999999999999 8999999999999999876 444555444 678
Q ss_pred eEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 232 GYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 232 v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
|.++.|+|. .+ +|++++.|+++++||+++ -+.. ..+.||++.|+.+.+||+|. +.++|+.||.+.+||++.+
T Consensus 151 VscvrfsP~~~~p-~Ivs~s~DktvKvWnl~~-~~l~---~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 151 VSCVRFSPNESNP-IIVSASWDKTVKVWNLRN-CQLR---TTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEEEEEcCCCCCc-EEEEccCCceEEEEccCC-cchh---hccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCC
Confidence 999999999 45 999999999999999987 3433 67899999999999999999 9999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.+..+ .|...|++++|+|+...|+... +..|+||+..++.+
T Consensus 225 -k~lysl-~a~~~v~sl~fspnrywL~~at-----~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 225 -KNLYSL-EAFDIVNSLCFSPNRYWLCAAT-----ATSIKIWDLESKAV 266 (315)
T ss_pred -ceeEec-cCCCeEeeEEecCCceeEeecc-----CCceEEEeccchhh
Confidence 566555 5888999999999998888775 45699999887654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=184.22 Aligned_cols=170 Identities=18% Similarity=0.300 Sum_probs=153.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|..+|.++.|++.....+++++-||+|++|+... .+.+.+|.||..-|+...||
T Consensus 98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------------------~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------------------PNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------------------CcceEeecCCccEEEEEecC
Confidence 455689999999999998878888889999999999987 57789999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|..+++++++|.|+++++||++..++.. .+..|...+.++.|+....++++||+.|+.||+||+|+.+.++..+.+
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g 232 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG 232 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC
Confidence 9999999999999999999999987765 378899999999999999999999999999999999998789999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.-.|..|.|+|...-++.+.. .|.+++||+...+
T Consensus 233 h~~AVRkvk~Sph~~~lLaSas---YDmT~riw~~~~~ 267 (311)
T KOG0277|consen 233 HGLAVRKVKFSPHHASLLASAS---YDMTVRIWDPERQ 267 (311)
T ss_pred CceEEEEEecCcchhhHhhhcc---ccceEEecccccc
Confidence 9999999999999877766554 4999999998754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=192.70 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=154.9
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|.|.|.++++.|-+ .+||||+.|+++.|||+.+ ++...++.||...+.+++
T Consensus 143 l~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGVA 200 (460)
T ss_pred ehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeeee
Confidence 445567899999999999987 8999999999999999998 677889999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
+|+..+ +|++++.|+.|+.||+.. .+.+ +.+.||-+.|.+++.+|.-. +|++|+.|.++||||+|+. ..+..+
T Consensus 201 vS~rHp-YlFs~gedk~VKCwDLe~-nkvI---R~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr-~~V~~l 273 (460)
T KOG0285|consen 201 VSKRHP-YLFSAGEDKQVKCWDLEY-NKVI---RHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR-ASVHVL 273 (460)
T ss_pred ecccCc-eEEEecCCCeeEEEechh-hhhH---HHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc-ceEEEe
Confidence 999999 999999999999999977 5554 78999999999999999998 9999999999999999997 788999
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|..+|.++.+.|.+..++.+.. |.+|++||.+.|.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~----D~tvrlWDl~agk 310 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSH----DSTVRLWDLRAGK 310 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecC----CceEEEeeeccCc
Confidence 999999999999999998888766 9999999998875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=181.12 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=169.8
Q ss_pred eeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q 018235 70 LSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEE 149 (359)
Q Consensus 70 ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~ 149 (359)
++++|-+|. .++|.++| +..|.||+.-
T Consensus 59 ~~~~ws~Ds-----------r~ivSaSq-----DGklIvWDs~------------------------------------- 85 (343)
T KOG0286|consen 59 YAMDWSTDS-----------RRIVSASQ-----DGKLIVWDSF------------------------------------- 85 (343)
T ss_pred eeeEecCCc-----------CeEEeecc-----CCeEEEEEcc-------------------------------------
Confidence 688999995 58888886 5589999863
Q ss_pred CCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC
Q 018235 150 GGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229 (359)
Q Consensus 150 ~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 229 (359)
....++.+.--...|..++|+|.+ +++|+|+-|....||++....... .......+.+|+
T Consensus 86 ----TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHt 145 (343)
T KOG0286|consen 86 ----TTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHT 145 (343)
T ss_pred ----cccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCcc
Confidence 112223333446789999999999 899999999999999998621110 124456799999
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..+.+..|-+++ .|+||+.|.++.+||+.+ ++.. ..|.+|.+.|.+++++|...+.|+||+.|++.+|||+|.+
T Consensus 146 gylScC~f~dD~--~ilT~SGD~TCalWDie~-g~~~---~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 146 GYLSCCRFLDDN--HILTGSGDMTCALWDIET-GQQT---QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ceeEEEEEcCCC--ceEecCCCceEEEEEccc-ceEE---EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 999999998854 799999999999999988 5544 6799999999999999955559999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.++++|.+|.++||+|+|.|+|.-++.+.. |.+.+++|.+.+.
T Consensus 220 -~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 220 -QCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRADQ 262 (343)
T ss_pred -ceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecCCc
Confidence 899999999999999999999998888776 9999999998753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=199.61 Aligned_cols=209 Identities=16% Similarity=0.315 Sum_probs=173.5
Q ss_pred hHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCC
Q 018235 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (359)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~ 134 (359)
+-++++. .+.+-|.-++.|.++. .++|.|. ...+|++|+.. ++
T Consensus 128 fnFEtil-QaHDs~Vr~m~ws~~g-----------~wmiSgD-----~gG~iKyWqpn-mn------------------- 170 (464)
T KOG0284|consen 128 FNFETIL-QAHDSPVRTMKWSHNG-----------TWMISGD-----KGGMIKYWQPN-MN------------------- 170 (464)
T ss_pred eeHHHHh-hhhcccceeEEEccCC-----------CEEEEcC-----CCceEEecccc-hh-------------------
Confidence 3444443 3468899999999986 6888887 45689998762 21
Q ss_pred CCCCCCCCCCCcccCCCCCCCeEEEEEec-CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCC
Q 018235 135 SESSDSDEDSDDDEEGGSGTPILQLRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (359)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (359)
.+ ..+.+ |...|.+++|+|.. ..|+|+++||+|+|||+..
T Consensus 171 --------------------nV--k~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~---------------- 211 (464)
T KOG0284|consen 171 --------------------NV--KIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM---------------- 211 (464)
T ss_pred --------------------hh--HHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC----------------
Confidence 11 12224 55999999999977 8999999999999999987
Q ss_pred CCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEE
Q 018235 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (359)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (359)
.++-..+.||.-.|.+++|+|... +||||+.|..|++||+++ ++++ .++.+|+..|..+.|+|++. +|+
T Consensus 212 -----~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprS-g~cl---~tlh~HKntVl~~~f~~n~N-~Ll 280 (464)
T KOG0284|consen 212 -----PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS-GSCL---ATLHGHKNTVLAVKFNPNGN-WLL 280 (464)
T ss_pred -----CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCC-cchh---hhhhhccceEEEEEEcCCCC-eeE
Confidence 466677899999999999999986 999999999999999999 5554 67889999999999999995 999
Q ss_pred EEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 294 SCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|+|.|.+++++|+|+. +.++.+.+|...|+++.|+|-..-|+..... |+.|..|...
T Consensus 281 t~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~---Dgsvvh~~v~ 337 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGS---DGSVVHWVVG 337 (464)
T ss_pred EccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccC---CCceEEEecc
Confidence 9999999999999976 7788899999999999999987766655443 8888888765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=205.91 Aligned_cols=169 Identities=20% Similarity=0.337 Sum_probs=149.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+
T Consensus 197 ~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEec
Confidence 3447899999999999999 7999999999999999955 357789999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-ceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (359)
|.+. +++||+.|++|+|||+++ +++. ..+.+|...|.+++|++++. +|++++.|+.|+|||+.++.. ++..+.
T Consensus 256 p~g~-~i~Sgs~D~tvriWd~~~-~~~~---~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 329 (456)
T KOG0266|consen 256 PDGN-LLVSGSDDGTVRIWDVRT-GECV---RKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLS 329 (456)
T ss_pred CCCC-EEEEecCCCcEEEEeccC-CeEE---EeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeeccc
Confidence 9996 999999999999999988 6655 78999999999999999999 999999999999999999821 355665
Q ss_pred cCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+.. ++++++|+|++.+++.... ++.+++|+.+.+.+
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKS 368 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcc
Confidence 5554 4999999999999998877 88999999987753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=202.46 Aligned_cols=176 Identities=15% Similarity=0.268 Sum_probs=145.5
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+.+|.+.|++++|+|.+..+||+++.||+|+|||+....... ....++..+.+|...|.+++|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 469999999999999444799999999999999997621000 013567889999999999999998
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+..+|+||+.|++|+|||+++ +... ..+.+|...|.+++|+|++. +|++++.|++|+|||+|++ ..+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~t-g~~~---~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVER-GKAV---EVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG-TIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCC-CeEE---EEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC-cEEEEEecCC
Confidence 755999999999999999987 4433 56788999999999999998 9999999999999999997 6777888887
Q ss_pred CC-EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 321 AD-VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 321 ~~-V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.. +..+.|.+++..++....+.+.++.|++||.+..
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 65 4577899988877765544455789999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=183.50 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=191.6
Q ss_pred CCceeeeC---------hhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCC
Q 018235 46 EGEELQCD---------PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISG 116 (359)
Q Consensus 46 ~~~~l~~~---------~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~ 116 (359)
.|-+|+|| |.-|+...-....-||-...+-||+ .++..|+ .+-.|+|+++..+-.
T Consensus 83 ~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~DG-----------~lvATGs-----aD~SIKildvermla 146 (430)
T KOG0640|consen 83 AGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSPDG-----------SLVATGS-----ADASIKILDVERMLA 146 (430)
T ss_pred CceeeeeccccccCCCCCcccceEEEeecccceeeeeeCCCC-----------cEEEccC-----CcceEEEeehhhhhh
Confidence 37778887 6778888888888999999999996 5666665 466899999964432
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECC
Q 018235 117 KRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLR 196 (359)
Q Consensus 117 ~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~ 196 (359)
.. .. .++... +.....|++ .++..|..+||++.|+|.. .++++++.|++|++||+.
T Consensus 147 ks-~~------------~em~~~---------~~qa~hPvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 147 KS-KP------------KEMISG---------DTQARHPVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFS 202 (430)
T ss_pred hc-ch------------hhhccC---------CcccCCceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecc
Confidence 21 11 011100 000123444 8899999999999999988 899999999999999998
Q ss_pred CCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC
Q 018235 197 SHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~ 276 (359)
+... .+....| ....++.+|+|+|.|. +|+.|..-.++++||+++ -++.+...+-..|+
T Consensus 203 K~sa------------------KrA~K~~-qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T-~QcfvsanPd~qht 261 (430)
T KOG0640|consen 203 KTSA------------------KRAFKVF-QDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHT 261 (430)
T ss_pred cHHH------------------HHHHHHh-hccceeeeEeecCCCc-eEEEecCCCceeEEeccc-eeEeeecCcccccc
Confidence 7321 1112223 2345899999999999 999999999999999988 44444455777899
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCC-CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHN-ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~-~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|++|.+++++. +.+++|.||.|+|||--+. +++.++ .+|. +.|.+..|..++++++.+.. |.++++|++.
T Consensus 262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi~ 335 (430)
T KOG0640|consen 262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEIS 335 (430)
T ss_pred cceeEEEecCCcc-EEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeeec
Confidence 9999999999999 9999999999999998887 788888 6775 57999999999999998765 8999999998
Q ss_pred CCc
Q 018235 355 RGE 357 (359)
Q Consensus 355 ~g~ 357 (359)
+|.
T Consensus 336 t~R 338 (430)
T KOG0640|consen 336 TGR 338 (430)
T ss_pred CCc
Confidence 875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=183.81 Aligned_cols=267 Identities=18% Similarity=0.233 Sum_probs=189.7
Q ss_pred CeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccC---------CCC--------cccCCce-------
Q 018235 34 TKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTL---------GLV--------RNEFPHT------- 89 (359)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~---------~~~--------~~~~~~~------- 89 (359)
+.|+.+... +|-++|...+|-.--+.++.||.-++.+|.-.. +.. ...+|.-
T Consensus 75 fDVi~D~LG----~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h 150 (440)
T KOG0302|consen 75 FDVIPDRLG----DERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPH 150 (440)
T ss_pred eeeecCCCC----cccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccccccc
Confidence 445554443 678999999999999999999999988875320 000 0113421
Q ss_pred -------------EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCe
Q 018235 90 -------------AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPI 156 (359)
Q Consensus 90 -------------~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~ 156 (359)
.-.++++.+ +.+.++|+.+...-+--..+ .. ....+...
T Consensus 151 ~g~~NRvr~~~~~~~~~~asws---e~G~V~Vw~l~~~l~~l~~~---------------~~----------~~~~s~~~ 202 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWS---ENGRVQVWDLAPHLNALSEP---------------GL----------EVKDSEFR 202 (440)
T ss_pred ccccceeeecccCCcceeeeec---ccCcEEEEEchhhhhhhcCc---------------cc----------cccccccC
Confidence 112333333 35677788774221110000 00 00001222
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-.+++.+|.+.=..+.|+|.....++||.--+.|++|..... .+. .-...|.+|+..|..|+
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g--~W~----------------vd~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG--SWK----------------VDQRPFTGHTKSVEDLQ 264 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccC--cee----------------ecCccccccccchhhhc
Confidence 235667999999999999966556888888899999988761 110 11134678999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALT 314 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~ 314 (359)
|||...+.|+||++||+|+|||+|.+.+.. .....+|.+.|+-|+|+...+ +||+|+.||+++|||+|+. .+++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcce
Confidence 999999999999999999999999852221 123478999999999999999 9999999999999999986 35788
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.|.++|++|.|+|...-++.... .|+.|.|||.+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWDlsvE 380 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWDLSVE 380 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEecc---CCCcEEEEEeecc
Confidence 99999999999999998765444433 2999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=173.28 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=138.9
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+.+|+.-|..+.|..+| ..++||++||+++|||++.. ...+.| .|..+|+++..
T Consensus 76 v~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~---------------------~~qR~~-~~~spVn~vvl 132 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL---------------------SCQRNY-QHNSPVNTVVL 132 (311)
T ss_pred eeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc---------------------ccchhc-cCCCCcceEEe
Confidence 35667999999999999999 89999999999999999982 222333 34467777777
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCC---------------------------------------------CcceecCccc
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASD---------------------------------------------ATWNVDPNPF 272 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~---------------------------------------------~~~~~~~~~~ 272 (359)
+|+.. .|++|+.+|.|++||+.+. ...+.++..|
T Consensus 133 hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 77765 7777777777777777642 1123345667
Q ss_pred cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..|...+..+.+||+++ +||+||.|.+++||.+...-+....+.+|...++..+|+.+|.+|+.+.. |+..++|+
T Consensus 212 ~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass----d~~~rlW~ 286 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS----DHTARLWD 286 (311)
T ss_pred ecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC----CCceeecc
Confidence 88999999999999999 99999999999999998862334566899999999999999999998876 89999999
Q ss_pred CcCCc
Q 018235 353 CSRGE 357 (359)
Q Consensus 353 ~~~g~ 357 (359)
.+.++
T Consensus 287 ~~~~k 291 (311)
T KOG0315|consen 287 LSAGK 291 (311)
T ss_pred cccCc
Confidence 99886
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=196.22 Aligned_cols=171 Identities=20% Similarity=0.330 Sum_probs=146.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
.+.+..+|...++++.++|+| .++|||++||.|+|||... +-+..+|..|+..++++.
T Consensus 342 YVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------------gfC~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------------GFCFVTFTEHTSGVTAVQ 399 (893)
T ss_pred eeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC---------------------ceEEEEeccCCCceEEEE
Confidence 335667999999999999999 8999999999999999987 678999999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCc------------------------------------cee----cCccccCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDAT------------------------------------WNV----DPNPFIGHS 276 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~------------------------------------~~~----~~~~~~~h~ 276 (359)
|+..+. .++|.+-||+|+.||+..... |.+ .+..+.||.
T Consensus 400 f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 400 FTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred EEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence 999998 999999999999999964210 000 013456999
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++|.+++|+|.+. +|||+|-|++||+||+-.....+-++ .+..++..++|+|+|+-++...- ++.|.+||+..+
T Consensus 479 gPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTl----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 479 GPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATL----DGQITFFDIKEA 552 (893)
T ss_pred CcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEe----cceEEEEEhhhc
Confidence 9999999999999 99999999999999998763444455 47788999999999999998876 889999998754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=193.77 Aligned_cols=192 Identities=18% Similarity=0.254 Sum_probs=170.3
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCcee
Q 018235 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (359)
Q Consensus 90 ~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (359)
..+|+|+ ++-+|.|+.+. +......+.+|..-|.
T Consensus 68 nWiv~Gs-----DD~~IrVfnyn-----------------------------------------t~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 68 NWIVTGS-----DDMQIRVFNYN-----------------------------------------TGEKVKTFEAHSDYIR 101 (794)
T ss_pred ceEEEec-----CCceEEEEecc-----------------------------------------cceeeEEeecccccee
Confidence 6888888 67799999873 3334567889999999
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
+|+.+|..| ++.|+|+|-+|++||... ...+..+|.||...|.+++|+|..++.+|||+
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~--------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWEN--------------------EWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccC--------------------ceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 999999995 778889999999999998 57888999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
-|++|++|.+-+ ..+. .++.+|...|++|.+-+-+ +.+|+||++|.+|+|||..+. .|+.++.+|...|+.++|
T Consensus 161 LDrTVKVWslgs-~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 161 LDRTVKVWSLGS-PHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred ccccEEEEEcCC-CCCc---eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEe
Confidence 999999999966 3333 7899999999999998765 339999999999999999997 899999999999999999
Q ss_pred cCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 329 NRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 329 s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|.=++++.+.. |++++||+..+-+
T Consensus 236 hp~lpiiisgsE----DGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 236 HPELPIIISGSE----DGTVRIWNSKTYK 260 (794)
T ss_pred cCCCcEEEEecC----CccEEEecCccee
Confidence 999999998876 9999999987644
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=191.29 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=145.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCC------------------------
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG------------------------ 212 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~------------------------ 212 (359)
.++++.+|+..|.++++.|.| ..|+||+.|-+|++||+..............+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 457788899999999999999 8999999999999999987443322211111100
Q ss_pred -----CCCC-----CC----CCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce--ecCccccCCC
Q 018235 213 -----APQV-----SN----QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--VDPNPFIGHS 276 (359)
Q Consensus 213 -----~~~~-----~~----~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~--~~~~~~~~h~ 276 (359)
.++. .+ ..-...-+||...+++.+|+|...+.|+|++.||+++||++....+.. ...+...+-.
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 0000 00 011223478999999999999999999999999999999998643322 1112233455
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEe-ecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSF-KAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~-~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
-+++.++|+|++. +||+|+.||+|.+|+.+.. ..+...+ .+|.. .|+||+|+++|.+|+.... |..+++||
T Consensus 318 v~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~----D~tLKvWD 392 (641)
T KOG0772|consen 318 VPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF----DDTLKVWD 392 (641)
T ss_pred cCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC----CCceeeee
Confidence 6889999999999 8999999999999998765 2344444 78877 9999999999999987765 99999999
Q ss_pred CcC
Q 018235 353 CSR 355 (359)
Q Consensus 353 ~~~ 355 (359)
.+.
T Consensus 393 Lrq 395 (641)
T KOG0772|consen 393 LRQ 395 (641)
T ss_pred ccc
Confidence 875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=191.55 Aligned_cols=212 Identities=13% Similarity=0.148 Sum_probs=161.4
Q ss_pred cCcceeEEEEe-ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 66 ~wP~ls~~~~p-d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.=+.+++.|.| +. .+|+.|+ .++.|.||++..-...
T Consensus 75 ~~~V~~v~fsP~d~-----------~~LaSgS-----~DgtIkIWdi~~~~~~--------------------------- 111 (493)
T PTZ00421 75 EGPIIDVAFNPFDP-----------QKLFTAS-----EDGTIMGWGIPEEGLT--------------------------- 111 (493)
T ss_pred CCCEEEEEEcCCCC-----------CEEEEEe-----CCCEEEEEecCCCccc---------------------------
Confidence 35678889988 42 4677776 5779999988310000
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
. ........+.+|...|.+++|+|.+.++|++++.|++|+|||+.. ..++..
T Consensus 112 --~-----~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---------------------g~~~~~ 163 (493)
T PTZ00421 112 --Q-----NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER---------------------GKAVEV 163 (493)
T ss_pred --c-----ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---------------------CeEEEE
Confidence 0 011123456799999999999998767999999999999999987 566778
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC-eEEEEecCCCCCEEEEEe----CCC
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPTEPDVFASCS----VDG 299 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~las~s----~Dg 299 (359)
+.+|...|++++|+|++. +|++|+.|++|++||+++ +..+ ..+.+|... +..+.|+|.+. .|++++ .|+
T Consensus 164 l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs-g~~v---~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr 237 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD-GTIV---SSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQR 237 (493)
T ss_pred EcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC-CcEE---EEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCC
Confidence 899999999999999998 999999999999999998 4443 456778754 45788999887 555443 489
Q ss_pred cEEEEECCCCCCceEEeecC-CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 300 HIAIWDTRVGKSALTSFKAH-NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|+|||+|....++.....+ ...+....|++++.+++.+.. .++.|++|+...+.
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNER 293 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCCc
Confidence 99999999874555544333 345677789999998877653 28899999998765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=180.69 Aligned_cols=190 Identities=22% Similarity=0.377 Sum_probs=166.2
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCc
Q 018235 88 HTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167 (359)
Q Consensus 88 ~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~ 167 (359)
...+|+.|+ .+..|.||++. ..++..++.+|...
T Consensus 162 ~n~wf~tgs-----~DrtikIwDla-----------------------------------------tg~LkltltGhi~~ 195 (460)
T KOG0285|consen 162 GNEWFATGS-----ADRTIKIWDLA-----------------------------------------TGQLKLTLTGHIET 195 (460)
T ss_pred CceeEEecC-----CCceeEEEEcc-----------------------------------------cCeEEEeecchhhe
Confidence 346888777 56789999983 77888899999999
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|..+++++.. .+++++++|+.|+.||+.. .+.++.+.||-..|++|+.+|.-. .|+|
T Consensus 196 vr~vavS~rH-pYlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~~L~lhPTld-vl~t 252 (460)
T KOG0285|consen 196 VRGVAVSKRH-PYLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVYCLDLHPTLD-VLVT 252 (460)
T ss_pred eeeeeecccC-ceEEEecCCCeeEEEechh---------------------hhhHHHhccccceeEEEeccccce-eEEe
Confidence 9999999988 5788899999999999998 677889999999999999999998 9999
Q ss_pred EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEE
Q 018235 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~ 327 (359)
|+.|.++++||+|+..+ + ..+.||+.+|..|.+.|..+ -+++||.|++||+||++.+ +.+.++..|...|.+++
T Consensus 253 ~grDst~RvWDiRtr~~-V---~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRAS-V---HVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALC 326 (460)
T ss_pred cCCcceEEEeeecccce-E---EEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-ceeEeeecccceeeEEe
Confidence 99999999999998433 3 67999999999999999998 8999999999999999998 78888999999999999
Q ss_pred EcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 328 WNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 328 ~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|....++.++. ..|+-|+...|.
T Consensus 327 lhP~e~~fASas~-----dnik~w~~p~g~ 351 (460)
T KOG0285|consen 327 LHPKENLFASASP-----DNIKQWKLPEGE 351 (460)
T ss_pred cCCchhhhhccCC-----ccceeccCCccc
Confidence 9998877766543 347778766553
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-22 Score=191.15 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=140.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+.+|.+.|++++|+|....+||||+.||+|+|||+........ ....++..+.+|...|.+++|
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------EIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------ccccceEEeecCCCcEEEEEE
Confidence 3566799999999999998558999999999999999975211000 012456678999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|.+..+|+||+.|++|+|||++++ ... ..+. |...|.+++|+|+|. +|++++.|+.|+|||+|++ ..+..+.
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg-~~~---~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg-~~i~tl~ 206 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENE-KRA---FQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ-EIASSFH 206 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCC-cEE---EEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC-cEEEEEe
Confidence 9998756789999999999999874 322 2333 567899999999999 9999999999999999997 7777888
Q ss_pred cCCCCEEE-----EEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AHNADVNV-----ISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h~~~V~~-----i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|.+.+.+ ..|++++.+++.+....+..+.|+|||.+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 99876543 345688888887655333346899999884
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=176.79 Aligned_cols=166 Identities=23% Similarity=0.356 Sum_probs=143.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.++|..+.|++. ..+.+++-|.+|+.||+.. +....++.+ ....++++.+
T Consensus 254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet---------------------g~~~~~~~~-~ksl~~i~~~ 309 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET---------------------GGLKSTLTT-NKSLNCISYS 309 (423)
T ss_pred EEecccccceeeEEEcCC--CceEeecccceEEEEEeec---------------------ccceeeeec-CcceeEeecc
Confidence 466799999999999994 5899999999999999998 455555554 3478899999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|... +|++|+.|..|++||+|+++..+ ..+.|.+|+.-|.++.|+|.+.+.|++++.|+++++||+|+...++..+.+
T Consensus 310 ~~~~-Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 310 PLSK-LLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cccc-eeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 9887 99999999999999999965433 357899999999999999999999999999999999999998669999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|...|.++.|+. +.+++.+.. |+.|+|+....
T Consensus 388 h~DKvl~vdW~~-~~~IvSGGa----D~~l~i~~~~~ 419 (423)
T KOG0313|consen 388 HNDKVLSVDWNE-GGLIVSGGA----DNKLRIFKGSP 419 (423)
T ss_pred CCceEEEEeccC-CceEEeccC----cceEEEecccc
Confidence 999999999995 556676665 99999987653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=189.97 Aligned_cols=203 Identities=20% Similarity=0.330 Sum_probs=168.6
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
.+..+.|.||. .+++.|+ .+..|.||++.
T Consensus 205 ~v~~~~fs~d~-----------~~l~s~s-----~D~tiriwd~~----------------------------------- 233 (456)
T KOG0266|consen 205 GVSDVAFSPDG-----------SYLLSGS-----DDKTLRIWDLK----------------------------------- 233 (456)
T ss_pred ceeeeEECCCC-----------cEEEEec-----CCceEEEeecc-----------------------------------
Confidence 35566666764 4777777 57799999882
Q ss_pred cCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
........+.+|...|+++.|+|++ +++++|+.|++|+|||+.. ..++..+.+
T Consensus 234 -----~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---------------------~~~~~~l~~ 286 (456)
T KOG0266|consen 234 -----DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---------------------GECVRKLKG 286 (456)
T ss_pred -----CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC---------------------CeEEEeeec
Confidence 1335667788999999999999999 9999999999999999997 688999999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
|...|.+++|++++. +|++++.|+.|++||+.++.. +. ..+.++.. .++.++|+|++. +|++++.|+.+++|
T Consensus 287 hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCL---KLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLW 361 (456)
T ss_pred cCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeee---ecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEE
Confidence 999999999999998 999999999999999988432 12 34555554 499999999999 99999999999999
Q ss_pred ECCCCCCceEEeecCCCCE---EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSFKAHNADV---NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V---~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|++.. ..+..+..|...+ .+...++.+.+++.+.. ++.|.+|+..++.+
T Consensus 362 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 362 DLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSGGI 413 (456)
T ss_pred EccCC-cceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCccch
Confidence 99988 7777887787653 34455678888888877 99999999987653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=193.08 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=153.6
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+..+..+|.+.|.+++++..+..+|+++|.|+++++|++......- .+. ......+...|...|+++
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~~~-----------~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-FPI-----------VLTCRYTERAHDKDINCV 469 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-ccc-----------eehhhHHHHhhcccccce
Confidence 34456679999999999998888999999999999999998711000 000 011222456799999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.+|... ++||||.|.+.+||++.+ .... ..+.||+..|.||+|+|..+ ++||||.|++|+||.+.+. .++.+
T Consensus 470 aia~ndk-LiAT~SqDktaKiW~le~-~~l~---~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f-SClkT 542 (775)
T KOG0319|consen 470 AIAPNDK-LIATGSQDKTAKIWDLEQ-LRLL---GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF-SCLKT 542 (775)
T ss_pred EecCCCc-eEEecccccceeeecccC-ceEE---EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc-eeeee
Confidence 9999998 999999999999999985 4444 78999999999999999999 9999999999999999998 89999
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+|.+.|..++|-.+++.++.+.+ ++.+++|++.+++
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~a----dGliKlWnikt~e 580 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGA----DGLIKLWNIKTNE 580 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccC----CCcEEEEeccchh
Confidence 9999999999999999999999887 9999999998875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=181.64 Aligned_cols=239 Identities=15% Similarity=0.191 Sum_probs=178.9
Q ss_pred hhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCC
Q 018235 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (359)
Q Consensus 60 ~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 139 (359)
-|-+-|.-+-|++.|+--....... ..|+++||. +..|.||++--........ .-+.- .
T Consensus 167 HHD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtm-----dp~IeIWDLDI~d~v~P~~------~LGs~----~-- 225 (463)
T KOG0270|consen 167 HHDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTM-----DPEIEIWDLDIVDAVLPCV------TLGSK----A-- 225 (463)
T ss_pred ecceeccCcchhhhhhhcCCCCCCC----cceEEEecc-----CceeEEeccccccccccce------eechh----h--
Confidence 3445566667899998653222221 259999995 4489999984221110000 00000 0
Q ss_pred CCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCC
Q 018235 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (359)
Q Consensus 140 ~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (359)
.-.. .+..+.-....+|+..|-.+.|+..-.++||+||.|.+|.+||+.. +
T Consensus 226 ----sk~~----~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~---------------------g 276 (463)
T KOG0270|consen 226 ----SKKK----KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT---------------------G 276 (463)
T ss_pred ----hhhh----hhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC---------------------C
Confidence 0000 0011111223479999999999988889999999999999999998 7
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
+|..++..|..+|.+|+|+|..+..|++|+.|+++.|.|.|..+.. .....-.+.|+.+.|.|...+.|.++..||
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccceEEEEecCCCceeEEEecCCc
Confidence 9999999999999999999999989999999999999999963321 122235678999999999999999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|+-+|+|+..+++.++++|.++|.+|++|...+.++.... .+..+++|+...
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDV 405 (463)
T ss_pred eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecC
Confidence 99999999988899999999999999999998887665543 399999998653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=174.62 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=145.8
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|+|.|++++|+|+| ..||||+.|..|.+|+... ..+...++++|.+.|..+.|.+
T Consensus 42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g--------------------dceN~~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG--------------------DCENFWVLKGHSGAVMELHGMR 100 (338)
T ss_pred hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc--------------------cccceeeeccccceeEeeeecc
Confidence 556999999999999988 8999999999999999776 2455678889999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
++. .|+|++.|.+|+.||.++ ++.. +.+.+|..-|+.++-+..|..++.|++.||+++|||+|+. .+++++. .
T Consensus 101 d~s-~i~S~gtDk~v~~wD~~t-G~~~---rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~ 173 (338)
T KOG0265|consen 101 DGS-HILSCGTDKTVRGWDAET-GKRI---RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-N 173 (338)
T ss_pred CCC-EEEEecCCceEEEEeccc-ceee---ehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-c
Confidence 998 999999999999999998 5554 6789999999999977778889999999999999999986 6665553 4
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...++++.|+..+..++.+.- |+.|++||++.+.+
T Consensus 174 kyqltAv~f~d~s~qv~sggI----dn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGI----DNDIKVWDLRKNDG 208 (338)
T ss_pred ceeEEEEEecccccceeeccc----cCceeeeccccCcc
Confidence 556999999999988888776 88899999987654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-23 Score=178.55 Aligned_cols=225 Identities=18% Similarity=0.261 Sum_probs=178.1
Q ss_pred eeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEe---ecCCCCCCceEEEEEeeccCCcccCCCCCCCC
Q 018235 51 QCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAG---TQAEKPSWNSIGVFKVSNISGKRRELVPNKPS 127 (359)
Q Consensus 51 ~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~G---T~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~ 127 (359)
..=|.+|.-+++..-.|-|=-+-.-+-.- ++...-..|++-- .--++..+|.|.||+..
T Consensus 164 ~l~pki~~di~~idsNWr~Gr~~~~rinc---~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n--------------- 225 (499)
T KOG0281|consen 164 LLYPKIIQDIETIESNWRCGRHLLQRINC---RSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN--------------- 225 (499)
T ss_pred hhhHHHHHHHhhhhcchhccceeeeeecC---CcccCCceEEEEecchhhhcccccCceEEeccc---------------
Confidence 33468899999999999886555443321 2222223444321 11234478899999773
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc
Q 018235 128 NDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET 207 (359)
Q Consensus 128 ~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~ 207 (359)
.-.+...+.+|+|.|.|+.|.. .++++|+.|.+|+|||...
T Consensus 226 --------------------------~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t---------- 266 (499)
T KOG0281|consen 226 --------------------------SLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT---------- 266 (499)
T ss_pred --------------------------cHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------
Confidence 3334467789999999999975 6999999999999999998
Q ss_pred cccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC
Q 018235 208 IVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (359)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (359)
++|+.++.+|...|..+.|+. |+++|++.|.+|.+||+..+.. ....+.+.||.+.|+.|+|+.
T Consensus 267 -----------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 267 -----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD- 330 (499)
T ss_pred -----------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc-
Confidence 899999999999999999975 5999999999999999987442 222366889999999999964
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ +++++|.|++|++|++.+. ..+.++.+|.-.|-|+.++ +++++.+.. |++|++||+..|.
T Consensus 331 -k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSS----DntIRlwdi~~G~ 391 (499)
T KOG0281|consen 331 -K-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGA 391 (499)
T ss_pred -c-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCC----CceEEEEeccccH
Confidence 4 9999999999999999998 8889999999999998876 788887766 9999999998875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=188.86 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=186.4
Q ss_pred CCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEe
Q 018235 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (359)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~ 111 (359)
...++|...+- .++-++..+ =.|..-++|.. .|+|+|+ ..+.|.|+++
T Consensus 394 ~SikiWn~~t~---------------kciRTi~~~-y~l~~~Fvpgd-----------~~Iv~G~-----k~Gel~vfdl 441 (888)
T KOG0306|consen 394 ESIKIWNRDTL---------------KCIRTITCG-YILASKFVPGD-----------RYIVLGT-----KNGELQVFDL 441 (888)
T ss_pred CcEEEEEccCc---------------ceeEEeccc-cEEEEEecCCC-----------ceEEEec-----cCCceEEEEe
Confidence 44678877655 556666555 34667777764 6999999 4568999998
Q ss_pred eccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEE
Q 018235 112 SNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQ 191 (359)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~ 191 (359)
. ...+.-...+|.|.|+.+...|++ ..++|||.|.+|+
T Consensus 442 a-----------------------------------------S~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVk 479 (888)
T KOG0306|consen 442 A-----------------------------------------SASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVK 479 (888)
T ss_pred e-----------------------------------------hhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEE
Confidence 4 112223344899999999999999 7899999999999
Q ss_pred EEECCCCcccccccc------------------ccccCC-----------CCCC-----CCCCCcEEecCCCCceEEEEe
Q 018235 192 VWDLRSHLNALAESE------------------TIVGQG-----------APQV-----SNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 192 iwd~~~~~~~~~~~~------------------~~~~~~-----------~~~~-----~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+||+..... ..+.. ...... ..++ ...+...++.||.-+|.+|+.
T Consensus 480 fWdf~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 999754211 00000 000000 1111 334555678899999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
||++. +++|||.|.+|++|-+.- +.+. +.|.+|..+|.+|+|.|... +|.||+.|+.|+-||-... ..++.+.
T Consensus 559 S~DSk-livTgSADKnVKiWGLdF-GDCH---KS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF-e~iq~L~ 631 (888)
T KOG0306|consen 559 SPDSK-LIVTGSADKNVKIWGLDF-GDCH---KSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF-EEIQKLD 631 (888)
T ss_pred cCCcC-eEEeccCCCceEEecccc-chhh---hhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhh-hhheeec
Confidence 99999 999999999999999876 5554 68899999999999999766 9999999999999999988 7899999
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+|...|+|++.+|+|.+++.+.. |..|++|.-...
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~sh----D~sIRlwE~tde 666 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSH----DKSIRLWERTDE 666 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccC----CceeEeeeccCc
Confidence 99999999999999999998877 999999986543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=190.47 Aligned_cols=164 Identities=16% Similarity=0.253 Sum_probs=150.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
....|...||+++++|.. .+|||||.|.+.+||++.. ...+.++.||+..++++.|+|
T Consensus 458 t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~---------------------~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ---------------------LRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred HHHhhcccccceEecCCC-ceEEecccccceeeecccC---------------------ceEEEEeeCCccceEEEEecc
Confidence 556799999999999998 8999999999999999986 577889999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
... .++|+|.|++|+||.+.+ ..++ .+|.||+..|..++|-.++. .|+||+.||.|+||++.+. .|+.++.+|
T Consensus 516 ~dq-~laT~SgD~TvKIW~is~-fSCl---kT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~-eC~~tlD~H 588 (775)
T KOG0319|consen 516 NDQ-LLATCSGDKTVKIWSIST-FSCL---KTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN-ECEMTLDAH 588 (775)
T ss_pred ccc-eeEeccCCceEEEEEecc-ceee---eeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch-hhhhhhhhc
Confidence 998 999999999999999988 4444 78999999999999999999 9999999999999999998 899999999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..|+.++-++....++.+.. |+.|.+|.-.+.
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~----Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGG----DGRIIFWKDVTE 621 (775)
T ss_pred cceeEEEeecCccceeEecCC----CeEEEEeecCcH
Confidence 999999999999998877766 899999975543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=171.59 Aligned_cols=169 Identities=19% Similarity=0.324 Sum_probs=151.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
......++.+|..-|..++.+.+| .++|+++.|.+|++|-+.. ..+...+..|..++.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t---------------------~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT---------------------KQCKAELREHEHPVE 281 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc---------------------chhhhhhhccccceE
Confidence 556778899999999999999999 8999999999999999987 556677889999999
Q ss_pred EEEeCCCC--------------CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 234 AIDWNPIT--------------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 234 ~l~~sp~~--------------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
+++|.|.. ..++++++.|++|++||+.+ +.++ .++.+|...|.+++|+|.|+ +|+||.+|+
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL---~tL~ghdnwVr~~af~p~Gk-yi~ScaDDk 356 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCL---FTLVGHDNWVRGVAFSPGGK-YILSCADDK 356 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEE---EEEecccceeeeeEEcCCCe-EEEEEecCC
Confidence 99997742 12899999999999999988 5555 68999999999999999999 999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++++||+++. +++..+.+|...|+++.|+.+-.+++.+.- +..+++|..+
T Consensus 357 tlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV----dqt~KvwEcr 406 (406)
T KOG0295|consen 357 TLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSV----DQTVKVWECR 406 (406)
T ss_pred cEEEEEeccc-eeeeccCCCcceeEEEecCCCCceEEeccc----cceeeeeecC
Confidence 9999999998 899999999999999999999998888765 8889999764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=165.90 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=143.9
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
-+|+..|.+++|+|.+ ++||++|.|.++.||.-... ..+.+.++.||..+|-+++||+.|
T Consensus 58 ~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~-------------------efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG-------------------EFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC-------------------ceeEEeeeeccccceeEEEEcCCC
Confidence 3799999999999999 79999999999999976541 246788999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceEEeecC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKAH 319 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~h 319 (359)
. +||+|+.|+.|.||.+......- ....++.|++.|-.+.|||... +|+|||.|.+|++|+-... -.+++++.+|
T Consensus 118 ~-~LATCSRDKSVWiWe~deddEfe-c~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 118 N-YLATCSRDKSVWIWEIDEDDEFE-CIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGH 194 (312)
T ss_pred C-EEEEeeCCCeEEEEEecCCCcEE-EEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence 8 99999999999999998644432 2366889999999999999998 9999999999999987633 1478889999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
...|++++|++.|..++.... |+.++||..
T Consensus 195 ~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~ 224 (312)
T KOG0645|consen 195 ENTVWSLAFDNIGSRLVSCSD----DGTVSIWRL 224 (312)
T ss_pred cceEEEEEecCCCceEEEecC----CcceEeeee
Confidence 999999999999988777665 899999973
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=170.15 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=149.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+..|++.|.++..+|+. +++|||+.|..-+||++.. +.....+.+|...|.++.|
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSF 114 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEE
Confidence 36778999999999999955 8999999999999999998 5677899999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|.++. +||||+.+|.|+||...++... .++..--..+.-+.|||... +|++|+.||.|-+|.+.+. ...+.+.
T Consensus 115 shdgt-lLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~kv~~ 187 (399)
T KOG0296|consen 115 SHDGT-LLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALCKVMS 187 (399)
T ss_pred ccCce-EEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-ceeeEec
Confidence 99998 9999999999999999874332 34444567888999999887 9999999999999999986 5667789
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|++++++-.|.|+|+.++.+.. +++|++|++.+|..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQP 224 (399)
T ss_pred CCCCCcccccccCCCceEEEEec----CceEEEEecCCCce
Confidence 99999999999999999999987 99999999998853
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=181.39 Aligned_cols=173 Identities=17% Similarity=0.275 Sum_probs=153.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+..+...+.--.-+|.+.+|.+.. +.+++|++|..|+||++.+ ...+..|..|.+.|.
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIR 101 (794)
T ss_pred cceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeecccccee
Confidence 445555555566789999998877 8999999999999999998 678899999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+|+.+|..+ +++|+|.|-+|++||....-.+ .++|.||+.-|.+|+|+|..++.|||||-|++|+||.+.+. .+.
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~---~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWENEWAC---EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccCceee---eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 999999999 9999999999999999754333 37899999999999999999999999999999999999987 889
Q ss_pred EEeecCCCCEEEEEEcCCC--CeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCW--LAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~--~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.++.+|...|||+.|-+-| ++++.+.. |.++++||..+..
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKS 218 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHH
Confidence 9999999999999998755 68888876 9999999987643
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-23 Score=193.91 Aligned_cols=166 Identities=20% Similarity=0.371 Sum_probs=146.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
-.++.|.|.....++|||++..|.|.+||+.... ..+.+..|..|...++.++|++..+.+|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 4677788886557899999999999999998732 2355678999999999999999999999
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
+||+.||+|++||+|.... . .++.+...+|.+|+|+|...+.|+++.+.|.+++||+|...++...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S-~---~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS-K---STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc-c---ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999998433 2 56778889999999999999899999999999999999987788889999999999
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.|+|++.+|+++.+ |+.++||+...+.
T Consensus 226 ~nwhPnr~~lATGGR----DK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 226 LNWHPNREWLATGGR----DKMVKIWDMTDSR 253 (839)
T ss_pred EeecCCCceeeecCC----CccEEEEeccCCC
Confidence 999999999998887 9999999987543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-22 Score=193.28 Aligned_cols=230 Identities=20% Similarity=0.281 Sum_probs=176.0
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
-+|+|+-||. ..+..|.|-. +..+.||....+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~---d~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVL---DGGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCccc---cccceeeccccccchhh-------------------------hhhc
Confidence 5799999985 5788888765 33455898753321111 1111
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCC-ccccccccccccCCCCCCCCCCCcEEecC
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSH-LNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.-|.+..+...|.++|+|++|+|+| .+||+|++|+.|.||..... ..... ...++...+...+.+.++.+
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~f----gs~g~~~~vE~wk~~~~l~~ 127 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVF----GSTGGAKNVESWKVVSILRG 127 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccc----cccccccccceeeEEEEEec
Confidence 1466668888999999999999999 89999999999999998851 00000 01122233346778899999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|...|..++|+|++. +|+|++.|++|.||+.++. ..+ ..+.+|.+.|-.+.|.|.|+ +||+-+.|++|+||++.
T Consensus 128 H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF-~~~---~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF-ELL---KVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTS 201 (942)
T ss_pred CCCccceeccCCCcc-EEEEecccceEEEEccccc-eee---eeeecccccccceEECCccC-eeeeecCCceEEEEEcc
Confidence 999999999999998 9999999999999999986 444 78999999999999999999 99999999999999977
Q ss_pred CCCCceEEeecC------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 308 VGKSALTSFKAH------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 308 ~~~~~~~~~~~h------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.- ...+.+..+ ...+..++|+|+|.+|+...+..+...++.|.+-
T Consensus 202 dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 202 DW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 64 444454332 3457899999999999987766555666777654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-22 Score=189.80 Aligned_cols=172 Identities=19% Similarity=0.303 Sum_probs=149.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+-.|...|+++.|++..+++|+||+.||+|++||++. .+...++.+....|..+.|+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------------------~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------------------KKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------------------ccccccccccchhhhceeec
Confidence 455679999999999999999999999999999999998 45566777888899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~ 317 (359)
|.....|+++...|.+.+||+|....+. ..+.+|.++|.++.|+|++. +||||+.|+.|+|||.... ..++.++.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCE---KKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHH---HHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe
Confidence 9888899999999999999999977776 67899999999999999777 9999999999999999865 23455554
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..++|.++.|-|..++.+..+. +..+..|.+||+++--
T Consensus 262 -Tiapv~rVkWRP~~~~hLAtcs-mv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 262 -TIAPVGRVKWRPARSYHLATCS-MVVDTSVHVWDVRRPY 299 (839)
T ss_pred -ecceeeeeeeccCccchhhhhh-ccccceEEEEeecccc
Confidence 4678999999999998877664 4558899999998753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=165.80 Aligned_cols=202 Identities=21% Similarity=0.324 Sum_probs=166.8
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-|..++.|.|+. .++++|+ .++.|.|+++.
T Consensus 9 ~~~i~~~~~~~~~-----------~~l~~~~-----~~g~i~i~~~~--------------------------------- 39 (289)
T cd00200 9 TGGVTCVAFSPDG-----------KLLATGS-----GDGTIKVWDLE--------------------------------- 39 (289)
T ss_pred CCCEEEEEEcCCC-----------CEEEEee-----cCcEEEEEEee---------------------------------
Confidence 3577889998874 4677776 36789999883
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
..........|...+..+.|+|++ ..+++++.+|.|++|++.. ...+..+
T Consensus 40 --------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~ 89 (289)
T cd00200 40 --------TGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTL 89 (289)
T ss_pred --------CCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEE
Confidence 111334556899999999999998 7899999999999999987 4566778
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
..|...+.++.|++.+. ++++++.+|.|++|++++ .... ..+..|...|.+++|+|++. ++++++.++.|++||
T Consensus 90 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVET-GKCL---TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCC-cEEE---EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEE
Confidence 88998999999999976 888888899999999986 3333 45668999999999999977 888888899999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.. .++..+..|...|.+++|+|++..++.+.. ++.+++|+.+.+.
T Consensus 164 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~ 210 (289)
T cd00200 164 LRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGK 210 (289)
T ss_pred cccc-ccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCc
Confidence 9976 677778889989999999999988887765 7889999988654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-23 Score=185.79 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=151.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+.+.+.+|+..|++++|.|...++|++|+.|+.|+||++.. ...++.+|.||..+|.++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd~ 264 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRDA 264 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhhh
Confidence 355778899999999999994449999999999999999987 478899999999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+..+. .|+|++.|+.|++||+.+ ++.. ..|. -...++|+.|+|++.++|++|+.|+.|+.||+|++ +.++.
T Consensus 265 ~~s~~g~-~fLS~sfD~~lKlwDtET-G~~~---~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe 337 (503)
T KOG0282|consen 265 SFNNCGT-SFLSASFDRFLKLWDTET-GQVL---SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE 337 (503)
T ss_pred hccccCC-eeeeeecceeeeeecccc-ceEE---EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence 9999998 999999999999999988 5544 2332 23567999999999889999999999999999998 78888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..|-+.|+.|.|-++|..++.+.. +..++||+.+.+
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSD----dks~riWe~~~~ 374 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSD----DKSVRIWENRIP 374 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeecc----CccEEEEEcCCC
Confidence 8999999999999999999998877 889999997764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-22 Score=189.50 Aligned_cols=181 Identities=17% Similarity=0.321 Sum_probs=142.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc------c-------------c-----cc-----cccccc---
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------A-------------L-----AE-----SETIVG--- 210 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~-------------~-----~~-----~~~~~~--- 210 (359)
+|.|.|+++.|+++| .++|+|+.||.|+||.+..... . . .. ......
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999998765110 0 0 00 000000
Q ss_pred CCCC-------CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE
Q 018235 211 QGAP-------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (359)
Q Consensus 211 ~~~~-------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (359)
.... .....+|++.|.||.+.|..|+||..+ +|+|++.|.+|+||.+.. ..++ ..| .|..-|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~-~~CL---~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR-KECL---KVF-SHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCC-ccee---eEE-ecCCeeEEEE
Confidence 0000 013467889999999999999999875 899999999999999976 4444 444 5999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+|....+|++||-||.||||++-.. .+........-|++++|.|+|++.+.++- ++.+++++++...
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 99998889999999999999999874 45455444577999999999999999876 7788888876543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=169.31 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=151.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...++|.-.|.++.|.|.| ..|++++.|.+|+.|++.. +.++.+|.+|...+.-++.+
T Consensus 187 ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t---------------------g~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT---------------------GYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred HHhcCcccceeeEEEEecC-CeeeecccccceeEEeccc---------------------ceeEEeccCchHhEEEEEec
Confidence 4556899999999999999 8999999999999999998 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC--------------CCEEEEEeCCCcEEEE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------PDVFASCSVDGHIAIW 304 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------~~~las~s~Dg~I~iw 304 (359)
.+|. ++|||+.|.++++|-+.+ ..+. ..+..|..+|++++|-|.. ..++++++.|++|++|
T Consensus 245 ~DGt-i~As~s~dqtl~vW~~~t-~~~k---~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 245 QDGT-IIASCSNDQTLRVWVVAT-KQCK---AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred CCee-EEEecCCCceEEEEEecc-chhh---hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9998 999999999999999877 4443 5688999999999997641 2389999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.++ .++.++.+|...|..++|+|.|++|+.... |+++++||.+++.
T Consensus 320 dv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD----Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 320 DVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCAD----DKTLRVWDLKNLQ 367 (406)
T ss_pred eccCC-eEEEEEecccceeeeeEEcCCCeEEEEEec----CCcEEEEEeccce
Confidence 99998 899999999999999999999999998776 9999999998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=163.32 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=142.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|.+.|..+.|++++ ..+++++.|.+|+.||... ++.++.+++|..-+++++-+..+
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCccccC
Confidence 3999999999999999 7899999999999999998 78889999999999999977777
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
..++.||+.||+++|||+|+... + +.+ ..+..++++.|.-.+. -+.+|+-|+.|++||+|.. ..+..+.+|..
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~k~~-~---~t~-~~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~-d~~~~lsGh~D 217 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRKKEA-I---KTF-ENKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKN-DGLYTLSGHAD 217 (338)
T ss_pred CeEEEecCCCceEEEEeecccch-h---hcc-ccceeEEEEEeccccc-ceeeccccCceeeeccccC-cceEEeecccC
Confidence 77899999999999999997332 2 233 3467899999998888 8889999999999999987 78888999999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|+.|+.+|+|.+++...- ++++++||.+.
T Consensus 218 tIt~lsls~~gs~llsnsM----d~tvrvwd~rp 247 (338)
T KOG0265|consen 218 TITGLSLSRYGSFLLSNSM----DNTVRVWDVRP 247 (338)
T ss_pred ceeeEEeccCCCccccccc----cceEEEEEecc
Confidence 9999999999999887654 88999999764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=175.90 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=144.9
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+.+|+.+|+.+.|+|++..++++|++|+.+++||+.. ...+..+.+|++.|.+.
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---------------------a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---------------------AYVQAELSGHTDYVRCG 159 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---------------------cEEEEEecCCcceeEee
Confidence 344677899999999999999989999999999999999998 23356889999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+|....+++||+.||.|++||++....++ ..+ .|..+|+.+.+-|.|. +||+|+. ..|++||+-++.+.+..
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v---~el-nhg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRV---VEL-NHGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCcee---EEe-cCCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCceehhh
Confidence 9999988799999999999999999854544 333 5999999999999998 9998876 47999999987455555
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..|...|+|+.+..++..|+.+.- |+.+++++..+-+
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKVfd~t~~K 271 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSL----DRHVKVFDTTNYK 271 (487)
T ss_pred hhcccceEEEEEeecCCceEeeccc----ccceEEEEccceE
Confidence 5559999999999999988877654 8899999965543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-20 Score=162.97 Aligned_cols=161 Identities=24% Similarity=0.437 Sum_probs=139.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|.+.|.++.|+|.+ .++++++.+|.|++||+.. .+++..+..|...+.++.|+
T Consensus 129 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT---------------------GKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc---------------------cccceeEecCccccceEEEC
Confidence 4445799999999999987 7888888899999999986 46677788898899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++. .|++++.++.|++||++. +... ..+..|...+.+++|+|++. ++++++.+|.|++||++++ ..+..+..
T Consensus 187 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~---~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~-~~~~~~~~ 259 (289)
T cd00200 187 PDGE-KLLSSSSDGTIKLWDLST-GKCL---GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG-ECVQTLSG 259 (289)
T ss_pred CCcC-EEEEecCCCcEEEEECCC-Ccee---cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc-eeEEEccc
Confidence 9997 888888899999999986 4433 45667888999999999966 8888888999999999986 67777788
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
|...|.+++|++++.+++.+.. ++.+++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~----d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSA----DGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecC----CCeEEecC
Confidence 9999999999999998888766 88999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=186.71 Aligned_cols=170 Identities=19% Similarity=0.263 Sum_probs=150.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
-..++.++-.|.|+|..|.|+|++ -+|+||++|-.|++|++.. .++++++.||-+.|.
T Consensus 40 M~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~---------------------rrclftL~GHlDYVR 97 (1202)
T KOG0292|consen 40 MGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT---------------------RRCLFTLLGHLDYVR 97 (1202)
T ss_pred hhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc---------------------ceehhhhccccceeE
Confidence 445667777999999999999999 6999999999999999998 789999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
.+.|++.-+ .++|+|.|.+|+||+..+ ++++ ..++||...|.|.+|+|.+. +++|+|-|.+|||||+....
T Consensus 98 t~~FHheyP-WIlSASDDQTIrIWNwqs-r~~i---avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 98 TVFFHHEYP-WILSASDDQTIRIWNWQS-RKCI---AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred EeeccCCCc-eEEEccCCCeEEEEeccC-CceE---EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccC
Confidence 999999999 999999999999999987 5555 68999999999999999998 99999999999999985321
Q ss_pred -C----------------------ce--EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 -S----------------------AL--TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 -~----------------------~~--~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
. .+ +.+.+|.-.||-++|+|.-++++.+.. |..+++|..+.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D----DRqVKlWrmne 237 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNE 237 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC----cceeeEEEecc
Confidence 0 11 224789999999999999999998876 99999998764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=176.60 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=150.9
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+.++++|.|+. ..+|+.|. .++.|.||++..-...
T Consensus 74 ~~~V~~lafsP~~----------~~lLASgS-----~DgtIrIWDi~t~~~~---------------------------- 110 (568)
T PTZ00420 74 TSSILDLQFNPCF----------SEILASGS-----EDLTIRVWEIPHNDES---------------------------- 110 (568)
T ss_pred CCCEEEEEEcCCC----------CCEEEEEe-----CCCeEEEEECCCCCcc----------------------------
Confidence 4578899998863 14677776 5779999988410000
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.... ..+ ...+.+|.+.|++++|+|.+..++||++.||+|+|||+.. ...+..+
T Consensus 111 ~~~i---~~p--~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---------------------g~~~~~i 164 (568)
T PTZ00420 111 VKEI---KDP--QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---------------------EKRAFQI 164 (568)
T ss_pred cccc---ccc--eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC---------------------CcEEEEE
Confidence 0000 022 2345689999999999999877889999999999999987 3444555
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEE-----EecCCCCCEEEEEeCCC-
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL-----QWSPTEPDVFASCSVDG- 299 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v-----~~sp~~~~~las~s~Dg- 299 (359)
. |...+++++|+|++. +|++++.|+.|+|||+++ +..+ ..+.+|.+.+... .|++++. +|++++.|+
T Consensus 165 ~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs-g~~i---~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~ 237 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK-QEIA---SSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN 237 (568)
T ss_pred e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-CcEE---EEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC
Confidence 4 556899999999998 999999999999999998 4444 5678898765433 3457877 777777664
Q ss_pred ---cEEEEECCCCCCceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 300 ---HIAIWDTRVGKSALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 300 ---~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|+|||+|....++..+. .+.+.+...-..+.+.+++++.. |+.|++|+...+.
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG----D~tIr~~e~~~~~ 296 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG----DGNCRYYQHSLGS 296 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC----CCeEEEEEccCCc
Confidence 799999997546665553 23333333333445777776655 9999999987664
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=168.99 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=153.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccc----ccccccc-------------CCCCCC--
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA----ESETIVG-------------QGAPQV-- 216 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~----~~~~~~~-------------~~~~~~-- 216 (359)
......-.|...++-++|+|.| .++|+|...|+|+|||.......+. ....... .+.++-
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 3344556799999999999999 8999999999999999876322111 0000000 000000
Q ss_pred ------CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC
Q 018235 217 ------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 217 ------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
..+..+-.+.||...+.+++|-|..+.+++||+.|++|.+|+=.- -+.. ..+..|..-|+|+.|+|+|.
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk---~s~r~HskFV~~VRysPDG~- 203 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFK---SSFREHSKFVNCVRYSPDGS- 203 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeee---ecccccccceeeEEECCCCC-
Confidence 345566778999999999999999999999999999999997432 2222 56778999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEee---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFK---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|||++.||.|.|||-.++ ..+..+. +|.+.|..|+|+|++..++...+ |.+++|||+.+.++
T Consensus 204 ~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSL 269 (603)
T ss_pred eEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccce
Confidence 9999999999999999998 6777775 99999999999999999998887 99999999998764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=157.56 Aligned_cols=172 Identities=19% Similarity=0.346 Sum_probs=142.4
Q ss_pred eEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGY 233 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~ 233 (359)
.++..+.+|++.|+.++|+|- | .+||||+.|..|+||+.... . ...+..++ .+|+..|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~-~-----------------s~~ck~vld~~hkrsVR 65 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSG-D-----------------SWTCKTVLDDGHKRSVR 65 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCC-C-----------------cEEEEEeccccchheee
Confidence 455778899999999999998 5 79999999999999998841 0 01222222 47999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--C
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~ 311 (359)
.++|+|.++ +|++||.|.++.||.-.. +.+.. ...+.||...|-+++|+++|. +||+|+.|++|-||.+.... .
T Consensus 66 svAwsp~g~-~La~aSFD~t~~Iw~k~~-~efec-v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 66 SVAWSPHGR-YLASASFDATVVIWKKED-GEFEC-VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeeecCCCc-EEEEeeccceEEEeecCC-CceeE-EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEE
Confidence 999999999 999999999999997653 43332 367899999999999999999 99999999999999998542 3
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++..+..|..+|..+.|+|...+|+...- |++|++|.-.
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SY----DnTIk~~~~~ 180 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSY----DNTIKVYRDE 180 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEecc----CCeEEEEeec
Confidence 56667999999999999998887776543 9999999754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-20 Score=188.51 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=133.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...|.++.|+|....++|+++.||+|+|||+.. ...+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 45678999999986557999999999999999986 466778899999999999997443
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.+|+||+.||+|++||+++ +... ..+.. ...|.+++|++....+|++|+.||.|++||++....++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~-~~~~---~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQ-GVSI---GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCC-CcEE---EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 3999999999999999987 3333 34443 46899999966544499999999999999999874467778899999
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|+++.|. ++.+++.+.. |+.|++||.+.
T Consensus 664 V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~ 691 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSST----DNTLKLWDLSM 691 (793)
T ss_pred EEEEEEe-CCCEEEEEEC----CCEEEEEeCCC
Confidence 9999997 5677776655 89999999874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=187.10 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=139.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|+++.|+|.+..+|+||+.||+|++||+.. ...+.++..+ ..+.++
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~-~~v~~v 623 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ---------------------GVSIGTIKTK-ANICCV 623 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---------------------CcEEEEEecC-CCeEEE
Confidence 444566789999999999985548999999999999999986 4556666654 578999
Q ss_pred EeCC-CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-----
Q 018235 236 DWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG----- 309 (359)
Q Consensus 236 ~~sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~----- 309 (359)
.|++ .+. +|++|+.||.|++||++...... ..+.+|...|.+++|. ++. .|++++.|++|+|||++..
T Consensus 624 ~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~---~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 624 QFPSESGR-SLAFGSADHKVYYYDLRNPKLPL---CTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEeCCCCC-EEEEEeCCCeEEEEECCCCCccc---eEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence 9965 455 99999999999999998743222 4577899999999997 455 8999999999999999853
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..++..+.+|...+++++|++++.+++.+.. ++.+.+|+...
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~----D~~v~iw~~~~ 739 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSE----TNEVFVYHKAF 739 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeC----CCEEEEEECCC
Confidence 1467788899999999999999999988876 89999999653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=148.67 Aligned_cols=190 Identities=17% Similarity=0.276 Sum_probs=143.1
Q ss_pred CeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccc------------------------c
Q 018235 155 PILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI------------------------V 209 (359)
Q Consensus 155 ~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------------------------~ 209 (359)
|... .+...|.|.|.|.+|+|.| .++|||+.|.+|++.-+........++... .
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 3444 4556688999999999999 899999999999998776532221111100 0
Q ss_pred cCCCCC-------CCCCCCcEEecCCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC---CCCC
Q 018235 210 GQGAPQ-------VSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---HSAS 278 (359)
Q Consensus 210 ~~~~~~-------~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h~~~ 278 (359)
..+.+. ...+.+...+.||++.|.+| .|+ +. ++++|+.|.+|++||++-.....+.-..+.+ ..+.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 011111 04567888899999999887 785 33 9999999999999999974433221122322 2368
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.+|+..|.|. +|++|-.|.+..+||+|.+ .+++.+..|.++|.|+.|+|.-.+++...- |..|++-|..
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~sy----d~~ikltdlq 303 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSY----DMKIKLTDLQ 303 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecc----cceEEEeecc
Confidence 99999999999 9999999999999999998 899999999999999999998888776644 7778877654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=156.15 Aligned_cols=168 Identities=17% Similarity=0.315 Sum_probs=143.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|+|+|+.++|+-+| +++.|++.|.+|++|+... +..+.++.+|..+|..++-+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 4566899999999999999 8999999999999999876 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-CceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~ 317 (359)
.++. .|++|+.|..|.+||+.+ ++.. +.|.+|.+.|+.|+|+.... ++++||-|.++++||.|+.. +|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~T-Gkv~---Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNT-GKVD---RRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEccc-Ceee---eecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9998 999999999999999988 5555 78999999999999998877 99999999999999999862 3443321
Q ss_pred c--------------------------------------CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 A--------------------------------------HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~--------------------------------------h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. ...+|+|++|++++..++.++- +.++++.|-.+|++
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETGKL 217 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec----cceeeecccchhHH
Confidence 1 2457888888888888887765 88888888777753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=163.30 Aligned_cols=183 Identities=17% Similarity=0.302 Sum_probs=143.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc-cccccccccccC---CCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL-NALAESETIVGQ---GAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.+|...|-+|+..+++ ..+++|+-|..|.||+..... ..+.......+. .........|+.++.||+.+|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 3999999999999999 899999999999999943311 111111110000 00111246789999999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC--ceEE
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTS 315 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~~~ 315 (359)
++. +.++|++.|.+|+.||+.+++. . ..+. -..+.+++..+|... +||+|+.|..||+||.|++.. +.++
T Consensus 269 ~d~--~v~yS~SwDHTIk~WDletg~~-~---~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 269 SDA--TVIYSVSWDHTIKVWDLETGGL-K---STLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cCC--CceEeecccceEEEEEeecccc-e---eeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEe
Confidence 993 3899999999999999988543 2 2233 346889999999887 999999999999999999843 4456
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|...|.++.|+|.+.+.+..... |+.+++||+++-
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~---D~t~klWDvRS~ 378 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSY---DNTVKLWDVRST 378 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEec---CCeEEEEEeccC
Confidence 78999999999999999988877664 999999999874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=168.99 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=148.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...++.+..+.|.+|+|++ +++++|+.||.|.+|++........- +-...-.|.-+...|.|++||
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDL-------------kYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDL-------------KYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhh-------------hhhhhcceeecccceEEEeec
Confidence 3456778889999999999 89999999999999998762110000 112233455678899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
.+.+ +||||+.||.|++|.+++ +.++ +.|. +|+..|++++||.++. .+++++.|.++||.-+.++ +++..+.
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~t-G~Cl---RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSG-K~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIET-GQCL---RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSG-KCLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEec-chHH---HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccc-hhHHHhc
Confidence 9998 999999999999999998 5555 5565 8999999999999998 8899999999999999998 8999999
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|.+-||...|.++|..++.... |+++++|+..+++
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSs----DgtvkvW~~Ktte 381 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASS----DGTVKVWHGKTTE 381 (508)
T ss_pred CccccccceEEcCCCCeEEEecC----CccEEEecCcchh
Confidence 99999999999999999998876 9999999998765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=172.39 Aligned_cols=161 Identities=20% Similarity=0.409 Sum_probs=134.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
|.+.|-+++|.. .++.+|+.+|.|.++|++.. .....++.+|..+|.+|.|++++.
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------------------~~~~~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------------------QHVVSTLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------------------hhhhhhhhcccceeeeeEECCCCC-
Confidence 999999999983 78999999999999999982 222234889999999999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCCceEEeecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
+||||+.|+.++|||... ..+. ..+..|++.|.+++|+|....+||+|+ .|++|++||+.++ ..+..+. ..+
T Consensus 315 ~lASGgnDN~~~Iwd~~~-~~p~---~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgs 388 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-PEPK---FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGS 388 (484)
T ss_pred eeccCCCccceEeccCCC-cccc---EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCC
Confidence 999999999999999955 3333 678899999999999999988999975 7999999999987 6666665 456
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|..|.|++..+-++.+... ..+.|.||+..+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGY--SENQITLWKYPSM 421 (484)
T ss_pred ceeeEEEcCCCCEEEEecCC--CCCcEEEEecccc
Confidence 69999999998777766442 2557999987553
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=175.74 Aligned_cols=206 Identities=17% Similarity=0.252 Sum_probs=172.8
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.+-|.--+++.|.. ..||.|- ++-.|.||.+.
T Consensus 50 HdGpVRgv~FH~~q-----------plFVSGG-----DDykIkVWnYk-------------------------------- 81 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQ-----------PLFVSGG-----DDYKIKVWNYK-------------------------------- 81 (1202)
T ss_pred cCCccceeeecCCC-----------CeEEecC-----CccEEEEEecc--------------------------------
Confidence 45777778887764 3666654 67789999873
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
...+..++.+|-.-|..+.|++.- -+|.|+|+|-+|+||+..+ .+++.+
T Consensus 82 ---------~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqs---------------------r~~iav 130 (1202)
T KOG0292|consen 82 ---------TRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQS---------------------RKCIAV 130 (1202)
T ss_pred ---------cceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccC---------------------CceEEE
Confidence 667778999999999999999988 5889999999999999998 789999
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-------C---------c---------ceecCccccCCCCCe
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-------A---------T---------WNVDPNPFIGHSASV 279 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-------~---------~---------~~~~~~~~~~h~~~V 279 (359)
+.||...|.|..|+|... +++|+|-|.+|++||+..- + + -.+....+.||...|
T Consensus 131 ltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred EecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 999999999999999888 9999999999999998521 1 0 011124567999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCC-CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+.++|+|+-+ +|+||++|+.|++|.+...+ -.+-+..+|...|.++-|+|...+++.... |++|++||...
T Consensus 210 NwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE----DksirVwDm~k 281 (1202)
T KOG0292|consen 210 NWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE----DKSIRVWDMTK 281 (1202)
T ss_pred ceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC----CccEEEEeccc
Confidence 9999999999 99999999999999987641 133445899999999999999999987766 99999999765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-20 Score=156.74 Aligned_cols=223 Identities=16% Similarity=0.296 Sum_probs=168.9
Q ss_pred ccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (359)
Q Consensus 63 ~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 142 (359)
|.+++|..-+.|+|+..|. || .+++-| ..+|.+|++. +++.
T Consensus 93 fd~~YP~tK~~wiPd~~g~----~p---dlLATs------~D~LRlWri~----------------------~ee~---- 133 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGV----YP---DLLATS------SDFLRLWRIG----------------------DEES---- 133 (364)
T ss_pred CCCCCCccceEecCCcccc----Cc---chhhcc------cCeEEEEecc----------------------CcCC----
Confidence 6889999999999997543 66 344333 5599999993 0000
Q ss_pred CCCcccCCCCCCCeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC
Q 018235 143 DSDDDEEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221 (359)
Q Consensus 143 d~~~~~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (359)
.-. ....+. .+...|..++++..|+.-.++++.+.+-|-+..|||+.... ....
T Consensus 134 ----~~~---~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------~~~v 188 (364)
T KOG0290|consen 134 ----RVE---LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------SGTV 188 (364)
T ss_pred ----cee---hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------ccce
Confidence 000 011222 23345778999999999889999999999999999998820 1223
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC--CCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
...+..|..+|+.++|...+...|||++.||.+++||+|...... ..+.. ...+...++|++...+++|+-..|.
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST---IIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST---IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce---EEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 456788999999999999888899999999999999999732211 12222 1457788999999999999977654
Q ss_pred -cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 300 -HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|.|.|+|.+..++..+..|.+.||.|+|.|...-.+.++. .|....+||...
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG---DD~qaliWDl~q 319 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG---DDCQALIWDLQQ 319 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC---CcceEEEEeccc
Confidence 59999999987889999999999999999999876655543 388899999765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-21 Score=166.21 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=138.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+++|...|..++|+. .+++|++.|.++.+||+..+. .......+.||.+.|+.+
T Consensus 268 e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps------------------~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPT------------------DITLRRVLVGHRAAVNVV 326 (499)
T ss_pred chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCch------------------HHHHHHHHhhhhhheeee
Confidence 34467789999999999986 689999999999999998732 123345788999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+. . +++|++.|.+|++|++.+ ...+ +++.+|+..|-|+++ .+. ++++||.|.+|||||+..+ .++..
T Consensus 327 dfd~--k-yIVsASgDRTikvW~~st-~efv---Rtl~gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~G-~cLRv 395 (499)
T KOG0281|consen 327 DFDD--K-YIVSASGDRTIKVWSTST-CEFV---RTLNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIECG-ACLRV 395 (499)
T ss_pred cccc--c-eEEEecCCceEEEEeccc-eeee---hhhhcccccceehhc--cCe-EEEecCCCceEEEEecccc-HHHHH
Confidence 9965 3 999999999999999987 5665 889999999999998 466 9999999999999999998 88888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|..-|.||.|+ .+.++.+.- |+.|++||..++
T Consensus 396 LeGHEeLvRciRFd--~krIVSGaY----DGkikvWdl~aa 430 (499)
T KOG0281|consen 396 LEGHEELVRCIRFD--NKRIVSGAY----DGKIKVWDLQAA 430 (499)
T ss_pred HhchHHhhhheeec--Cceeeeccc----cceEEEEecccc
Confidence 99999999999998 444555433 999999998765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=170.26 Aligned_cols=191 Identities=18% Similarity=0.270 Sum_probs=147.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc----------------cccCCCCCC-
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET----------------IVGQGAPQV- 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~----------------~~~~~~~~~- 216 (359)
...+.+++..|+..|+.+.|+..+ +.+.+.+-||+|+.||+..-.+ ++.... ....+....
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 667888999999999999999999 8999999999999999875211 111110 000011110
Q ss_pred -------CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC
Q 018235 217 -------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 217 -------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (359)
..++.+-++.||.++|.+|+|+|.+. .|+|||-|.+|++||+-.....+ .++ .+.+.|.+++|+|+|.
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~v---Etl-~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTV---ETL-EIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCcee---eeE-eeccceeEEEEcCCCC
Confidence 46777888999999999999999998 99999999999999996632222 333 4778899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCceEEe--------------------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 290 DVFASCSVDGHIAIWDTRVGKSALTSF--------------------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~--------------------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
-+|++..||.|.+||+... ..+.++ .+.....+.|+++++|.+++.+.. .+.|+
T Consensus 534 -elaVaTldgqItf~d~~~~-~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~----sn~iC 607 (893)
T KOG0291|consen 534 -ELAVATLDGQITFFDIKEA-VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE----SNSIC 607 (893)
T ss_pred -eEEEEEecceEEEEEhhhc-eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC----cccEE
Confidence 9999999999999999865 222111 122356899999999999998876 67899
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
|+++..+-
T Consensus 608 iY~v~~~v 615 (893)
T KOG0291|consen 608 IYDVPEGV 615 (893)
T ss_pred EEECchhh
Confidence 99988764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=161.70 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=139.5
Q ss_pred CCe-EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec---CCC
Q 018235 154 TPI-LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GHK 229 (359)
Q Consensus 154 ~~~-~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~ 229 (359)
.|. +...+..|..-|+++||+|+| .+|||.+.||+|.|||-.+ +..+..|. +|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAHK 235 (603)
T ss_pred CCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCcc
Confidence 444 335667799999999999999 8999999999999999877 56666776 899
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC---CCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+.|++|+|+|++. +|+|++.|.+++|||+.+ .++. +++.--. ..--.+-|- .. .|++.+.+|+|.+++.
T Consensus 236 GsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~-~slv---~t~~~~~~v~dqqvG~lWq--kd-~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 236 GSIFALSWSPDST-QFLTVSADKTIKIWDVST-NSLV---STWPMGSTVEDQQVGCLWQ--KD-HLITVSLSGTINYLNP 307 (603)
T ss_pred ccEEEEEECCCCc-eEEEecCCceEEEEEeec-cceE---EEeecCCchhceEEEEEEe--CC-eEEEEEcCcEEEEecc
Confidence 9999999999999 999999999999999987 4443 3332211 122234454 33 7999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
... .++..+.+|+..|+++..++++++|+.+.. |+.|.-|+..+|.
T Consensus 308 ~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy----DG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 308 SDP-SVLKVISGHNKSITALTVSPDGKTIYSGSY----DGHINSWDSGSGT 353 (603)
T ss_pred cCC-ChhheecccccceeEEEEcCCCCEEEeecc----CceEEEEecCCcc
Confidence 988 588889999999999999999999888766 9999999988774
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=153.03 Aligned_cols=178 Identities=16% Similarity=0.258 Sum_probs=146.6
Q ss_pred eEEEEEecCCCceeeEEEeC--CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 156 ILQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++..+.+|.|+|+.+.|.. .| .+||+++.||.|.||.-... .......+..|...++
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVN 106 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVN 106 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhcccce
Confidence 67788999999999999965 56 89999999999999998763 2455677889999999
Q ss_pred EEEeCCCCCC-eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CC----------CEEEEEeCCC
Q 018235 234 AIDWNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EP----------DVFASCSVDG 299 (359)
Q Consensus 234 ~l~~sp~~~~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~----------~~las~s~Dg 299 (359)
+++|.|...| .|++++.||.|.|.+.+..+.+.. .+....|.-.|++++|.|. |. ..|+||+.|.
T Consensus 107 sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred eecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 9999998766 678889999999999988655543 3557789999999999997 31 2599999999
Q ss_pred cEEEEECCCCCC-ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 300 HIAIWDTRVGKS-ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 300 ~I~iwD~r~~~~-~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.|+||+.....- ...++.+|...|..++|.|.-.+......+++.|+.+-||-.+
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 999999988622 2344799999999999999876665666666679999999755
|
|
| >PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-22 Score=142.49 Aligned_cols=64 Identities=42% Similarity=0.718 Sum_probs=47.0
Q ss_pred eeChhHhhhhhcccccCcceeEEEEeccC-CCCcccCCceEEEEEeecCCCCCCceEEEEEeeccC
Q 018235 51 QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNIS 115 (359)
Q Consensus 51 ~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~-~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~ 115 (359)
+++|+||+++|++.++||||||||+||.. +.+| .||++++|++||||++.++|+|+|++++++.
T Consensus 9 ~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 9 KNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred hCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 44559999999999999999999999998 7778 8999999999999999999999999997654
|
1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=153.66 Aligned_cols=165 Identities=21% Similarity=0.335 Sum_probs=137.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+|+-.|..+.|-|....+|.+++-|.++++||..+ .+....|+- .+.||+-+|||...
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F~m-e~~VYshamSp~a~ 156 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDFKM-EGKVYSHAMSPMAM 156 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEeec-CceeehhhcChhhh
Confidence 58889999999998878999999999999999987 344444532 45788999998653
Q ss_pred --CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe----
Q 018235 243 --GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---- 316 (359)
Q Consensus 243 --~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---- 316 (359)
.++|+|..+-.|++.|+.+ +.+. ..+.||.+.|.+|.|+|....+||+|+.||.||+||+|....+...+
T Consensus 157 sHcLiA~gtr~~~VrLCDi~S-Gs~s---H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIAS-GSFS---HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cceEEEEecCCCcEEEEeccC-Ccce---eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 3788898899999999987 5655 78999999999999999999999999999999999999763343333
Q ss_pred ----------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 ----------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ----------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|.+.|+.++|..++.+++.... +..+++|+...|+
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DDRIRVWNMESGR 279 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccC----ccceEEeecccCc
Confidence 367788999999999998776544 7889999988775
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-19 Score=147.29 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=139.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..++..++....+.||++...|++ ..||+++ .-.|++||+++. +..|+.+|.+|+..|.
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~-~qhvRlyD~~S~-------------------np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDK-KDLAAAG-NQHVRLYDLNSN-------------------NPNPVATFEGHTKNVT 87 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCc-chhhhcc-CCeeEEEEccCC-------------------CCCceeEEeccCCceE
Confidence 667755554445899999999999 6676655 478999999983 3468999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++.|.-+|+ .++||+.||+++|||+|.... +....|.++|++|..+|+.. -|++|..+|.|+|||++.. .+.
T Consensus 88 aVgF~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 88 AVGFQCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred EEEEeecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCC-ccc
Confidence 999999999 999999999999999998322 33445889999999999988 8999999999999999986 454
Q ss_pred EEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+ ..-...|.++...|+|..++.... .+...+|+.-.
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~ 198 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLN 198 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccC
Confidence 444 445578999999999999988765 56688898654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=167.03 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=144.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 234 (359)
+.....++ ...|+++.|++.| .+||.|..+|.|.|||... .+.+..+.+ |...|-+
T Consensus 209 v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 209 VTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGS 265 (484)
T ss_pred eEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEE
Confidence 34333333 8999999999999 8999999999999999987 455667777 9999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
|+|+ . ..+.+|+.++.|..+|++...... ..+.+|...|..+.|++++. .||+|+.|+.+.|||.... .+++
T Consensus 266 laW~--~-~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~-~p~~ 337 (484)
T KOG0305|consen 266 LAWN--S-SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP-EPKF 337 (484)
T ss_pred Eecc--C-ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCc-cccE
Confidence 9999 3 389999999999999999854433 35889999999999999999 9999999999999999776 7889
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+..|.+.|..++|+|...-|++.. .+..|.+|++|++.+|.
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTNTGA 379 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcCCCc
Confidence 9999999999999999776554432 24569999999999875
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=166.33 Aligned_cols=165 Identities=19% Similarity=0.285 Sum_probs=143.2
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+......|.++.|..+| .++|.|...|.|+|||+.. ...+..+.+|+.++....|+|+
T Consensus 64 ~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~ 121 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQ 121 (487)
T ss_pred HHhhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEeccc
Confidence 34567889999999999 8999999999999999654 4557789999999999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+...|++|+.|+.+++||+.+. . + ...+.+|+..|.+.+|+|...++++|||.||.||+||+|.....+.++ .|.
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a-~-v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg 196 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTA-Y-V--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHG 196 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCc-E-E--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCC
Confidence 9889999999999999999763 2 2 357899999999999999999999999999999999999974455555 499
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|-++.+=|.|..++... .+.+++||..+|.
T Consensus 197 ~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAG-----GNSVKVWDLTTGG 228 (487)
T ss_pred CceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCc
Confidence 9999999999999888764 5679999988664
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=160.36 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=165.0
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecC
Q 018235 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH 164 (359)
Q Consensus 85 ~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H 164 (359)
.+|...||++|| ....|++|.|+ ...+...+.+|
T Consensus 89 s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~aH 122 (476)
T KOG0646|consen 89 SSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSAH 122 (476)
T ss_pred cCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHhh
Confidence 567778999998 45689999994 66676777899
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC-CC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT-TG 243 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~ 243 (359)
-..|+|++|+-++ .+|+||+.||.|.+|.+.......... ..+|.+.|..|+-+|+.|...+-+ ..
T Consensus 123 YQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 123 YQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred ccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCccc
Confidence 9999999999999 899999999999999987643322221 368999999999999999887652 23
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-------------
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------- 310 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------- 310 (359)
+|+|+|.|.+|++||+.. +..+ ..+ ....++.+++.+|.+. .+..|+.+|.|.+.++....
T Consensus 190 rl~TaS~D~t~k~wdlS~-g~LL---lti-~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSL-GVLL---LTI-TFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred eEEEecCCceEEEEEecc-ceee---EEE-ecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccccccccccc
Confidence 999999999999999976 5544 222 2457899999999998 99999999999998876542
Q ss_pred --CceEEeecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 311 --SALTSFKAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 311 --~~~~~~~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..+..+.+|.. .|+|++.|-+|.+|+.+.. ++.+++||+.+-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~----dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDE----DGKVCVWDIYSK 309 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCC----CCCEEEEecchH
Confidence 12344567877 9999999999999998877 999999998653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-19 Score=146.29 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=124.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...++.+..+|..+|..++.+.++ ..||+|+.|..|.+||+.+ ++.++.|.+|.+.|+
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 667888899999999999999988 7899999999999999998 788999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
++.|+.... .++||+.|.++++||.|+... .+++.+......|.+|..+.. .|++||.||++|.||+|.+.
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeeh
Confidence 999999988 999999999999999987322 234677778889999987533 78999999999999999872
Q ss_pred ----CceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 311 ----SALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 311 ----~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.|+..+......-..++=+-++.+-+.+
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 3444443333333334434444444433
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-19 Score=169.37 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=141.6
Q ss_pred CeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 155 PILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 155 ~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+ ..+.+|.+.|+++.+.. +..++++|+.|.++++||+.+ +.+..++.+|...|.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s---------------------g~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST---------------------GECTHSLQGHTSSVR 295 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------------------CcEEEEecCCCceEE
Confidence 3444 44899999999999987 448999999999999999877 899999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++...+. ++++|+.|.+|++|++.+ +..+ ..+.+|..+|++++.+ +. ++++|+.|++|++||++++ +++
T Consensus 296 ~~~~~~~---~~~sgs~D~tVkVW~v~n-~~~l---~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-~cl 364 (537)
T KOG0274|consen 296 CLTIDPF---LLVSGSRDNTVKVWDVTN-GACL---NLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-KCL 364 (537)
T ss_pred EEEccCc---eEeeccCCceEEEEeccC-cceE---EEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc-eee
Confidence 9988663 889999999999999987 5554 6677899999999997 55 9999999999999999988 899
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.+|...|.++.+... ..++.+.- |+.|++||..+.
T Consensus 365 ~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTK 402 (537)
T ss_pred eeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCch
Confidence 999999999999988876 44544443 899999999876
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=158.50 Aligned_cols=170 Identities=13% Similarity=0.183 Sum_probs=145.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+.+|...|+.+.++|.. ..+++++.|-.|+||.... .........|..+|+.+
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGL 309 (506)
T ss_pred hhhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceee
Confidence 4446778999999999999988 7889999999999999877 23445677899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
..+|.+. +|++++.||++.+.|++++....+ ..-....-.+++++|||+|- +|++|..||.|+|||+..+ ..+..
T Consensus 310 s~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~--vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~-~~~a~ 384 (506)
T KOG0289|consen 310 SLHPTGE-YLLSASNDGTWAFSDISSGSQLTV--VSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ-TNVAK 384 (506)
T ss_pred eeccCCc-EEEEecCCceEEEEEccCCcEEEE--EeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCc-ccccc
Confidence 9999999 999999999999999998544321 11111224589999999999 9999999999999999998 57788
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.+|.++|..|+|+.+|-+++.... |+.|++||.|..
T Consensus 385 Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl 421 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKL 421 (506)
T ss_pred CCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhh
Confidence 9999999999999999999999987 888999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-20 Score=158.42 Aligned_cols=220 Identities=20% Similarity=0.315 Sum_probs=166.9
Q ss_pred CceeeeChhHhhhhhcccccC--------cceeEEEEeccCCCCc-------------------------ccCCceEEEE
Q 018235 47 GEELQCDPTAYNSLHAFHIGW--------PCLSFDIVRDTLGLVR-------------------------NEFPHTAYFV 93 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~w--------P~ls~~~~pd~~~~~~-------------------------~~~~~~~~~~ 93 (359)
+|.-++.|+-.-.|...+|.| |-.++|.++....... ...|..+||+
T Consensus 150 ~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLv 229 (508)
T KOG0275|consen 150 GEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLV 229 (508)
T ss_pred CceEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEe
Confidence 555566666666666666666 5667777664321100 1123457888
Q ss_pred EeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEE
Q 018235 94 AGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRA 173 (359)
Q Consensus 94 ~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~ 173 (359)
.|+ .+++|.||.+.+ -+.+.+. +=.-.-.+.-|..+|.|+.|
T Consensus 230 sgS-----vDGFiEVWny~~-GKlrKDL--------------------------------kYQAqd~fMMmd~aVlci~F 271 (508)
T KOG0275|consen 230 SGS-----VDGFIEVWNYTT-GKLRKDL--------------------------------KYQAQDNFMMMDDAVLCISF 271 (508)
T ss_pred ecc-----ccceeeeehhcc-chhhhhh--------------------------------hhhhhcceeecccceEEEee
Confidence 887 577999998742 1111100 00011233457899999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCCeEEEEcCCC
Q 018235 174 MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNS 252 (359)
Q Consensus 174 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg 252 (359)
+.+. .++|+|+.||.|++|.+.+ +.++..|. .|+..|+++.||.++. .++|++.|.
T Consensus 272 SRDs-EMlAsGsqDGkIKvWri~t---------------------G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~ 328 (508)
T KOG0275|consen 272 SRDS-EMLASGSQDGKIKVWRIET---------------------GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQ 328 (508)
T ss_pred cccH-HHhhccCcCCcEEEEEEec---------------------chHHHHhhhhhccCeeEEEEccCcc-hhhcccccc
Confidence 9988 8999999999999999998 67787786 8999999999999998 999999999
Q ss_pred cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCCCCEEEEEEcC
Q 018235 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADVNVISWNR 330 (359)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~ 330 (359)
++++.-+.+ ++.+ ..|.||++.|+...|.++|. .+++||.||+|++|+..+. .++.+++ +...+|+++..-|
T Consensus 329 tvRiHGlKS-GK~L---KEfrGHsSyvn~a~ft~dG~-~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 329 TVRIHGLKS-GKCL---KEFRGHSSYVNEATFTDDGH-HIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred eEEEecccc-chhH---HHhcCccccccceEEcCCCC-eEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcC
Confidence 999999987 6665 78999999999999999998 9999999999999999997 7887774 3455788887777
Q ss_pred CCC
Q 018235 331 CWL 333 (359)
Q Consensus 331 ~~~ 333 (359)
.+.
T Consensus 403 Knp 405 (508)
T KOG0275|consen 403 KNP 405 (508)
T ss_pred CCC
Confidence 654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=157.98 Aligned_cols=230 Identities=18% Similarity=0.242 Sum_probs=160.6
Q ss_pred HhhhhhcccccCcceeEEEEeccCCCCc-ccCCc-eEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCC
Q 018235 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVR-NEFPH-TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (359)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~pd~~~~~~-~~~~~-~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~ 133 (359)
+|.-.......-||-+.|++-+.....- ..|.+ ..||+.++ ++-...||++.+.
T Consensus 201 ll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d------------------- 256 (519)
T KOG0293|consen 201 LLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASAS-----KDSTAIIWIVVYD------------------- 256 (519)
T ss_pred hhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeecc-----CCceEEEEEEecC-------------------
Confidence 4444455667788888888877532211 12222 35666555 4557778888410
Q ss_pred CCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCC
Q 018235 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (359)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (359)
..-.+.+++++|..+|.-|+|+|+. +++++|+.+..+.+||..+
T Consensus 257 -------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t---------------- 300 (519)
T KOG0293|consen 257 -------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT---------------- 300 (519)
T ss_pred -------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc----------------
Confidence 1335668999999999999999999 6777778888899999988
Q ss_pred CCCCCCCCcEEec-CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC---------------------Cccee----
Q 018235 214 PQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD---------------------ATWNV---- 267 (359)
Q Consensus 214 ~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~---------------------~~~~~---- 267 (359)
+.....+. +|...+.+.+|.|++. .+++|+.|++|..||+... ++++.
T Consensus 301 -----gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 301 -----GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred -----chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 33333332 3456788899999998 8999999999999987531 00000
Q ss_pred ------------------------------------------------------cCccccCCCCC--eEEEEecCCCCCE
Q 018235 268 ------------------------------------------------------DPNPFIGHSAS--VEDLQWSPTEPDV 291 (359)
Q Consensus 268 ------------------------------------------------------~~~~~~~h~~~--V~~v~~sp~~~~~ 291 (359)
..+.+.||+.. +-.-||--....+
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 01223355433 2223444444459
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+||||.|+.|+||+.+++ +++..+.+|...|||++|||..+..+++. +.|++|+||.+..
T Consensus 455 iaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASa---sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASA---SDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhcc---CCCCeEEEecCCc
Confidence 999999999999999998 89999999999999999999887554433 2499999998764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=178.17 Aligned_cols=169 Identities=19% Similarity=0.334 Sum_probs=152.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+|..+..+.+|.++|.+++|++.. .+|++|+.+|+|++||+.. .+.++++.||...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 555555688999999999999988 8999999999999999997 677889999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
.++|+|.+. ++++|+.|+.+++||++..+. . ..+.+|...|..+.|+|+|. ++++++.|.+++|||++.+ +.+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~---~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag-k~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-S---HTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG-KLS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc-e---eeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc-ccc
Confidence 999999998 999999999999999996343 3 67888999999999999999 9999999999999999998 778
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..|..|.+.|.++.|+|..-++..+.. +.++++||..+
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dlet 227 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLET 227 (825)
T ss_pred cccccccccccccccCchhhhhccCCC----Cceeeeeccce
Confidence 889999999999999998877776665 99999999874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=153.79 Aligned_cols=186 Identities=11% Similarity=0.174 Sum_probs=144.7
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|++++.+.+|+|+| .++|||+.|..|+|+|+...+....... ...... ....-.+++|-.|..+|+.|+|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~e-m~~~~~--qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKE-MISGDT--QARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhh-hccCCc--ccCCceEeehhhccCcccceeec
Confidence 4456799999999999999 8999999999999999985432221111 111100 00123467899999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
|... +|+||+.|++|++||+..... ... ........+|.+++|+|.|. +++.|..--++|+||+.+. ++...-
T Consensus 182 Pre~-ILiS~srD~tvKlFDfsK~sa-KrA-~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~-QcfvsanP 256 (430)
T KOG0640|consen 182 PRET-ILISGSRDNTVKLFDFSKTSA-KRA-FKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTY-QCFVSANP 256 (430)
T ss_pred chhh-eEEeccCCCeEEEEecccHHH-HHH-HHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccce-eEeeecCc
Confidence 9998 999999999999999965321 111 12223567899999999999 8999999999999999997 554443
Q ss_pred -ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 -KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 -~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|.+.|+++.+++.+++.+.+.. |+.|++||+-++.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~r 294 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASK----DGAIKLWDGVSNR 294 (430)
T ss_pred ccccccceeEEEecCCccEEEEecc----CCcEEeeccccHH
Confidence 579999999999999999888765 9999999986654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=146.03 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=163.7
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+|-|+-|--++ .+|+.|.. +..+.|+.+..+
T Consensus 21 ~~v~Sv~wn~~g-----------~~lasgs~-----dktv~v~n~e~~-------------------------------- 52 (313)
T KOG1407|consen 21 QKVHSVAWNCDG-----------TKLASGSF-----DKTVSVWNLERD-------------------------------- 52 (313)
T ss_pred hcceEEEEcccC-----------ceeeeccc-----CCceEEEEecch--------------------------------
Confidence 357788888775 57777774 447888888432
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.-.......+|.+.|-.+.|.|..+.++|+++.|.+|++||++. .++.....
T Consensus 53 -------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~ 104 (313)
T KOG1407|consen 53 -------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIE 104 (313)
T ss_pred -------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEee
Confidence 11112344589999999999999999999999999999999997 56666554
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC------------------------------c-------ceecC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA------------------------------T-------WNVDP 269 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~------------------------------~-------~~~~~ 269 (359)
... +-.-+.|+|++. +++.|+.|..|.+.|.++.. . .+.+.
T Consensus 105 ~~~-eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv 182 (313)
T KOG1407|consen 105 TKG-ENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV 182 (313)
T ss_pred ccC-cceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc
Confidence 433 344678888887 88888888888887776421 0 01133
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
..+.+|.+...||.|+|.|+ .||+|+.|..+.|||+... -+++.+..+.-+|..|+|+.+|++|+.+.. |..|-
T Consensus 183 ~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSE----Dh~ID 256 (313)
T KOG1407|consen 183 QSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASE----DHFID 256 (313)
T ss_pred cccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCc----cceEE
Confidence 66778999999999999999 9999999999999999987 788889999999999999999999998866 88898
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
|-++.+|.
T Consensus 257 IA~vetGd 264 (313)
T KOG1407|consen 257 IAEVETGD 264 (313)
T ss_pred eEecccCC
Confidence 88887775
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=155.93 Aligned_cols=227 Identities=15% Similarity=0.219 Sum_probs=169.8
Q ss_pred hHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCC
Q 018235 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (359)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~ 134 (359)
..|+-+--....|-|.-|..-| .++.+-..++++. ...|+- |+++.+-+
T Consensus 23 ~CYddIrVs~~tWDS~fcavNP-------------kfiAvi~easgGg--af~ViP---l~k~Gr~d------------- 71 (472)
T KOG0303|consen 23 QCYDDIRVSRVTWDSSFCAVNP-------------KFVAVIIEASGGG--AFLVIP---LVKTGRMD------------- 71 (472)
T ss_pred hhhcceeeeeeeccccccccCC-------------ceEEEEEecCCCc--ceeecc---cccccccC-------------
Confidence 6788888888888887666544 3666666666432 333332 22322211
Q ss_pred CCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCC
Q 018235 135 SESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP 214 (359)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 214 (359)
. .-| ...+|+++|..+.|+|.+.+.|||||+|.+|.||.+........
T Consensus 72 ~-----------------~~P----~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------- 119 (472)
T KOG0303|consen 72 A-----------------SYP----LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------- 119 (472)
T ss_pred C-----------------CCC----CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----------
Confidence 0 022 23499999999999999999999999999999999977332211
Q ss_pred CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
...|+..+.||+..|.-+.|+|...+.|+|+++|.+|.+|++.++...+ .+. |...|++++|+.+|. +|++
T Consensus 120 ---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~T 190 (472)
T KOG0303|consen 120 ---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCT 190 (472)
T ss_pred ---cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeee
Confidence 2578999999999999999999999999999999999999998854433 344 999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCC-EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNAD-VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~-V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|+.|||||.|++ ..+..-.+|.+. -..+.|-.++.++.++. +...+..+.+|+...
T Consensus 191 tckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGf-sr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 191 TCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGF-SRMSERQIALWDPNN 250 (472)
T ss_pred ecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeecc-ccccccceeccCccc
Confidence 999999999999998 666666677652 34456777788554444 344577788888654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=149.89 Aligned_cols=220 Identities=18% Similarity=0.293 Sum_probs=147.7
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCcee
Q 018235 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (359)
Q Consensus 90 ~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (359)
..|++||+..+.+ |+|.++++.. + ...++...+..|.|+|+
T Consensus 27 icFlvgTnslK~d-NqVhll~~d~-------------------------------e-------~s~l~skvf~h~agEvw 67 (370)
T KOG1007|consen 27 ICFLVGTNSLKED-NQVHLLRLDS-------------------------------E-------GSELLSKVFFHHAGEVW 67 (370)
T ss_pred eEEEEeccccCCc-ceeEEEEecC-------------------------------c-------cchhhhhhhhcCCccee
Confidence 7899999999754 9999999830 0 02223344556677777
Q ss_pred eEEEeCCCCcEEEEEeCC-------CcEEEEECCCCccc-----cccccccc-------------c-------CCCCCC-
Q 018235 170 RIRAMTQNPHICASWADT-------GHVQVWDLRSHLNA-----LAESETIV-------------G-------QGAPQV- 216 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~-----~~~~~~~~-------------~-------~~~~~~- 216 (359)
.|+.+|..+.+++|+..+ -.+.||.+...... +....... + ...+++
T Consensus 68 ~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~ 147 (370)
T KOG1007|consen 68 DLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIV 147 (370)
T ss_pred hhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceE
Confidence 777777777777776542 23457777654322 00000000 0 000000
Q ss_pred -----CCCCCcEE-----ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC
Q 018235 217 -----SNQSPLVK-----FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (359)
Q Consensus 217 -----~~~~~~~~-----~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (359)
...+.+.. -..|....++-.|||...+.-+....|+++..||+|+..+.. ..-.+|...|.++.|+|
T Consensus 148 l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNP 224 (370)
T ss_pred EEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhc---chhhhhcceeeeccCCC
Confidence 00110111 123556778889999655544444559999999999854433 44567999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+-+++|+||+.||.|||||+|..+.++.++..|...|+++.|||.-..|+....+ |..+.+|-..
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---Ds~V~Lsca~ 289 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---DSAVNLSCAS 289 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---CceeEEEecc
Confidence 9999999999999999999999878999999999999999999976655554443 7777777543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-18 Score=148.83 Aligned_cols=169 Identities=16% Similarity=0.269 Sum_probs=138.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....+.+|+..|.++.|+.++ .++|||.-+|.|+||...+ ......+..-...+.-|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 457788999999999999999 8999999999999999988 444555555567889999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|.+. .|+.|+.||.+.+|.+.+. ... +.+.||..++++-.|.|+|+ .++++..||+|++|+..++ ++++.+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~-~~~---kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQ-ALC---KVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCc-cee---eEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCC-ceeEEe
Confidence 999988 9999999999999999874 322 67999999999999999999 9999999999999999998 888877
Q ss_pred e-cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 K-AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 ~-~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. +......++.++..+..++.+.+ +..+.+-...+|+|
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSGKV 267 (399)
T ss_pred cccccCcCCccccccccceeEeccC----CccEEEEccccceE
Confidence 4 33445677888887777665544 55555555555443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.1e-19 Score=147.64 Aligned_cols=208 Identities=17% Similarity=0.263 Sum_probs=161.4
Q ss_pred hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCC
Q 018235 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (359)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~ 137 (359)
+-||++....-.-+|.+-.|. .+||.|.| +.-|.|+.+. +.+
T Consensus 92 delhsf~hkhivk~~af~~ds-----------~~lltgg~-----ekllrvfdln---~p~------------------- 133 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAFSQDS-----------NYLLTGGQ-----EKLLRVFDLN---RPK------------------- 133 (334)
T ss_pred hhhhhhhhhheeeeEEecccc-----------hhhhccch-----HHHhhhhhcc---CCC-------------------
Confidence 778999888888999998884 68998885 2345566542 221
Q ss_pred CCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCC
Q 018235 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (359)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (359)
.|.. .+.+|++.|..+.|+... +.|.+.++|++|++||.++
T Consensus 134 ----------------App~--E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT-------------------- 174 (334)
T KOG0278|consen 134 ----------------APPK--EISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT-------------------- 174 (334)
T ss_pred ----------------CCch--hhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc--------------------
Confidence 2222 334899999999999887 5666779999999999998
Q ss_pred CCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
+..+.++.. ..++.++..++++. +++-...+.|.+||..+.+.. ..+ .-...|++.+.+|+.. +|++|+.
T Consensus 175 -gt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~l----Ks~-k~P~nV~SASL~P~k~-~fVaGge 244 (334)
T KOG0278|consen 175 -GTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLL----KSY-KMPCNVESASLHPKKE-FFVAGGE 244 (334)
T ss_pred -CcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEeccccccce----eec-cCccccccccccCCCc-eEEecCc
Confidence 555666643 44789999999986 555556789999999874332 222 2346789999999986 9999999
Q ss_pred CCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 298 DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|..++.||..++ ..+-.+ ++|-++|.|+.|+|+|...+.+.. |++|++|....+.
T Consensus 245 d~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE----DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 245 DFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSE----DGTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCC----CceEEEEEecCCC
Confidence 999999999998 555554 899999999999999998877765 9999999976553
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=160.45 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=137.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+..++.+|..+|..++|++++ .-|.|++.|+.|++||..+ ++.+..|.. ....+
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~ 303 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPT 303 (503)
T ss_pred CcceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCce
Confidence 445668889999999999999999 7888999999999999998 666666643 23678
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCC--------------------------------------------------
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDA-------------------------------------------------- 263 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~-------------------------------------------------- 263 (359)
++.|+|++...|++|..|+.|+.||+|++.
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~ 383 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP 383 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch
Confidence 999999997799999999999999999751
Q ss_pred --------------cce--------------------ecCccccCCC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 264 --------------TWN--------------------VDPNPFIGHS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 264 --------------~~~--------------------~~~~~~~~h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.+. .....|.||. +.-..|.|||+|. +|++|+.||.+.+||.+
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech
Confidence 000 0012233554 2345678999999 99999999999999999
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+. +.+..+++|..++..+.|+|...-.+.++. -++.|++|+
T Consensus 463 t~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCG---WDGLIKIWD 503 (503)
T ss_pred hh-hhhhccccCCcceEEEEecCCCcceeEecc---cCceeEecC
Confidence 97 778888999999999999998876555544 389999996
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=144.99 Aligned_cols=173 Identities=22% Similarity=0.364 Sum_probs=138.4
Q ss_pred EEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.....|.+.||+|+|.|.+ ..+||+++.||.|.|.+++... ......+...|.-.+++++|
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------------------~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------------------GWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------------------Cccchhhhhccccccceeee
Confidence 3445899999999999987 4689999999999999998721 02233456789999999999
Q ss_pred CCC---CC----------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC---CCEEEEEeCCCcE
Q 018235 238 NPI---TT----------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCSVDGHI 301 (359)
Q Consensus 238 sp~---~~----------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s~Dg~I 301 (359)
.|. +. .+|+||++|..|+||+... ++|... +.|.+|+.-|.+++|+|.- .+.||+||.||+|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~-~~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS-DSWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCC-cchhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 987 30 1699999999999999987 577643 4589999999999999974 4589999999999
Q ss_pred EEEECCCCCC--ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKS--ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~--~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.||-.+.... ....+......++.++|+..|.+|+.+.. ++.+.+|..+.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G----dNkvtlwke~~ 287 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG----DNKVTLWKENV 287 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC----CcEEEEEEeCC
Confidence 9998874311 12223445678999999999999999877 88999997554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=147.43 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=145.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+.+|..+++-|+++.+| .+|.|++.|.++.+|-... +..+-++.||++.|++++.+.+
T Consensus 6 l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecCC
Confidence 56899999999999999 8999999999999998655 6788999999999999999988
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCccee-------------------------------------------------cCcc
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNV-------------------------------------------------DPNP 271 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------------------------------------~~~~ 271 (359)
.. +|+||+.|.+++|||+.++..... +...
T Consensus 64 s~-~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SK-HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cc-eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 88 999999999999999987521000 0112
Q ss_pred ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 272 ~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
+..+.+.++.+-|.|.+. .|++|..||.|.+||++++...+.+...|+..|+.|+++++..+++.++. |..-++|
T Consensus 143 I~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAKLV 217 (327)
T ss_pred ecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccceee
Confidence 224567788899999999 99999999999999999985555566889999999999999999999887 9999999
Q ss_pred eCcCCcc
Q 018235 352 DCSRGEI 358 (359)
Q Consensus 352 d~~~g~v 358 (359)
|..+-++
T Consensus 218 D~~tl~v 224 (327)
T KOG0643|consen 218 DVRTLEV 224 (327)
T ss_pred eccceee
Confidence 9887654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=149.05 Aligned_cols=166 Identities=16% Similarity=0.279 Sum_probs=146.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|.+..|...+ ..++|++-|.+..+||+.+ +.++..+.||..+.+-++-+
T Consensus 266 ~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt---------------------ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET---------------------GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred eeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc---------------------CceeccccCcchhccccccC
Confidence 4667899999999999888 7889999999999999998 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|... ++++.+.|.+.++||++.. -.. ...|+||+..|+++.|..+.. +++||.|.+|+|||+|+...++.++.
T Consensus 324 ptQr-LVvTsSrDtTFRLWDFRea-I~s--V~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR- 396 (481)
T KOG0300|consen 324 PTQR-LVVTSSRDTTFRLWDFREA-IQS--VAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR- 396 (481)
T ss_pred Ccce-EEEEeccCceeEeccchhh-cce--eeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee-
Confidence 9998 9999999999999999863 222 367999999999999998775 89999999999999999877887775
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+++|.++.+..+++++.-.. +..+++||.+...
T Consensus 397 tdS~~NRvavs~g~~iIAiPhD----NRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHD----NRQVRLFDLNGNR 431 (481)
T ss_pred cCCccceeEeecCCceEEeccC----CceEEEEecCCCc
Confidence 5678999999998889888776 7789999987644
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=151.76 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=151.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc-----cccccccc---------ccC-----CCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-----ALAESETI---------VGQ-----GAP 214 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-----~~~~~~~~---------~~~-----~~~ 214 (359)
...+..+..+|.|.||+|+|++++ .+++|++.|++.+||...-+.. ........ ... ..+
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred cccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 556667888999999999999999 8999999999999998432110 00000000 000 001
Q ss_pred CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
...-..|+..|.+|...|.+.+|-.-+. .+++++-|.+..+||+.+ +..+ .++.||....+-++-+|+.. ++++
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEt-ge~v---~~LtGHd~ELtHcstHptQr-LVvT 331 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVET-GEVV---NILTGHDSELTHCSTHPTQR-LVVT 331 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeecc-Ccee---ccccCcchhccccccCCcce-EEEE
Confidence 1122457889999999999999999888 999999999999999988 5655 78999999999999999998 9999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|.|-+.|+||+|..-..+..|.+|...|+++.|+.+.+.+ .+.. |.++++||.+..
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV-SgSD----DrTvKvWdLrNM 388 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV-SGSD----DRTVKVWDLRNM 388 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCCcee-ecCC----CceEEEeeeccc
Confidence 99999999999997645566789999999999999887754 3333 889999998764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=162.79 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=147.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
..++..|...||.+..+..+ ..++++|.|-+|++|+..... ..+..++..|.+.|.||+.
T Consensus 66 ~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~ 125 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAY 125 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeee
Confidence 36677899999999999988 789999999999999998731 2566788899999999999
Q ss_pred -CCCCCCeEEEEcCCCcEEEEecCCCCc-c-----eecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 238 -NPITTGRLVTGDCNSCIYLWEPASDAT-W-----NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 238 -sp~~~~~l~sgs~dg~I~lwd~~~~~~-~-----~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
.++.. ++|||+-|+.|.|||++++.. . .+....+. |+..+|++++.++++. +|++|+..+.|++||.|+.
T Consensus 126 ~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 126 IAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred cccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEeccccc
Confidence 67776 999999999999999986421 0 01123333 8999999999999997 9999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+..+.+|...|.++-.+++|..++.+.. |++|++|+..-..
T Consensus 204 -~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 204 -KKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred -cceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 667778899999999999999999998877 9999999987543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=162.03 Aligned_cols=166 Identities=22% Similarity=0.367 Sum_probs=140.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.+.....+.+|.+.|+++... + .++++|+.||+|.+||+.. .+++.++.+|...|+
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~---------------------~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRT---------------------GKCLKSLSGHTGRVY 375 (537)
T ss_pred CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhh---------------------ceeeeeecCCcceEE
Confidence 455556666799999999998 3 6899999999999999997 789999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++.+... . ++++|+.|++|++||+++..+++ ..+.+|.+.|.++.+. +. +|.+++.|++|++||...+ .++
T Consensus 376 sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~---~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~-~~~ 446 (537)
T KOG0274|consen 376 SLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCI---HTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEG-ECL 446 (537)
T ss_pred EEEecCc-c-eEEeeeeccceEeecCCchhhhh---hhhcCCcccccccccc--cc-eeEeccccccEEEeecccC-cee
Confidence 9988765 4 99999999999999998842444 7899999999877653 44 8999999999999999998 888
Q ss_pred EEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+.+ |...|..+++. ...++.... ++.+++||.+++..
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~----~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSD----DGSVKLWDLRSGTL 486 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEec----CCeeEEEecccCch
Confidence 88877 67889888877 455555555 88999999998763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=170.42 Aligned_cols=178 Identities=20% Similarity=0.374 Sum_probs=147.3
Q ss_pred EEecCC-CceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 160 RKVAHQ-GCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 160 ~~~~H~-~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....|. ..|..|..+|++ ..+|||+ .||.+.||+...-......... .-.+.+.+...|.+.|.|+.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---------~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---------NLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhc---------ccchhheeeccccCceeEEE
Confidence 334554 568999999999 8999999 8999999998763321111110 01466788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCC-CC--------------cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPAS-DA--------------TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~-~~--------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
|+|+|. +||+|+.|+.|.||.... +. +|. ....+.+|...|.+++|+|++. +||++|.|++|
T Consensus 77 ~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsV 153 (942)
T KOG0973|consen 77 FSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSV 153 (942)
T ss_pred ECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCcc-EEEEecccceE
Confidence 999999 999999999999998762 10 122 1356789999999999999998 99999999999
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.||+.++. ..+..+.+|.+.|-.++|.|-|++++.... |++|++|+...
T Consensus 154 iiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~d 202 (942)
T KOG0973|consen 154 IIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSD 202 (942)
T ss_pred EEEccccc-eeeeeeecccccccceEECCccCeeeeecC----CceEEEEEccc
Confidence 99999999 888899999999999999999999998876 99999999654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=143.96 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=132.7
Q ss_pred eEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
+....+..|.|.||++.|.+.- ...+.+|++||.|.+|+... ...+.++++|...|+.
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------W~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------WELLKSLKAHKGQVTD 132 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------eEEeeeecccccccce
Confidence 3335667899999999998755 23688899999999999987 7888999999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcc-eecCcc------cc----------------------------CCCCCe
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNP------FI----------------------------GHSASV 279 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~------~~----------------------------~h~~~V 279 (359)
|+.+|.+. +-+|.+.|+.+++|++-.+..- +..+.. +. .....+
T Consensus 133 lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~ 211 (362)
T KOG0294|consen 133 LSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRI 211 (362)
T ss_pred eEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccc
Confidence 99999998 8888899999999999764210 000000 00 001123
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE--cCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~--s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.|- ....+++|..|+.|++||.... .++..+.+|...|..|.+ +|.+.+|+.... |+.|++||....
T Consensus 212 l~~~~l--~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 212 LCATFL--DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASS----DGFIKVWDIDME 283 (362)
T ss_pred eeeeec--CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEecc----CceEEEEEcccc
Confidence 344442 3347899999999999999986 788999999999999874 567778877766 999999998765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-19 Score=175.33 Aligned_cols=174 Identities=20% Similarity=0.310 Sum_probs=140.3
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEE
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAID 236 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~ 236 (359)
+.+...|+|.|..+.|++..++++|+|+.+|.|.|||+.... .|..- -.....+|.+|+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------------TPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------------CCCCCCCCCCcccceEec
Confidence 366678999999999999998899999999999999999832 22110 122356899999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC--CCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH--SASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKS 311 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~ 311 (359)
|+......|+|++.+|++.|||+|. .+.++ .+..| ...+..|+|||++.+.+++++.|. .|.+||+|....
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~-~~pii---~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRK-KKPII---KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccC-CCccc---ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 9998877999999999999999998 44442 23323 245789999999998888888654 499999998877
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++..+..|...|.+++|++.+..++.++. .|+.+.+|+..+|+|
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEV 288 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceE
Confidence 88888999999999999998855554443 289999999999886
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-19 Score=159.89 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=133.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-----cCCCCceE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKDEGY 233 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~ 233 (359)
....+|...++|.+|+|.....|.|++.||+++||++..... .+.+| .+..-.+.
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------------q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------------QLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--------------------heeEEeeccCCCcccCce
Confidence 455689999999999999989999999999999999987432 12222 12334788
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
..+|++++. +||+|..||.|.+|+.+.. ........-.+|.. .|++|.||++|. +|+|-+.|+++++||+|..++
T Consensus 322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred eeecCCCcc-hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccccc
Confidence 999999999 8999999999999998542 11111123356776 999999999999 999999999999999999977
Q ss_pred ceEEeecC--CCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 312 ALTSFKAH--NADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 312 ~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
++....+. .-+-+.++|+|+.++|+.+... ....+.|.+++..+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 77765433 2234567899999999887543 23345677777654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-18 Score=152.26 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=139.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+.+.+|.++|+++.|+|.+...|.+.|.||+|++-|+.... ...+..+..-....++++++
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-------------------~e~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-------------------SEEVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-------------------hHHHhhcCccceeeeecccc
Confidence 45669999999999999998889999999999999998721 23334443344467788999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--C-ceEE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S-ALTS 315 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~-~~~~ 315 (359)
.... .++.|+.=|...+||.|+.+.-. ..+.-|...|..|+++|..+.+|||||.|++.+|||+|... . ++..
T Consensus 289 ~e~~-~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 289 AESR-SVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred CCCc-cEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 8887 77778878899999999966533 45667889999999999999999999999999999999762 2 3455
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...|.-.|++..|+|.+-.|++.+. |..|+|||.+
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSS 399 (498)
T ss_pred cccccceeeeeEEcCCCCceEeecc----CCceEEeecc
Confidence 5779999999999999988888876 8999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=141.94 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=130.0
Q ss_pred CCeEE--EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc
Q 018235 154 TPILQ--LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (359)
Q Consensus 154 ~~~~~--~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (359)
+|.+. ..+..|.+.|++++++- .++|||+.|-+|+|||+.. ...+..+..|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 44433 56678999999999964 6999999999999999998 5667788899999
Q ss_pred eEEEEeCCCC-CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 232 v~~l~~sp~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
|++|.|.+.. ...|++|+.||.|.+|+... |. ....+.+|+..|++|+.||.+. +-++.+.|+.+|+|++-.+
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~G- 159 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRG- 159 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---eE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcC-
Confidence 9999998654 23799999999999999854 43 2478999999999999999999 9999999999999999887
Q ss_pred CceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 SALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 ~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+....+ -.+.. ..|.|+|.|..++...+ +.|-+|....
T Consensus 160 r~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~-----~~i~i~q~d~ 198 (362)
T KOG0294|consen 160 RVAFVLNLKNKA--TLVSWSPQGDHFVVSGR-----NKIDIYQLDN 198 (362)
T ss_pred ccceeeccCCcc--eeeEEcCCCCEEEEEec-----cEEEEEeccc
Confidence 322222 22333 33899999997666654 3366665543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-17 Score=136.86 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.....++-+.|+..+ ++++.-...|+|.|..+.. .+|+.+++.|.....||.|+|+|+
T Consensus 145 ~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps---------------------Lkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS---------------------LKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred cccceeeeeeecCCC-CEEEEecCCceEEEEeccc---------------------cccccccccCCcceEEEEECCCCc
Confidence 456678889998666 5655557789999999886 799999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
+||+|+.|-.+.|||+.. - +..+.+..+.-+|..|+||.+|+ +||++|.|..|-|-++.++ ..+..++ +.++
T Consensus 203 -yfA~GsADAlvSLWD~~E-L---iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetG-d~~~eI~-~~~~ 274 (313)
T KOG1407|consen 203 -YFATGSADALVSLWDVDE-L---ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETG-DRVWEIP-CEGP 274 (313)
T ss_pred -eEeeccccceeeccChhH-h---hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccC-CeEEEee-ccCC
Confidence 999999999999999976 2 23477888999999999999999 9999999999999999998 6777775 7889
Q ss_pred EEEEEEcCCCCeEEEEeeec-----ccceEEEEEeCc
Q 018235 323 VNVISWNRCWLAVCWHLEVM-----MEHFLFMILDCS 354 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~-----~~d~~i~iwd~~ 354 (359)
.+.++|+|...+|++.+.-. ++.+.++++-..
T Consensus 275 t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 275 TFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999886531 223678877543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=149.87 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=160.9
Q ss_pred eecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEe
Q 018235 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM 174 (359)
Q Consensus 95 GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~ 174 (359)
.|.++++-++.|+||.++ ...+...+.+|.|.|+.|++.
T Consensus 80 s~~aSGs~DG~VkiWnls-----------------------------------------qR~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS-----------------------------------------QRECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred hhhhccccCceEEEEehh-----------------------------------------hhhhhheeecccCceeeEEec
Confidence 455566689999999995 334556788999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCcccc-cccccc-----------ccCCCCCC-----CCCCCcEEecCCCCceEEEEe
Q 018235 175 TQNPHICASWADTGHVQVWDLRSHLNAL-AESETI-----------VGQGAPQV-----SNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~-~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~ 237 (359)
. .-++|+++|.+|+.|-+....... ...... .......+ ....|+..+..-.+.+.++.|
T Consensus 119 ~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 119 Q---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred c---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 7 468889999999999876531110 000000 00000000 345688888887889999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|....+|++|..|+.|.|||+++ ++++ +... -+..-+.|+|+| +...|.+++.|..+..+|+|....++....
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~-~~Pl---~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQ-ASPL---KKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCCcchheeeeccCCceEEEeccc-CCcc---ceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhc
Confidence 999998999999999999999998 4444 1111 234557799999 666999999999999999999877888889
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.+.|..+.|||.|+-++.+.- |.+|+|+..+.+.-
T Consensus 270 dhvsAV~dVdfsptG~Efvsgsy----DksIRIf~~~~~~S 306 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSY----DKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeEEEeccCCCcchhccccc----cceEEEeecCCCcc
Confidence 99999999999999998887765 99999999887653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=156.98 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=141.7
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l 235 (359)
+..++..|...|.|+++-.....++|||+-|+.|.|||+......+- ..+ ...+...+. |+...+|+|
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~-----~s~------n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV-----ASF------NNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh-----hhc------cccccccCCCCCccceeee
Confidence 33455679999999999444448999999999999999997422110 000 123333444 899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.++.+. .|++|+..+.|++||.++..+ + ..+.||+..|.++-.+++|. .++|+|.||+|++||++.. +++.+
T Consensus 178 A~N~t~t-~ivsGgtek~lr~wDprt~~k-i---mkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQ-rCl~T 250 (735)
T KOG0308|consen 178 AMNQTGT-IIVSGGTEKDLRLWDPRTCKK-I---MKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQ-RCLAT 250 (735)
T ss_pred ecCCcce-EEEecCcccceEEeccccccc-e---eeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecccc-ceeee
Confidence 9999997 999999999999999998444 3 46789999999999999999 9999999999999999987 89999
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..|...|+++.-+|.=..+..+.+ ++.|..=+.+.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~r----d~~i~~Tdl~n 286 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGR----DGNIYRTDLRN 286 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCC----CCcEEecccCC
Confidence 9999999999999987777766665 66666555544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=137.01 Aligned_cols=171 Identities=13% Similarity=0.184 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (359)
.++...++..++-.|..++|..+...++ .++ .|.+|+..++.. .+.++.|.||...
T Consensus 45 ~g~~~~ti~skkyG~~~~~Fth~~~~~i-~sStk~d~tIryLsl~d---------------------NkylRYF~GH~~~ 102 (311)
T KOG1446|consen 45 SGKQVKTINSKKYGVDLACFTHHSNTVI-HSSTKEDDTIRYLSLHD---------------------NKYLRYFPGHKKR 102 (311)
T ss_pred CCceeeEeecccccccEEEEecCCceEE-EccCCCCCceEEEEeec---------------------CceEEEcCCCCce
Confidence 4444455556677889999987763344 334 488999999987 6889999999999
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-C
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-K 310 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~ 310 (359)
|.+|+.+|-+. .++|++.|++|++||+|...... .+ +...-..++|.|.|- +||++.....|+|||+|.. +
T Consensus 103 V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg----~l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 103 VNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQG----LL--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred EEEEEecCCCC-eEEecccCCeEEeeEecCCCCce----EE--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCC
Confidence 99999999997 99999999999999999633221 11 223334579999998 9999988889999999987 4
Q ss_pred CceEEee---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 311 SALTSFK---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 311 ~~~~~~~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|..++. .-...++.|.|+|+|++++.+.. ...+.+.|.-+|.+
T Consensus 175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGTV 221 (311)
T ss_pred CCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCcE
Confidence 5666653 44678999999999999998876 67788888877764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=140.93 Aligned_cols=158 Identities=20% Similarity=0.335 Sum_probs=128.5
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|.++|.+++|+.+| ..+++|+.|+.+++||+.+ ..+..+..|.++|..+.|-
T Consensus 66 ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S----------------------~Q~~~v~~Hd~pvkt~~wv 122 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS----------------------GQVSQVAAHDAPVKTCHWV 122 (347)
T ss_pred hhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC----------------------CCeeeeeecccceeEEEEe
Confidence 4456799999999999999 8899999999999999987 3567788999999999996
Q ss_pred CCCC-CeEEEEcCCCcEEEEecCCCCcc----------------------------------------------------
Q 018235 239 PITT-GRLVTGDCNSCIYLWEPASDATW---------------------------------------------------- 265 (359)
Q Consensus 239 p~~~-~~l~sgs~dg~I~lwd~~~~~~~---------------------------------------------------- 265 (359)
+... ..|+|||-|.+|+.||+|+....
T Consensus 123 ~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 123 PGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTR 202 (347)
T ss_pred cCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence 5332 38999999999999999864100
Q ss_pred ------------------------e-----ecCccccCCC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 266 ------------------------N-----VDPNPFIGHS---------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 266 ------------------------~-----~~~~~~~~h~---------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+ ....+|..|. ..|++|+|+|... .|+|++.||++.+||-.
T Consensus 203 ~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 203 CVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence 0 0012233444 2578899999888 99999999999999988
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
.. ..+.+...|..+|.|.+||.+|.++++.+..
T Consensus 282 ar-~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 282 AR-TKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred hh-hhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 76 6677778899999999999999999987654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=143.46 Aligned_cols=153 Identities=18% Similarity=0.261 Sum_probs=127.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC--CCCceEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAID 236 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~ 236 (359)
...+.|.++|+.+..+|.| .+|.+++.||+..+.|++. +..+..... ..-++++.+
T Consensus 297 ~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~---------------------g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS---------------------GSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccceeeeeccCC-cEEEEecCCceEEEEEccC---------------------CcEEEEEeeccccceeEEee
Confidence 3456899999999999999 7888999999999999987 344333322 223689999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|+|- +|++|..||.|+|||+.++.. ...|.+|+++|..|+|+-+|- +||+++.|+.|++||+|.. +...++
T Consensus 355 fHpDgL-ifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl-~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGL-IFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKL-KNFKTI 427 (506)
T ss_pred EcCCce-EEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhh-ccccee
Confidence 999998 999999999999999987442 267999999999999999997 9999999999999999987 455555
Q ss_pred e-cCCCCEEEEEEcCCCCeEEEEee
Q 018235 317 K-AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 317 ~-~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
. .....|++++|...|.+++....
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecc
Confidence 2 23347999999999999988744
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-18 Score=164.15 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=148.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|...|++++.-... ..+++|+.+-.+.+|.+.. ..++..|.+|..+|-+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 445799999999985555 7899999999999999987 456667999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
... +|++|+.+|+|++||+.. .+.+ +++.+|...+..|+|+|.+. ++|+|+.|+-+++||+|.. .|...+.+|
T Consensus 81 ~E~-LlaagsasgtiK~wDlee-Ak~v---rtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEE-AKIV---RTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK-GCSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhh-hhhh---hhhhccccCcceeeeccceE-Eeccccccccceehhhhcc-CceeeecCC
Confidence 987 999999999999999986 4443 78999999999999999999 8899999999999999976 789999999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...|+++.|+|+|.+++.+.. |..++|||...|++
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKL 188 (825)
T ss_pred cceeEEEeecCCCceeeccCC----cceeeeeccccccc
Confidence 999999999999999987765 89999999988764
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=136.06 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=129.3
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCce
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDEG 232 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v 232 (359)
..+..++++|..+|..|+|...+..+||+.+.||.|++||++... ....++... ..+.
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--------------------HSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--------------------HSTIIYEDPSPSTPL 245 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--------------------cceEEecCCCCCCcc
Confidence 345689999999999999999888899999999999999999831 112223322 3478
Q ss_pred EEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 233 YAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
.-|+|+++..+++||-..|+ .|.|.|+|.+..++ ..+.+|++.|+.|+|.|...+.|+||+.|..+-|||+.....
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv---a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV---ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcce---ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 89999999998999877665 58999999876665 789999999999999999999999999999999999987522
Q ss_pred -----ceEEeecCCCCEEEEEEcCC-CCeEEEEe
Q 018235 312 -----ALTSFKAHNADVNVISWNRC-WLAVCWHL 339 (359)
Q Consensus 312 -----~~~~~~~h~~~V~~i~~s~~-~~~l~~~~ 339 (359)
++..+. ..+.||.|.|++. +.+++...
T Consensus 323 ~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 323 ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 343344 5678999999964 45665554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=149.26 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=132.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...|.+++|+|-...+|++|+.|+.|.|||++. ..|+..+.- ...-+.|+|+|.+- .
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---------------------~~Pl~KVi~-~mRTN~IswnPeaf-n 243 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQ---------------------ASPLKKVIL-TMRTNTICWNPEAF-N 243 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEeccc---------------------CCccceeee-eccccceecCcccc-c
Confidence 467899999999989999999999999999998 455554422 33456899999554 8
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++|+.|..++.+|++....++ ..+.+|.+.|.+|.|||.|. -|++||.|++||||..+.+...-.-.......|.
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~---~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPL---NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred eeeccccccceehhhhhhcccc---hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence 9999999999999999865554 77899999999999999999 9999999999999999987221111133455699
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|+.|+.+.++++.+.. ++.|++|.....
T Consensus 320 ~Vk~S~Dskyi~SGSd----d~nvRlWka~As 347 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSD----DGNVRLWKAKAS 347 (433)
T ss_pred EEEEeccccEEEecCC----Ccceeeeecchh
Confidence 9999999999998876 899999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=152.87 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=130.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|..|.|+..+ +|.+++.|.+|+||++.. ..++.+| .|.+.|+|++|+
T Consensus 363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred hhhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEec
Confidence 3556999999999999876 888999999999999987 6788888 589999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
|....+|+||+-||.|+||++.. .+.+ -...-...|++++|.|+|+ ..+.|+-+|.+++|+++.. +....+
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d-~~Vv----~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~l-k~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISD-KKVV----DWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGL-KLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCc-CeeE----eehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCC-eEEEeeeE
Confidence 99888999999999999999965 3322 1222348899999999999 8999999999999999986 332222
Q ss_pred ecC------CCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcC
Q 018235 317 KAH------NADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 ~~h------~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..| ...|+.+.|.|... -++.+.. |..|||+|++.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----DSrIRI~d~~~ 533 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSN----DSRIRIYDGRD 533 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecC----CCceEEEeccc
Confidence 111 22799999998665 2444444 78899999854
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-17 Score=136.85 Aligned_cols=185 Identities=15% Similarity=0.200 Sum_probs=139.9
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--cccccccccc-------------------------
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESETIVG------------------------- 210 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~~~------------------------- 210 (359)
.-+..+|.|.|+++...-.. ..++||+.|.++++||+..... .+........
T Consensus 45 lGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred eeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence 35677999999999999887 7899999999999999987321 1111100000
Q ss_pred -----CCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 211 -----QGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 211 -----~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
..........|+..+..+...++..-|.|.+. .|++|..||.|.+||.+++...+ ..-..|...|++++++
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v---~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELV---DSDEEHSSKINDLQFS 199 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceee---echhhhcccccccccc
Confidence 00001124567888888889999999999999 99999999999999999854443 4556799999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCceE---------------------------------------------------
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRVGKSALT--------------------------------------------------- 314 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~--------------------------------------------------- 314 (359)
|+.. +|+++|.|.+-++||.++. ..+.
T Consensus 200 ~d~T-~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 200 RDRT-YFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred CCcc-eEEecccCccceeeeccce-eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 9998 9999999999999999865 2111
Q ss_pred ----EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 315 ----SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 315 ----~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+++|=++||+++|+|+|+..+.+.. |+.|++...
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGE----DG~VR~h~F 316 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGE----DGYVRLHHF 316 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCC----CceEEEEEe
Confidence 12347778888999998887765544 888887643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=147.68 Aligned_cols=130 Identities=25% Similarity=0.477 Sum_probs=116.2
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
-.+.||+++|..++|+|.+...|||||.|.+|.||++...+. ...+...+.+|...|.-|+|||.-.++|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 357899999999999999988999999999999999976432 11123568899999999999999999999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.||++.++ ..+.++. |...|.+++||.+|.+++..+. |..|+|||+++|++
T Consensus 155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPRRGTV 207 (472)
T ss_pred eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecc----cceeEEEcCCCCcE
Confidence 9999999998 7777777 9999999999999999999998 99999999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=131.13 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=133.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+.+...-+.+|...|++|+.+|-+ ..+.+++.|++|++||++. .++...+..... .
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~---------------------~~cqg~l~~~~~--p 144 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV---------------------KKCQGLLNLSGR--P 144 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC---------------------CCCceEEecCCC--c
Confidence 445557788999999999999998 8999999999999999996 344333332222 2
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceecCcccc---CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNPFI---GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~---~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..++.|.|- ++|+|.....|+|||+|.-++ +- .+|. +.....+.|.|||+|+ .++.+...+.+++.|.-.+
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF---~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPF---TTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDG 219 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCc---eeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCC
Confidence 578999997 888888777999999997533 21 2222 4467889999999999 7777888899999999988
Q ss_pred CCceEEeecCCCCE---EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADV---NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V---~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+.++..+...- -..+|.|++++++.+.. |+.|.+|+.++|..
T Consensus 220 -~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~----dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 220 -TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD----DGTIHVWNLETGKK 266 (311)
T ss_pred -cEeeeEeeccCCCCcceeEEECCCCcEEEEecC----CCcEEEEEcCCCcE
Confidence 5666775554322 46789999999998876 89999999988864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=132.31 Aligned_cols=184 Identities=15% Similarity=0.289 Sum_probs=132.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
+=.+......|.+.|.+|.|.+.. ..++|+++.|++|.||.-... .....+ .......++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~--~~~~~~----------~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK--SEEAHG----------RRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc--cccccc----------ceeEEEEEeecCCcce
Confidence 444567788999999999996533 489999999999999976421 111100 0233455666667778
Q ss_pred EEEEeCCCCCC-eEEEEcCCCcEEEEecCCC-------------------------------------------------
Q 018235 233 YAIDWNPITTG-RLVTGDCNSCIYLWEPASD------------------------------------------------- 262 (359)
Q Consensus 233 ~~l~~sp~~~~-~l~sgs~dg~I~lwd~~~~------------------------------------------------- 262 (359)
+.+.|.|..-| .||+++.||.++||+.-..
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 88888776554 5777778888888765321
Q ss_pred --------------C-cceecCccccCCCCCeEEEEecCCC---CCEEEEEeCCCcEEEEECCCCC--------------
Q 018235 263 --------------A-TWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCSVDGHIAIWDTRVGK-------------- 310 (359)
Q Consensus 263 --------------~-~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s~Dg~I~iwD~r~~~-------------- 310 (359)
+ +|. ....+.+|+.+|++|+|.|+- -++||+++.|| |+||.++...
T Consensus 196 ~~~~~~~Iye~~e~~rKw~-kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWL-KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred ccccceEEEEecCCcceee-eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 1 111 123455889999999999973 24899999999 9999998410
Q ss_pred -----CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 -----SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 -----~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+..+..|++.|+.++||-.|..|..+.. |+++|+|...-
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd----DG~VRLWkany 319 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD----DGCVRLWKANY 319 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEeeeeeEEeecCC----Cceeeehhhhh
Confidence 122335789999999999999999887766 99999998653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=136.61 Aligned_cols=177 Identities=20% Similarity=0.243 Sum_probs=137.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC---cEEecCCCCceEEEEeC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP---LVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~s 238 (359)
..|.|.||.+.+.+....++.+|+.||.|.+||+...... +...... +..+ ...-.+|.-.|..+.|-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-e~s~li~--------k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-EASGLIA--------KHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-hhcccee--------heeeeccccCCccceeeeeeeEEe
Confidence 3799999999999877789999999999999999862210 0000000 0011 11224677789999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC--CCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|...|+|.|++.|.++++||.++... . ..|. -...|+.-+|||-. ..++|+|..+-.|++.|+.++ ...+++
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~-a---~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~L 184 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQE-A---VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTL 184 (397)
T ss_pred eecCceeecccccceEEEeeccccee-e---EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeee
Confidence 99999999999999999999987332 2 1232 45678888888853 248888899999999999998 788899
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+|...|.++.|+|...+++.... -|+.+++||+++.
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgs---aDg~irlWDiRra 221 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGS---ADGAIRLWDIRRA 221 (397)
T ss_pred ccccCceEEEEeccCceeEEEecC---CCceEEEEEeecc
Confidence 999999999999999998877654 3999999999874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=149.82 Aligned_cols=155 Identities=25% Similarity=0.316 Sum_probs=133.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|++.|.++.....+ .++|||-|.++++|.... ...++.+|+..|+++..-
T Consensus 95 ~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~-----------------------l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE-----------------------LVYSLQGHTASVWAVASL 149 (745)
T ss_pred hhhhccccceeeeecCCcC--ceEecccccceEEecchh-----------------------hhcccCCcchheeeeeec
Confidence 4667999999999988877 389999999999998765 345689999999999998
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|.+ .++||+.|.+|++|.- ++.+ ++|.+|+..|..+++-|.+. |+||+.||.|++|++. + .++..+.+
T Consensus 150 ~e~--~~vTgsaDKtIklWk~---~~~l---~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~-g-e~l~~~~g 217 (745)
T KOG0301|consen 150 PEN--TYVTGSADKTIKLWKG---GTLL---KTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD-G-EVLLEMHG 217 (745)
T ss_pred CCC--cEEeccCcceeeeccC---Cchh---hhhccchhheeeeEEecCCC--eEeecCCceEEEEecc-C-ceeeeeec
Confidence 887 7999999999999975 3343 78999999999999999875 9999999999999994 4 78999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.+-|.+++..+.+..++.... |++++||+..
T Consensus 218 htn~vYsis~~~~~~~Ivs~gE----DrtlriW~~~ 249 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGE----DRTLRIWKKD 249 (745)
T ss_pred cceEEEEEEecCCCCeEEEecC----CceEEEeecC
Confidence 9999999997777777776655 9999999754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=141.71 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=135.5
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|.+.|.+++|--.. +-+.+++.|..|++|++.. ...+.++-||.+.|.+|+-..
T Consensus 239 ~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~---------------------~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQ---------------------LSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred cccccccceeeeeeecCc-cceeeeecCCceEEEehhH---------------------hHHHHHHhCCccceeeechhc
Confidence 467999999999998755 6788889999999999987 456778889999999999887
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ec
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (359)
-.+ .+-.|+.|+++++|++....+ -.|.+|.+.+.|++|-.+. .|++||.+|.|.+|++-.. +++++. .+
T Consensus 297 reR-~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KK-kplf~~~~A 367 (479)
T KOG0299|consen 297 RER-CVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKK-KPLFTSRLA 367 (479)
T ss_pred ccc-eEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeeccc-CceeEeecc
Confidence 765 566666999999999965333 3588999999999997665 6999999999999999987 777665 34
Q ss_pred C-----------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 H-----------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h-----------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
| +.+|++|+..|...+++.+.. +++|++|.+..|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~----~G~vrLW~i~~g 412 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSW----SGCVRLWKIEDG 412 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCC----CCceEEEEecCC
Confidence 4 227899999999999988876 899999998876
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=135.47 Aligned_cols=178 Identities=22% Similarity=0.374 Sum_probs=135.3
Q ss_pred CeEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-Cce
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEG 232 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v 232 (359)
......+.+|+..+|.++|... +++.+.+|+.||+|++||++.. ...++..+..|. .+.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPF 120 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcc
Confidence 3344566789999999999875 6799999999999999999983 245566677776 366
Q ss_pred EEEEeCCCCCCeEEEEc----CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 233 YAIDWNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+++-+-.+. ++++|. .+-.+.+||+|...+.+ ..-+..|...|++|+|+|..+++|+|||.||.|.|||+..
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 6777776665 777774 36678999999855533 1345679999999999999999999999999999999987
Q ss_pred CC--CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 309 GK--SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 309 ~~--~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. .++.....|.+.|.++.|...+---++.+.- ...+.+|+...+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH---~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH---METFAIYELEDGS 245 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEc---cCceeEEEccCCC
Confidence 62 2455555688889999999988222333322 4568889877654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-16 Score=149.33 Aligned_cols=160 Identities=13% Similarity=0.240 Sum_probs=132.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
..+-+++.++|+-.| .++|.|++|-.|++-++.. .....++.+|.++|.+|+++|.+.
T Consensus 94 Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D---------------------~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD---------------------SSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eeeccceEEEEecCC-cEEEeecCceeEEEEeccc---------------------cchheeecccCCceeeeeEcCCCC
Confidence 346788999999999 8999999999999999987 566788999999999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccC--------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+||+.++||.|++|++.. +... ..+.+ ....+..++|+|.+. -||..+.|+.|++|+.... ....
T Consensus 152 -fLAvss~dG~v~iw~~~~-~~~~---~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f 224 (933)
T KOG1274|consen 152 -FLAVSSCDGKVQIWDLQD-GILS---KTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQF 224 (933)
T ss_pred -EEEEEecCceEEEEEccc-chhh---hhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eehe
Confidence 999999999999999986 3322 11111 145678899999988 7888889999999998886 5555
Q ss_pred Ee--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ ..+.+.+++++|+|+|++|+.+.- ++.|.||+..+
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred eecccccccceEEEEEcCCCcEEeeecc----CCcEEEEeccc
Confidence 55 445556999999999999999876 88999999874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-16 Score=139.48 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=133.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|.+.|.++.|+|..+.++.+|+.|++|.+.|++... .......+ .+.|-.+.|.|
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~------------------~s~~~wk~---~g~VEkv~w~~ 339 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS------------------NSGKEWKF---DGEVEKVAWDP 339 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc------------------ccCceEEe---ccceEEEEecC
Confidence 3337899999999999999999999999999999999621 01222333 34788999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
..+..++++..||+++-+|+|+.++++ .++.+|.+.|.+|++++.-+++++|++.|+.|++|++... .+- ....|
T Consensus 340 ~se~~f~~~tddG~v~~~D~R~~~~~v---wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~~-~v~~~ 414 (463)
T KOG0270|consen 340 HSENSFFVSTDDGTVYYFDIRNPGKPV---WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SPK-SVKEH 414 (463)
T ss_pred CCceeEEEecCCceEEeeecCCCCCce---eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CCc-ccccc
Confidence 999899999999999999999987766 7889999999999999999999999999999999998865 221 11122
Q ss_pred ---CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 ---NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ---~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
-+...|.+++|+-.+++.-.. ....+++||..++.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNS 452 (463)
T ss_pred cccccceeecccCCCcceEEEecC---ccceEEEeecccCh
Confidence 233677788887765544322 25689999987654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-17 Score=147.64 Aligned_cols=157 Identities=19% Similarity=0.283 Sum_probs=133.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
-...+++.+|+. ++++++..||.|.|||+.. ...+..|+||++.+.||+.+++|. .|
T Consensus 510 paCyALa~spDa-kvcFsccsdGnI~vwDLhn---------------------q~~VrqfqGhtDGascIdis~dGt-kl 566 (705)
T KOG0639|consen 510 PACYALAISPDA-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQGHTDGASCIDISKDGT-KL 566 (705)
T ss_pred hhhhhhhcCCcc-ceeeeeccCCcEEEEEccc---------------------ceeeecccCCCCCceeEEecCCCc-ee
Confidence 456678889998 8899999999999999998 567889999999999999999998 99
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
.||+-|.+|+.||++++.+.. -...++.|.++.++|++. .+|.|-.++.+-|..+... ....+..|.+.|.+
T Consensus 567 WTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVLS 638 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLS 638 (705)
T ss_pred ecCCCccceeehhhhhhhhhh-----hhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEEE
Confidence 999999999999999854322 112357899999999999 9999999999999887764 34556779999999
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.|.+.|++++.... |+.+..|..-.|.
T Consensus 639 lKFa~cGkwfvStGk----DnlLnawrtPyGa 666 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGK----DNLLNAWRTPYGA 666 (705)
T ss_pred EEecccCceeeecCc----hhhhhhccCcccc
Confidence 999999999987765 8889999876654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=125.76 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=131.6
Q ss_pred CCeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc---EEecCCC
Q 018235 154 TPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKFGGHK 229 (359)
Q Consensus 154 ~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~ 229 (359)
++.++ +....-...|.++.|+|.| .+.|.|+...+.+|--.............. ...|. ..-+.|.
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~---------~~pp~v~~kr~khhk 89 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAA---------KQPPSVLCKRNKHHK 89 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccc---------cCCCeEEeeeccccC
Confidence 34433 5666678899999999999 899999999999987665422111111110 01122 2335688
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---------------------------------------------
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------------------------------- 264 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------- 264 (359)
+.||+.+|||.|+ +|++|++|.+|++.-++....
T Consensus 90 gsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 90 GSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred ccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8999999999999 999999999999876653200
Q ss_pred ---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--ecC-----CCCEEEEEEcCCCCe
Q 018235 265 ---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAH-----NADVNVISWNRCWLA 334 (359)
Q Consensus 265 ---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h-----~~~V~~i~~s~~~~~ 334 (359)
.-...+.+.+|++.|.++- +-++. +|++|+.|.+||+||+|-. .++..+ ..| .+.|..++..|.|++
T Consensus 169 dc~~g~~~~a~sghtghilaly-swn~~-m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALY-SWNGA-MFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred ecCCCCcceeecCCcccEEEEE-EecCc-EEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 0001234556777776652 33455 9999999999999999987 667666 223 357999999999999
Q ss_pred EEEEeeecccceEEEEEeCcCCc
Q 018235 335 VCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 335 l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.+.. |....++|++.|.
T Consensus 246 l~sg~~----dssc~lydirg~r 264 (350)
T KOG0641|consen 246 LASGHA----DSSCMLYDIRGGR 264 (350)
T ss_pred eeeccC----CCceEEEEeeCCc
Confidence 988766 7778888887664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=139.43 Aligned_cols=185 Identities=14% Similarity=0.178 Sum_probs=131.2
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--ccccccc---c-------ccCC-CCCC-----
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESET---I-------VGQG-APQV----- 216 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~---~-------~~~~-~~~~----- 216 (359)
..+..++.+|++.|+++.|.... ..+++|+.|.+|++||+..... .+..... . .++- +.++
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEec
Confidence 34557778899999999998766 4488999999999999876211 1100000 0 0000 0000
Q ss_pred CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC----CCCCeEEEEecCCCCCEE
Q 018235 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG----HSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~----h~~~V~~v~~sp~~~~~l 292 (359)
+...++.+...+. .|++|+.++++. .|++++.|.++.+.|+++... . .+|.+ -.+.++.++|||++. ++
T Consensus 330 Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI-~---~~~sA~g~k~asDwtrvvfSpd~~-Yv 402 (459)
T KOG0288|consen 330 RSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEI-R---QTFSAEGFKCASDWTRVVFSPDGS-YV 402 (459)
T ss_pred cCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccE-E---EEeeccccccccccceeEECCCCc-ee
Confidence 2234444444444 799999999998 888889999999999998432 2 22322 224588999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
|+||.||+|+||++.++ ++...+... .+.|++++|+|.|..++.... +..+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk----~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSADK----QKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcccC----CcceEecC
Confidence 99999999999999998 665555333 236999999999999988766 77788883
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=140.52 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=135.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|+.+|+-+.|+++| .++||++.|.+..||.+.... ..+..+++.+|..+|..+.||
T Consensus 218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEEC
Confidence 4456799999999999999 899999999999999987621 135578999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|+.+ +|++|+.+..+.+||..++.. . ..+ .+|..++.+++|.|++. .|++|+.|++|..||+... .+....
T Consensus 279 PDdr-yLlaCg~~e~~~lwDv~tgd~-~---~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn--~~~~W~ 350 (519)
T KOG0293|consen 279 PDDR-YLLACGFDEVLSLWDVDTGDL-R---HLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN--ILGNWE 350 (519)
T ss_pred CCCC-eEEecCchHheeeccCCcchh-h---hhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc--hhhccc
Confidence 9999 999999999999999988433 2 222 23568999999999999 8999999999999999864 333332
Q ss_pred c-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 A-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+ ....|.+++..++|++++.... |..+++++..
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v~~----d~~i~l~~~e 384 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLVTV----DKKIRLYNRE 384 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEEec----ccceeeechh
Confidence 2 2356999999999999988775 7778887643
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=136.98 Aligned_cols=173 Identities=17% Similarity=0.253 Sum_probs=129.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe---cCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~ 230 (359)
...+...+++|.+.||.|+++|..++++.++|.|..|++|+++. ..++.+| .||.+
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRD 182 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccC
Confidence 44566778899999999999999999999999999999999998 5666665 56999
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC----------------c-------ceecCc-cccCCCCCe-------
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----------------T-------WNVDPN-PFIGHSASV------- 279 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~----------------~-------~~~~~~-~~~~h~~~V------- 279 (359)
+|.+++|++++. +|+||+.|.+|++|++.... . ...+.. +-.-|...|
T Consensus 183 eVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g 261 (385)
T KOG1034|consen 183 EVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG 261 (385)
T ss_pred cEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence 999999999999 99999999999999997310 0 000000 000121111
Q ss_pred -----------------------------------------------EEE--EecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 280 -----------------------------------------------EDL--QWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 280 -----------------------------------------------~~v--~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.-| +|.|-.. .||.|...|.|.+||++...
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCC
Confidence 111 2345455 78889999999999999873
Q ss_pred CceE-Ee--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 311 SALT-SF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 311 ~~~~-~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+.. ++ ......|...+|+.++.+|+..+. ++.|--||-
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd----d~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD----DGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeC----CCcEEEEEe
Confidence 2222 22 334567999999999999999887 777777774
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=149.34 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=135.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
....|+.+.|.|..+..+|.+++||.|+||.+......- ....|...+.+|...|++|.|+|....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------~~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------NEMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------ccCCcceeeecccceEEEEEecchhhh
Confidence 456789999999998999999999999999998732110 025677889999999999999999888
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-CCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~ 322 (359)
.|++++.|.+|+|||+++ .... ..+.+|+..|.+++|||+|. .+|+.+.||+|++|..|....++..-.+- ...
T Consensus 692 vLa~asyd~Ti~lWDl~~-~~~~---~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLAN-AKLY---SRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhh-hhhh---heeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988 3333 57899999999999999999 99999999999999999885566543221 223
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
--.|.|.-+|.+++...-.......|.+|+..+
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 356788888888776543223345566665543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=134.19 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=127.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.|.. .+|++|++-| .++|.|+.+|.|.|||+.+ ..+-..+.+|..+|.+|+||++|+
T Consensus 22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR 78 (405)
T ss_pred cCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC
Confidence 3444 8899999999 8999999999999999998 456778999999999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCcccc-------CCC-------------------------------------CC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFI-------GHS-------------------------------------AS 278 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-------~h~-------------------------------------~~ 278 (359)
.|+|+|.|..|.+||+..+. ++... .|. -|. ..
T Consensus 79 -~LltsS~D~si~lwDl~~gs-~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 -KLLTSSRDWSIKLWDLLKGS-PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred -EeeeecCCceeEEEeccCCC-ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999998743 22100 000 000 00
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC-CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-.+..|.+.|. ++.+|...|.+.++|..+. +++..++-.. ..|.+|.++..|.+++..+. |..||.++.+
T Consensus 156 as~~~fdr~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~ 226 (405)
T KOG1273|consen 156 ASHGVFDRRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEIS 226 (405)
T ss_pred cccccccCCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehh
Confidence 11123667777 8999999999999999987 7777765444 77999999999999999987 9999999876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=132.86 Aligned_cols=162 Identities=16% Similarity=0.315 Sum_probs=122.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+-...|..|+|+|+...+++.+|-||+|++|++.... ...+ .....|.+++.+++|+.++.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g------------------~~~~-ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG------------------QLVP-KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC------------------cccc-hhhhccCCCeEEEEEccCCc
Confidence 3457899999999766888899999999999998721 0122 34567889999999999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.+++|++|+.+++||+.+ ++. ..+..|..+|..+.|-+... .+|+|||-|++|++||+|.. .++.++. ...
T Consensus 86 -kVf~g~~Dk~~k~wDL~S-~Q~----~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPe 157 (347)
T KOG0647|consen 86 -KVFSGGCDKQAKLWDLAS-GQV----SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPE 157 (347)
T ss_pred -eEEeeccCCceEEEEccC-CCe----eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccc
Confidence 999999999999999987 443 45778999999999976533 38999999999999999987 7777664 233
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.++.. -..+++.++. ++.|.++..+.+.
T Consensus 158 RvYa~Dv--~~pm~vVata----~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 158 RVYAADV--LYPMAVVATA----ERHIAVYNLENPP 187 (347)
T ss_pred eeeehhc--cCceeEEEec----CCcEEEEEcCCCc
Confidence 4544432 2344455554 5556666665543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=148.08 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=134.4
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...|++++.+|+. .++|.|..||.|+||++.. ..+..+|.||...|+.|.|...|. +
T Consensus 65 k~evt~l~~~~d~-l~lAVGYaDGsVqif~~~s---------------------~~~~~tfngHK~AVt~l~fd~~G~-r 121 (888)
T KOG0306|consen 65 KAEVTCLRSSDDI-LLLAVGYADGSVQIFSLES---------------------EEILITFNGHKAAVTTLKFDKIGT-R 121 (888)
T ss_pred cceEEEeeccCCc-ceEEEEecCceEEeeccCC---------------------CceeeeecccccceEEEEEcccCc-e
Confidence 3689999999988 7899999999999999987 467789999999999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|+||+.|+.|-+||+-.. .-. ..+.||+..|+..-|..... +++++|.|+.|++||+.+. .+..+.-.|.+.|+
T Consensus 122 laSGskDt~IIvwDlV~E-~Gl---~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw 195 (888)
T KOG0306|consen 122 LASGSKDTDIIVWDLVGE-EGL---FRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIW 195 (888)
T ss_pred EeecCCCccEEEEEeccc-eee---EEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccc-eeeeEEecccceEE
Confidence 999999999999999763 222 56899999999998887555 9999999999999999997 78888889999999
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+++.+ ..++.+.. +..+++|+.
T Consensus 196 ~l~~~~--~~lvt~~~----dse~~v~~L 218 (888)
T KOG0306|consen 196 ALVLDE--KLLVTAGT----DSELKVWEL 218 (888)
T ss_pred EEEEec--ceEEEEec----CCceEEEEe
Confidence 999998 55555544 677889987
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-15 Score=128.75 Aligned_cols=209 Identities=17% Similarity=0.221 Sum_probs=148.5
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
+|+-..||=..-++.-.+..+-|-|.+.+.++. .++.|+ -+++|..+++. .
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~------------~~~~G~-----~dg~vr~~Dln-~----------- 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADES------------TIVTGG-----LDGQVRRYDLN-T----------- 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCc------------eEEEec-----cCceEEEEEec-C-----------
Confidence 677788888888999999999999999999863 566676 57899999883 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (359)
.+ ..++-.|..+|.||.+++.. ..+++|+-|++|++||.+..
T Consensus 85 ----------------------------~~--~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~------- 126 (323)
T KOG1036|consen 85 ----------------------------GN--EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNK------- 126 (323)
T ss_pred ----------------------------Cc--ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccc-------
Confidence 11 12344799999999999876 78999999999999999851
Q ss_pred cccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---------------------
Q 018235 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------- 264 (359)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--------------------- 264 (359)
.++.++.. ...|++++.+- . .|+.|..+..+.+||+|+...
T Consensus 127 --------------~~~~~~d~-~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 127 --------------VVVGTFDQ-GKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN 188 (323)
T ss_pred --------------cccccccc-CceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence 11112211 11444444432 1 444444445555555443210
Q ss_pred -----------------------ceecCccccCCC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 265 -----------------------WNVDPNPFIGHS---------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 265 -----------------------~~~~~~~~~~h~---------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
.......|..|. .+|++|+|||-.. .||||+.||.|.+||+.+. +.
T Consensus 189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r-Kr 266 (323)
T KOG1036|consen 189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR-KR 266 (323)
T ss_pred CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch-hh
Confidence 000012344453 3789999999988 9999999999999999987 67
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
+..+......|.+++|+.+|..|+.+...
T Consensus 267 l~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hhhccCCCCceEEEEeccCCCeEEEEech
Confidence 77776667779999999999999987654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=143.17 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=138.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
++..+.+-.|.|+++.|.+++ ..+++.+.|+.+++|++.. .+...+|.||++.|+++.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~---------------------~r~~~TLsGHtdkVt~ak 268 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS---------------------LRLRHTLSGHTDKVTAAK 268 (459)
T ss_pred hhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccc---------------------hhhhhhhcccccceeeeh
Confidence 345666778999999999999 5666678999999999997 677889999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|..... .+++|+.|.+|++||+.. ..+. ...+ ..+.+++|..+ ...++||-.|+.||+||+|+. .+...+
T Consensus 269 ~~~~~~-~vVsgs~DRtiK~WDl~k-~~C~--kt~l--~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv 338 (459)
T KOG0288|consen 269 FKLSHS-RVVSGSADRTIKLWDLQK-AYCS--KTVL--PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSA-DKTRSV 338 (459)
T ss_pred hhcccc-ceeeccccchhhhhhhhh-hhee--cccc--ccccccceEec---ceeeeecccccceEEEeccCC-ceeeEe
Confidence 988776 799999999999999987 3332 1223 34677888876 238999999999999999998 778888
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCccC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEIR 359 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v~ 359 (359)
..+. .|+++..++++.-++...+ |..+.+.|.++..|+
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSR----DDTLKVIDLRTKEIR 376 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecC----CCceeeeecccccEE
Confidence 7766 7999999999998887766 889999999987664
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-17 Score=135.48 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=142.4
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..-.+-++.+|+|.|+......+. ...|+++.|-+-+|||.-+ +..+.+| .|..-|.
T Consensus 48 tgdwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk 104 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVK 104 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheee
Confidence 445667888999999999998876 7889999999999999876 5666777 4788899
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+.+.. +|++|+.+..++|||++....+. ..+.+|++.|..+-|+.... .|+|.+.|++||+||.|++ ..+
T Consensus 105 ~~af~~ds~-~lltgg~ekllrvfdln~p~App---~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTg-t~v 178 (334)
T KOG0278|consen 105 AVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPP---KEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTG-TEV 178 (334)
T ss_pred eEEecccch-hhhccchHHHhhhhhccCCCCCc---hhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccC-cEE
Confidence 999999998 99999999999999998754443 77899999999999999888 7777799999999999998 666
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+++. .+.+|+++..+++|.+|.... ...|.+||+.+
T Consensus 179 ~sL~-~~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 179 QSLE-FNSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred EEEe-cCCCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 7765 566799999999999987764 35689998765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=155.22 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=179.2
Q ss_pred eeeCCccc--------CCCCceeeeChhHh-------hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCC
Q 018235 36 VWQPGVDK--------LEEGEELQCDPTAY-------NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK 100 (359)
Q Consensus 36 ~~~~~~~~--------~~~~~~l~~~~~~Y-------~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~ 100 (359)
+|-+..+. +++|..--||+... -+.+.-...-|.+.+|+-|.. ...|..|
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q----------~nlLASG----- 135 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ----------GNLLASG----- 135 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC----------Cceeecc-----
Confidence 47765443 55666666776553 223344556778888887763 1234333
Q ss_pred CCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcE
Q 018235 101 PSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180 (359)
Q Consensus 101 ~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~ 180 (359)
+.+..|.||++.++.. |.- .-...-.+.|.+++|+.+-.++
T Consensus 136 a~~geI~iWDlnn~~t--------------------------------------P~~-~~~~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPET--------------------------------------PFT-PGSQAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred CCCCcEEEeccCCcCC--------------------------------------CCC-CCCCCCcccceEeccchhhhHH
Confidence 4678999999965321 111 0033567899999999988899
Q ss_pred EEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEeCCCCCCeEEEEcCCC---cEE
Q 018235 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPITTGRLVTGDCNS---CIY 255 (359)
Q Consensus 181 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~sgs~dg---~I~ 255 (359)
||+++.+|.+.|||++. .+++..+..|.. .+..|.|+|++...|++++.|. .|.
T Consensus 177 LAS~s~sg~~~iWDlr~---------------------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRK---------------------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred hhccCCCCCceeccccC---------------------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 99999999999999998 466666666554 5779999999988888887664 689
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeE
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAV 335 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l 335 (359)
+||+|....++ +.+.+|...|.++.|++.+.++++||+.|+.|.+|+..++ +.+..+.....++..+.|+|....+
T Consensus 236 lWDlR~assP~---k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 236 LWDLRFASSPL---KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred eecccccCCch---hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcch
Confidence 99999866555 7889999999999999999889999999999999999998 7888888888899999999998855
Q ss_pred EEEeeecccceEEEEEeCcCC
Q 018235 336 CWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 336 ~~~~~~~~~d~~i~iwd~~~g 356 (359)
+....- ++.|.|+....+
T Consensus 312 ~A~asf---dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 312 MAAASF---DGKISIYSLQGT 329 (1049)
T ss_pred hhhhee---ccceeeeeeecC
Confidence 433222 666777765443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=142.94 Aligned_cols=160 Identities=14% Similarity=0.251 Sum_probs=127.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.|+-......-..-|..+...|++ .-+++|++-.+|.|||+..... .....+......++
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp-------------------rikaeltssapaCy 513 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP-------------------RIKAELTSSAPACY 513 (705)
T ss_pred CccccccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCc-------------------chhhhcCCcchhhh
Confidence 455444444456778899999999 6777889999999999988321 11223334445789
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+|+.||+.. ..++|..||.|.|||+++ ...+ +.|.||+..+.||..+++|. -|.||+-|.+||-||+|.+ ..+
T Consensus 514 ALa~spDak-vcFsccsdGnI~vwDLhn-q~~V---rqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlreg-rql 586 (705)
T KOG0639|consen 514 ALAISPDAK-VCFSCCSDGNIAVWDLHN-QTLV---RQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREG-RQL 586 (705)
T ss_pred hhhcCCccc-eeeeeccCCcEEEEEccc-ceee---ecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhh-hhh
Confidence 999999998 888888899999999987 4444 88999999999999999999 9999999999999999998 333
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
... ...+.|.++..+|++.+++.++.+
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeeccc
Confidence 332 235679999999999999999873
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-15 Score=127.55 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=130.7
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
|....++-+|+|.. .+.+++ ..++++..||+++. .+...+-..|...+..|+|+|...
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~--------------------~~~~sI~dAHgq~vrdlDfNpnkq 227 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM--------------------KKNNSIEDAHGQRVRDLDFNPNKQ 227 (370)
T ss_pred ccceecccccCCCCccceEEE-eCCCcEEEEEccch--------------------hhhcchhhhhcceeeeccCCCCce
Confidence 66677788999833 367776 55799999999983 233444567888999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC------------
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------ 310 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------ 310 (359)
.+|+||+.||.|+|||.|....++ +.+.+|...|.+|.|+|....++++++.|..|.+|....-.
T Consensus 228 ~~lvt~gDdgyvriWD~R~tk~pv---~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des 304 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKTKFPV---QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES 304 (370)
T ss_pred EEEEEcCCCccEEEEeccCCCccc---cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccc
Confidence 899999999999999999855554 78899999999999999988899999999999999654321
Q ss_pred ----------------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 311 ----------------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 311 ----------------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..+.++..|...|.+++|+.-.+++..++.. |+.+.|=.
T Consensus 305 e~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY---DGRviIs~ 359 (370)
T KOG1007|consen 305 ESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY---DGRVIISS 359 (370)
T ss_pred cCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc---CceEEeec
Confidence 1234567799999999999999998888775 77666543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=137.02 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=137.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v 232 (359)
...++..+.+|+..|+++.++... .+||+++..|.|.|..+.+. .....|... ...+
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~---------------------~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTK---------------------QKTTTFTIDSGQSV 167 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccC---------------------ccccceecCCCCeE
Confidence 334446677899999999999877 79999999999999999872 222334332 3356
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
.-|.+||..+.+|.+++.+|.|.+||+.. ..+. ......|..+...|||+|.+.-+|++.+.|+.|.+||++.. ..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~--~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s 243 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPI--FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-AS 243 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccC-CCcc--cchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cc
Confidence 68999999998899999999999999965 3333 24456799999999999998889999999999999999975 43
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
...+ ....+...++|.++|.+|+.+.. .+.|..||++.-
T Consensus 244 ~~~l-~y~~Plstvaf~~~G~~L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 244 TDRL-TYSHPLSTVAFSECGTYLCAGNS----KGELIAYDMRST 282 (673)
T ss_pred ccee-eecCCcceeeecCCceEEEeecC----CceEEEEecccC
Confidence 3333 35668899999999999999876 666788887753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=136.77 Aligned_cols=160 Identities=13% Similarity=0.233 Sum_probs=136.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|...|.+++.++++ .+||||+.|..|.||+..+ .+++..|.+|.+.|.+|+|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4899999999999999 8999999999999999998 68888999999999999998766
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .|++++.|++|++|++.. ...+ .++.+|.+.|.+|.-..-+. ++..|+.|+++++|++.. .....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~-~s~v---etlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQ-LSYV---ETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhH-hHHH---HHHhCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCC
Confidence 5 899999999999999977 4444 78999999999998877777 777777999999999955 34445678998
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+-|++|-.+..++ .+.. ++.|.+|...+.
T Consensus 329 sidcv~~In~~Hfv-sGSd----nG~IaLWs~~KK 358 (479)
T KOG0299|consen 329 SIDCVAFINDEHFV-SGSD----NGSIALWSLLKK 358 (479)
T ss_pred CeeeEEEeccccee-eccC----CceEEEeeeccc
Confidence 99999998766654 3433 788999987654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=136.01 Aligned_cols=169 Identities=20% Similarity=0.298 Sum_probs=125.0
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+-.|...||++||+|.| .++|||+++|.|.+|-..... .. .... .............++.+|..+++.|+|
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~-~~-~~d~---e~~~~ke~w~v~k~lr~h~~diydL~W 131 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVR-IF-DADT---EADLNKEKWVVKKVLRGHRDDIYDLAW 131 (434)
T ss_pred eecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcC-Cc-cccc---hhhhCccceEEEEEecccccchhhhhc
Confidence 35667899999999999999 899999999999999876410 00 0000 000000123445678899999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|++. .+++|+.|.++++||+.. +... ..+..|...|..++|.|-++ .+++-+.|+..+++.+... +.+..+.
T Consensus 132 s~d~~-~l~s~s~dns~~l~Dv~~-G~l~---~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~-~~~~~~~ 204 (434)
T KOG1009|consen 132 SPDSN-FLVSGSVDNSVRLWDVHA-GQLL---AILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLK-QVIKRHG 204 (434)
T ss_pred cCCCc-eeeeeeccceEEEEEecc-ceeE---eeccccccccceeecchhhh-hhhhhccCcccceeeeeee-eeeeeee
Confidence 99998 999999999999999988 5554 67889999999999999999 9999999987777766543 1111110
Q ss_pred -------------------cC----CCCEEEEEEcCCCCeEEEEe
Q 018235 318 -------------------AH----NADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 318 -------------------~h----~~~V~~i~~s~~~~~l~~~~ 339 (359)
-| ......++|+|+|.+++...
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 01 12346689999999887653
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-15 Score=127.69 Aligned_cols=215 Identities=18% Similarity=0.248 Sum_probs=167.4
Q ss_pred CceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCC
Q 018235 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~ 126 (359)
..+|-+.=.+||.+-..+. ..|+++-||+ -+|.+|- ++.|.|++++. +.+.-
T Consensus 142 tG~lraSy~~ydh~de~ta---AhsL~Fs~DG-----------eqlfaGy------krcirvFdt~R---pGr~c----- 193 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTA---AHSLQFSPDG-----------EQLFAGY------KRCIRVFDTSR---PGRDC----- 193 (406)
T ss_pred ccccccchhhhhhHHhhhh---heeEEecCCC-----------CeEeecc------cceEEEeeccC---CCCCC-----
Confidence 3466777788988776643 4689999996 4777776 78999998753 22210
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 018235 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206 (359)
Q Consensus 127 ~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 206 (359)
+ --+.+..-..+..|.|.+++|+|..+..+|.++...++-||.-..
T Consensus 194 ------------~-------------vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--------- 239 (406)
T KOG2919|consen 194 ------------P-------------VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--------- 239 (406)
T ss_pred ------------c-------------chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------
Confidence 0 033333445677899999999999988999999999999998776
Q ss_pred ccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEecCCCCcceecCccccCCCC-CeEEEEe
Q 018235 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSA-SVEDLQW 284 (359)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v~~ 284 (359)
..|++.+-+|.+.|+.|.|+++|+ .|.+|+. +-.|..||+|....++ ..+..|.. .-..|.|
T Consensus 240 ------------~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 240 ------------RRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV---YALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh---hhhhhhccCccceEEE
Confidence 789999999999999999999999 8888875 5689999999866555 45666655 3333444
Q ss_pred --cCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 285 --SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 285 --sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.|.+. +||+|+.||.|++||+......+..+..|...||.+++||--+++++...
T Consensus 304 Dld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 304 DLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 57888 99999999999999999864667777889999999999998777776644
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=135.59 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=134.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
+.+--+|.|+++..+|.| ++++.|+..|.+++|.+.+ +..+.++.+|-..|++|.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 455668999999999999 8888888999999999998 788888999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCC-----CcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCce
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASD-----ATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++. +|+||+.||.|++|.+... .....+.+.|..|+-+|+++...+-+ ...++|+|.|.+|++||+-.+ ..+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eee
Confidence 999 9999999999999987431 11222346788999999999987763 238999999999999999997 555
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.++. ....++++...|.+..+..+.+ ++.|-+..
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~----~G~I~~~~ 245 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTE----EGKIFQNL 245 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCC----cceEEeee
Confidence 5553 5667999999998888777765 55544433
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=140.66 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=132.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|+..|+++...|.+ .++||+.|.+|++|.-. ..+.+|.||++-|.+|+
T Consensus 132 l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----------------------~~l~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 132 LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG-----------------------TLLKTFSGHTDCVRGLA 186 (745)
T ss_pred hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC-----------------------chhhhhccchhheeeeE
Confidence 345578999999999999987 88999999999999753 45788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
.-+.+ .|+||+.||.|++|++ + +..+ ..+.+|++-|++++..+.+. +++||+.|++++||+.. .+.+.+
T Consensus 187 vl~~~--~flScsNDg~Ir~w~~-~-ge~l---~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I 255 (745)
T KOG0301|consen 187 VLDDS--HFLSCSNDGSIRLWDL-D-GEVL---LEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---ECVQVI 255 (745)
T ss_pred EecCC--CeEeecCCceEEEEec-c-Ccee---eeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC---ceEEEE
Confidence 99876 5999999999999999 4 4444 57889999999999777777 99999999999999977 455666
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.-....|+++++=++|.+++.+ . |+.|+||-...
T Consensus 256 ~lPttsiWsa~~L~NgDIvvg~-S----DG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDIVVGG-S----DGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCCEEEec-c----CceEEEEEecc
Confidence 5445579999998888876554 3 89999997653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=136.03 Aligned_cols=158 Identities=20% Similarity=0.388 Sum_probs=129.8
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
..+|..+.|.+...+.+|||+.|..|+||-+......... .....+..+..|...|+++.|+|.|. +
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge-l 79 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE-L 79 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-e
Confidence 4688999998887569999999999999998763211100 01344567889999999999999999 9
Q ss_pred EEEEcCCCcEEEEecC--------C-----CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 245 LVTGDCNSCIYLWEPA--------S-----DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~--------~-----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
||||+.+|.|.+|... + ...|++ .+.+.+|...|.+++|+|++. ++++++.|.++++||++.+ .
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G-~ 156 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG-Q 156 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccc-e
Confidence 9999999999999765 1 123443 356778999999999999999 9999999999999999998 7
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
....+..|...|+.++|.|.+++++.-
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhh
Confidence 777789999999999999988876543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=127.27 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=133.3
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccc--------cc-cccccccCCCCCC------CC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--------LA-ESETIVGQGAPQV------SN 218 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--------~~-~~~~~~~~~~~~~------~~ 218 (359)
.|.....+.+|.+.|++++|+.+| ..+||++.|+.|+||+++...+. +. .+...+.+..+-. ..
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 344556778999999999999999 89999999999999999873321 00 0111111111000 00
Q ss_pred CCCcE-----------------------EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC
Q 018235 219 QSPLV-----------------------KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (359)
Q Consensus 219 ~~~~~-----------------------~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (359)
+..++ .-..|...+..+-..-.+. +|+|++.|..|+||+++ ++.+ ..+...
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L---~~idtn 227 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLL---QSIDTN 227 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Ccee---eeeccc
Confidence 11111 1123444455555555665 99999999999999997 4443 444445
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-----C--CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEE
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K--SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLF 348 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~--~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i 348 (359)
...-+..+.||+|. ++|+++..--|++|.+--. + ..+..+.+|.+.|..++||+++..++.... |+.+
T Consensus 228 q~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk----DG~w 302 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK----DGKW 302 (420)
T ss_pred cccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec----CCcE
Confidence 56667788999999 9999999889999975322 1 245667999999999999999999888876 9999
Q ss_pred EEEeCc
Q 018235 349 MILDCS 354 (359)
Q Consensus 349 ~iwd~~ 354 (359)
++||+.
T Consensus 303 riwdtd 308 (420)
T KOG2096|consen 303 RIWDTD 308 (420)
T ss_pred EEeecc
Confidence 999864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=125.92 Aligned_cols=214 Identities=12% Similarity=0.164 Sum_probs=166.5
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
.+--|..+--|-+|. ..++++. ..+.|.|+++.+-
T Consensus 8 ~~~~pitchAwn~dr-----------t~iAv~~-----~~~evhiy~~~~~----------------------------- 42 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDR-----------TQIAVSP-----NNHEVHIYSMLGA----------------------------- 42 (361)
T ss_pred eccCceeeeeecCCC-----------ceEEecc-----CCceEEEEEecCC-----------------------------
Confidence 344566666677763 4566666 3568999998410
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.-....+.+..|...|+.|.|.|.. +.|+||+.|..-++|...... ..+|..
T Consensus 43 ---------~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~------------------~Wkptl 94 (361)
T KOG1523|consen 43 ---------DLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG------------------TWKPTL 94 (361)
T ss_pred ---------CCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC------------------eeccce
Confidence 0245567888999999999999998 789999999999999984311 367888
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+..|.....++.|+|... .||+|+....|.||=+.....|-+....-..+.+.|.++.|+|++- ++|+||.|+.+|+
T Consensus 95 vLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rV 172 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRV 172 (361)
T ss_pred eEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeE
Confidence 8888999999999999998 9999999999999988776667554455566889999999999998 9999999999999
Q ss_pred EECC-----CC------------CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 304 WDTR-----VG------------KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 304 wD~r-----~~------------~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..- .. ...+..+....+.|..+.|+|.|..|+|... |..+.+-|....
T Consensus 173 fSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H----ds~v~~~da~~p 238 (361)
T KOG1523|consen 173 FSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH----DSTVSFVDAAGP 238 (361)
T ss_pred EEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC----CCceEEeecCCC
Confidence 8432 11 0122233345678999999999999999877 777887776544
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=137.05 Aligned_cols=173 Identities=14% Similarity=0.213 Sum_probs=130.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc--EEecCCCCceEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAID 236 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~ 236 (359)
.....|.+.|..+.|.| +...|++++.|.++++||+.. ...+ ..+.||...+-+++
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhh
Confidence 45668999999999999 668999999999999999987 2332 35889999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCc-------------ce---ecC-------ccccCCCCCeEE---EEecCCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDAT-------------WN---VDP-------NPFIGHSASVED---LQWSPTEPD 290 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~-------------~~---~~~-------~~~~~h~~~V~~---v~~sp~~~~ 290 (359)
|+|..+..|++|+.||.|.|||++..+. .. .+. +.-.+|...|.. +-+..++.
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~- 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES- 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-
Confidence 9999999999999999999999985320 00 001 111234444444 55556666
Q ss_pred EEEEEeC-CCcEEEEECCCCC-----CceE--EeecC---CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 291 VFASCSV-DGHIAIWDTRVGK-----SALT--SFKAH---NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 291 ~las~s~-Dg~I~iwD~r~~~-----~~~~--~~~~h---~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.||+++. |+.|+|||+|... .+.. .+..| .-.+.++.....|.+|...+. |+.|.+|++.+..+
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT----DNSIYFYNMRSLSI 305 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec----CCcEEEEeccccCc
Confidence 7888887 9999999999862 1221 22233 335778888888999998887 99999999887554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=137.50 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=129.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..|.++|..++....+ .++++++.+|.+.+||+.. ..++..+. -..++.++..+...
T Consensus 490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~---------------------k~l~~~l~-l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK---------------------KVLKKSLR-LGSSITGIVYHRVS 546 (910)
T ss_pred ccccCceeEEEecCCC-ceEEEccCcceEEEEecCC---------------------cceeeeec-cCCCcceeeeeehh
Confidence 4899999999998877 7899999999999999987 23334443 23467778888777
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .++.+..|-.|.++|..+ .+.+ +.|.||+..|++++|||+|+ .|++++.|++||+||+-++ ..+-.+ .-..
T Consensus 547 ~-l~a~~~ddf~I~vvD~~t-~kvv---R~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~-~lID~~-~vd~ 618 (910)
T KOG1539|consen 547 D-LLAIALDDFSIRVVDVVT-RKVV---REFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG-TLIDGL-LVDS 618 (910)
T ss_pred h-hhhhhcCceeEEEEEchh-hhhh---HHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc-ceeeeE-ecCC
Confidence 6 889998899999999976 4443 88999999999999999999 9999999999999999997 444444 3566
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+...++|+|+|.+|++.... .+-|.+|-
T Consensus 619 ~~~sls~SPngD~LAT~Hvd---~~gIylWs 646 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVD---QNGIYLWS 646 (910)
T ss_pred cceeeEECCCCCEEEEEEec---CceEEEEE
Confidence 78999999999999988762 35588884
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=132.53 Aligned_cols=179 Identities=18% Similarity=0.235 Sum_probs=139.7
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-+.++.+|.|+|-|+.+.+.+ ..+.+|+-||+|+.|++.......... .......++.||++.++.++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~-----------dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSY-----------DPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred eeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCccccc-----------Ccchhccceeccccceeeee
Confidence 346788999999999999988 899999999999999887311110000 01233457899999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCccee------------c----------------------------Ccccc---
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------D----------------------------PNPFI--- 273 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~----------------------------~~~~~--- 273 (359)
+|+... +|++|+.||++++|.+.....+.. . ...+.
T Consensus 404 ~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 404 LSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred eccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC
Confidence 999987 899999999999998864211000 0 00000
Q ss_pred ----CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 274 ----GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 274 ----~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
.....++-|.++|+.. +.+++..|+.|+++|..++ .+++...+|...++++++.|+|.+|+.+.. |+.++
T Consensus 483 ~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~----d~sv~ 556 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSH----DGSVR 556 (577)
T ss_pred CCcccccCccceEEecCCCC-eeEecccCCceeccccccc-ccchheeeccceecceeecCCCceEEeecC----Cceee
Confidence 0123467788999997 9999999999999999998 888889999999999999999999998877 88899
Q ss_pred EEeCc
Q 018235 350 ILDCS 354 (359)
Q Consensus 350 iwd~~ 354 (359)
+|...
T Consensus 557 l~kld 561 (577)
T KOG0642|consen 557 LWKLD 561 (577)
T ss_pred hhhcc
Confidence 99763
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-14 Score=135.48 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=138.0
Q ss_pred EEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccc-----c----------c--ccc----------
Q 018235 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAES-----E----------T--IVG---------- 210 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~-----~----------~--~~~---------- 210 (359)
.....|..+|+.+.|.... +.-|++++.||.|..|+++......... . . ...
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 4445799999999997644 1458888889999999876522110000 0 0 000
Q ss_pred --CCCCCC---------CCC----CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC
Q 018235 211 --QGAPQV---------SNQ----SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (359)
Q Consensus 211 --~~~~~~---------~~~----~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (359)
...+.+ ... +++..+..|.+.|+++.++|.+.-.|+|++ |.+++||.......++ ..+..+
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl---~~~~~~ 440 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL---LSLDSS 440 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc---hhhhhc
Confidence 000000 111 335567778899999999999986666666 9999999876323343 556678
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...|.+++|||..+.+||++..||.|.|||++.. ..|+.+...+....+.+.|++.|++++.+.. .+.+.+|+..
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~----~G~~~~~~l~ 516 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA----NGTTHILKLS 516 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC----CCcEEEEEcC
Confidence 8889999999999999999999999999999876 3577777777778899999999999999987 6778888875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=126.87 Aligned_cols=196 Identities=13% Similarity=0.188 Sum_probs=152.1
Q ss_pred EeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 018235 75 VRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGT 154 (359)
Q Consensus 75 ~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~ 154 (359)
+|+..|..|.-++..--+++|| ..|.|.--.++
T Consensus 325 lPe~~G~iRtv~e~~~di~vGT-----trN~iL~Gt~~------------------------------------------ 357 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGT-----TRNFILQGTLE------------------------------------------ 357 (626)
T ss_pred CchhcCCeeEEecCCCcEEEee-----ccceEEEeeec------------------------------------------
Confidence 4666677776666555588888 46677655552
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.-.....++|....+.++.+|.. ..++|++.|+.|+||+ . .++..+.. -..++.+
T Consensus 358 ~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~---------------------~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--D---------------------HKLEWTKI-IEDPAEC 412 (626)
T ss_pred CCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--C---------------------CceeEEEE-ecCceeE
Confidence 12335667999999999999998 7999999999999999 3 24444433 2458889
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
++|+|.+ .+|.|...|...+.|..+ ...+ .+.....+++++.|+|+|. +||.|+.|+.|.||-+........
T Consensus 413 ~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv----~~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 413 ADFHPSG--VVAVGTATGRWFVLDTET-QDLV----TIHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eeccCcc--eEEEeeccceEEEEeccc-ceeE----EEEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEE
Confidence 9999998 799999999999999876 3332 2222378999999999999 999999999999999887644554
Q ss_pred Ee-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+ .-|.++|+.+.|+++++++..... |..|..|..+
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~----d~eiLyW~~~ 521 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSG----DYEILYWKPS 521 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccC----ceEEEEEccc
Confidence 44 445689999999999999987765 8889999554
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-14 Score=137.75 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=115.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+++|.++|.++.|.|++ +++|+.+-||.|+||++....-...-.+ ..+...+. ....+.-++|+
T Consensus 132 ~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~------------v~k~n~~~-~s~i~~~~aW~ 197 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG------------VDKDNEFI-LSRICTRLAWH 197 (933)
T ss_pred eeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc------------CCcccccc-ccceeeeeeec
Confidence 5678999999999999999 8999999999999999987321110000 01111111 13456678999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++. .|+....|+.|++|+... .......+ ...+.+.+.+++|+|+|. +||+++.||.|.|||..+. .. ..
T Consensus 198 Pk~g-~la~~~~d~~Vkvy~r~~-we~~f~Lr-~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~-~~----~~ 268 (933)
T KOG1274|consen 198 PKGG-TLAVPPVDNTVKVYSRKG-WELQFKLR-DKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTH-ER----HE 268 (933)
T ss_pred CCCC-eEEeeccCCeEEEEccCC-ceeheeec-ccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccc-hh----cc
Confidence 9986 788888899999999765 33221111 122445599999999999 9999999999999999974 11 22
Q ss_pred CCCCEEEEEEcCCCCeEEEEee
Q 018235 319 HNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
....|.|++|.|+...+.+...
T Consensus 269 ~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred ccceeEEEecCCCCCeeEEEee
Confidence 3456999999999887766554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=136.99 Aligned_cols=152 Identities=16% Similarity=0.256 Sum_probs=124.3
Q ss_pred EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC
Q 018235 184 WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA 263 (359)
Q Consensus 184 ~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~ 263 (359)
.+.-|.|-||+++...+... ..+-.+ .....|+.+.|.|....+||.+..||.|+||.+..++
T Consensus 599 ~g~gG~iai~el~~PGrLPD----------------gv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD----------------GVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc----------------cccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 45579999999998432211 111112 1245789999999988899999999999999987643
Q ss_pred c---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 264 T---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 264 ~---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
- ...+...+.+|...|+.+.|||--..+||+++.|-+|+|||+++. .....+.+|...|..++|+|+|+.++..+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeec
Confidence 2 222345678999999999999998889999999999999999998 667788999999999999999999998887
Q ss_pred ecccceEEEEEeCcCCc
Q 018235 341 VMMEHFLFMILDCSRGE 357 (359)
Q Consensus 341 ~~~~d~~i~iwd~~~g~ 357 (359)
|+.|++++++.++
T Consensus 741 ----Dg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 741 ----DGTLRVYEPRSRE 753 (1012)
T ss_pred ----CceEEEeCCCCCC
Confidence 9999999998875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=129.04 Aligned_cols=159 Identities=12% Similarity=0.181 Sum_probs=120.1
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccC-------CCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ-------GAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+..|++|+|-|.++.+|..+..+|.+++||...........-...+. .........|+..+.--...|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999888888888999999999874321111111111110 00001223677666666678999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|++. +||+.+.||.++||+..+ ...+ ..+...-+...||+|||+++ +|++|+.|-.|.||.+... +.+..-.
T Consensus 299 S~DG~-~LA~VSqDGfLRvF~fdt-~eLl---g~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er-RVVARGq 371 (636)
T KOG2394|consen 299 SPDGK-YLATVSQDGFLRIFDFDT-QELL---GVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER-RVVARGQ 371 (636)
T ss_pred cCCCc-eEEEEecCceEEEeeccH-HHHH---HHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccc-eEEEecc
Confidence 99998 999999999999999976 3332 23333447889999999999 9999999999999999986 6676779
Q ss_pred cCCCCEEEEEEcC
Q 018235 318 AHNADVNVISWNR 330 (359)
Q Consensus 318 ~h~~~V~~i~~s~ 330 (359)
+|.++|+.++|.|
T Consensus 372 GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKSWVSVVAFDP 384 (636)
T ss_pred ccccceeeEeecc
Confidence 9999999999984
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=113.83 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=133.4
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCc
Q 018235 88 HTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167 (359)
Q Consensus 88 ~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~ 167 (359)
..+||++|. ....|.|+++..+-... . ++ +....+....+|.++
T Consensus 21 ~~~~l~agn-----~~G~iav~sl~sl~s~s------------------------a----~~---~gk~~iv~eqahdgp 64 (325)
T KOG0649|consen 21 SKQYLFAGN-----LFGDIAVLSLKSLDSGS------------------------A----EP---PGKLKIVPEQAHDGP 64 (325)
T ss_pred cceEEEEec-----CCCeEEEEEehhhhccc------------------------c----CC---CCCcceeeccccCCC
Confidence 347899988 45689999985331110 0 11 122233455799999
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|+.++|.. .++.+|++ |.|+-|..+............. ...|.++-...-.+|++|...|... -++.
T Consensus 65 iy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe--------~~~P~~~~~~evPeINam~ldP~en-Si~~ 131 (325)
T KOG0649|consen 65 IYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWE--------VKIPMQVDAVEVPEINAMWLDPSEN-SILF 131 (325)
T ss_pred eeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhh--------hcCccccCcccCCccceeEeccCCC-cEEE
Confidence 99999983 46667664 9999998876433211111100 0122222122234899999998887 4444
Q ss_pred EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCC-----
Q 018235 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHN----- 320 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~----- 320 (359)
++.|+.|+-||+.+ ++.. +.|.||+..|.++.--.... -++||+.||++||||+++. +++..+. .|.
T Consensus 132 AgGD~~~y~~dlE~-G~i~---r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 132 AGGDGVIYQVDLED-GRIQ---REYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRP 205 (325)
T ss_pred ecCCeEEEEEEecC-CEEE---EEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecccc-ceeEEeccccChhhcCc
Confidence 55799999999987 6654 78999999999998733333 6899999999999999998 6665552 221
Q ss_pred ---CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 321 ---ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 321 ---~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|-+++ -+..+++++. ...+.+|..+..+
T Consensus 206 ~~g~wigala--~~edWlvCGg-----Gp~lslwhLrsse 238 (325)
T KOG0649|consen 206 DWGKWIGALA--VNEDWLVCGG-----GPKLSLWHLRSSE 238 (325)
T ss_pred ccCceeEEEe--ccCceEEecC-----CCceeEEeccCCC
Confidence 2233333 3455665553 3457788876644
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-14 Score=134.71 Aligned_cols=168 Identities=16% Similarity=0.218 Sum_probs=135.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCC-----CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADT-----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++++|.-.|.+++.+|.+ +++||++.. ..|++|+... ...+..+.+|.-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 5678999999999999999 899998754 4578999887 566678999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-Cc
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SA 312 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~ 312 (359)
.|+|||+++ +|++.+.|+++.+|.................|+..|.++.|+|++. .|||+|.|++|++|-..... +.
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999999 9999999999999988553332222233667999999999999998 79999999999999877651 22
Q ss_pred eE--EeecCCCCEEEEEEcCC-----CCeEEEEeeecccceEEEEEeCc
Q 018235 313 LT--SFKAHNADVNVISWNRC-----WLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 313 ~~--~~~~h~~~V~~i~~s~~-----~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+. ....+...|+.++|.|- +..++.+++ .+.|.+|...
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle----~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE----KGEIVLWRRK 699 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEec----ccEEEEEecc
Confidence 22 23568889999999873 235677776 6778888744
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-15 Score=135.97 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=132.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l 235 (359)
++..+.+|+|+||++.|+.+| .++++|++|-.+.|||... .++++ +-.||...|+++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSV 99 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEE
Confidence 345677999999999999999 8999999999999999876 35554 447999999999
Q ss_pred EeCCCCCC-eEEEEcCCCcEEEEecCCCC------cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 236 DWNPITTG-RLVTGDCNSCIYLWEPASDA------TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 236 ~~sp~~~~-~l~sgs~dg~I~lwd~~~~~------~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.|-|.... +++||+.|..|+++|+.... ......+.+..|...|-.|+-.|.++++|.+|+.||+|+-+|+|.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99886433 78999999999999997421 122223556789999999999999999999999999999999998
Q ss_pred CCCceEEe-------ecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 309 GKSALTSF-------KAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 309 ~~~~~~~~-------~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+-... .-+ --...|+..||....++.-..+ +-..+++|.+
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs---dpfarLYD~R 231 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS---DPFARLYDRR 231 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC---Cchhhhhhhh
Confidence 52111111 111 1245788999987655443332 7777888744
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=129.17 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=135.8
Q ss_pred EecCCCceeeEEEeCCCC-cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 161 KVAHQGCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
...|.+.|++++|+|..+ .++|+|..-|+|-+||+..+.. ...-+..|..|..+|.+|.|+|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEecC
Confidence 346899999999999886 8999999999999999964211 1344678899999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.+..++++.|.||+|++-|+... .... ...+........+++|+.... .++.+..=|...+||+|+.+.....+.-|
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~-i~e~-v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGN-ISEE-VLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred CChhheeeeccCceeeeeeecch-hhHH-HhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhh
Confidence 99989999999999999999762 2110 111222445678889988888 44455555599999999985556667778
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
...|++|++||...+++.+... |.+.+|||.+.
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~---D~T~kIWD~R~ 354 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASL---DQTAKIWDLRQ 354 (498)
T ss_pred hcccceeecCCCCchheeeccc---Ccceeeeehhh
Confidence 8899999999999877766554 99999999875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=118.96 Aligned_cols=165 Identities=14% Similarity=0.168 Sum_probs=120.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...-...+.+|+| .++|+++-.-.|++|..-... ++.......++.++||...|.+++||++.+ +
T Consensus 228 q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~k-------------dG~fqev~rvf~LkGH~saV~~~aFsn~S~-r 292 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTK-------------DGTFQEVKRVFSLKGHQSAVLAAAFSNSST-R 292 (420)
T ss_pred cccccceeeCCCC-cEEEEecCCCCceEEEEEecc-------------CcchhhhhhhheeccchhheeeeeeCCCcc-e
Confidence 3445567899999 889999999999999865411 001113456789999999999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCC------cce-ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 245 LVTGDCNSCIYLWEPASDA------TWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~------~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
++|.+.||+++|||+.-.- ..+ .-..++....+.-..+..+|.+. +||.. ...+|+++..+.+ +..-.+
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s-~gs~l~~~~se~g-~~~~~~e 369 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVS-FGSDLKVFASEDG-KDYPELE 369 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEee-cCCceEEEEcccC-ccchhHH
Confidence 9999999999999986321 111 01122333334444799999998 66543 4467999999997 444444
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..|...|.+|+|+++|++++... +..++++.
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-----dr~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-----DRYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-----ceeeeeec
Confidence 78999999999999999988664 55677664
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=132.43 Aligned_cols=180 Identities=18% Similarity=0.330 Sum_probs=137.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+..++..|..+|..+.|.|.. ..|++++.+|.+.+|++..... . .....+|+.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~---s----------~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK---S----------AEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCC---c----------cccceeeeEEEecccCceEEEE
Confidence 335778899999999999988 5889999999999999944100 0 0013689999999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCC------CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASD------ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
..+.+. .++||+.||+|+.|++... ..+.+-...+.||+..|+.+.+|+... .|++|+.||++|+|.....
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~- 428 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEE- 428 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCc-
Confidence 999998 9999999999999965421 122233467889999999999999988 8999999999999987654
Q ss_pred CceEEe---e---------------c----------------------------------CCCCEEEEEEcCCCCeEEEE
Q 018235 311 SALTSF---K---------------A----------------------------------HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 311 ~~~~~~---~---------------~----------------------------------h~~~V~~i~~s~~~~~l~~~ 338 (359)
.+ +++ . + ....++-+.++|.+.+.+..
T Consensus 429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~ 507 (577)
T KOG0642|consen 429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA 507 (577)
T ss_pred Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence 11 000 0 0 01235667777777766666
Q ss_pred eeecccceEEEEEeCcCCcc
Q 018235 339 LEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g~v 358 (359)
.. ++.|+++|..+|.+
T Consensus 508 he----d~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 508 HE----DRSIRFFDNKTGKI 523 (577)
T ss_pred cc----CCceeccccccccc
Confidence 55 88899998887764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-13 Score=121.87 Aligned_cols=183 Identities=18% Similarity=0.238 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccccc---------CC--------CCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG---------QG--------APQV 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~---------~~--------~~~~ 216 (359)
...+..+...|.|.|.++....+| .+.||+.|..|..||-.- +.......... .. .+..
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y--~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNY--RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccc--cccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 344445555999999999999998 455599999999999322 11111111000 00 0000
Q ss_pred ----CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE
Q 018235 217 ----SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 217 ----~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
-......+..+|..+.+.++-+|..+ +|+|++.|+.++||+ ...-.|. + --..++.++.|+|.+ ++
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt---~---~~~d~~~~~~fhpsg--~v 421 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT---K---IIEDPAECADFHPSG--VV 421 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE---E---EecCceeEeeccCcc--eE
Confidence 12233345678999999999999998 999999999999999 2212222 1 134688999999999 89
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.|...|...+.|+.+ +.+.++...+.++++++|+|+|.+++.+.. |+.|.|+.++.+
T Consensus 422 a~Gt~~G~w~V~d~e~--~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~----d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTET--QDLVTIHTDNEQLSVVRYSPDGAFLAVGSH----DNHIYIYRVSAN 479 (626)
T ss_pred EEeeccceEEEEeccc--ceeEEEEecCCceEEEEEcCCCCEEEEecC----CCeEEEEEECCC
Confidence 9999999999999998 455566555999999999999999999877 889999876653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-13 Score=125.07 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=132.3
Q ss_pred CCeEEEEEecCC-CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
...++..+.++. +.|..++|++.+ .+.+.+.+|.|.-||+.. .++...+......|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 344444444554 789999999655 677788999999999998 68888888888899
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
++++.+|.+. .++.|+.||.+..++... +... -.+.|...++.|.+|+|+|++. .+++|+.||.|++||...+ ..
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p-~~I~-~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~-~t 188 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGP-DKIT-YKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSG-QT 188 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCC-ceEE-EEeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCC-ce
Confidence 9999999998 999999999777777654 3322 2245666789999999999998 8999999999999999988 43
Q ss_pred eEEe-------e-cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 LTSF-------K-AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 ~~~~-------~-~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+ . ....-|+++.|=.++.++..+. -+.+++||...|+.
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-----~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-----AGTVTFWDSIFGTL 237 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecCcEEEecC-----CceEEEEcccCcch
Confidence 3311 1 1344578888887776655553 57899999988763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=131.36 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=125.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
..+....+|.+.|.+-||+|+| .-+.|.++||.|+||.-...+ ..++.....+|+|+
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML----------------------RStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML----------------------RSTVVQNEESIRCA 151 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH----------------------HHHHhhcCceeEEE
Confidence 3445556899999999999999 778899999999999876532 22344445689999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|.|+.+..+.+.+ +.+.|=-+....+. ....+|.+-|.++.|+|... ++++|+.|-..+|||... ..+..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~----i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G--~~Lf~ 222 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKI----IRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG--ANLFT 222 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccce----eEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC--ccccc
Confidence 99999985555544 34444344332222 35678999999999999998 999999999999999875 57777
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
-.+|.-+|++++|+|+..+++|+..+ +++=.++.|.
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S~nt------~R~~~p~~GS 258 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWSYNT------ARFSSPRVGS 258 (737)
T ss_pred CChhccceeeeeeccccceeeeeeee------eeecCCCccc
Confidence 78899999999999997777777543 5554555554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=126.39 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=119.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~ 244 (359)
..|.-++|+|....++.+++++|.|.+||+.. ..|++. ...|..+..+++|+|..+-+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g---------------------~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---------------------MSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccC---------------------CCcccchhhhccCCcCcceecCCccce
Confidence 45568899999889999999999999999998 455544 45799999999999999989
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++.+.|..|.+||++.. ... ..+ ....+...|+|+++|. +|+.|...|.|..||+|..+.|+..+.+|...|+
T Consensus 224 ~vsVG~Dkki~~yD~~s~-~s~---~~l-~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQ-AST---DRL-TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred EEEecccceEEEeecccc-ccc---cee-eecCCcceeeecCCce-EEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 999999999999999862 211 122 2456788899999999 9999999999999999998889999999999999
Q ss_pred EEEEcCCC
Q 018235 325 VISWNRCW 332 (359)
Q Consensus 325 ~i~~s~~~ 332 (359)
+|+|-|..
T Consensus 298 ~vafq~s~ 305 (673)
T KOG4378|consen 298 RVAFQPSP 305 (673)
T ss_pred EEEeeecc
Confidence 99998865
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=134.64 Aligned_cols=161 Identities=22% Similarity=0.350 Sum_probs=120.6
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEE
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~ 255 (359)
...++||.+.++|.|.++|.....-.+ ....+..+..|...|+.+.|-| +..+|++++.|.+|+
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIR 125 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEccCCceee
Confidence 345899999999999999987732111 1223456778999999999999 555999999999999
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------------------c----
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-------------------A---- 312 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-------------------~---- 312 (359)
+||+.+ +... -...+.||+.+|.+++|+|.++.+|++|+.||.|.|||+|.... +
T Consensus 126 ~Wdvk~-s~l~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 126 PWDVKT-SRLV-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeecc-ceee-cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 999987 4433 12358899999999999999999999999999999999986520 0
Q ss_pred ---eEEeecCCCCEEE---EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 ---LTSFKAHNADVNV---ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ---~~~~~~h~~~V~~---i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+....+|...|.+ +.+..|...|+...+ .|..|++||+++..
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNY 251 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccc
Confidence 0111234444544 445556666666554 38999999998753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=118.28 Aligned_cols=162 Identities=8% Similarity=0.017 Sum_probs=110.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+...+..++|+|++ .++++++.++ .+.+||... ......+.. .....+++|+|++.
T Consensus 113 ~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 113 VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT---------------------YEIVDNVLV-DQRPRFAEFTADGK 169 (300)
T ss_pred CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC---------------------CeEEEEEEc-CCCccEEEECCCCC
Confidence 34456889999999 6676666654 567788765 222222211 22346799999998
Q ss_pred CeE-EEEcCCCcEEEEecCCCCcceecCccccC-----CC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 243 GRL-VTGDCNSCIYLWEPASDATWNVDPNPFIG-----HS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 243 ~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-----h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+| +++..++.|++||+.+ ++.. ..+.. +. .....++|+|++..++++.+.++.|.+||++++ +.+.
T Consensus 170 -~l~~~~~~~~~v~i~d~~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~ 243 (300)
T TIGR03866 170 -ELWVSSEIGGTVSVIDVAT-RKVI---KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLD 243 (300)
T ss_pred -EEEEEcCCCCEEEEEEcCc-ceee---eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEE
Confidence 55 5666799999999987 3322 11111 11 123468899999955666677788999999876 4443
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+ .+...+.+++|+|++..|+.+.. .++.|.+||..++++
T Consensus 244 ~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 244 YL-LVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV 283 (300)
T ss_pred EE-EeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence 33 34557999999999999876643 267899999998874
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.9e-14 Score=123.04 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=117.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC-CCCeEEEEcCCCcEEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-TTGRLVTGDCNSCIYLW 257 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~sgs~dg~I~lw 257 (359)
..+|++..+|.|++||..+ ++.+..|++|...+..+.|... +...+.||+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788888999999999987 6778889999998889988764 55589999999999999
Q ss_pred ecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEe----CCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCC
Q 018235 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCS----VDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRC 331 (359)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s----~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~ 331 (359)
|+|...+.. ...+.+|. .+..+++-.-.+. ++++|. .+-.|.+||.|..++++..+ ..|..+|++|.|+|.
T Consensus 100 D~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESA--RISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhh--heeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 999865543 24455555 3555666554555 888875 57889999999985556555 789999999999998
Q ss_pred CCeEEEEeeecccceEEEEEeCcC
Q 018235 332 WLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 332 ~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..-++.+... |+++.++|+..
T Consensus 177 ~pnlLlSGSv---DGLvnlfD~~~ 197 (376)
T KOG1188|consen 177 DPNLLLSGSV---DGLVNLFDTKK 197 (376)
T ss_pred CCCeEEeecc---cceEEeeecCC
Confidence 8766555443 99999999864
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=120.07 Aligned_cols=169 Identities=15% Similarity=0.269 Sum_probs=133.6
Q ss_pred EEecCCCceeeEEEeCC----CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceE
Q 018235 160 RKVAHQGCVNRIRAMTQ----NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGY 233 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~----~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~ 233 (359)
-...|+.+|..++|++. .+.++||.+. ..|.||....... ...+.++. .|....+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfy 93 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------IRLLQSYADEDHDESFY 93 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------eeeeeeccCCCCCcceE
Confidence 34568899999999853 3578888664 5788998876320 12222222 3556788
Q ss_pred EEEeCCCCC---CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 234 AIDWNPITT---GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 234 ~l~~sp~~~---~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.++|+-+.. -+||.|+.-|.|+|.|+.+ ++.. ..+.+|...|+.|.++|..++++++||.|.+||||++++.
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~---~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~- 168 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCS---KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD- 168 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecch-hhhc---cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-
Confidence 899975432 2899999999999999977 5544 6788999999999999999999999999999999999998
Q ss_pred CceEEe---ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 311 SALTSF---KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 311 ~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++..+ .+|...|.++.|++++.+++...- |..|++|+....
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm----Dhslk~W~l~~~ 213 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM----DHSLKLWRLNVK 213 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCC----cceEEEEecChh
Confidence 777766 689999999999999998876654 999999998743
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=117.23 Aligned_cols=173 Identities=15% Similarity=0.257 Sum_probs=127.2
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC--
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-- 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-- 240 (359)
+|..-|+++.|.+.| ..+|||+.|++|.|||++.... ........+.|.+.|..+.|.+-
T Consensus 11 ~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~-----------------~W~~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG-----------------TWSCTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred CCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC-----------------ceEEeeeEEecCCcEEEEEecCccc
Confidence 789999999999999 8999999999999999866322 23556678899999999999653
Q ss_pred CCCeEEEEcCCCcEEEEecCC------CCcceecCccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCCC--
Q 018235 241 TTGRLVTGDCNSCIYLWEPAS------DATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGKS-- 311 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~~-- 311 (359)
|. .+|+|+.|+++.||.-.. +..|+. ..++....+.|++|+|.|.... .+|+++.||.||||+.-....
T Consensus 73 Gq-vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 73 GQ-VVATCSYDRTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred cc-eEEEEecCCceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 44 899999999999996521 123442 3456677899999999997543 689999999999998765411
Q ss_pred ---ceEEe-------ecCCCCEEEEEEcCC---CCeEEEEeeecc-cceEEEEEeCcC
Q 018235 312 ---ALTSF-------KAHNADVNVISWNRC---WLAVCWHLEVMM-EHFLFMILDCSR 355 (359)
Q Consensus 312 ---~~~~~-------~~h~~~V~~i~~s~~---~~~l~~~~~~~~-~d~~i~iwd~~~ 355 (359)
....+ ..+..+..|++|||. .++|+.+..... .-+.+.||....
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 11112 246778899999974 356666654311 124577776543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=130.51 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=140.2
Q ss_pred EEEecCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCc---ccccccccc---c------------cCCCCCC--
Q 018235 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHL---NALAESETI---V------------GQGAPQV-- 216 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~---~~~~~~~~~---~------------~~~~~~~-- 216 (359)
....+|..+|.|+.|+... ..++|+++.|..|+|||....- ..+..+... + ..+.++.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 3455899999999998643 4799999999999999987632 112111110 0 0111111
Q ss_pred ----CCCCCcEEecCC-----CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC
Q 018235 217 ----SNQSPLVKFGGH-----KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (359)
Q Consensus 217 ----~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (359)
.+......|..| ...+|.|+..|... +++++..|..|+||++.+ ++.....+.-.+|.+..-.|...|.
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCC
Confidence 011112223222 23689999999998 999999999999999987 5544212223347788888999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+. ++|+.+.|+++.++|+-++ .++....+|...|+.+.|.++-+-|+.... |++|-+|....
T Consensus 653 gi-Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsg----DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 GI-YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSG----DGCIFVWKLPL 714 (1080)
T ss_pred cc-EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecC----CceEEEEECch
Confidence 99 9999999999999999998 899999999999999999999998887766 99999998754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=123.93 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=125.8
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWN 238 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s 238 (359)
..+.-.|.|..+.|+.++ ..|..++.+|.|.+||++. ..+++.|....+ .++.++.|
T Consensus 339 ~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~---------------------~~~~~rf~D~G~v~gts~~~S 396 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ---------------------NSCLHRFVDDGSVHGTSLCIS 396 (514)
T ss_pred heeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC---------------------cceEEEEeecCccceeeeeec
Confidence 344568999999999998 5555557789999999998 466666655443 56788889
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCC--CcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~ 314 (359)
+++. +||+|+..|.|.|||.++. +.-..++..+..-+..|++++|+|+.+ +||-|| .+..+|+-.+.+. ....
T Consensus 397 ~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~-TVFs 473 (514)
T KOG2055|consen 397 LNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC-TVFS 473 (514)
T ss_pred CCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce-eeec
Confidence 9998 9999999999999997542 111122345556678999999999999 888887 4677999888764 3333
Q ss_pred Eeec---CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SFKA---HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~~~---h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+.. .-+.|+|++|+|.+.+++.+.. .+.+.+|..+
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe----~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNE----AGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecC----CCceeeEeec
Confidence 3322 2346899999999999999976 7788999764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=117.36 Aligned_cols=223 Identities=9% Similarity=0.081 Sum_probs=145.4
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
.+++++-|-+ .+|++|. .++.|.||++..
T Consensus 26 a~~~~Fs~~G-----------~~lAvGc-----~nG~vvI~D~~T----------------------------------- 54 (405)
T KOG1273|consen 26 AECCQFSRWG-----------DYLAVGC-----ANGRVVIYDFDT----------------------------------- 54 (405)
T ss_pred cceEEeccCc-----------ceeeeec-----cCCcEEEEEccc-----------------------------------
Confidence 4577777654 5888888 567899999841
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc--ccccccccc-----ccCCCCCC-----
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL--NALAESETI-----VGQGAPQV----- 216 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~--~~~~~~~~~-----~~~~~~~~----- 216 (359)
-.....+.+|..+|.+++|+++| +.+.|+|.|..|.+||+.... ..+...... .+...++.
T Consensus 55 ------~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~ 127 (405)
T KOG1273|consen 55 ------FRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIM 127 (405)
T ss_pred ------cchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEe
Confidence 11223455899999999999999 899999999999999998732 111111100 00000000
Q ss_pred CCC-------CCcEEecCCCC------ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC-CCCeEEE
Q 018235 217 SNQ-------SPLVKFGGHKD------EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH-SASVEDL 282 (359)
Q Consensus 217 ~~~-------~~~~~~~~h~~------~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v 282 (359)
... .+.+++-.... .-....|.+.|. ++++|...|.+.+++..+. .++ ..+.-. ...|..+
T Consensus 128 ~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a~t~-e~v---as~rits~~~IK~I 202 (405)
T KOG1273|consen 128 EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDAETL-ECV---ASFRITSVQAIKQI 202 (405)
T ss_pred cCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEecchh-eee---eeeeechheeeeEE
Confidence 000 01111111000 011224677787 9999999999999998773 333 333333 3788899
Q ss_pred EecCCCCCEEEEEeCCCcEEEEECCCCC--------CceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 283 QWSPTEPDVFASCSVDGHIAIWDTRVGK--------SALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~--------~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
-++..+. .|+.-+.|+.||.|+++.-. .+.+.+. ......++++|+.+|.+++.+... .+.+.||.
T Consensus 203 ~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~---aHaLYIWE 278 (405)
T KOG1273|consen 203 IVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR---AHALYIWE 278 (405)
T ss_pred EEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccc---ceeEEEEe
Confidence 9999999 99999999999999987320 1112221 123456788999999999988754 67788998
Q ss_pred CcCCcc
Q 018235 353 CSRGEI 358 (359)
Q Consensus 353 ~~~g~v 358 (359)
.+.|.+
T Consensus 279 ~~~GsL 284 (405)
T KOG1273|consen 279 KSIGSL 284 (405)
T ss_pred cCCcce
Confidence 888764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=113.16 Aligned_cols=154 Identities=14% Similarity=0.277 Sum_probs=106.5
Q ss_pred eEEEeCCCCcEEEEEe---------CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCC
Q 018235 170 RIRAMTQNPHICASWA---------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNP 239 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp 239 (359)
.+.|+|+|..+++... .-|...||.++. ...++..+.- ...+|.+++|+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--------------------~~~~~~~i~l~~~~~I~~~~WsP 69 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--------------------KNIPVESIELKKEGPIHDVAWSP 69 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--------------------CCCccceeeccCCCceEEEEECc
Confidence 4678888865555544 124556666654 2344444433 334799999999
Q ss_pred CCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC---CCcEEEEECCCCCCceE
Q 018235 240 ITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIWDTRVGKSALT 314 (359)
Q Consensus 240 ~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~~~~ 314 (359)
++. .||. |..++.|.+||++ ...+ ..+ +...++.|.|+|.|. +|++++. .|.|.+||++.. +.+.
T Consensus 70 ~g~-~favi~g~~~~~v~lyd~~--~~~i---~~~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~-~~i~ 139 (194)
T PF08662_consen 70 NGN-EFAVIYGSMPAKVTLYDVK--GKKI---FSF--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK-KKIS 139 (194)
T ss_pred CCC-EEEEEEccCCcccEEEcCc--ccEe---Eee--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC-EEee
Confidence 998 6543 5567899999996 2322 223 457788999999999 7777653 467999999976 5554
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
... |. .++.++|+|+|+++++.... .+.++.++||+...
T Consensus 140 ~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 140 TFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 443 33 47899999999999887543 34478899998753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=118.30 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=136.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
...+|+|-+|++++ ..+|.+..+..|.||...... ..++.+++..|...+++++|+|..+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-
Confidence 46799999999999 789999999999999987621 2578899999999999999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC---ceEEeecCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHN 320 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~ 320 (359)
+|++|+.|..-++|....++.|.. .-.+..+...+++|.|+|.+. .||+||.-+.|.||-+..... ..+.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~Wkp-tlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKP-TLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeecc-ceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 999999999999999977677752 233556889999999999998 999999999999998887522 111225678
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.|++++|+|++-+++.+.. |+..+++..
T Consensus 147 Stv~sldWhpnnVLlaaGs~----D~k~rVfSa 175 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGST----DGKCRVFSA 175 (361)
T ss_pred cceeeeeccCCcceeccccc----CcceeEEEE
Confidence 88999999999998888876 777777643
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-12 Score=112.84 Aligned_cols=165 Identities=14% Similarity=0.226 Sum_probs=124.5
Q ss_pred cCCCceeeEEEe-------CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCC---
Q 018235 163 AHQGCVNRIRAM-------TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKD--- 230 (359)
Q Consensus 163 ~H~~~V~~i~~~-------p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~--- 230 (359)
.-.+.|..-.|- |.. .++|+.+.+.-|++||..+ ++...++. .|..
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaft---------------------G~lraSy~~ydh~de~t 159 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFT---------------------GKLRASYRAYDHQDEYT 159 (406)
T ss_pred ccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccc---------------------cccccchhhhhhHHhhh
Confidence 345667766664 333 7899999999999999887 33333333 3444
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceec---CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVD---PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~---~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
..++|+|+|+|+ +|+.|. ..+|+++|+..++. ..+- ...-.+..+.+.+++|||.....+|.++.-.++-|+.-
T Consensus 160 aAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 160 AAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 346899999999 887775 78999999944333 1110 01122347889999999998879999999999888877
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
... .++..+.+|.+.|+.++|.++|..+..+.+. +..|..||++.
T Consensus 238 ~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~WDiR~ 282 (406)
T KOG2919|consen 238 DGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILCWDIRY 282 (406)
T ss_pred CCC-CceeeecccCCCeeeEEeccCcCeecccccC---CCeEEEEeehh
Confidence 766 7888889999999999999999988887764 77799999874
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-12 Score=113.87 Aligned_cols=160 Identities=9% Similarity=0.041 Sum_probs=113.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...+..+.|+|++..++++++.++.|++||+.. .+.+..+..+. .+..+.|+|++..+
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~~l 87 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGKIL 87 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCCEE
Confidence 344778999999855667888899999999876 33344444443 34678999999734
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC-cEEEEECCCCCCceEEeecCCCCE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
+++++.++.|++||+++ ...+ ..+. +...+.+++|+|++. ++++++.++ .+.+||.++. ..+..+. ....+
T Consensus 88 ~~~~~~~~~l~~~d~~~-~~~~---~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~ 159 (300)
T TIGR03866 88 YIANEDDNLVTVIDIET-RKVL---AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRP 159 (300)
T ss_pred EEEcCCCCeEEEEECCC-CeEE---eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCc
Confidence 45556789999999976 3332 2232 234568899999999 788777765 5778898876 4443332 23456
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+++|+|++..++..... ++.+.+|+..+++
T Consensus 160 ~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~ 190 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEI---GGTVSVIDVATRK 190 (300)
T ss_pred cEEEECCCCCEEEEEcCC---CCEEEEEEcCcce
Confidence 789999999988765432 6789999998765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-13 Score=128.00 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=132.5
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.-...|.++.|+|..++++|.|+.+|+|.+||++.....+. ...-.....|..+++++.|-.+..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------s~ls~~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------SGLSALEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------cccccccccCCcCeEEEEEeccCC
Confidence 34789999999999999999999999999999998432210 111123456888999999965433
Q ss_pred -CeEEEEcCCCcEEEEecCCCCc--------------------------------------------c---------eec
Q 018235 243 -GRLVTGDCNSCIYLWEPASDAT--------------------------------------------W---------NVD 268 (359)
Q Consensus 243 -~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------~---------~~~ 268 (359)
.-|+|++.||.|+.|+++.-.. . ...
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 2589999999999998863100 0 000
Q ss_pred ------CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeec
Q 018235 269 ------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVM 342 (359)
Q Consensus 269 ------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~ 342 (359)
...+..|.++|+.+.++|.+..+|++++ |.+++||.......|+..+..+...|.+++|||....+.+..+.
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~- 462 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG- 462 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-
Confidence 1234457789999999999987888887 99999999884337888888888889999999999877777664
Q ss_pred ccceEEEEEeCcC
Q 018235 343 MEHFLFMILDCSR 355 (359)
Q Consensus 343 ~~d~~i~iwd~~~ 355 (359)
++.|.+||...
T Consensus 463 --~G~l~iWDLl~ 473 (555)
T KOG1587|consen 463 --DGNLDIWDLLQ 473 (555)
T ss_pred --CCceehhhhhc
Confidence 88899999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=127.86 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=134.5
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
...-.-.+.+++++|++ ..+|+|..-|+++||++.. ......+..|..+|.+|.+|.-
T Consensus 455 ~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~---------------------l~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE---------------------LEYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred hcCcccceEEEEECCCc-ceecccCccCceEEEEehh---------------------hhhhhheecccceeEEEeecCc
Confidence 34556789999999999 8999999999999999987 4566778899999999999853
Q ss_pred --CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC-----------------------------------------
Q 018235 241 --TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA----------------------------------------- 277 (359)
Q Consensus 241 --~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~----------------------------------------- 277 (359)
+..+||+++.|..|++||....-.+ .+++.+|.+
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDL---VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccch---hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 2238999999999999998642111 133333433
Q ss_pred --------CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe---ecCCCCEEEEEEcCCCCeEEEEeeecccce
Q 018235 278 --------SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---KAHNADVNVISWNRCWLAVCWHLEVMMEHF 346 (359)
Q Consensus 278 --------~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~ 346 (359)
.++++...|+.. ++++++.|+.|+|||+.++ +....| ..|.+..-.+...|.|-+++..+. |.
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs----dk 663 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS----DK 663 (1080)
T ss_pred cccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeec----CC
Confidence 445566677777 8999999999999999998 666677 457777888899999999999998 99
Q ss_pred EEEEEeCcCCcc
Q 018235 347 LFMILDCSRGEI 358 (359)
Q Consensus 347 ~i~iwd~~~g~v 358 (359)
.|.++|..+|+.
T Consensus 664 tl~~~Df~sgEc 675 (1080)
T KOG1408|consen 664 TLCFVDFVSGEC 675 (1080)
T ss_pred ceEEEEeccchh
Confidence 999999988874
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=120.91 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=134.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 232 (359)
.|.....+.+|.|+||+|.|+..+ .++|+|++|-.+++|.+....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 556666778999999999999987 899999999999999987622111 2366665543 45799
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
++|+|+.-+. .|.+|..+++|.+.|+.+.....+ ..-....+.|+.+..+|... +|++.+.+|.|.|||.|..+.+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeeee--ecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999998887 999999999999999987433221 11122345899999999966 9999999999999999987434
Q ss_pred eEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 313 LTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..+ .........+.|+|..+.|+..... -+-+.+||.+..
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~---~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSE---TGGPNVFDRRMQ 227 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccc---cCCCCceeeccc
Confidence 3332 3344567888999988876655432 233667887653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-12 Score=122.18 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=133.1
Q ss_pred EEEec-CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEE
Q 018235 159 LRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAID 236 (359)
Q Consensus 159 ~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~ 236 (359)
.+++. -+.+|.+++++.+. +.+|.+-.+|.|-||++.. ..-....+.++.+ .|.+|+
T Consensus 18 crf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred EEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEE
Confidence 34444 35899999999988 7799999999999999987 2444556667665 899999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce--E
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL--T 314 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~--~ 314 (359)
|++.+ +|.|.+.+|.|.-||+.+ .+.. ..+....+.|++++.+|.+. .++.|+.||.+.+++.... ... .
T Consensus 77 W~e~~--RLFS~g~sg~i~EwDl~~-lk~~---~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~-~I~~~r 148 (691)
T KOG2048|consen 77 WAEGG--RLFSSGLSGSITEWDLHT-LKQK---YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPD-KITYKR 148 (691)
T ss_pred EccCC--eEEeecCCceEEEEeccc-Ccee---EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCc-eEEEEe
Confidence 99554 799999999999999987 4433 44566778999999999998 9999999997777777664 211 1
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+....+.|.+++|+|++.-++.++. |+.|++||+..+.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~----Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSI----DGVIRIWDVKSGQ 187 (691)
T ss_pred ecccccceEEEEEecCCccEEEeccc----CceEEEEEcCCCc
Confidence 23455789999999999998888887 9999999998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-11 Score=115.36 Aligned_cols=170 Identities=25% Similarity=0.395 Sum_probs=135.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
........|...|..+.|+|.+ ..+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 4556778999999999999999 47777775 99999999986 4667788889999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCc-cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++|+|.+...+++++.|+.|++||... +... . .+.+|...+ -..|+|++. ++++++.|+.+++|+++.....+
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLST-GKLL---RSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCC-CcEE---eeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEE
Confidence 999988863555559999999998874 4433 3 577788775 448999995 88899999999999999873324
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..|...|.++.|+|++..++.+.. ++.+++|+.....
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 317 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSS----DGTVRLWDLETGK 317 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeC----CCcEEEEEcCCCc
Confidence 444678899999999998887777433 5669999877654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=112.11 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=120.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-...|.+++|+|.+..++|+ +-||.+++|++... .....| .|..++.+.+|.+..
T Consensus 12 P~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~~---------------------~l~~~~-~~~~plL~c~F~d~~-- 66 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPAN---------------------SLKLKF-KHGAPLLDCAFADES-- 66 (323)
T ss_pred ChhceeeEEEcCcCCcEEEE-eccCcEEEEeccch---------------------hhhhhe-ecCCceeeeeccCCc--
Confidence 46789999999988555554 69999999999872 222223 578899999999854
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.+++|+.||.|+++|++++.. ..+..|...|.+|.+++-.. .+++||-|++|++||.|.. .+...+..- ..|
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~-~~~~~~d~~-kkV 138 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNK-VVVGTFDQG-KKV 138 (323)
T ss_pred eEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccc-ccccccccC-ceE
Confidence 699999999999999988433 34667999999999998766 9999999999999999974 444455433 368
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+++.+ +..|+.++. +..+.+||.+...
T Consensus 139 y~~~v~--g~~LvVg~~----~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 139 YCMDVS--GNRLVVGTS----DRKVLIYDLRNLD 166 (323)
T ss_pred EEEecc--CCEEEEeec----CceEEEEEccccc
Confidence 887766 566676665 7789999988653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=112.95 Aligned_cols=172 Identities=15% Similarity=0.223 Sum_probs=129.2
Q ss_pred cCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+-.|.+.+.++.... ..+++.|-++|.|.+||+......+..+. ..+...-...|..++.++++.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------SSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----------ccccccchhhccCcceeeeechh
Confidence 455778887753322 24677788999999999998533222111 13445566789999999999877
Q ss_pred CCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
-. .=++|+.+..+..|.++.. +.... .....--...|..+..-|+++ +|||++-|+.||||.-|+. .++..++-|
T Consensus 217 ~~-rGisgga~dkl~~~Sl~~s~gslq~-~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl-~pLAVLkyH 292 (323)
T KOG0322|consen 217 CD-RGISGGADDKLVMYSLNHSTGSLQI-RKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL-NPLAVLKYH 292 (323)
T ss_pred hc-CCcCCCccccceeeeeccccCcccc-cceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC-Cchhhhhhh
Confidence 65 5567777778889988753 22211 111222335688899999999 9999999999999999998 888888999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+.|++++|+|+..+++.+.. |..|.+|+.
T Consensus 293 sagvn~vAfspd~~lmAaask----D~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASK----DARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccC----CceEEeeec
Confidence 999999999999888887765 999999975
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-13 Score=123.97 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=127.3
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..-.|.|.++.|+|..+.+|++ + ...|+|||+.. ...+..+......+..|+.+|.|
T Consensus 563 ~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~k---------------------qelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSK---------------------QELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred hhcCCceeEEEecCCCceEEEE-e-ccceEEEehhH---------------------HHHHHHHhcCCeeeeeeeecCCC
Confidence 3457899999999998655543 3 46899999987 34444444445678899999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--------Cce
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--------SAL 313 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--------~~~ 313 (359)
. .|+.|+.|+.++.+|+.-+.++. +.+..|...|++|+||+.-+ +||+|+.||++.|+.-+-.. -++
T Consensus 620 D-nli~gs~d~k~~WfDldlsskPy---k~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 620 D-NLILGSYDKKMCWFDLDLSSKPY---KTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred C-eEEEecCCCeeEEEEcccCcchh---HHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 8 88889999999999998755554 77888999999999999999 99999999999999654321 145
Q ss_pred EEeecCCCC----EEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 314 TSFKAHNAD----VNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 314 ~~~~~h~~~----V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
..+.+|... |....|+|...+|..+.+ +++|++|
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA----d~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA----DGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCC----CceEEee
Confidence 566788654 888899999999998877 8999998
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-11 Score=104.82 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=135.5
Q ss_pred ccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEee-ccCCcccC
Q 018235 42 DKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVS-NISGKRRE 120 (359)
Q Consensus 42 ~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~-~l~~~~~~ 120 (359)
|+..++..+.+|...|..+.++...-|..++..-++ ++|+-. .|.|+||.+. |+...
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-------------riVvvl------~~~I~VytF~~n~k~l--- 127 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-------------RIVVVL------ENKIYVYTFPDNPKLL--- 127 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC-------------eEEEEe------cCeEEEEEcCCChhhe---
Confidence 457888899999999999999999999999998887 344434 6789999985 22111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEE-EeCCCcEEEEECCCCc
Q 018235 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHL 199 (359)
Q Consensus 121 ~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~ 199 (359)
.....+..+..+.++.-.... .++|. |...|.|+|-|+...
T Consensus 128 ------------------------------------~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~- 169 (346)
T KOG2111|consen 128 ------------------------------------HVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLAST- 169 (346)
T ss_pred ------------------------------------eeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhc-
Confidence 112222222223222222222 34443 557799999999872
Q ss_pred cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEecCCCCcceecCccccC--CC
Q 018235 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIG--HS 276 (359)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~--h~ 276 (359)
...+-..+..|...|.+++.+.+|. ++||+|..|+ |+|||..+ +..+. .+.. ..
T Consensus 170 ------------------~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~---E~RRG~d~ 226 (346)
T KOG2111|consen 170 ------------------KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQ---ELRRGVDR 226 (346)
T ss_pred ------------------CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEee---eeecCCch
Confidence 1224577889999999999999998 9999999998 79999988 55552 3322 44
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..|++++|||+.. +||..|..|+|+|+.++..
T Consensus 227 A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 ADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred heEEEEEeCCCcc-EEEEEcCCCeEEEEEeecC
Confidence 7899999999999 9999999999999998864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-12 Score=121.54 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=139.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..++.+++.++...|+++.-+|-- .++|.|..+|+|.|+++.. .+.+.+|+...+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 667889999999999999999977 7999999999999999998 677888976678999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
+++|.-+|+..||+|+..|.+.+||+.. .+.. ......|.++|..+.|-|..+ ++++.+.|.++++|=..++.
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~-kkl~--~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEK-KKLI--NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCC-Ceee--eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcc
Confidence 9999999998999999999999999976 3332 244557999999999999998 99999999999998655542
Q ss_pred CceEEeecCCCCEEEEEEc-CCCCeEEEEeeecccceEEEEEeC
Q 018235 311 SALTSFKAHNADVNVISWN-RCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s-~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
..++.-.+|..+..||.|- .++.+++.... |.+++.+.+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~----Drt~r~fs~ 364 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ----DRTLRSFSV 364 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEeccc----Ccchhhhhh
Confidence 2334448999999999998 45555555443 666665543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=115.55 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=115.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..++|+.++ ..+|+|+.||+++||+... ...+.....|..+|.+|+|||++. .|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678899988 7999999999999999876 456667778999999999999999 99999
Q ss_pred cCCCcEEEEecCCCCccee--------------------------------------------------cCccccCCCCC
Q 018235 249 DCNSCIYLWEPASDATWNV--------------------------------------------------DPNPFIGHSAS 278 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~--------------------------------------------------~~~~~~~h~~~ 278 (359)
+.| ..+||+.+++..+.. ..+........
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 999 899999987511000 00000011247
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEE
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~ 337 (359)
|.+++.+++|+ ++|.|+.||.|.|++.... +.++.+ .+|...|+.+.|+|+.++++.
T Consensus 284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ceeEEEcCCCc-EEEEeccCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 88999999999 9999999999999999987 455444 799999999999999887765
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-11 Score=105.63 Aligned_cols=161 Identities=13% Similarity=0.190 Sum_probs=120.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC---CCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG---HKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l 235 (359)
+.-+-....|.+|+++.+. +++. -. ..|+|||+.. .+++.++.. +...+.++
T Consensus 81 ICe~~fpt~IL~VrmNr~R--LvV~-Le-e~IyIydI~~---------------------MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKR--LVVC-LE-ESIYIYDIKD---------------------MKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred EEEEecCCceEEEEEccce--EEEE-Ec-ccEEEEeccc---------------------ceeehhhhccCCCccceEee
Confidence 3444567889999998754 4443 33 3499999998 455555533 34456777
Q ss_pred EeCCCCCCeEEEE--cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCc
Q 018235 236 DWNPITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSA 312 (359)
Q Consensus 236 ~~sp~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~ 312 (359)
+.|+.+. +||-- ...|.|.|||..+ -+.. ..+..|++.+-+++|+|+|. +|||+|+.|+ ||++.+..+ +.
T Consensus 136 S~n~~n~-ylAyp~s~t~GdV~l~d~~n-l~~v---~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G-~k 208 (391)
T KOG2110|consen 136 SPNNANC-YLAYPGSTTSGDVVLFDTIN-LQPV---NTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG-QK 208 (391)
T ss_pred ccCCCCc-eEEecCCCCCceEEEEEccc-ceee---eEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc-cE
Confidence 7777766 66542 3368899999977 3333 56789999999999999999 9999999998 899999988 66
Q ss_pred eEEeecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 313 LTSFKAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 313 ~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..+..- ...|.+|+|+|++++|+.... -.+|.++....
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~----TeTVHiFKL~~ 249 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSN----TETVHIFKLEK 249 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecC----CCeEEEEEecc
Confidence 7777432 346889999999999988876 56677776543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-11 Score=109.03 Aligned_cols=166 Identities=11% Similarity=0.087 Sum_probs=126.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~ 237 (359)
..+.--..+|.+++|.|+|...+++++.....+.||+... +..++....++.. .+.....
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchhheeEe
Confidence 3333446799999999999658999999999999999762 1223333444443 5567788
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|++++ +|+..+..|.|+|.-..+ +.++ ..+. -.+.|.+++|+.++. .|++++.+|.|.+||++.. .++..+.
T Consensus 312 Shd~~-fia~~G~~G~I~lLhakT-~eli---~s~K-ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~-~~~~rf~ 383 (514)
T KOG2055|consen 312 SHDSN-FIAIAGNNGHIHLLHAKT-KELI---TSFK-IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN-SCLHRFV 383 (514)
T ss_pred cCCCC-eEEEcccCceEEeehhhh-hhhh---heee-eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc-ceEEEEe
Confidence 99998 999999999999988766 5554 3332 457899999999998 7777888899999999997 7777774
Q ss_pred cCCC-CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AHNA-DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h~~-~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
...+ .-++++.++++.+++++.. -+.+.||+..+
T Consensus 384 D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s 418 (514)
T KOG2055|consen 384 DDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNS 418 (514)
T ss_pred ecCccceeeeeecCCCceEEeccC----cceEEEeccch
Confidence 2221 2366778899999998876 78899998543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-13 Score=120.10 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=129.0
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
+-.+++.. ...|+++.|.|.. .++++++..|.++.-|+.. ++.+..+..-.+.+..|
T Consensus 201 tElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~---------------------GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 201 TELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVST---------------------GKLVASIRTGAGRTDVM 257 (545)
T ss_pred cEEeehhh-cCchhhhcccchh-heeeecccCCceEEEeech---------------------hhhhHHHHccCCccchh
Confidence 33344433 4689999999988 8999999999999999987 67777777777788899
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
.-+|.+. .+-+|...|+|.+|.+.. ..++ ..+..|.++|.+|++.|.|. ++||.+.|+.|+|||+|+. ..+.+
T Consensus 258 ~qNP~Na-Vih~GhsnGtVSlWSP~s-kePL---vKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~-~ql~t 330 (545)
T KOG1272|consen 258 KQNPYNA-VIHLGHSNGTVSLWSPNS-KEPL---VKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF-YQLHT 330 (545)
T ss_pred hcCCccc-eEEEcCCCceEEecCCCC-cchH---HHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc-cccce
Confidence 9999998 999999999999999977 4554 45678999999999999999 9999999999999999998 45555
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+.. ..+.+.+++|..|-+.+.- ...+.||.
T Consensus 331 ~~t-p~~a~~ls~SqkglLA~~~------G~~v~iw~ 360 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQKGLLALSY------GDHVQIWK 360 (545)
T ss_pred eec-CCCccccccccccceeeec------CCeeeeeh
Confidence 543 3456778888766543322 34588885
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=120.24 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=127.4
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc--eEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE--GYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~ 241 (359)
-...|+.+.....+.+++|.|..||.|++||.+... ...++...+.|+.. |..+.+.+.|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------------------~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------------------PDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCC------------------ccccceeecccCCcccceeEEeecCC
Confidence 456677776655445899999999999999998732 23567788889987 9999999988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCC--C-CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS--A-SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~--~-~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
-+.|+||+.+|.|++||+|...... ......|. + .++++..|+..+ ++|+|+. +.|+||++... .+..+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~ 1342 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKET--FLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY 1342 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccc--cceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc
Confidence 8789999999999999999732111 11222333 3 589999999998 9999999 99999999864 22222
Q ss_pred -----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 -----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 -----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
......+.|++|+|....++.+.. |..|.|+....+.+
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~----Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSA----DSTVSIYSCEKPRL 1385 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccC----CceEEEeecCCcCC
Confidence 122345799999999999988865 89999998766543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=114.78 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
.+.+.....+|.+-|.+++|.|.. ..+++||+.|..|++||+..........+ ...+.+.+..|...|
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----------~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----------MEETTRCWSCHTDRV 150 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------ccchhhhhhhhhhhh
Confidence 344445667999999999999954 47899999999999999986321111111 245667788999999
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
--|+-.|.++..+.+++.||+|+-+|+|.+..+.. ....+...--...++..+|..+++||.|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99999999988999999999999999998433220 011122222355789999999999999999999999995
Q ss_pred CCCCC-----------------ceEEe-ecCC-----------CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKS-----------------ALTSF-KAHN-----------ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~-----------------~~~~~-~~h~-----------~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...+ ++..+ .+|- ..++-+.|||+|.-|+.... .-.+.+++++.++
T Consensus 231 Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~----gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG----GEHVYLFDVNEDK 306 (758)
T ss_pred hhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC----CeEEEEEeecCCC
Confidence 53211 12222 2332 11456789999987776654 3457777776543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=116.94 Aligned_cols=174 Identities=14% Similarity=0.230 Sum_probs=125.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|.-.|++++|+|++ .+|++.+.|.++.+|........ .......+.|+.-|++.+|+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~-----------------e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD-----------------EFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred heecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch-----------------hhhhccccccceEEEEcccC
Confidence 3567999999999999999 89999999999999998652111 01122367899999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCCCCC----EEEEEeCCCcEEEEECCC-CC--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPD----VFASCSVDGHIAIWDTRV-GK-- 310 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~----~las~s~Dg~I~iwD~r~-~~-- 310 (359)
|+.. +|+|+|.|.+|++|...... +.+. ......+...|++++|.|.-.+ +++.|-..|.|.||.... ..
T Consensus 628 pde~-~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~ 705 (764)
T KOG1063|consen 628 PDEK-YFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV 705 (764)
T ss_pred cccc-eeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence 9998 79999999999999887631 2221 1134458899999999885332 889999999999998541 10
Q ss_pred ---C-----ceEEeecCCCCEEEEEEcCCC--------CeEEEEeeecccceEEEEEeCc
Q 018235 311 ---S-----ALTSFKAHNADVNVISWNRCW--------LAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 311 ---~-----~~~~~~~h~~~V~~i~~s~~~--------~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
. .+....+|.+.|+.+.|.|.. ..+-. ..++.|..+++++..
T Consensus 706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l--a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL--AVGGDDESVRIFNVD 763 (764)
T ss_pred cceeeeeccccccccChHHhhheeEeccccccccccccceeEE--eeecccceeEEeecc
Confidence 0 111124677889999999862 22211 122348889998753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=122.40 Aligned_cols=147 Identities=16% Similarity=0.369 Sum_probs=119.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
+|+.++|-|+|..++..++ ..+.|||... +..+.++++|.+.|++++|+.+|. ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 9999999999966665543 6899999987 677889999999999999999999 999
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
||+.|..|.+|...-.+.. -..|...|.|+.|+|-.. .++||+-. -.-+|..... .+... .....|++.
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK--~V~K~-kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK--SVSKH-KSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh--hHHhh-hhheeEEEe
Confidence 9999999999998764432 235999999999999987 89999864 3567876653 22222 234578999
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEe
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+|+.+|.+++.+.. +++|.|-+
T Consensus 139 sWtnDGqylalG~~----nGTIsiRN 160 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMF----NGTISIRN 160 (1081)
T ss_pred eecCCCcEEEEecc----CceEEeec
Confidence 99999999999987 77777654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-13 Score=123.00 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=103.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.++..-...|..++.+|.|.+ ++.++.|+.+..||+.. ..+|..++..|...+.+++++
T Consensus 601 KkL~tg~kwiS~msihp~GDn-li~gs~d~k~~WfDldl--------------------sskPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDN-LILGSYDKKMCWFDLDL--------------------SSKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCe-EEEecCCCeeEEEEccc--------------------CcchhHHhhhhhhhhhhhhhc
Confidence 344455667888999999854 55579999999999988 468999999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEe------cCCCCcceecCccccCCCCC----eEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 239 PITTGRLVTGDCNSCIYLWE------PASDATWNVDPNPFIGHSAS----VEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd------~~~~~~~~~~~~~~~~h~~~----V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
+.-+ +|+||+.||++.|+- +.. ...++++..+.+|... |.++.|||..+ .|.|++.||+|++|
T Consensus 660 ~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~q-npliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 660 KRYP-LFASGSDDGTVIVFHGMVYNDLLQ-NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF 732 (733)
T ss_pred cccc-eeeeecCCCcEEEEeeeeehhhhc-CCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence 9998 999999999999883 322 4457778889999876 99999999999 99999999999998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.9e-11 Score=100.80 Aligned_cols=114 Identities=19% Similarity=0.415 Sum_probs=83.6
Q ss_pred cCCCceeeEEEeCCCCcEEE-EEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICA-SWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~la-t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
...++|..++|+|++..+++ +|...+.|.|||+.. .++..+. ...+..+.|||.|
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------------------~~i~~~~--~~~~n~i~wsP~G 112 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------------------KKIFSFG--TQPRNTISWSPDG 112 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------------------cEeEeec--CCCceEEEECCCC
Confidence 34678999999999955433 345678999999964 4555553 4567899999999
Q ss_pred CCeEEEEcC---CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe------CCCcEEEEECCC
Q 018235 242 TGRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRV 308 (359)
Q Consensus 242 ~~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~ 308 (359)
+ +|++|+. .|.|.+||.++ .+.+ ..+ +...+..++|+|+|+ +|+++. .|..++||+...
T Consensus 113 ~-~l~~~g~~n~~G~l~~wd~~~-~~~i---~~~--~~~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 113 R-FLVLAGFGNLNGDLEFWDVRK-KKKI---STF--EHSDATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-EEEEEEccCCCcEEEEEECCC-CEEe---ecc--ccCcEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence 9 8887754 46799999986 3333 222 234578999999999 666654 378899999864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=114.20 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=99.6
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-.++||.++|+|++ ..+|+.+.||.++|||+.. ...+..++..-+...|++|||+++
T Consensus 289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt---------------------~eLlg~mkSYFGGLLCvcWSPDGK- 345 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT---------------------QELLGVMKSYFGGLLCVCWSPDGK- 345 (636)
T ss_pred ccccccceeEcCCC-ceEEEEecCceEEEeeccH---------------------HHHHHHHHhhccceEEEEEcCCcc-
Confidence 45799999999999 8999999999999999988 345556666667889999999999
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC------------------------------------
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------------------------------ 287 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------------------------------ 287 (359)
+|++|+.|-.|.||.+.. .+.+ ..-++|++.|..|+|.|-
T Consensus 346 yIvtGGEDDLVtVwSf~e-rRVV---ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~ 421 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEE-RRVV---ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG 421 (636)
T ss_pred EEEecCCcceEEEEEecc-ceEE---EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence 999999999999999976 4443 556789999999999831
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCC
Q 018235 288 -----------EPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 288 -----------~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-...|.+++.|-.++|||+...
T Consensus 422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CcccccccccceEEEeecccccceEEEEecchh
Confidence 0235888899999999999764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-11 Score=105.53 Aligned_cols=160 Identities=19% Similarity=0.330 Sum_probs=113.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-+..|.+++|-|.+...+|.|+.. -|.||......+.......... ....+....|| ..|++|.|++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~-------~~~qvl~~pgh-~pVtsmqwn~dgt- 208 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMST-------HHLQVLQDPGH-NPVTSMQWNEDGT- 208 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccc-------cchhheeCCCC-ceeeEEEEcCCCC-
Confidence 356899999999987788887764 5999998774433221111000 12334555666 4899999999998
Q ss_pred eEEEEcC-CCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.|++++- +..|.|||+.++... ++. ..-+.+.-+.|||++. +|.++..|+..++|..... ..........+
T Consensus 209 ~l~tAS~gsssi~iWdpdtg~~~-----pL~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~-wt~erw~lgsg 281 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDTGQKI-----PLIPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS-WTKERWILGSG 281 (445)
T ss_pred EEeecccCcceEEEEcCCCCCcc-----cccccCCCceeeEEEcCCCC-EEEEecccceeeeehhccc-ceecceeccCC
Confidence 8888876 457999999884332 222 2446788899999999 8888999999999965543 22222223344
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
.|...+|+|.|++|++.+.
T Consensus 282 rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ceeeeeecCCCCEEEEEEc
Confidence 8999999999999987764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=102.87 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=123.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|.+-+++|.+ .+++.|+.+|+|.++.+....+...... ...++..+++|..++|.+.|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~-----------gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPP-----------GKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCC-----------CCcceeeccccCCCeeeeeeeh--h-hee
Confidence 45666788988 7899999999999999987432221111 2456778899999999999983 3 788
Q ss_pred EEcCCCcEEEEecCCCCc-------ceecCccccC---CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 247 TGDCNSCIYLWEPASDAT-------WNVDPNPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~-------~~~~~~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
+|+ ||.|+-|..+...+ |.+ ..++.. --..|+++...|.+.++|.+| .|+.++-||+.++ +-...+
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~-~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~ 152 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEV-KIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREY 152 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhh-cCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEE
Confidence 887 69999998765322 110 011111 124678999999988566555 8999999999998 666778
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++|+.-|.++.-...+..++.+.. |+++|+||.++++
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~E----DGtvRvWd~kt~k 189 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAE----DGTVRVWDTKTQK 189 (325)
T ss_pred cCCcceeeeeeecccCcceeecCC----CccEEEEeccccc
Confidence 999999999988444445555544 9999999999875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-10 Score=104.54 Aligned_cols=160 Identities=23% Similarity=0.374 Sum_probs=125.6
Q ss_pred CceeeEEE-eCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 166 GCVNRIRA-MTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 166 ~~V~~i~~-~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
..+..+.+ .+++..+++..+. ++.+.+|++.. .......+..|...+.+++|+|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~- 168 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------PGKLIRTLEGHSESVTSLAFSPDGK- 168 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------CCeEEEEEecCcccEEEEEECCCCC-
Confidence 47777777 7777435555444 99999999986 1356678889999999999999998
Q ss_pred eEEEEcC-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE-EeecCCC
Q 018235 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~ 321 (359)
.+++++. ++.+++|++.. .... ..+.+|...|.++.|+|.+..++++++.|+.|++||.+.+ ..+. .+..|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 243 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRT-GKPL---STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSD 243 (466)
T ss_pred EEEecCCCCCceEEEEcCC-CceE---EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCc
Confidence 8888885 99999999986 3333 5667799999999999998746666699999999998865 5555 5778887
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+ ...|++++.+++.... ++.+++|+....
T Consensus 244 ~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 273 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSS----DGTIRLWDLRSS 273 (466)
T ss_pred ce-eEeECCCCCEEEEecC----CCcEEEeeecCC
Confidence 75 4489999977764444 899999998754
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.5e-10 Score=97.13 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=112.5
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~ 241 (359)
...++|..|++.++. +++. -.+.|+||.+...+ +.++.+..... .+ ..+.+|..
T Consensus 92 ~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkG-lC~~~~~~ 146 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKG-LCSLCPTS 146 (346)
T ss_pred EeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCc-eEeecCCC
Confidence 457899999999865 3332 35789999998643 22333322221 11 22223322
Q ss_pred CC-eEEE-EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCceEEee-
Q 018235 242 TG-RLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK- 317 (359)
Q Consensus 242 ~~-~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~- 317 (359)
.. +||- |-.-|.|.|-|+... ... +...+.+|.+.|.|++.+-+|. ++||+|..|+ |||||.+++ ..+..+.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~-~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g-~~l~E~RR 222 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLAST-KPN-APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDG-TLLQELRR 222 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhc-CcC-CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCC-cEeeeeec
Confidence 21 3333 455689999998762 221 1245788999999999999999 9999999999 899999998 7777773
Q ss_pred -cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 -AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 -~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.-.+.|.||+|||+..+|+.... .+++.|+..+.
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSd----KgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSD----KGTLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcC----CCeEEEEEeec
Confidence 33567999999999999999876 67788876554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=112.96 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc-cc-------------cCCCCC--C-
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET-IV-------------GQGAPQ--V- 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~-~~-------------~~~~~~--~- 216 (359)
+..+...+.+|+..|++++|+.+| ..+|+|+.|..|.+|.-.-... +...+. .. +..-+. .
T Consensus 42 dG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSLSDFGLW 119 (1081)
T ss_pred CcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce-eeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence 344557788999999999999999 8999999999999998643211 110000 00 000000 0
Q ss_pred -CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeE---------------
Q 018235 217 -SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE--------------- 280 (359)
Q Consensus 217 -~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~--------------- 280 (359)
...+.+... .....+.+.+|..+|. +|+-|-.+|+|.|-+-.. .....+..-.|..++|.
T Consensus 120 S~~qK~V~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~g--Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 120 SPEQKSVSKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNG--EEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred ChhhhhHHhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCC--CcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 001111111 1234688999999998 999999999999875432 11111111122333333
Q ss_pred -------------------------------EEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 281 -------------------------------DLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 281 -------------------------------~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
|+++.|+|. ++..|+.|+.+++|- |.+ -.+-++......|+.+...
T Consensus 196 ~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fT-R~G-vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFT-RDG-VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEe-ecC-eEEeeccccceeEEEEEEc
Confidence 445566667 677777788888773 444 4455555567899999999
Q ss_pred CCCCeEEEEeeecccceEEEEEeCc
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|+++.++.++. |++|..++.-
T Consensus 273 PNsQ~v~~GCq----DGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQ----DGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEc----cCeeehhhhH
Confidence 99999999998 8888877653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=112.10 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=105.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
.+..|.+.+...+|+|++. .+|..+. +..|++||+... ....+..+.+|. .+++
T Consensus 198 ~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg-------------------~~~~l~~~~g~~---~~~~ 254 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSG-------------------ARKVVASFRGHN---GAPA 254 (429)
T ss_pred EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCC-------------------ceEEEecCCCcc---Ccee
Confidence 3456888999999999994 4454443 247999998761 012233344443 3689
Q ss_pred eCCCCCCeEEEE-cCCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 237 WNPITTGRLVTG-DCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 237 ~sp~~~~~l~sg-s~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
|+|++. .|+.+ +.+|.+.|| |+.. +. . ..+..+...+..++|+|++..++++...+|..+||++.......
T Consensus 255 wSPDG~-~La~~~~~~g~~~Iy~~d~~~-~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 255 FSPDGS-RLAFASSKDGVLNIYVMGANG-GT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred ECCCCC-EEEEEEecCCcEEEEEEECCC-CC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 999998 66654 568876665 5543 33 2 34566777788999999999445555567889999876542223
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+ .+.. .+++|+|+|+.+++... +. +.+||..+|.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~----~~-i~~~Dl~~g~ 364 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMING----DN-VVKQDLTSGS 364 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcC----CC-EEEEECCCCC
Confidence 333 3443 45789999999887654 44 4448877764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=111.25 Aligned_cols=143 Identities=10% Similarity=0.070 Sum_probs=93.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
....++|+|++..++++.+.+|.+.||.+... ......+..+...+.+..|+|++..+++
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN--------------------GGTPSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECC--------------------CCCeEeeccCCCCcCCEEECCCCCEEEE
Confidence 34468999999555555567888777754431 1223455566667889999999983444
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
+++.+|...||++...+... ..+ .+.. ..++|+|++. .|+..+.++ +.+||+.++ ... .+..+ .....+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~---~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~ 377 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGA---SLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESP 377 (429)
T ss_pred EECCCCCceEEEEECCCCCe---EEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCc
Confidence 55567888999876533322 112 3333 4578999999 676666665 556999886 322 22212 134567
Q ss_pred EEcCCCCeEEEEee
Q 018235 327 SWNRCWLAVCWHLE 340 (359)
Q Consensus 327 ~~s~~~~~l~~~~~ 340 (359)
+|+|+|..+++...
T Consensus 378 ~~sPdG~~i~~~s~ 391 (429)
T PRK01742 378 SISPNGIMIIYSST 391 (429)
T ss_pred eECCCCCEEEEEEc
Confidence 89999999998865
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=103.75 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=94.7
Q ss_pred cCCCceeeEEEeCCCCcEEEE-E-eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICAS-W-ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat-~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+|...+.++.+++.+ .++|- + ...|.|.|||... .+++..+..|.+++-+|+||++
T Consensus 127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n---------------------l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN---------------------LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc---------------------ceeeeEEEecCCceeEEEECCC
Confidence 456667666666666 34443 2 3469999999987 6888999999999999999999
Q ss_pred CCCeEEEEcCCCc-EEEEecCCCCcceecCccccCC--CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 241 TTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGH--SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
|. +|||++..|+ |+++.+.. ++.+ ..|... ...|.+++|+|+++ +|++.|..++|+||-+..
T Consensus 185 G~-llATASeKGTVIRVf~v~~-G~kl---~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GT-LLATASEKGTVIRVFSVPE-GQKL---YEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred CC-EEEEeccCceEEEEEEcCC-ccEe---eeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 99 9999999997 69999987 4444 334322 35789999999999 999999999999998764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=120.70 Aligned_cols=165 Identities=21% Similarity=0.362 Sum_probs=127.9
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+.....+|.+.|+.++.+..+ .++|+++.|..|++|.+.. +.|+..+.||++.|++|
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~---------------------~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD---------------------GAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred hhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCC---------------------CchHHHHhccccceeee
Confidence 3446677999999999998877 8999999999999999998 78999999999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCC-CC---------------------------------------------------
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPAS-DA--------------------------------------------------- 263 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~-~~--------------------------------------------------- 263 (359)
+|+|.. +.+.||++++||.+- ..
T Consensus 281 afsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l 355 (1113)
T KOG0644|consen 281 AFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL 355 (1113)
T ss_pred ccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce
Confidence 999964 567799999999871 00
Q ss_pred -----c------------------cee----cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 264 -----T------------------WNV----DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 264 -----~------------------~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
. |.. ..+.+.+|...+..+.+||.++.+..+++.||+..|||+-.+ .++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-~pik~y 434 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKHY 434 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC-Ccceee
Confidence 0 000 012223677888999999999977789999999999999988 566554
Q ss_pred -ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 317 -KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 317 -~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+|.. +..-+|+++|..++...+ .+.+.|...
T Consensus 435 ~~gh~k-l~d~kFSqdgts~~lsd~----hgql~i~g~ 467 (1113)
T KOG0644|consen 435 FIGHGK-LVDGKFSQDGTSIALSDD----HGQLYILGT 467 (1113)
T ss_pred ecccce-eeccccCCCCceEecCCC----CCceEEecc
Confidence 45544 556689999987776654 455666543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-11 Score=109.83 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=134.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccc-----------------------------
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIV----------------------------- 209 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~----------------------------- 209 (359)
++-+.|+...++|..+|+|..++|||..--.|++||+......+..+....
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 555689999999999999999999999999999999977433222111000
Q ss_pred ---------cCCCC-----------------CC-----CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 210 ---------GQGAP-----------------QV-----SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 210 ---------~~~~~-----------------~~-----~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.++.+ .+ .++..+..|....++++++..++... +|++|+.+|.|-.||
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWD 203 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEec
Confidence 00000 00 23344444555557889999999886 999999999999999
Q ss_pred cCCCCcce-------ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcC
Q 018235 259 PASDATWN-------VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNR 330 (359)
Q Consensus 259 ~~~~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~ 330 (359)
++...... +...+.......|+++.|+.+|- -++.|..+|.|.|||+|+. .++..- ....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccC-CceeecccCCccceeeecccc
Confidence 98743211 11122222334699999999887 8999999999999999997 565433 33456899999987
Q ss_pred CCC-eEEEEeeecccceEEEEEeCcCCc
Q 018235 331 CWL-AVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 331 ~~~-~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+. -.+.++. ...++|||..+|.
T Consensus 282 ~~~q~~v~S~D----k~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 282 TDQQNKVVSMD----KRILKIWDECTGK 305 (703)
T ss_pred cCCCceEEecc----hHHhhhcccccCC
Confidence 632 2333333 5679999988775
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-12 Score=123.79 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=106.3
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+.++.+|...|.|+.|...| ..|+||++|..|+||.... ..++.++.||.+.+..++.
T Consensus 183 ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlav 240 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhcc
Confidence 34566899999999999999 8999999999999999776 6788899999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+..+. +++++++|..|++|-+.. +.++ ..+.+|++.|++|+|+|.- +.+.||+++|||.|
T Consensus 241 s~~n~-~iaaaS~D~vIrvWrl~~-~~pv---svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 241 SSNNT-MIAAASNDKVIRVWRLPD-GAPV---SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred chhhh-hhhhcccCceEEEEecCC-CchH---HHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 99887 999999999999999987 5554 6789999999999999964 67899999999999
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-10 Score=105.84 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=107.3
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+..|...+...+|+|++. .|+..+. ...|++||+.. ... ..+..+.....++.|
T Consensus 199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLAT---------------------GQR-ELVASFRGINGAPSF 255 (433)
T ss_pred eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCC---------------------CCE-EEeccCCCCccCceE
Confidence 346778899999999994 4444442 34699999876 222 222233334457899
Q ss_pred CCCCCCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCc--EEEEECCCCCCc
Q 018235 238 NPITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGH--IAIWDTRVGKSA 312 (359)
Q Consensus 238 sp~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~--I~iwD~r~~~~~ 312 (359)
+|++..++++.+.+| .|++||+.. +.. ..+..+......++|+|++. .|+.++ .+|. |.++|+.++ .
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~~----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g-~- 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGS-RQL----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGG-S- 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCC-CCe----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCC-C-
Confidence 999984445656565 589999876 332 33555555667889999999 555554 4555 666676654 2
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...+..+......++|+|+|+.+++.... .....|.+|+..++..
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSV 372 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCe
Confidence 33333333445578999999999886542 2235789999877653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=98.32 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=128.2
Q ss_pred CCeEEE--EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCC
Q 018235 154 TPILQL--RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKD 230 (359)
Q Consensus 154 ~~~~~~--~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~ 230 (359)
.+.++. ...+|.-+++.+.|+-..++++.||++||.+..||++.+ ...++. .+-|..
T Consensus 152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p--------------------~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP--------------------KTFIWHNSKVHTS 211 (339)
T ss_pred eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC--------------------cceeeecceeeec
Confidence 445544 678999999999999999999999999999999999952 333333 456888
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.|.+|.-||..+.+++||+.|-.|++||.|+-++++.+ ..-.+.|+.+.++|...+.+..++.-.-.+|.+.....
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----CccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 99999999887779999999999999999986666521 12348999999999865544444444446777776652
Q ss_pred C----ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceE-EEEEeCcCCc
Q 018235 311 S----ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL-FMILDCSRGE 357 (359)
Q Consensus 311 ~----~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~-i~iwd~~~g~ 357 (359)
. .....+.|.+-+..-.|+....+++... ..|+. ..+|-.-++.
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs---FYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS---FYDKKIRQLWLHITGE 336 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeee---ccccceeeeeeeccCC
Confidence 2 2223367888888888866555555432 23555 4588766554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=109.42 Aligned_cols=143 Identities=18% Similarity=0.288 Sum_probs=112.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.++.||.+.|.+-.. +.-.....|.+.+.+-.|+|+|. -|+|++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 5677789999999887544 44556788999999999999999 788888999999998
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
- + +-.. .++.....+|+|++|.|+..+++.+.+. .+.|=-+... ..+...++|.+-|.+++||+.+.+++.+
T Consensus 133 r-s-GMLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 133 R-S-GMLR---STVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred c-c-chHH---HHHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccc-cceeEEeccCcEEEEeecCccccceeec
Confidence 4 4 3322 3344566899999999999877766553 4555555554 5677889999999999999999999887
Q ss_pred eeecccceEEEEEeCcCC
Q 018235 339 LEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g 356 (359)
.. |..+++||....
T Consensus 205 GE----D~kfKvWD~~G~ 218 (737)
T KOG1524|consen 205 GE----DFRFKIWDAQGA 218 (737)
T ss_pred CC----ceeEEeecccCc
Confidence 66 999999997643
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-10 Score=99.32 Aligned_cols=142 Identities=17% Similarity=0.115 Sum_probs=111.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
-++.|++.+ .-++++-.+|.+.+-+.... ..+.+..++.|.-+.+-..|+...+.++.+|
T Consensus 125 lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-------------------~le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 125 LSLDISTSG-TKIFVSDSRGSISGVYETEM-------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred eEEEeeccC-ceEEEEcCCCcEEEEeccee-------------------eeeecccccccceeeeeeecccCCCceEEec
Confidence 355566666 45666677888875554431 1344567899999999999998888899999
Q ss_pred cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
+.|+.+..||+|.+++++ .+....|...|.+|.-+|..++.+++|+.|-.|++||+|+..+|+..-. -.+.|+.|.+
T Consensus 185 gDD~~l~~~D~R~p~~~i--~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~ 261 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFI--WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH 261 (339)
T ss_pred CCCceEEEEEecCCccee--eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe
Confidence 999999999999766655 2335569999999999998888999999999999999997757765543 3478999999
Q ss_pred cCCCC
Q 018235 329 NRCWL 333 (359)
Q Consensus 329 s~~~~ 333 (359)
+|.-.
T Consensus 262 ~p~~~ 266 (339)
T KOG0280|consen 262 HPEIF 266 (339)
T ss_pred cchhh
Confidence 99543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=102.56 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=100.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...+.+...+|+|++..++++.+.+|...||.+... ......+..+........|+|+++
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------------------GSGLRRLTQSSGIDTEPFFSPDGR 296 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------------------CCCcEECCCCCCCCcCeEEcCCCC
Confidence 345667789999999666667788888888876541 222344544554556788999998
Q ss_pred CeEE-EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCCceEEeec
Q 018235 243 GRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 243 ~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~~~~~ 318 (359)
.|+ ++..+|...||.+...+... ..+..+.......+|+|++. .|+..+.++ .|.+||+.++ . ...+..
T Consensus 297 -~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~ 369 (427)
T PRK02889 297 -SIYFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATG-Q-VTALTD 369 (427)
T ss_pred -EEEEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCC-C-eEEccC
Confidence 555 44445677777654322211 11211222334678999999 666655443 5999999876 3 233332
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
......++|+|+|+.|++.....+ ...+.+.+.
T Consensus 370 -~~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~ 402 (427)
T PRK02889 370 -TTRDESPSFAPNGRYILYATQQGG-RSVLAAVSS 402 (427)
T ss_pred -CCCccCceECCCCCEEEEEEecCC-CEEEEEEEC
Confidence 233467899999999988765322 233444444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-09 Score=101.45 Aligned_cols=165 Identities=11% Similarity=0.053 Sum_probs=105.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+.+...+|+|+|..++.+.. ....|++|++... ....+..+.++ ..++.|||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-------------------~~~~l~~~~~~---~~~~~~SP 252 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------------------AVRQVASFPRH---NGAPAFSP 252 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------------------CeEEccCCCCC---cCCeEECC
Confidence 356778999999999954444432 3457889998651 01222223333 34689999
Q ss_pred CCCCeEE-EEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEE--ECCCCCCce
Q 018235 240 ITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIW--DTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iw--D~r~~~~~~ 313 (359)
++. .|+ +.+.+| .|++||+.+ +.. ..+..+...+...+|+|++. .|+..+. ++...|| |+.++ ..
T Consensus 253 DG~-~La~~~~~~g~~~I~~~d~~t-g~~----~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g--~~ 323 (429)
T PRK03629 253 DGS-KLAFALSKTGSLNLYVMDLAS-GQI----RQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGG--AP 323 (429)
T ss_pred CCC-EEEEEEcCCCCcEEEEEECCC-CCE----EEccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCC--Ce
Confidence 998 555 445555 488899876 332 23444455678899999999 5555554 4555555 66554 33
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+..+........|+|+|+.+++.... .....|.+|+..++.+
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGV 367 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCe
Confidence 4444444456678999999998876542 2235688888877653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=99.38 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=96.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|.++|.++.|.+.- ..=++|+.+..+..|.+......+ +......+ -...+..+..-
T Consensus 199 ~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gsl---------------q~~~e~~l--knpGv~gvrIR 260 (323)
T KOG0322|consen 199 SPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSL---------------QIRKEITL--KNPGVSGVRIR 260 (323)
T ss_pred cchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcc---------------cccceEEe--cCCCccceEEc
Confidence 4455799999999998765 445677888889999988732211 01111122 23367789999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
|++. .|||++-|++|++|..++ .+++ ..+.-|.+.|++++|+|+.. ++|++|.|++|.+|++
T Consensus 261 pD~K-IlATAGWD~RiRVyswrt-l~pL---AVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGK-ILATAGWDHRIRVYSWRT-LNPL---AVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred cCCc-EEeecccCCcEEEEEecc-CCch---hhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 9999 999999999999999988 4444 66788999999999999977 9999999999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-10 Score=112.28 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=131.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+++++..+.-|.+.|+.++.++....+|+|||.||+|++|++........ ..+...++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 67788888899999999999887768999999999999999987322110 1222334433345777
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCC--Cc---------------ceecC---------------------------
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASD--AT---------------WNVDP--------------------------- 269 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--~~---------------~~~~~--------------------------- 269 (359)
++...+.+. .+|.|+.||.|++.++... .. .++..
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 888887777 8888888888888877541 00 00000
Q ss_pred -------ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCC---eEEEE
Q 018235 270 -------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWL---AVCWH 338 (359)
Q Consensus 270 -------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~---~l~~~ 338 (359)
.......+.|++++.+|.+. +++.|...|.+.+||+|-+ .++.++ ..+..+++.+..+|-.+ ..+.+
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 00112347789999999998 9999999999999999986 666666 45568888888887544 33333
Q ss_pred eeecccceEEEEEeCcCCc
Q 018235 339 LEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g~ 357 (359)
..+ ..+.+.+|+..+|.
T Consensus 1260 ~~~--~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1260 GSS--SNNEVSTWNMETGL 1276 (1431)
T ss_pred ccc--CCCceeeeecccCc
Confidence 321 36779999988774
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-09 Score=102.09 Aligned_cols=166 Identities=12% Similarity=0.065 Sum_probs=111.4
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..|.+.+...+|+|++..++.+.. .+..|++||+.. +.. ..+..+...+.+.+|+
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEEC
Confidence 4468889999999999954444432 346899999976 222 2344455567789999
Q ss_pred CCCCCeEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~ 313 (359)
|++..++++.+.++. |++||+.. +.. ..+..+.......+|+|++. .|+..+ .+| .|.++|+..+ ..
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~-~~~----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~--~~ 326 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRS-GTT----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS--NP 326 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCC-Cce----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC--Ce
Confidence 999844456666665 67778765 332 34555666677899999998 555554 333 5778887764 34
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..+...+....|+|+|+.+++.... .....|.+|+...+.
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSG 369 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCc
Confidence 4454445567778999999999876532 223567888875443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-09 Score=102.30 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=100.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+.+.....+|+|++..++++.+.+| .|++||+.. .. +..+..+.......+|+|+
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---------------------g~-~~~lt~~~~~~~~~~~spD 302 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS---------------------RQ-LTRLTNHFGIDTEPTWAPD 302 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC---------------------CC-eEECccCCCCccceEECCC
Confidence 34555667899999976766766666 588888876 22 2334445445567899999
Q ss_pred CCCeEEEEc-CCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCceE
Q 018235 241 TTGRLVTGD-CNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sgs-~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~~ 314 (359)
+. .|+.++ .+|. |+++++.. +... .+..+......++|+|++. .|+..+ .++ .|.+||+.++ . ..
T Consensus 303 G~-~l~f~sd~~g~~~iy~~dl~~-g~~~----~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g-~-~~ 373 (433)
T PRK04922 303 GK-SIYFTSDRGGRPQIYRVAASG-GSAE----RLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTG-S-VR 373 (433)
T ss_pred CC-EEEEEECCCCCceEEEEECCC-CCeE----EeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCC-C-eE
Confidence 98 665544 4555 55566654 3321 2222223345689999999 555443 332 5999999876 3 23
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+. +.......+|+|+|..+++.... .....|.+++...
T Consensus 374 ~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g 412 (433)
T PRK04922 374 TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDG 412 (433)
T ss_pred ECC-CCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCC
Confidence 332 33234567999999998887653 2234577777644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-09 Score=100.62 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=97.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+.+..++|+|++..++++.+.+| .|++||+.. ... ..+..+...+....|+|++.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------g~~-~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQI-RQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEccCCCCCcCceEECCCCC
Confidence 344556899999966666655555 488888865 222 23333444667899999998
Q ss_pred CeEEEEc-CCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CC--CcEEEEECCCCCCceEEe
Q 018235 243 GRLVTGD-CNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VD--GHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 243 ~~l~sgs-~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~D--g~I~iwD~r~~~~~~~~~ 316 (359)
.|+..+ .++...|| ++.. +.. ..+..+...+....|+|++. .|+..+ .+ ..|.+||+.++ . ...+
T Consensus 300 -~I~f~s~~~g~~~Iy~~d~~~-g~~----~~lt~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g-~-~~~L 370 (429)
T PRK03629 300 -NLAYTSDQAGRPQVYKVNING-GAP----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG-G-VQVL 370 (429)
T ss_pred -EEEEEeCCCCCceEEEEECCC-CCe----EEeecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCC-C-eEEe
Confidence 665554 44555555 5543 222 22333444566789999999 555544 33 35888999876 3 3334
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
... ......+|+|+|..+++.... +....+.+++..
T Consensus 371 t~~-~~~~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~ 406 (429)
T PRK03629 371 TDT-FLDETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTD 406 (429)
T ss_pred CCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEECC
Confidence 321 223467899999999887653 223457777754
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-10 Score=109.33 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=117.3
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
-.+++|+.-+.|.+|+... ...|. .+.||.+.++++.|+.++. +++|+|.|.+|++|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~--------------------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE--------------------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWP 203 (967)
T ss_pred EEEEeccccccEEEEeccc--------------------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeee
Confidence 6889999999999999885 23444 6889999999999999998 999999999999999
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC-CCEEEEEEcCCCCeEEE
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRCWLAVCW 337 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~s~~~~~l~~ 337 (359)
+.+..... ....+|+..|.+++|+|+ .++|++.|.++++|+... ..+..+..|. ..|+.+...+...++++
T Consensus 204 i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 204 IDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred cccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEe
Confidence 98743322 456789999999999998 799999999999996654 3444666664 46899999988887777
Q ss_pred EeeecccceEEEEEeCc
Q 018235 338 HLEVMMEHFLFMILDCS 354 (359)
Q Consensus 338 ~~~~~~~d~~i~iwd~~ 354 (359)
+.. |+.+++|+..
T Consensus 276 ~g~----Ds~lk~~~l~ 288 (967)
T KOG0974|consen 276 GGN----DSTLKLWDLN 288 (967)
T ss_pred ecc----Ccchhhhhhh
Confidence 765 8889998754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=104.78 Aligned_cols=172 Identities=12% Similarity=0.076 Sum_probs=106.9
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+.+.+...+|+|++..++.+...+ ..|++||+.. +... .+........+..|+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------g~~~-~l~~~~g~~~~~~~S 248 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------GRRR-VVANFKGSNSAPAWS 248 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------CCEE-EeecCCCCccceEEC
Confidence 346778899999999994444443233 4599999976 2221 222223345689999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++..++++.+.+|...||.+...+... ..+..+...+....|+|++..++++...+|...||.+.........+..
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 9998334467788887777654322222 3455555666778999999944444434567777765432122233322
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.......+|+|+|+++++.... .....|.+|+..++..
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQV 364 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCCe
Confidence 33334467899999999877542 2235789999877653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=96.55 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=128.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeCCC-
Q 018235 165 QGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPI- 240 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~- 240 (359)
...+..++-++..++++|+|+.. ..+.|||+....+.+..... |--.+.-. .-.++++.|-+.
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-------------pnD~L~LrVPvW~tdi~Fl~g~ 214 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV-------------PNDRLGLRVPVWITDIRFLEGS 214 (412)
T ss_pred CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC-------------CCccccceeeeeeccceecCCC
Confidence 36788889999889999999988 88999999874222211110 00000000 013456777655
Q ss_pred -CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 241 -TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 241 -~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.. .||+++.-+.+++||++.+..++ ..|.--..++.++...|.+. ++.+|..-|.+..||+|.+......+.+.
T Consensus 215 ~~~-~fat~T~~hqvR~YDt~~qRRPV---~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 215 PNY-KFATITRYHQVRLYDTRHQRRPV---AQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCc-eEEEEecceeEEEecCcccCcce---eEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCCc
Confidence 44 89999999999999999866655 45555678999999999998 89999999999999999984444557888
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|.+|..+|..++++...- |..+||+|..+
T Consensus 290 tGsirsih~hp~~~~las~GL----DRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGL----DRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCCceEEeecc----ceeEEEeeccc
Confidence 999999999999998886654 99999999877
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-09 Score=101.92 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=105.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+.+...+|+|++..++++.+.+|. |++||+.. .....+..+........|+|
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS----------------------GTTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC----------------------CceEEccCCCCccCceeEcC
Confidence 3567788899999999767777777666 66667655 22344555555566789999
Q ss_pred CCCCeEEEEc-CCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCCCce
Q 018235 240 ITTGRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~ 313 (359)
++. .|+..+ .+| .|++||+.. +.. +.+..+...+....|+|++. .|+..+.+ ..|.+||+..+ ..
T Consensus 300 DG~-~i~f~s~~~g~~~Iy~~d~~g-~~~----~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~--~~ 370 (435)
T PRK05137 300 DGS-QIVFESDRSGSPQLYVMNADG-SNP----RRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGS--GE 370 (435)
T ss_pred CCC-EEEEEECCCCCCeEEEEECCC-CCe----EEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCC--ce
Confidence 998 665554 344 577778754 332 23333445567789999999 55555432 35888887654 22
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccc--eEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEH--FLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d--~~i~iwd~~~g~ 357 (359)
..+. ....+..++|+|+|+.|++.....+.. ..|.+++...+.
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 3332 233467889999999998876533221 356677765543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=101.99 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=114.6
Q ss_pred CceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
-.++.++|.+.. ++.|||++.-++|++||.+. ..+|+..|..-..++.++.--|.+. .
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--------------------qRRPV~~fd~~E~~is~~~l~p~gn-~ 261 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--------------------QRRPVAQFDFLENPISSTGLTPSGN-F 261 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcc--------------------cCcceeEeccccCcceeeeecCCCc-E
Confidence 346678888762 37899999999999999997 4789999988888999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
+++|...|.+..||++. +... ...|.+-+++|.+|..+|+++ ++|+|+-|+.|||+|+.+. +.+..+. -.+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~-~kl~--g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr-kll~kvY-vKs~lt 335 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRG-GKLL--GCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR-KLLHKVY-VKSRLT 335 (412)
T ss_pred EEEecccchhheecccC-ceee--ccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc-hhhhhhh-hhcccc
Confidence 99999999999999988 4433 256888999999999999999 9999999999999999985 4443331 233466
Q ss_pred EEEEcCC
Q 018235 325 VISWNRC 331 (359)
Q Consensus 325 ~i~~s~~ 331 (359)
+|-+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=111.19 Aligned_cols=202 Identities=15% Similarity=0.285 Sum_probs=154.6
Q ss_pred hcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCC
Q 018235 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (359)
Q Consensus 61 ~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 140 (359)
..|-..|-.--+||-|-. ..-|.++.|... .-.||.+. +.
T Consensus 62 l~h~tpw~vad~qws~h~---------a~~~wiVsts~q-----kaiiwnlA---~s----------------------- 101 (1081)
T KOG0309|consen 62 LHHITPWQVADVQWSPHP---------AKPYWIVSTSNQ-----KAIIWNLA---KS----------------------- 101 (1081)
T ss_pred eeccCcchhcceecccCC---------CCceeEEecCcc-----hhhhhhhh---cC-----------------------
Confidence 446678888888888763 235777777543 23355542 10
Q ss_pred CCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC
Q 018235 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (359)
Q Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (359)
....++.-+.+|...|+.+.|+|+.+.++||++.|..|+.||++. ...
T Consensus 102 ------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~ 149 (1081)
T KOG0309|consen 102 ------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHR 149 (1081)
T ss_pred ------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CCc
Confidence 144566788899999999999999999999999999999999998 467
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 221 ~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
|+.++..-......+.|+...+ .++..+..+.|++||.+.++.++ ..+.+|...|+.+.|...-...+.+++.||+
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred ceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 8877766666778999998887 44445557789999999977766 6788899999999998876668999999999
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
|++||.......-......+.+|+.-.+-|.|...+..
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEec
Confidence 99999887522222233456788888888888765543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=105.93 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=98.9
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|+-.+.+.++||.+. ++|+|..||.|.+|.--....-....+.+..|...|++++|+++|. .|.||+..|.+.+|.+.
T Consensus 204 Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 204 HTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLE 281 (792)
T ss_pred hcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeec
Confidence 444578899999998 9999999999999953220111111256778999999999999999 99999999999999999
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++ + ...+..-.++|..+.++|++.+.+..+. |+.|.+......+
T Consensus 282 T~-~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~----DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 282 TG-K-KQFLPRLGSPILHIVVSPDSDLYSLVLE----DNQIHLIKASDLE 325 (792)
T ss_pred CC-C-cccccccCCeeEEEEEcCCCCeEEEEec----CceEEEEeccchh
Confidence 97 3 3455778899999999999999888887 8888888775543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.1e-10 Score=98.06 Aligned_cols=158 Identities=17% Similarity=0.312 Sum_probs=112.8
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTG 243 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ 243 (359)
...+..++|+++- .-+|++..|-.|++|+-.. ..| ..++ .....+.+|+|-|.+..
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss---------------------t~p-t~Lks~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS---------------------TCP-TKLKSVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC---------------------CCC-ceecchhhcceeEEEeccCCcc
Confidence 3567888999855 5678889999999999776 122 2232 23458999999999885
Q ss_pred eEEEEcCCCcEEEEecCCCCcceec----------CccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCc
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVD----------PNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSA 312 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~----------~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~ 312 (359)
.|+.| +-+-|++|........... +....+| ..|+.++|.+++. .+++++ .|..|.|||..++ ..
T Consensus 155 elavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg-~~ 230 (445)
T KOG2139|consen 155 ELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTG-QK 230 (445)
T ss_pred eeeee-ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCC-Cc
Confidence 55555 5778999976542221110 1122344 6899999999998 777776 5788999999987 32
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.-.....+.+.-+.|+|++.++....- |..+++|+.
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~----davfrlw~e 267 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATC----DAVFRLWQE 267 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecc----cceeeeehh
Confidence 2222344566889999999999988776 888999953
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=101.50 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=112.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.-.+++|+|..++-. .+||+|+.+|.|..||.+....... .... ...+-.........|+++.|+.+|-
T Consensus 173 ~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~-l~~~---------~~v~s~pg~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 173 TDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT-LDAA---------SSVNSHPGGDAAPSVTALKFRDDGL 241 (703)
T ss_pred cccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee-eecc---------cccCCCccccccCcceEEEecCCce
Confidence 445999999999988 7999999999999999887221100 0000 0000001111223699999999886
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.++.|...|.+.|||+++ .+++. ..-.+...+|..+.|.+.+. ..++|+ ....++|||-.++ ++...+. ...
T Consensus 242 -~~aVGts~G~v~iyDLRa-~~pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiE-pt~ 314 (703)
T KOG2321|consen 242 -HVAVGTSTGSVLIYDLRA-SKPLL--VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIE-PTS 314 (703)
T ss_pred -eEEeeccCCcEEEEEccc-CCcee--ecccCCccceeeecccccCCCceEEec-chHHhhhcccccC-Cceeecc-ccC
Confidence 999999999999999998 44431 22334557899999988733 255544 4567999999998 6666664 345
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
++|.+|+-|++.+++++..
T Consensus 315 ~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 315 DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CcCceeeecCCceEEEecC
Confidence 6999999999988888765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=100.06 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=115.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC--CCCceEEEEe
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDW 237 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~ 237 (359)
.-..|...|.|+.|...+ ..+.+|..+|+|.+.|+.+ ...+.++.. ..+.||.|+.
T Consensus 100 ~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt---------------------~qsi~V~~~~~~~~~VY~m~~ 157 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET---------------------KQSIYVANENNNRGDVYHMDQ 157 (609)
T ss_pred ccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc---------------------ceeeeeecccCcccceeeccc
Confidence 334677999999999877 8999999999999999987 344444432 2348999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
+|... .|++.+.+|.|.+||++........ ............+-|+|..+.+|++.+..+-+.+||+|....++...
T Consensus 158 ~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~ 235 (609)
T KOG4227|consen 158 HPTDN-TLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS 235 (609)
T ss_pred CCCCc-eEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh
Confidence 99977 9999999999999999874333211 11222445678899999999899999999999999999875554432
Q ss_pred -----ecCCCCEEEEEEcCCCCeEE
Q 018235 317 -----KAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 317 -----~~h~~~V~~i~~s~~~~~l~ 336 (359)
.........+.|+|.|..++
T Consensus 236 ~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 236 MFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred ccccCcccchhhhheeeCCCCCeeh
Confidence 22223345678999987654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-08 Score=94.35 Aligned_cols=170 Identities=9% Similarity=0.021 Sum_probs=111.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
+.+.+.+....+.++|++..+++++..++.|.+|++.... . ...+.... .......+.++|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 4445667788999999995555665678999999997410 0 01111111 122346899999
Q ss_pred CCCCeEEEE-cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-----
Q 018235 240 ITTGRLVTG-DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----- 313 (359)
Q Consensus 240 ~~~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----- 313 (359)
+++ +|+++ ..++.|.+|++...+........+. +......++++|++..+++++..++.|.+||+.+.....
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 55554 4588999999975332211112222 334467789999999666778888999999998641211
Q ss_pred -EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 314 -TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 314 -~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+. .......+.|+|+++++...... .+.|.+|+..
T Consensus 168 ~~~~~-~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v~~~~ 205 (330)
T PRK11028 168 EVTTV-EGAGPRHMVFHPNQQYAYCVNEL---NSSVDVWQLK 205 (330)
T ss_pred ceecC-CCCCCceEEECCCCCEEEEEecC---CCEEEEEEEe
Confidence 1121 23446789999999988776543 6788899876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=95.72 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=100.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC--cE--EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG--HV--QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.....+|+|+|..++++....| .+ .+|++.... ...+.....++.......+|+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~------------------~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA------------------IGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC------------------CCcceEeecCCCCCcCCeEECC
Confidence 4555667899999966666554444 23 335554310 0122233333333345789999
Q ss_pred CCCCeEEE-EcCCCcEEEEe--cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-C--CcEEEEECCCCCCce
Q 018235 240 ITTGRLVT-GDCNSCIYLWE--PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~s-gs~dg~I~lwd--~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~ 313 (359)
+|. .|+. ...+|...||. +...+... ..+..+...+...+|||++. .|+.++. + ..|.+||+.++ . .
T Consensus 291 DG~-~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g-~-~ 363 (428)
T PRK01029 291 DGT-RLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATG-R-D 363 (428)
T ss_pred CCC-EEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCC-C-e
Confidence 998 5554 44567655554 33212211 33444455677889999999 5555443 3 36899999886 3 3
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+......+....|+|+|+.|++.... .....|.+++...+.
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKK 406 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCC
Confidence 3343333456778999999988876542 224567888877664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=106.54 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=130.5
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.-...|..++|.... .++|. .....++|||-.. ..++.++.|. ++..|.|-|..
T Consensus 167 i~v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyH 221 (545)
T KOG1272|consen 167 INVMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYH 221 (545)
T ss_pred eehhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchh
Confidence 3456788888988766 56665 5668899999764 4455565554 78899999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
- +|++++..|.++.-|+.. ++.+ ..+....+.+..++-+|-+. ++-+|...|+|.+|...+. .++..+..|.+
T Consensus 222 f-LL~~~~~~G~L~Y~DVS~-GklV---a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g 294 (545)
T KOG1272|consen 222 F-LLVAASEAGFLKYQDVST-GKLV---ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK-EPLVKILCHRG 294 (545)
T ss_pred h-eeeecccCCceEEEeech-hhhh---HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc-chHHHHHhcCC
Confidence 6 999999999999999987 5554 44555567778888899998 9999999999999998886 78888889999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|++|++.+.|.+++++.. |..++|||++.
T Consensus 295 ~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTGL----DRKVKIWDLRN 324 (545)
T ss_pred CcceEEECCCCcEEeeccc----ccceeEeeecc
Confidence 9999999999999998876 99999999875
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-08 Score=91.12 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=108.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...+....+.++|++..++++...++.|.+|++..... ....+..+.+ ....++++++|++.
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----------------~~~~~~~~~~-~~~~~~~~~~p~g~ 138 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----------------PVAPIQIIEG-LEGCHSANIDPDNR 138 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----------------CCCceeeccC-CCcccEeEeCCCCC
Confidence 44556678999999965666655689999999964110 0112222322 23467889999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceec-Ccccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC---ceEEee
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVD-PNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFK 317 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~ 317 (359)
..+++...++.|.+||+...+..... ..... ........+.|+|+++.++++...+++|.+|++..... .+..+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 44466667799999999763332100 00011 11234678999999994445555599999999974211 223332
Q ss_pred cC------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AH------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ ......+.|+|+++++....+. .+.|.+|+...
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~---~~~I~v~~i~~ 259 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRT---ASLISVFSVSE 259 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCC---CCeEEEEEEeC
Confidence 22 1123468899999988887543 67899998643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-09 Score=102.59 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=122.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.|.-.+++.+++|.+ .++|++..||+|.+|.--.... .......+..|..+|.+|+|+++|.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G~ 264 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDGA 264 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCCc
Confidence 477778999999999 8999999999999996433100 1234567889999999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceEEeec--
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKA-- 318 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~-- 318 (359)
+|+||+..|.+.+|.+.++.+ +-+..-.++|..+.+||++. +.+.+..|..|.+...... +..+..+..
T Consensus 265 -~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 265 -YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred -eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 999999999999999988542 33455678999999999999 8888889999999877543 111211211
Q ss_pred ------CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 ------HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 ------h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..+-.+.++++|....++.... .+.|+++|.-+.
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~----~g~vQ~ydl~td 377 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGH----PGHVQFYDLYTD 377 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCC----CceEEEEecccc
Confidence 2344667888885555554444 677888776554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-10 Score=103.68 Aligned_cols=171 Identities=23% Similarity=0.326 Sum_probs=131.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l 235 (359)
+..++-+|.|+||.|.|+..| .+++|+++|..|.+||... .++...| .||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 446777999999999999999 8999999999999999987 3444443 5788888877
Q ss_pred EeCCCCC-CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 236 DWNPITT-GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 236 ~~sp~~~-~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
.|-|... .-+++++.||.+++=.+...+... ....+..|.++|.-++.-|..++.|.||+.|+.+.-+|+|.. .+..
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e-~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~ 269 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVE-NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAE 269 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeecccccee-cceecccccCccceeeecCCCCCcccccccccceeeeeeccC-Cccc
Confidence 7776532 269999999999988776533322 224466799999999999999999999999999999999987 3322
Q ss_pred Ee---ecCCC---CEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcC
Q 018235 315 SF---KAHNA---DVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~---~~h~~---~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ .++.. ..+.|+.+|.+. .++.+.. +..++++|.++
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~----dqf~RvYD~R~ 313 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGS----DQFARVYDQRR 313 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCCh----hhhhhhhcccc
Confidence 22 33444 578899999887 4444433 77788887664
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=106.67 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=101.4
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|.|.|.++.++-++ .++||.|+|.++++|++.+. .....+.-+|+..++.+.+.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------------------~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------------------EVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------------------cccCcccccccceeEEEEecc
Confidence 677999999999999999 89999999999999999982 222235558999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
. +++|++.|-+.++|+.+- ..+ ..+.+|. ..+..+..++... +.+|++.|+.+++||+...
T Consensus 229 n---~i~t~gedctcrvW~~~~-~~l----~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 229 N---RIITVGEDCTCRVWGVNG-TQL----EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c---eeEEeccceEEEEEeccc-cee----hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 7 799999999999997643 222 4677776 5788999988887 9999999999999998764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-09 Score=91.68 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=158.6
Q ss_pred HhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCC----CCC
Q 018235 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSN----DDE 131 (359)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~----~~~ 131 (359)
-+|+|-+..++-+-.-+.|+++..+ ..+++.| .+..|++||+..-...+.. .+.|... -..
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~---------a~FLlst-----NdktiKlWKi~er~~k~~~-~~~~~~~~~~~~~~ 138 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNL---------AEFLLST-----NDKTIKLWKIRERGSKKEG-YNLPEEGPPGTITS 138 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCc---------cEEEEec-----CCcceeeeeeecccccccc-ccccccCCCCccce
Confidence 3578888888889999999998632 3455566 3557999999643222210 0000000 000
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccC
Q 018235 132 DVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211 (359)
Q Consensus 132 d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~ 211 (359)
- --.-+-..+... ...|.- .-.-+|+--||+|.++.+. ..+.+ ++|-.|.+|.+......+
T Consensus 139 l-----r~p~~~~~~~~v--ea~prR-v~aNaHtyhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~sF--------- 199 (433)
T KOG1354|consen 139 L-----RLPVEGRHDLEV--EASPRR-VYANAHTYHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQSF--------- 199 (433)
T ss_pred e-----eceeecccccee--eeeeee-eccccceeEeeeeeecCcc-ceEee-ccceeeeeccccccCCce---------
Confidence 0 000000000000 001111 1123588999999999988 45555 678999999998732211
Q ss_pred CCCCCCCCCCcEEecCCC-----CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------------cCccccC
Q 018235 212 GAPQVSNQSPLVKFGGHK-----DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIG 274 (359)
Q Consensus 212 ~~~~~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~ 274 (359)
.+.-++.+. .-|++-.|+|.....|+-.+..|+|+|.|+|+..-+.. ....|.+
T Consensus 200 ---------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffse 270 (433)
T KOG1354|consen 200 ---------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSE 270 (433)
T ss_pred ---------eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHH
Confidence 112222332 34788899999888899899999999999995311110 0011223
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC---------------CEEEEEEcCCCCeEEEEe
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA---------------DVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~---------------~V~~i~~s~~~~~l~~~~ 339 (359)
--++|.+++|+++|. ++++-.. -+|+|||+....+++.++..|.. +-..++|+-++..++++.
T Consensus 271 iIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 271 IISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred HhhhhhceEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 347899999999999 7776554 57999999776678888876632 225679999988888775
Q ss_pred eecccceEEEEEeCcCCcc
Q 018235 340 EVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 340 ~~~~~d~~i~iwd~~~g~v 358 (359)
- .+.+++++...|..
T Consensus 349 y----~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 349 Y----NNVFRVFNLARGSK 363 (433)
T ss_pred c----cceEEEecCCCCcc
Confidence 4 78899999777764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-08 Score=93.75 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=104.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++++...+ ..|.+|++.. +.. ..+........+..|+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---------------------g~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---------------------GRR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC---------------------CCE-EEccCCCCCcCCeEEC
Confidence 346778899999999995554544333 4688889876 111 1122222334478999
Q ss_pred CCCCCeEE-EEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~ 313 (359)
|++. .|+ +.+.+| .|++||+.+ +.. ..+..+........|+|++..++.+...+| .|.++|+.++ . .
T Consensus 252 pDG~-~la~~~~~~g~~~Iy~~d~~~-~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-~ 323 (430)
T PRK00178 252 PDGS-KLAFVLSKDGNPEIYVMDLAS-RQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-A 323 (430)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCC-CCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-E
Confidence 9998 554 565555 588888876 332 234455556677899999984444443444 4677777765 3 2
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+...........|+|+|..+++..... ....|.+++..++..
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSV 367 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCE
Confidence 33322222334578999999998876432 234577888877653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-08 Score=94.30 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=107.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++.+...+ ..|++||+.. ... ..+..+.....++.|+
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------g~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------GQR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 345677788999999995444443332 5799999876 221 2233344456679999
Q ss_pred CCCCCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~ 313 (359)
|++..++++.+.++ .|++|++.+ +.. ..+..+.......+|+|++. .|+.++ ..+ .|.++|+.++ ..
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~-~~~----~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~--~~ 314 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDG-KQL----TRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGG--EV 314 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCC-CCE----EECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCC--CE
Confidence 99984455666555 488888876 322 23344445556779999998 554444 344 4777787765 33
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..+...+..+.|+|++.++++..... ....|.+|+..++.
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG 357 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC
Confidence 44544556677889999999998876521 12367788876654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-08 Score=92.44 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+.+.+..++|+|++..++++.+.++ .|++|++.. .....+..+........|+|+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~----------------------~~~~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG----------------------KQLTRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC----------------------CCEEECCCCCCCCCCEEECCC
Confidence 45667778999999966666666555 477888765 112233334434456789999
Q ss_pred CCCeEEEE-cCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCCceE
Q 018235 241 TTGRLVTG-DCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sg-s~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (359)
+. .|+.+ ...+ .|+++++.. +.. ..+..+...+..+.|+|++. .++.++.++ .|.+||+.++ . ..
T Consensus 289 g~-~l~~~s~~~g~~~iy~~d~~~-~~~----~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~-~-~~ 359 (417)
T TIGR02800 289 GK-SIAFTSDRGGSPQIYMMDADG-GEV----RRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGG-G-ER 359 (417)
T ss_pred CC-EEEEEECCCCCceEEEEECCC-CCE----EEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCC-C-eE
Confidence 98 66544 4344 477777765 332 23333455677889999998 666666655 7888998875 2 23
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+... ......+|+|++..|++...... ...+.+.+.
T Consensus 360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~-~~~l~~~~~ 396 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNGRMILYATTRGG-RGVLGLVST 396 (417)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEeCCC-cEEEEEEEC
Confidence 33222 22345689999998888765322 234555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=101.34 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=127.7
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+-...+.+|+..|..|....+. +-+++++.|.+|++|.++...... ....+.++++.|+.+|+.
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~--------------~tsaCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI--------------GTSACQFTYQAHKKPIHD 789 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc--------------ccceeeeEhhhccCcccc
Confidence 34446778999999988876655 788999999999999998732211 134578899999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCC--CCCEEEEEeCCCcEEEEECCCCCC
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+.|-.+.+ .++ ++||.|++||+-- +.++. +... ...+.+..+..-|+ ..-++|-|+...+|+++|.|.. .
T Consensus 790 igfL~~lr-~i~--ScD~giHlWDPFi-gr~La--q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e 862 (1034)
T KOG4190|consen 790 IGFLADLR-SIA--SCDGGIHLWDPFI-GRLLA--QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-E 862 (1034)
T ss_pred eeeeeccc-eee--eccCcceeecccc-cchhH--hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-c
Confidence 99987765 555 4589999999865 33331 1111 11233333333343 3325566689999999999987 4
Q ss_pred ceEEe-----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSF-----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~-----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
-...+ .+.++-+.+|+..+.|..++.++. .++|.+.|.++|.|
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS----nGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALS----NGCIAILDARNGKV 910 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhc----CCcEEEEecCCCce
Confidence 33333 334567899999999999999887 78999999999985
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.4e-09 Score=103.09 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC
Q 018235 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (359)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~ 250 (359)
+.|..+..+++++ ++...|+|||.... ....-.-.+....+++|.-+....++++.|-.
T Consensus 1171 ~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E--------------------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVT-GDVRSIRIWDAHKE--------------------QVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eehhhhCCeEEec-CCeeEEEEEecccc--------------------eeEeecccCCCccceeecccccCCceEEEeec
Confidence 4566655455555 55889999999872 12222223344567888776665459999999
Q ss_pred CCcEEEEecCCCCcceecCccccCCCCC--eEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCC---CCEE
Q 018235 251 NSCIYLWEPASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHN---ADVN 324 (359)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~---~~V~ 324 (359)
||.|++||.|.... -.....+..|... |..+.+-+.|-.-|++|+.||.|++||+|.. ......+..|- +.++
T Consensus 1230 DGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 99999999987322 1113556778876 9999999988756999999999999999994 23334444443 3599
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++..+++..+++.+.. ..|+||+....
T Consensus 1309 al~VH~hapiiAsGs~-----q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-----QLIKIYSLSGE 1335 (1387)
T ss_pred eeeeccCCCeeeecCc-----ceEEEEecChh
Confidence 9999999999887753 56999987643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-08 Score=91.44 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=115.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCceEEEEeCCCCCCeEEEEcCCCcEE
Q 018235 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (359)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~ 255 (359)
...+|-|...|.|.+|+... ++....+ .+|-+.+.++.|+..-. .|.|++.|+.+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~---------------------g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAG---------------------GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVV 127 (541)
T ss_pred ceEEEeecCCccEEEEEecC---------------------CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEE
Confidence 35788889999999999887 3433444 46888999999998876 999999999999
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCC----
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC---- 331 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~---- 331 (359)
.|+... .... +.+.+.+..+..++.+|++. ++++++ +.|++||+.+. +.+..|.+|.++|++++|--.
T Consensus 128 ~~~~~~-~~~~---~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKE-KVII---RIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEeccc-ceee---eeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccc
Confidence 999976 4433 67778889999999999998 888777 68999999998 888999999999999999887
Q ss_pred -CCeEEEEeeecccceEEEEEeC
Q 018235 332 -WLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 332 -~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
|.+++..... ...+.+|-.
T Consensus 200 ~G~~vLssa~~---~r~i~~w~v 219 (541)
T KOG4547|consen 200 IGKYVLSSAAA---ERGITVWVV 219 (541)
T ss_pred ccceeeecccc---ccceeEEEE
Confidence 6777665442 344556643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-08 Score=90.35 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=120.6
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEE--ecCCC
Q 018235 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRK--VAHQG 166 (359)
Q Consensus 89 ~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~H~~ 166 (359)
+..+++|| .+..|.++++. ...+..++ -.|.+
T Consensus 70 t~~lvlgt-----~~g~v~~ys~~-----------------------------------------~g~it~~~st~~h~~ 103 (541)
T KOG4547|consen 70 TSMLVLGT-----PQGSVLLYSVA-----------------------------------------GGEITAKLSTDKHYG 103 (541)
T ss_pred ceEEEeec-----CCccEEEEEec-----------------------------------------CCeEEEEEecCCCCC
Confidence 57899999 46688888883 33344333 36999
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|+++.++.+- ..|.|++.|+.|..|+... ....+.+.+....+.+++.+|++. .|+
T Consensus 104 ~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~---------------------~~~~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 104 NVNEILDAQRL-GCIYSVGADLKVVYILEKE---------------------KVIIRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred cceeeeccccc-CceEecCCceeEEEEeccc---------------------ceeeeeeccCCCccceEEEcCCCC-EEE
Confidence 99999988776 7899999999999999987 566778888888899999999987 898
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC-----CCCEEEEEeCCCcEEEEECCCC
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+++ +.|++||+.+ .+.+ ..|.||.+.|++++|--. |.++|.+......|.+|-++..
T Consensus 161 ~as--~~ik~~~~~~-kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 161 TAS--RQIKVLDIET-KEVV---ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ecc--ceEEEEEccC-ceEE---EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 886 7899999987 5554 789999999999999877 7767888888888999977763
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=103.78 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=125.9
Q ss_pred ceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 167 CVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 167 ~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.|-.+.|+|+. +..+++.+. ..-.||++.... ....-+.+.||+..++.+.|+|+.+-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss------------------~~aIef~lhghsraitd~n~~~q~pdV 129 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSS------------------SNAIEFVLHGHSRAITDINFNPQHPDV 129 (1081)
T ss_pred hhcceecccCCCCceeEEecCc-chhhhhhhhcCC------------------ccceEEEEecCccceeccccCCCCCcc
Confidence 45566777765 456666554 455689988732 133456788999999999999999999
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++++.|..++.||+++...+. ..+..-......|.|+-..++++|+ +..+.|++||+|.+..++..+++|.+.|+
T Consensus 130 latcsvdt~vh~wd~rSp~~p~---ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPF---YSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred eeeccccccceeeeccCCCcce---eeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeee
Confidence 9999999999999999865544 2222223455679999988856654 55567999999999889999999999999
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|+..-...++...+ +++++.|+...
T Consensus 206 ~~~fnr~~~s~~~s~~~---d~tvkfw~y~k 233 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSSN---DGTVKFWDYSK 233 (1081)
T ss_pred hHHHhhhhhhhhcccCC---CCceeeecccc
Confidence 99999987777777765 89999998654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=109.15 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=117.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++...+..+. ..|++++|+.+| +.+..+..||.+.+|.... +|....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 44555555555 899999999999 7888889999999999874 77788888988877
Q ss_pred EEEeCCCCCCeEEEEc---CCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGD---CNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
.+.|-- . .+++++ .++.+++||..-.. .+.+ -..|.+.++++++-|..+ +|+||+.+|-|+|||+|..
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v----~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLV----HTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCccccee----eeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH
Confidence 777754 3 666653 46789999986533 3332 278999999999999999 9999999999999999986
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..+++++ |. ...+++.+.. .+.++||+...
T Consensus 2369 -ql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2369 -QLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSE 2399 (2439)
T ss_pred -HHHHHhhh---------hh-hhheeeccCc----ccceEEEEccc
Confidence 55555543 44 3445555544 56678887653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-07 Score=88.32 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=101.3
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++.+...++ .|++||+.... ...+..+.+ ...+..|+
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-------------------~~~lt~~~g---~~~~~~wS 270 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-------------------REKVTSFPG---INGAPRFS 270 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-------------------eEEecCCCC---CcCCeeEC
Confidence 3456778999999999965555544444 57778876510 111222222 23478999
Q ss_pred CCCCCeEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~ 314 (359)
|++..++++.+.+|. |+++|+.. +.. ..+..+.......+|+|++..++.+...++. |.++|+.++ . ..
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~t-g~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~ 343 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIAT-KAL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VS 343 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCC-CCe----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EE
Confidence 999844455666775 67778765 332 2344455566788999999955555544444 556677665 2 33
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+..........+|+|+|+.+++.... .....|.+++..++.
T Consensus 344 ~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 344 RLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGA 385 (448)
T ss_pred EEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCC
Confidence 332222233457999999998876542 112345556766654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-07 Score=88.85 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+.....+|+|++..++++.+.+|. |+++|+.. .....+..+.......+|+|++..
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t----------------------g~~~~lt~~~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT----------------------KALTRITRHRAIDTEPSWHPDGKS 319 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC----------------------CCeEECccCCCCccceEECCCCCE
Confidence 344578999999667777777776 56666654 122334444445667899999984
Q ss_pred eEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCCceEEeecC
Q 018235 244 RLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~h 319 (359)
++++...++. |+++++.. ++... .++.++ .....+|+|++..++++...++. |.++|+.++ . ...+...
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~-g~~~~--Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~ 392 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLAS-GKVSR--LTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST 392 (448)
T ss_pred EEEEECCCCCceEEEEECCC-CCEEE--EecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC
Confidence 4455544554 55556654 33221 112222 23456899999944454444554 455677765 2 2333222
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
. .....+|+|+|+.+++..... ....+.+++..
T Consensus 393 ~-~d~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~ 425 (448)
T PRK04792 393 R-LDESPSVAPNGTMVIYSTTYQ-GKQVLAAVSID 425 (448)
T ss_pred C-CCCCceECCCCCEEEEEEecC-CceEEEEEECC
Confidence 1 123458999999998876532 22346666653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-07 Score=86.73 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+.+...+|+|++..++++.+.+| .|++||+.. .....+..+........|+|++.
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS----------------------RQLSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC----------------------CCeEEcccCCCCcCCeEECCCCC
Confidence 345557899999966666666666 577778765 12233444444556789999998
Q ss_pred CeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCceEEee
Q 018235 243 GRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 243 ~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~~~~~ 317 (359)
.++++...+| .|+++++.. +.... ..+.+ .......|+|++. .++..+ .++ .|.+||+.++ . ...+.
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~-g~~~~--lt~~~--~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt 371 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNG-GRAER--VTFVG--NYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRG-S-VRILT 371 (430)
T ss_pred EEEEEECCCCCceEEEEECCC-CCEEE--eecCC--CCccceEECCCCC-EEEEEEccCCceEEEEEECCCC-C-EEEcc
Confidence 4444544444 466777755 33221 11222 2234578999999 555444 343 4788898876 2 23332
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+.......+|+|+|+.+++.....+ ...|.+++..
T Consensus 372 -~~~~~~~p~~spdg~~i~~~~~~~g-~~~l~~~~~~ 406 (430)
T PRK00178 372 -DTSLDESPSVAPNGTMLIYATRQQG-RGVLMLVSIN 406 (430)
T ss_pred -CCCCCCCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 1222235689999999988765322 2345566554
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=89.16 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=97.7
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--ccc--cccc-c--ccCCCCC---C-------CCCC-
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALA--ESET-I--VGQGAPQ---V-------SNQS- 220 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~--~~~~-~--~~~~~~~---~-------~~~~- 220 (359)
...+.|.+.|.++.|+|++ .++|+-+.+ ..+||+...... ... .... . .++..+. . .+..
T Consensus 180 l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~ 257 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG 257 (398)
T ss_pred hhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence 3455899999999999999 789998888 999999987411 000 0000 0 0000000 0 0000
Q ss_pred ---------------CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 221 ---------------PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 221 ---------------~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
+.+........|.+|+.+.+|+ ++|.|+.+|.|.|++...- +.+ ...-..|...|+.|.|+
T Consensus 258 v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~l-q~~--~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 258 VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSL-QRL--QYVKEAHLGFVTGLTFS 333 (398)
T ss_pred eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEecee-eee--EeehhhheeeeeeEEEc
Confidence 1111111123689999999999 9999999999999998763 222 13345799999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~ 308 (359)
|+.. .+++.+.+..++|.-+..
T Consensus 334 Pdsr-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 334 PDSR-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcC-cccccccCCceeEEEEee
Confidence 9988 888999998888876654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-08 Score=90.05 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=121.1
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCC--------------CCCCCcEEe-cC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV--------------SNQSPLVKF-GG 227 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~ 227 (359)
-...|+.|+|.+++ ...+...+.|.+|++|.+....................+ -...|.+++ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 35679999999877 345666688999999998764333211111111000000 112333444 35
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc--eecCcc--ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDPNP--FIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~~~--~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
|.--|.+|+++.+.+ .++|++ |=.|.||.+.-..+. ++++.+ +..-+.-|++..|||..-++|+-.+..|+|||
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 777899999999998 888886 889999998653221 111111 22234567888999999889999999999999
Q ss_pred EECCCCCCc-----eEEe----------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSA-----LTSF----------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~-----~~~~----------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|+|...-| +... ..--+.|..+.|++.|++++... -.++++||.+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nm 302 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNM 302 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccc
Confidence 999964111 1111 11123578899999999998763 35799999854
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-07 Score=78.07 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
.+++..++++. ++++.+....|.+|.+...+..+.. ......+..--+.+|+.... .||++..||++.|||+|....
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccccc
Confidence 78899999998 8999998999999999876655532 12222344556789998888 999999999999999998755
Q ss_pred ceEEe----ecCCCCEEEEEEcCCCC
Q 018235 312 ALTSF----KAHNADVNVISWNRCWL 333 (359)
Q Consensus 312 ~~~~~----~~h~~~V~~i~~s~~~~ 333 (359)
++... ..|++.+..+.|++.|.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCc
Confidence 55443 46899999999998775
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-06 Score=82.07 Aligned_cols=167 Identities=9% Similarity=0.064 Sum_probs=97.0
Q ss_pred CCCceeeEEEeCCCCc--EEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPH--ICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+..-+|+|+|.. ++++...+| .|++.++... ....+..+ ........|||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-------------------~~~~lt~~---~g~~~~p~wSP 240 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-------------------AGKKILAL---QGNQLMPTFSP 240 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-------------------CceEeecC---CCCccceEECC
Confidence 4556677799999854 333444444 4666676651 11222223 33445789999
Q ss_pred CCCCeEE-EEcCCC----cEEEEecCCC--CcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE--CCCC
Q 018235 240 ITTGRLV-TGDCNS----CIYLWEPASD--ATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWD--TRVG 309 (359)
Q Consensus 240 ~~~~~l~-sgs~dg----~I~lwd~~~~--~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD--~r~~ 309 (359)
+|. .|+ +.+.+| .+.+|++..+ +.. ..+. ++.......+|+|+|..++.+...+|...||. +...
T Consensus 241 DG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~~----~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 241 RKK-LLAFISDRYGNPDLFIQSFSLETGAIGKP----RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCC-EEEEEECCCCCcceeEEEeecccCCCCcc----eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 998 555 443333 3344666542 121 1222 22234567899999994444444567656664 4322
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
......+..+...+....|+|+|+.|++..... ....|.+|+..++++
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGRD 363 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCCe
Confidence 123344444555677889999999998875432 235688899887754
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=83.77 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=74.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+..++.+|.++|.++.|.+.. .++.+|..|..|.+||+.. .......+.+|...+.
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg--------------------~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG--------------------RKGTAYELQGHNDKVQ 244 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC--------------------Ccceeeeeccchhhhh
Confidence 344557788999999999999977 8999999999999999987 2345577889999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPAS 261 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~ 261 (359)
++...+... +|.|++.||.|.+|+++.
T Consensus 245 ~l~~~~~t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 245 ALSYAQHTR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence 999988887 999999999999999974
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.5e-08 Score=84.30 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC-----CCc
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-----NSC 253 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~-----dg~ 253 (359)
+-++++..||.+.+++.+...... ...+.. |. .-.+.+....++ .+.++.+ -+.
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~---------------~~i~~~----~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALM---------------SRIPSI----HS-GSASRKICRHGN-SILSGGCGNWNAQDN 160 (319)
T ss_pred CceEecCCCceEEEEechHHHhhh---------------hhcccc----cc-cccccceeeccc-EEecCCcceEeeccc
Confidence 578999999999999987621111 011111 11 111222333333 3333321 234
Q ss_pred EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCC
Q 018235 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL 333 (359)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~ 333 (359)
.+.|+++....... ....-..|.+++-+|..++++++|+.||.+-|||.|....++..+.+|.++|+.+-|+|.+.
T Consensus 161 ~~a~~~~p~~t~~~----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 161 FYANTLDPIKTLIP----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eeeecccccccccc----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 56677665332221 11112349999999999989999999999999999998567777799999999999999876
Q ss_pred eEEEEeeecccceEEEEEeCcC
Q 018235 334 AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 334 ~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
--++.+.. ++.+-.||.++
T Consensus 237 ~~Lft~se---dGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSE---DGSLWHWDAST 255 (319)
T ss_pred hheeEecC---CCcEEEEcCCC
Confidence 55555543 88888998874
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-08 Score=86.94 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-++.|.++.|...+ +++..|..+|.|...|++...+. ...+...+ .|...+++|..-.....
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----------------~~~~a~rl-yh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----------------NGWCAQRL-YHDSSVTSLQILQFSQQ 312 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----------------CCcceEEE-EcCcchhhhhhhccccc
Confidence 44678888888777 78999999999999999873111 13444444 57788888887663334
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE--EEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee----
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED--LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---- 317 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~--v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---- 317 (359)
+|++.+.+|.|++||.|. -+..+.++.+.||...-.- +-.++.+. ++++++.|...|||.++.+ ..+.++.
T Consensus 313 ~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g-hLl~tipf~~s 389 (425)
T KOG2695|consen 313 KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG-HLLCTIPFPYS 389 (425)
T ss_pred eEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC-ceeeccCCCCc
Confidence 899999999999999997 3443334778888643332 23345556 7888999999999999987 6666663
Q ss_pred cCCCCEEEEEEcC
Q 018235 318 AHNADVNVISWNR 330 (359)
Q Consensus 318 ~h~~~V~~i~~s~ 330 (359)
+...++.+++|..
T Consensus 390 ~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 390 ASEVDIPSVAFDS 402 (425)
T ss_pred cccccccceehhc
Confidence 2333566666653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=83.07 Aligned_cols=140 Identities=13% Similarity=0.154 Sum_probs=104.5
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
-..|+|.| +++|+++.- .+.|-|..+ .+....|.. -+.|.-+.|.-+....|....
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~c-ldki~yieW~ads~~ilC~~y 68 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFLC-LDKIVYIEWKADSCHILCVAY 68 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHHH-HHHhhheeeeccceeeeeeee
Confidence 35789999 899998765 777777765 122222221 345677899988875667778
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
.++.|.+|++.+ ..|. ..+......+..++|||+|+++|.+..-+-.|.+|.+.+. + ...+.--...+..++|+
T Consensus 69 k~~~vqvwsl~Q-pew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~-~~~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 69 KDPKVQVWSLVQ-PEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-K-GYLLPHPKTNVKGYAFH 142 (447)
T ss_pred ccceEEEEEeec-ceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-e-eEEecccccCceeEEEC
Confidence 889999999977 5665 4566677889999999999989999999999999999985 2 23333234456889999
Q ss_pred CCCCeEEEEe
Q 018235 330 RCWLAVCWHL 339 (359)
Q Consensus 330 ~~~~~l~~~~ 339 (359)
|+|++.+...
T Consensus 143 ~dg~f~ai~s 152 (447)
T KOG4497|consen 143 PDGQFCAILS 152 (447)
T ss_pred CCCceeeeee
Confidence 9999876443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-07 Score=80.53 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=69.2
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
-+.||-.-++.++|+|+++ ++++++.|..|++-..... ... -.-+.||+.-|..++.-++. .|+|+|.|++|++
T Consensus 146 ~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~--f~I-esfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT--FVI-ESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc--cch-hhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 3559999999999999998 9999999999998665442 221 13456899999999987765 5999999999999
Q ss_pred EECCCCCCceEEe
Q 018235 304 WDTRVGKSALTSF 316 (359)
Q Consensus 304 wD~r~~~~~~~~~ 316 (359)
||++++ +.+.++
T Consensus 220 Wd~~sg-k~L~t~ 231 (390)
T KOG3914|consen 220 WDITSG-KLLDTC 231 (390)
T ss_pred EecccC-Cccccc
Confidence 999998 444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=89.07 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=122.7
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
++.....+++.|+... .++|+|+.||.+++..+.+........+.... .......++.||...|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~------snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAA------SNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccc------cccchhhhhccCcceEEEEEecccc
Confidence 4667889999999877 79999999999999998874333222221111 0233456889999999999999988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .|-|.+.+|.|.+|-+-. ++|.-. ..-...++.|.+++|+-+|. -++..-.||.|.+=.+... .+.--.-...
T Consensus 84 Q-KLTtSDt~GlIiVWmlyk-gsW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN--RIwgKeLkg~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYK-GSWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN--RIWGKELKGQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeec-ccHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc--eecchhcchh
Confidence 7 999999999999999876 676521 11233568899999999998 8888888888877655542 1111111111
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
-...+.|+++.+.+++... ++.+.++|.
T Consensus 158 ~l~hv~ws~D~~~~Lf~~a----nge~hlydn 185 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKA----NGETHLYDN 185 (1189)
T ss_pred eccceeecccHHHHHhhhc----CCcEEEecc
Confidence 2335689998887777666 444555543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-08 Score=88.33 Aligned_cols=190 Identities=17% Similarity=0.172 Sum_probs=122.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc----------c---cccc------CCCCCCCCC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES----------E---TIVG------QGAPQVSNQ 219 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~----------~---~~~~------~~~~~~~~~ 219 (359)
.++-.|.+.|+.++.-|..++.|.|++.|+.|.-+|++.....-... . .... +..+....-
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 55668999999999999999999999999999999987632110000 0 0000 000000000
Q ss_pred CCc---EEecC------------------CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-C-cc-------eecC
Q 018235 220 SPL---VKFGG------------------HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-A-TW-------NVDP 269 (359)
Q Consensus 220 ~~~---~~~~~------------------h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~-~~-------~~~~ 269 (359)
..+ ..+.. ....|+++.++..+. -|+++-.|-.|+++...-+ + .+ ....
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 000 00100 011478889987776 5555566888888844321 1 00 0012
Q ss_pred ccccCCCC--CeEEEEe-cCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccce
Q 018235 270 NPFIGHSA--SVEDLQW-SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHF 346 (359)
Q Consensus 270 ~~~~~h~~--~V~~v~~-sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~ 346 (359)
+.|.||.. .|-.+-| -|... ++++||.-|.|.||+-.++ +.+..+.+-..-||||.-+|.-++|+...- +.
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGi----d~ 458 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGI----DH 458 (559)
T ss_pred hhhcccccccccceeeeccCccc-eEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCC----cc
Confidence 34778863 4666665 45555 9999999999999998886 555555555558999999999999887654 78
Q ss_pred EEEEEeCcC
Q 018235 347 LFMILDCSR 355 (359)
Q Consensus 347 ~i~iwd~~~ 355 (359)
-|+||-+-+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 899998743
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-05 Score=75.28 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=99.6
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..+.++|++ .++.+.+.||.|.++|+.. .+.+.++.. .....++++|++|+..++++
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~---------------------~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLAT---------------------GKVVATIKV-GGNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTS---------------------SSEEEEEE--SSEEEEEEE--TTTEEEEEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCc---------------------ccEEEEEec-CCCcceEEEcCCCCEEEEEe
Confidence 446789998 5566667899999999998 455666654 33567899999999344455
Q ss_pred cCCCcEEEEecCCCCcceecC--ccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 249 DCNSCIYLWEPASDATWNVDP--NPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~--~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
...+.+.++|.++ .+.+..+ ... ....+.+..|.-+|....++++.-.-+.|-+.|...................
T Consensus 97 ~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 97 YEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH 175 (369)
T ss_dssp EETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred cCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence 5789999999877 3333100 011 1134578888888988834444445588888898876233323333445577
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...|+|++++++.+... .+.+.++|..++.
T Consensus 176 D~~~dpdgry~~va~~~---sn~i~viD~~~~k 205 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANG---SNKIAVIDTKTGK 205 (369)
T ss_dssp EEEE-TTSSEEEEEEGG---GTEEEEEETTTTE
T ss_pred ccccCcccceeeecccc---cceeEEEeeccce
Confidence 88999999998776442 4567777776654
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3e-07 Score=81.50 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=135.3
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccccc-----------------CCCC--
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG-----------------QGAP-- 214 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----------------~~~~-- 214 (359)
+|.+.....+|...||....-|.. .-+.+.++|.+|+||--+.............+ +..+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 778888888999999999888877 56778899999999965543332222111111 0000
Q ss_pred --------CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC------------------------
Q 018235 215 --------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD------------------------ 262 (359)
Q Consensus 215 --------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~------------------------ 262 (359)
.-++.........|...++++-|+-..+ .+++.+.|..+.---.+.+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 0023444556677888888888887766 7777777765432111111
Q ss_pred ----Cc---------ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 263 ----AT---------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 263 ----~~---------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
++ ....+..+.+|...+.+++|.|... ++.+|..|.+|.+||+-........+.+|...|..++.-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 00 0011245678999999999999988 999999999999999987755666778999989888877
Q ss_pred CCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.-+.++.... |+.|.+|+....
T Consensus 250 ~~t~~l~S~~e----dg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHTRQLISCGE----DGGIVVWNMNVK 272 (404)
T ss_pred hhheeeeeccC----CCeEEEEeccce
Confidence 76666655443 888999987653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=82.51 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=132.2
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecC
Q 018235 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH 164 (359)
Q Consensus 85 ~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H 164 (359)
.-+|+-+|+.|+ .++-++||++..+.+.. .......+...-
T Consensus 1057 s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~----------------------------------~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGS-----DDGTVKVWNLRKLEGEG----------------------------------GSARSELTYSPE 1097 (1431)
T ss_pred cCCCCceEEEec-----CCceEEEeeehhhhcCc----------------------------------ceeeeeEEEecc
Confidence 345667788777 67789999885332110 022233444445
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc-----------ccccccccCCCCCCCCCC-------------
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL-----------AESETIVGQGAPQVSNQS------------- 220 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~------------- 220 (359)
.+.+.++..++.+ +.+|.++.||.|++.++..-.... ...+..............
T Consensus 1098 ~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred CCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 6789999999988 788888999999999987621100 000000000000000000
Q ss_pred --------CcEE--ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-
Q 018235 221 --------PLVK--FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP- 289 (359)
Q Consensus 221 --------~~~~--~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~- 289 (359)
...+ +.-..+.|++++.+|.+. .+++|...|.+-+||+|- +.++. .--.++...++-+..+|..+
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~--sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPIL--SWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeec-Cceee--cccCcccCCcceEEeeccCCC
Confidence 0001 111234689999999998 999999999999999987 33331 12233457788888887655
Q ss_pred -CEEEEEe--CCCcEEEEECCCCCCceEEeecC--------CC-----------CEEEEEEcCCCCeEEEEeeecccceE
Q 018235 290 -DVFASCS--VDGHIAIWDTRVGKSALTSFKAH--------NA-----------DVNVISWNRCWLAVCWHLEVMMEHFL 347 (359)
Q Consensus 290 -~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h--------~~-----------~V~~i~~s~~~~~l~~~~~~~~~d~~ 347 (359)
++.++++ ..+-|.+|++.++ .+...+... .. .....++..-+.+++.+.. |..
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs----d~k 1327 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS----DMK 1327 (1431)
T ss_pred CceEEEecccCCCceeeeecccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----ccc
Confidence 4555544 5788999999987 433333211 11 1122233333445555544 788
Q ss_pred EEEEeCcCCc
Q 018235 348 FMILDCSRGE 357 (359)
Q Consensus 348 i~iwd~~~g~ 357 (359)
|+.||.....
T Consensus 1328 IR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1328 IRKWDPTRPE 1337 (1431)
T ss_pred eeeccCCCcc
Confidence 9999987643
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-08 Score=59.67 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=35.5
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
+++.++.+|...|++|+|+|++. +|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45788999999999999999987 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=75.33 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=91.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..+.+...+|+|++..++++.+.+| .|.++++.. .. ...+..+........|+|++
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~---------------------g~-~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT---------------------KT-LTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC---------------------Cc-EEEcccCCCccCccEECCCC
Confidence 4566667889999977777766554 566667654 12 22233333223356899999
Q ss_pred CCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC--------CcEEEEECCCCCC
Q 018235 242 TGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKS 311 (359)
Q Consensus 242 ~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~ 311 (359)
..++++.+..+ .|++.++.. +.... ..+.+. ....|||++..++++.... ..|.+.|+.++
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r--lt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-- 359 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNS-GSVEQ--VVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-- 359 (419)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCeEe--CccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--
Confidence 85555554555 466667755 33221 112222 1248999999444444432 36788888775
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
....+.... .....+|+|+|+.+++.... +....|.+.+..
T Consensus 360 ~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~ 400 (419)
T PRK04043 360 YIRRLTANG-VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLN 400 (419)
T ss_pred CeEECCCCC-CcCCeEECCCCCEEEEEEcc-CCcEEEEEEecC
Confidence 234443322 23358999999998887543 223345555543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=58.10 Aligned_cols=35 Identities=46% Similarity=0.902 Sum_probs=33.3
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
..+.+|...|++|+|+|++. +|++|+.|++|+|||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 67899999999999999988 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-06 Score=71.57 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=107.1
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
++.+.+++++ .+.++.++...|..|.+.... ...+. ....-++.+++.+|+.... .+|
T Consensus 161 ~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~s-------------------ey~~~~~~a~t~D~gF~~S~s~~~~-~FA 219 (344)
T KOG4532|consen 161 QNSLHYSNDP-SWGSSVGDSRRVFRYAIDDES-------------------EYIENIYEAPTSDHGFYNSFSENDL-QFA 219 (344)
T ss_pred eeeeEEcCCC-ceEEEecCCCcceEEEeCCcc-------------------ceeeeeEecccCCCceeeeeccCcc-eEE
Confidence 8899999998 899999999999999998731 11222 3444566889999999998 999
Q ss_pred EEcCCCcEEEEecCCCCcceecC-ccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCCCceE-Ee-----ec
Q 018235 247 TGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGKSALT-SF-----KA 318 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~~~~~-~~-----~~ 318 (359)
++..||++.|||+|..+.+.... ..-..|.+.+..+.|+|.|.. +|.-.-.-+.+.+.|+|+...+.. .+ ..
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~ 299 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERK 299 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccc
Confidence 99999999999999865544211 223348899999999987753 344444457899999999833221 11 23
Q ss_pred CCC-CEEEEEEcCCCCeEEEE
Q 018235 319 HNA-DVNVISWNRCWLAVCWH 338 (359)
Q Consensus 319 h~~-~V~~i~~s~~~~~l~~~ 338 (359)
|.. .|..-.|+..+.-+...
T Consensus 300 ~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 300 HNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccccccccccccCCCcccccc
Confidence 433 37777888777654433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=79.37 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=107.3
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
...+.+..++.+ .++|.+.......++++...... .+++..+.... .-+++.+..... ..
T Consensus 63 ~a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~-----------------~kl~~~~~v~~-~~~ai~~~~~~~-sv 122 (390)
T KOG3914|consen 63 LAPALVLTSDSG-RLVAVATSSKQRAVFDYRENPKG-----------------AKLLDVSCVPK-RPTAISFIREDT-SV 122 (390)
T ss_pred ccccccccCCCc-eEEEEEeCCCceEEEEEecCCCc-----------------ceeeeEeeccc-Ccceeeeeeccc-eE
Confidence 344455566666 78888888888888888763210 22233332222 223444444444 33
Q ss_pred EEEcCC---CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCC
Q 018235 246 VTGDCN---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNA 321 (359)
Q Consensus 246 ~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~ 321 (359)
..+..- ..+.+|.... +. ...+.||-+.+.+|+|+|+.+ +++++..|..|||-..... ..+..+ -+|..
T Consensus 123 ~v~dkagD~~~~di~s~~~-~~----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADS-GR----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccc-cC----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHh
Confidence 333333 4455555433 22 256789999999999999998 9999999999999877765 444454 68999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|..|+.-++.. |+.+.. |++|++||..+|+
T Consensus 196 FVS~isl~~~~~-LlS~sG----D~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 196 FVSTISLTDNYL-LLSGSG----DKTLRLWDITSGK 226 (390)
T ss_pred heeeeeeccCce-eeecCC----CCcEEEEecccCC
Confidence 999999887655 444433 9999999999886
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-05 Score=74.93 Aligned_cols=115 Identities=13% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCceEEEEeCCCCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEE
Q 018235 229 KDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAI 303 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~i 303 (359)
.++|+++.|+|.++ .|+. |-.--.+.|+|++- .++ +.--.++-+++-|+|.|. +++.++ .-|.|-|
T Consensus 270 ~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~--~~v-----~df~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRG--KPV-----FDFPEGPRNTAFFNPHGN-IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCC-EEEEEEecccceEEEEcCCC--CEe-----EeCCCCCccceEECCCCC-EEEEeecCCCCCceEE
Confidence 57999999999997 5444 55667899999864 333 333467788999999999 666655 3588999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
||+.+. +.+..+.+..+ +.+.|+|+|+++++.... .+.|+-++||+...
T Consensus 341 wDv~n~-K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 341 WDVPNR-KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred Eeccch-hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999986 77777765544 556999999999887544 35588899998653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.2e-07 Score=80.22 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=78.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..|.-|.|..+...++.....++.|.+|++..+ .-...+..-.+.+.+++|||+|+.+|
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---------------------ew~ckIdeg~agls~~~WSPdgrhiL 107 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---------------------EWYCKIDEGQAGLSSISWSPDGRHIL 107 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc---------------------eeEEEeccCCCcceeeeECCCcceEe
Confidence 456667888877788888899999999999872 33345555667889999999998788
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (359)
.+...+-+|.+|.+.+..... +..-+..+..++|+|+|+ +.|.++
T Consensus 108 ~tseF~lriTVWSL~t~~~~~-----~~~pK~~~kg~~f~~dg~-f~ai~s 152 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYL-----LPHPKTNVKGYAFHPDGQ-FCAILS 152 (447)
T ss_pred eeecceeEEEEEEeccceeEE-----ecccccCceeEEECCCCc-eeeeee
Confidence 899999999999998743322 222234567899999998 655554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-06 Score=75.14 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=107.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-----CceEEEE
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAID 236 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~ 236 (359)
-.|+--||+|.++.+. ..+.+ +++-.|.+|++......+ .+.-++.|. .-|++..
T Consensus 169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF------------------nIVDiKP~nmeeLteVItSae 228 (460)
T COG5170 169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF------------------NIVDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce------------------EEEeccCccHHHHHHHHhhcc
Confidence 3689999999999887 44544 678899999998732111 122233443 2467888
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCccee------------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
|+|.....|.-.+..|.|++-|+|+..-+.. ....|.+-.++|.+++|+++|+ ++++-+. -+|+||
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEE
Confidence 9998877888888899999999996321110 0122334457899999999999 7776654 579999
Q ss_pred ECCCCCCceEEeecCC------------CCE---EEEEEcCCCCeEEEE
Q 018235 305 DTRVGKSALTSFKAHN------------ADV---NVISWNRCWLAVCWH 338 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~------------~~V---~~i~~s~~~~~l~~~ 338 (359)
|.+..+.|+.++.-|. ..| ..+.|+.+.+-++.+
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 9999878888886552 222 456788776655544
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.3e-07 Score=94.05 Aligned_cols=159 Identities=12% Similarity=0.198 Sum_probs=122.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~ 242 (359)
|-..|.|+.-+|.. -+.+||+.||.|++|.... ..++..+.. -...+..+.|+.+|.
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccC---------------------CCeEEEeeccCcchhhhhhhcccCC
Confidence 44667777778877 4677999999999999887 455555532 226889999999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCCCCceEEeecC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.+..++.||.+.+|.+.. ++. ...+.|.....+..|-- . ++++++ .++.+.+||.......-..-.+|
T Consensus 2265 -k~~i~d~dg~l~l~q~~p--k~~---~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2265 -KFGIVDGDGDLSLWQASP--KPY---TSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred -ceeeeccCCceeecccCC--cce---eccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeec
Confidence 999999999999999852 222 45567888888988865 3 677764 67889999987652211122889
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.++++++.|..++++.+.+ ++.+++||++.-.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr----~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGR----KGEVCLFDIRQRQ 2369 (2439)
T ss_pred CCCceEEEEcCcceEEEecCC----cCcEEEeehHHHH
Confidence 999999999999999998877 8999999987543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=85.38 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=109.6
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccc-cccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNA-LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
+.++++|.+..++++.+.++.|++||....... +...+..... ..... .........+|+++|++..++++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~------~g~~~--~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL------NGSSG--TSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC------CCCcc--ccccccCccEEEEeCCCCEEEEE
Confidence 468888855478888889999999998652111 1000000000 00000 00111234679999998745666
Q ss_pred EcCCCcEEEEecCCCCcceec---------CccccC--------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 248 GDCNSCIYLWEPASDATWNVD---------PNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~---------~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
-+.+++|++||+.+++..... ...+.. .-.....+++++++. ++++.+.++.|++||..++
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg- 835 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK- 835 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC-
Confidence 677789999998763321100 000100 011345789999998 9999999999999999875
Q ss_pred CceEEeecC--------------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 311 SALTSFKAH--------------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 311 ~~~~~~~~h--------------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+..+.+. -.....|+++++|.+++.+.. ++.|++|+..++.+
T Consensus 836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~----Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN----NSLIRYLDLNKGEA 892 (1057)
T ss_pred -eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC----CCEEEEEECCCCcc
Confidence 23333211 124678999999998877765 78999999988754
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-06 Score=83.62 Aligned_cols=158 Identities=10% Similarity=0.162 Sum_probs=108.4
Q ss_pred CCeEEEEEec-------CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 154 TPILQLRKVA-------HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 154 ~~~~~~~~~~-------H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
+|++....+. ....+.|++++- ..+|-|+-+|.|++++... .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6666655443 234566666654 6899999999999999876 33 3333
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC----CCCEEEEEeCCCcEE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT----EPDVFASCSVDGHIA 302 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----~~~~las~s~Dg~I~ 302 (359)
.|+.. ...|. +++||+.||+|.|-.+-+.... ..+ ...-++..|+++|+ ..-.|++|+.-| +.
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~----~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI----TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccc----eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EE
Confidence 45443 55677 9999999999998877653322 112 23468899999998 222789999888 77
Q ss_pred EEECCCCCCce-EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 303 IWDTRVGKSAL-TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 303 iwD~r~~~~~~-~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.-+..+... ..+....++|.+|+|. |.+++|+.. .-++++|..++.
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand-----~Gv~vyd~~~~~ 190 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND-----DGVKVYDTPTRQ 190 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEec--CcEEEEecC-----CCcEEEeccccc
Confidence 77655442221 2345667899999998 889999864 337888877654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.9e-06 Score=81.00 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=114.1
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|.-+|. +..++.+|...|+|.+-|.+. .+++++|..|++.+.+++. .|+ .|+|
T Consensus 180 v~imR~---Nnr~lf~G~t~G~V~LrD~~s---------------------~~~iht~~aHs~siSDfDv--~GN-lLit 232 (1118)
T KOG1275|consen 180 VTIMRY---NNRNLFCGDTRGTVFLRDPNS---------------------FETIHTFDAHSGSISDFDV--QGN-LLIT 232 (1118)
T ss_pred eEEEEe---cCcEEEeecccceEEeecCCc---------------------Cceeeeeeccccceeeeec--cCC-eEEE
Confidence 544444 337889999999999999988 6889999999998877666 565 8888
Q ss_pred EcC---------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc---eEE
Q 018235 248 GDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTS 315 (359)
Q Consensus 248 gs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~---~~~ 315 (359)
|+. |..|++||+|.-.. + .++.-+.++ .-+.|+|.-...+|.++..|...+.|..+...+ +..
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmra-l---~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~ 307 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRA-L---SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM 307 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhc-c---CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence 864 56678999987332 2 233333333 457899998889999999999999995443222 333
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+....+.+..+++++++..++++.. .+.|.+|-.+.
T Consensus 308 v~p~~s~i~~fDiSsn~~alafgd~----~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNGDALAFGDH----EGHVNLWADRP 343 (1118)
T ss_pred EccCCCcceeEEecCCCceEEEecc----cCcEeeecCCC
Confidence 4445666999999999999999877 78899997443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-05 Score=73.27 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=89.8
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
++++-..+|.|.+.|..+ .+.+..+......-..+.++|+++ ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 345667889999999987 566777765544444578999998 8888889999999999
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-------CCCEEEEEEcCCC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-------NADVNVISWNRCW 332 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-------~~~V~~i~~s~~~ 332 (359)
.+ .+.+ ..+.. .....++++||+|+.+++++...+.+.|+|.++. +++..+... .+.+..|..+|..
T Consensus 66 ~~-~~~v---~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 AT-GKVV---ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TS-SSEE---EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred Cc-ccEE---EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC
Confidence 87 4433 33332 3456889999999967777788999999999997 777776432 3467788888888
Q ss_pred CeEEEEee
Q 018235 333 LAVCWHLE 340 (359)
Q Consensus 333 ~~l~~~~~ 340 (359)
..+++...
T Consensus 140 ~~fVv~lk 147 (369)
T PF02239_consen 140 PEFVVNLK 147 (369)
T ss_dssp SEEEEEET
T ss_pred CEEEEEEc
Confidence 86665543
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-07 Score=76.28 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=66.5
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+.+++-+|....++++|+.||.+-+||.++...+ ...+..|+..++.|-|+|..+.-|.+|+.||++-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48899999998878999999999999999985333 3668899999999999999888999999999999999875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=69.75 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred CceeeEEEeCCCCcEEE-EEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 166 GCVNRIRAMTQNPHICA-SWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~la-t~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+.+...+|+|++..+++ +... ...|+++|+.. ++.. .+........+.+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~~-~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKKE-KIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcEE-EEecCCCcEEeeEECCCCC
Confidence 46778999999964444 3332 45688888865 2222 2222334455788999998
Q ss_pred CeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCCceEEeec
Q 018235 243 GRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 243 ~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~ 318 (359)
.++++.+.++ .|+++++.. +.. +.+..+........|+|+|..++++....+ .|.+.|+.++ . ...+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~-g~~----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~-~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNT-KTL----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S-VEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCC-CcE----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEeCcc
Confidence 5555655554 577778755 332 234434333345689999985555544444 4777788765 2 222321
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeeccc-----ceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMME-----HFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~-----d~~i~iwd~~~g~v 358 (359)
... . ...|+|+|+.+++....... ...|.+.+..+|..
T Consensus 319 ~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 319 HGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 111 1 24899999999887653211 14577777776653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0002 Score=66.87 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=105.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe---CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..-...-.-+.++|.+..+.++.. ..|.|..|.+...... ...+.........-..++.+
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 334556667889999844444433 3689999998762111 12222232223344579999
Q ss_pred CCCCCeEEEE-cCCCcEEEEecCCCCcceecCccc----------cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTG-DCNSCIYLWEPASDATWNVDPNPF----------IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|++. +|+++ -.+|.|.++++...+........+ ........++.|+|+++.++++.-....|++|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 55555 468999999998754432111111 11235578899999999666666667789999998
Q ss_pred CCCCce---EEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 308 VGKSAL---TSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 308 ~~~~~~---~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.....+ ..+ ....+....+.|+|+++++...... .+.|.+++..
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~ 222 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYD 222 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEE
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeec
Confidence 763222 222 2345668899999999988776553 5566666655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=75.16 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=116.1
Q ss_pred CCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccc------ccc-ccccccC--------------CCCCCCCCCCc
Q 018235 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNA------LAE-SETIVGQ--------------GAPQVSNQSPL 222 (359)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~------~~~-~~~~~~~--------------~~~~~~~~~~~ 222 (359)
...|+.|+|...+ ..-+...+.|.+|++|.+....-. +.. ......+ .....-...|.
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4568888887544 334445578999999998653111 000 0000000 00000112333
Q ss_pred EEe-cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc--eecCcc--ccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 223 VKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDPNP--FIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 223 ~~~-~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~~~--~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
+.+ ..|.--+.+++++.+.+ .++|++ |-.|.+|++...... ++.+.+ +..-+.-|++..|+|...++|.-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 344 56777889999999988 788776 889999998653221 111111 11223567888999998889999999
Q ss_pred CCcEEEEECCCCC-----CceEE--e--------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 298 DGHIAIWDTRVGK-----SALTS--F--------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 298 Dg~I~iwD~r~~~-----~~~~~--~--------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|.|+|-|+|... ..+.. + ..-.+.|..+.|+++|++++... -.+++|||.+..
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~ 311 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMA 311 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccc
Confidence 9999999999541 11111 1 11234578899999999988653 457999998764
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00012 Score=69.31 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=108.9
Q ss_pred cCCCceeeEEEeCCC-CcEEEE-----EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 163 AHQGCVNRIRAMTQN-PHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~-~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-|...|+.+.++|.. +..+|+ .+.-+.|+||.+...... ......+| -...-..+.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----------------~~~a~ksF--Fkadkvqm~ 224 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----------------QPVANKSF--FKADKVQMK 224 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----------------chhhhccc--cccceeEEE
Confidence 357888999999873 455655 566688999988741100 01111122 112223789
Q ss_pred eCCCCCCeEEEEcC--C---------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE--eCCCcEEE
Q 018235 237 WNPITTGRLVTGDC--N---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC--SVDGHIAI 303 (359)
Q Consensus 237 ~sp~~~~~l~sgs~--d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~i 303 (359)
|++.+.++|+..+. | .++++.++. +....+ ++. ..++|.|++|+|++. -|+.| -.=..+.|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V---~L~-k~GPVhdv~W~~s~~-EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSV---PLL-KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTI 298 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEE---ecC-CCCCceEEEECCCCC-EEEEEEecccceEEE
Confidence 99999886655443 3 367888776 234332 222 468999999999998 56554 45678999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|+|. .++..+ -.++=|++-|||+|.+++...- +...+.+-+||+..
T Consensus 299 fnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGF-GNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 299 FNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGF-GNLPGDMEVWDVPN 345 (566)
T ss_pred EcCCC--CEeEeC--CCCCccceEECCCCCEEEEeec-CCCCCceEEEeccc
Confidence 99997 566555 4667899999999998876542 22457799999865
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-05 Score=77.21 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC---
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT--- 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--- 241 (359)
..--+++.|+|+| +||-|+ ...|.+-|... .+.+.++..|...|+.+.|.|..
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p~ 70 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSPR 70 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCch
Confidence 3346788999998 777765 45788888876 56778888899999999998742
Q ss_pred --------CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CCCEEEEEeCCCcEEEEECCCCC
Q 018235 242 --------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 242 --------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.-+||+++..|.|.+||...... . ..+..|..+|.+++|-|. ...+|++-..-.+|.+|++.++
T Consensus 71 ~llS~~~~~lliAsaD~~GrIil~d~~~~s~-~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG- 145 (1062)
T KOG1912|consen 71 DLLSPSSSQLLIASADISGRIILVDFVLASV-I---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG- 145 (1062)
T ss_pred hccCccccceeEEeccccCcEEEEEehhhhh-h---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC-
Confidence 12789999999999999987332 2 457778899999999764 4458888888899999999998
Q ss_pred CceEEeecCCCCEEEEEEcCCCC
Q 018235 311 SALTSFKAHNADVNVISWNRCWL 333 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s~~~~ 333 (359)
..+...........|+.+.|...
T Consensus 146 ~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 146 EKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred ceeeccccCCcceeeeeeCCCCc
Confidence 66666655555677888888654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.8e-05 Score=70.01 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=107.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
++|.+.|.-.++..++ .-++.|..|| .+-|+|... ..+..+...-+.|.++..+++
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~----------------------~e~kr~e~~lg~I~av~vs~d 412 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG----------------------GEVKRIEKDLGNIEAVKVSPD 412 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC----------------------ceEEEeeCCccceEEEEEcCC
Confidence 4688888877777766 4677788888 899999887 234456666778999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC----CcEEEEECCCCCCceEEe
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~~~~~~~~ 316 (359)
|. .++.+.....|.+.|+.++ +.. ..-....+-|.+..|||++. +||-+--+ ..|+|+|+..+ .+..+
T Consensus 413 GK-~~vvaNdr~el~vididng-nv~---~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~--Kiy~v 484 (668)
T COG4946 413 GK-KVVVANDRFELWVIDIDNG-NVR---LIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGG--KIYDV 484 (668)
T ss_pred Cc-EEEEEcCceEEEEEEecCC-Cee---EecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCC--eEEEe
Confidence 98 8888887888999999884 432 11223457899999999999 88876544 56999999985 34444
Q ss_pred ecCCCCEEEEEEcCCCCeEEEE
Q 018235 317 KAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
....+-=.+-+|.|++++|.+-
T Consensus 485 TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 485 TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCcccccCcccCCCCcEEEEE
Confidence 3333334456899999877654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=75.56 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC---cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA---TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
....|+++.|...++ ++..|..+|.|...|+|... .|. ....-|.++|++++--......|.+.+.+|.|++|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~---a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC---AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc---eEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 455789999998887 99999999999999998741 232 22334899999988766333388888999999999
Q ss_pred ECCCCCCc---eEEeecCCCCEEEEEEc-----CCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSA---LTSFKAHNADVNVISWN-----RCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~---~~~~~~h~~~V~~i~~s-----~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|.|.- ++ +.++.+| ||..+.. +...+++.... |...+||..+.|.
T Consensus 327 D~R~~-K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~Gd----DcytRiWsl~~gh 379 (425)
T KOG2695|consen 327 DLRAT-KCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGD----DCYTRIWSLDSGH 379 (425)
T ss_pred eehhh-hcccceeeeecc---cccccccccccccccceEEEccC----eeEEEEEecccCc
Confidence 99987 55 6666777 3333333 33445544433 8889999988764
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-07 Score=88.72 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=98.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...-.|..+|+-|.-+.+|..++.+.+... ...+|++.. ...+.++|.. -.++.|
T Consensus 1137 ~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--------------------~~~~~Hsf~e----d~~vkF 1192 (1516)
T KOG1832|consen 1137 ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--------------------TGGPRHSFDE----DKAVKF 1192 (1516)
T ss_pred ccccccccccccccccCCcceeeeeccccCchHHHhcccc--------------------ccCccccccc----cceeeh
Confidence 445589999999999999965555544433 678999987 3567766654 447888
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+.... .-+.|.+.....|||+.+...+..-.....+....-+.+.|+|... ++. .|| .+||.|.. ..++.+.
T Consensus 1193 sn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~-~aIh~FD 1264 (1516)
T KOG1832|consen 1193 SNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIP-EAIHRFD 1264 (1516)
T ss_pred hhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccH-HHHhhhh
Confidence 87754 4444555567899999885433211112222333447889999998 554 344 48999987 6676664
Q ss_pred cCCCCEEEEEEcCCCCeEEEEee
Q 018235 318 AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+. --.-.|+|+|.-++....
T Consensus 1265 ~ft~-~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1265 QFTD-YGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred hhee-cccccccCCCceEEeech
Confidence 4442 223369999988876654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00017 Score=75.41 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc---ccc--ccc--ccc---cCCCCCC--------------CCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN---ALA--ESE--TIV---GQGAPQV--------------SNQ 219 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~---~~~--~~~--~~~---~~~~~~~--------------~~~ 219 (359)
-.+.|.+++|+|++ .++|..+.+|+|.+.......- .+. ..+ ..+ .+...+. ...
T Consensus 119 vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 36899999999999 7888888889998876443110 000 000 000 0000000 000
Q ss_pred CC---cEEecCCCCceEEEEeCCCCCCeEEEEcC---C---CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC
Q 018235 220 SP---LVKFGGHKDEGYAIDWNPITTGRLVTGDC---N---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 220 ~~---~~~~~~h~~~v~~l~~sp~~~~~l~sgs~---d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
.| ...+. +.+.-..|+|-.+|. ++|+.+. . ..|++|+-. +.......+ -.+--..++|-|.|.
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~---v~gLe~~l~WrPsG~- 269 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP---VDGLEGALSWRPSGN- 269 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC--ceEEecccc---CCCccCCccCCCCCC-
Confidence 11 11222 344566899999998 8887764 2 578999853 332211111 122234689999998
Q ss_pred EEEEEeC---CCcEEEEECCCCCCceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 291 VFASCSV---DGHIAIWDTRVGKSALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 291 ~las~s~---Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+||+... ...|.+|.-.....--+.+. .....|..|.||+++.+|+.... +. |++|-...
T Consensus 270 lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~----~~-vqLWt~~N 334 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE----DR-VQLWTRSN 334 (928)
T ss_pred EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec----CC-ceEEEeeC
Confidence 8888754 34566665333222222332 45667999999999999988764 22 88886543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00016 Score=67.60 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=109.2
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~ 244 (359)
....++.++|++..++++.-....|++|++......+ .+...+... ...-..+.|+|++...
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l-----------------~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL-----------------TPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE-----------------EEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE-----------------EEeeccccccCCCCcEEEEcCCcCEE
Confidence 4467899999997777776677899999998732111 111222222 2345689999999856
Q ss_pred EEEEcCCCcEEEEecCC-CCccee--cCcccc-C--CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce---EE
Q 018235 245 LVTGDCNSCIYLWEPAS-DATWNV--DPNPFI-G--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL---TS 315 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~-~~~~~~--~~~~~~-~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~---~~ 315 (359)
+++.-.++.|.++++.. .+.+.. ....+. + .......|.++|+++.++++.....+|.+|++......+ ..
T Consensus 207 Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 67777888999999872 222211 001110 1 123678999999999788888889999999994321222 23
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC--cCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC--SRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~--~~g~ 357 (359)
+.........+.++|+|++|+.+... .+.|.+|+. .+|.
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~---s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQD---SNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecC---CCeEEEEEEeCCCCc
Confidence 34444558999999999999987653 556777754 4554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=72.43 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=81.1
Q ss_pred EEEEeCCCCCCeEEEE----cCCCc----EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 233 YAIDWNPITTGRLVTG----DCNSC----IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sg----s~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
.++.||...+..+.|. +.+|. -++|++.. .+......+-....+.|.+++++|++. .|+.|+.||+|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-NKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-CceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEE
Confidence 4666766555455443 22333 24566643 221111122235778999999999999 99999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|.+.+ +.....+.-..+.++|+|+|.+++.+.. -+.+.+||....++
T Consensus 287 D~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~----qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSE----QGELQCFDMALSPI 333 (545)
T ss_pred EcCCC---eeeeeeecccceEEEEcCCCcEEEEEcC----CceEEEEEeecCcc
Confidence 99875 2223334556789999999999998876 68899999887765
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.1e-06 Score=74.82 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
++...+.+|...|..|+|||..+|+|..++.+..|+|.|+++ ...+ ..+..| ..+++++|.-++.+++.+|-.+|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~v---ssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVV---SSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceee---eheecc-CCceeeeeccCCcceeEEeccCc
Confidence 334466777888999999999999999999999999999987 3333 566667 88999999999999999999999
Q ss_pred cEEEEECCCCCCceEEe
Q 018235 300 HIAIWDTRVGKSALTSF 316 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~ 316 (359)
.|.|||+|....++..+
T Consensus 259 ~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eEEEEEccCCCchHhhh
Confidence 99999999875444444
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-05 Score=72.07 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=79.3
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
...+.++++..|.+++++|.. ..++.|+.||.|.+||.... +..+..+.-....++
T Consensus 251 vsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~-----------------------~t~~~ka~~~P~~ia 306 (545)
T PF11768_consen 251 VSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRG-----------------------VTLLAKAEFIPTLIA 306 (545)
T ss_pred EEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCC-----------------------eeeeeeecccceEEE
Confidence 446778999999999999998 78889999999999998762 122222233567899
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCC------------cceecCccccCCCCCeEEEEecCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDA------------TWNVDPNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~------------~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (359)
|+|+|. .+++|+..|.|.+||+.-.. +.......+..+......++|++...
T Consensus 307 WHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 307 WHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred EcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence 999998 99999999999999986421 11112233345666777788885543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00052 Score=64.37 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=84.6
Q ss_pred CCCCceEEEEeCCCCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcE
Q 018235 227 GHKDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHI 301 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I 301 (359)
.-.++|+..+|+|.+. .+++ |-..-.+.++|++.. . .+....+.-+.+-|+|.+. +++.++ .-|.|
T Consensus 272 ~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~lr~N--l-----~~~~Pe~~rNT~~fsp~~r-~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDLRGN--L-----RFYFPEQKRNTIFFSPHER-YILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccCC-ceeEEecccccceeecccccc--e-----EEecCCcccccccccCccc-EEEEecCCccccce
Confidence 5578999999999998 5544 457888999999862 2 2344455667788999999 555444 35789
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcCC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSRG 356 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~g 356 (359)
-|||....-.++..+.+.+. .-+.|+|+++++..+..+ .+.|+.++||++...
T Consensus 343 ~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 99998775233335544433 446899999999877544 345899999998654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.8e-05 Score=72.94 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=100.4
Q ss_pred EEecCCCceeeEEEeCC-------------CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 160 RKVAHQGCVNRIRAMTQ-------------NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~-------------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.+-.|.|.|.-..+.-. | .++|||+.||+|.|..+.+ .+...++.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~G-ey~asCS~DGkv~I~sl~~---------------------~~~~~~~d 110 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEG-EYVASCSDDGKVVIGSLFT---------------------DDEITQYD 110 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCC-ceEEEecCCCcEEEeeccC---------------------CccceeEe
Confidence 34457777776665444 4 7999999999999998876 23333343
Q ss_pred CCCCceEEEEeCCC----CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 227 GHKDEGYAIDWNPI----TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 227 ~h~~~v~~l~~sp~----~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
-+ .++.+++++|+ ...++++|+..| +.++.-+-.+.+. ...+....++|.+++|. |. ++|=++.+| |+
T Consensus 111 f~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~-lIAWand~G-v~ 182 (846)
T KOG2066|consen 111 FK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GN-LIAWANDDG-VK 182 (846)
T ss_pred cC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--Cc-EEEEecCCC-cE
Confidence 33 37889999987 334899999999 7777644333332 12345567899999995 44 888888776 89
Q ss_pred EEECCCCCCceEEeecCCC------CEEEEEEcCCCCeEE-EEee
Q 018235 303 IWDTRVGKSALTSFKAHNA------DVNVISWNRCWLAVC-WHLE 340 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~------~V~~i~~s~~~~~l~-~~~~ 340 (359)
+||+.+. +.+..+..... .-..+.|.+...+++ |+..
T Consensus 183 vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 183 VYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred EEecccc-ceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 9999986 44444422112 234678888776554 5543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-06 Score=83.83 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=111.5
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|....+|++|+-.. +.++.|+-.|.|++|++.+ +.......+|...++-+.-+.
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccC
Confidence 344688999999999877 7889999999999999988 555667889999999999999
Q ss_pred CCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 240 ITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 240 ~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
+|..+|.+++... ...+|+....+... +.|.+ -.++.|+.... .-+.|..-....|||+.+. .++.++
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~e----d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~-~~l~tylt 1224 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGPR---HSFDE----DKAVKFSNSLQ-FRALGTEADDALLYDVQTC-SPLQTYLT 1224 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCcc---ccccc----cceeehhhhHH-HHHhcccccceEEEecccC-cHHHHhcC
Confidence 9984454444444 46799987643332 44443 34678877654 2233333356889999998 555553
Q ss_pred --ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 317 --KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 --~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.+-.-|+..|||+..+++++.- +||.+.
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIlndGv---------LWDvR~ 1256 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLILNDGV---------LWDVRI 1256 (1516)
T ss_pred cchhhhhhccccccCCCcceEeeCce---------eeeecc
Confidence 122334488999999998887753 677664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00084 Score=60.53 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=108.5
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEe-C--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWA-D--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s-~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.++..+.+..+-+.++|.+. .+.++. . .|.|..|.+......+.. .-.....++ +-.-+
T Consensus 33 ~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~---------------ln~~~~~g~--~p~yv 94 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTF---------------LNRQTLPGS--PPCYV 94 (346)
T ss_pred hhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEE---------------eeccccCCC--CCeEE
Confidence 45567788888899999884 444443 3 688888888762111100 000111222 22678
Q ss_pred EeCCCCCCeEEEEc-CCCcEEEEecCCCCcceecCccccCCCCC----------eEEEEecCCCCCEEEEEe-CCCcEEE
Q 018235 236 DWNPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSAS----------VEDLQWSPTEPDVFASCS-VDGHIAI 303 (359)
Q Consensus 236 ~~sp~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~v~~sp~~~~~las~s-~Dg~I~i 303 (359)
+.+++++ +|+++. ..|.|.++-++..+.+.. ......|... +....+.|++. +++++. .--.|.+
T Consensus 95 svd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~ 171 (346)
T COG2706 95 SVDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFL 171 (346)
T ss_pred EECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence 9999998 666654 457899999977544321 1223335444 88899999999 555543 4456999
Q ss_pred EECCCCCC-ceE-EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKS-ALT-SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~-~~~-~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|++..+.- +.. ..-.-.+.-..|.|+|++++...-+. .+..|.+|....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E---L~stV~v~~y~~ 222 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE---LNSTVDVLEYNP 222 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec---cCCEEEEEEEcC
Confidence 99986521 111 11234566789999999997766554 267788887665
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=74.66 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=92.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe---cCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~ 230 (359)
...+..+...|+.+|+.+.|..+. ..+++ -||-|++||--. +.++... ..|..
T Consensus 773 tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFi---------------------gr~Laq~~dapk~~a 828 (1034)
T KOG4190|consen 773 TSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFI---------------------GRLLAQMEDAPKEGA 828 (1034)
T ss_pred cceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccc---------------------cchhHhhhcCcccCC
Confidence 556778888999999999998876 55654 479999999654 2222211 11222
Q ss_pred ceEEEEeCC--CCCCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNP--ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp--~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+..+..-+ +..-.++.|+...+|+++|.|. ..|....+.. .+....+.+++..|.|. .+|.+-.+|+|.+.|.
T Consensus 829 -~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 829 -GGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGN-KLAAALSNGCIAILDA 905 (1034)
T ss_pred -CceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcc-hhhHHhcCCcEEEEec
Confidence 22222222 2331344447788999999987 5555333333 44567899999999998 9999999999999999
Q ss_pred CCCCCceEEee
Q 018235 307 RVGKSALTSFK 317 (359)
Q Consensus 307 r~~~~~~~~~~ 317 (359)
|++ +.+-.+.
T Consensus 906 R~G-~vINswr 915 (1034)
T KOG4190|consen 906 RNG-KVINSWR 915 (1034)
T ss_pred CCC-ceeccCC
Confidence 998 5444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00037 Score=74.09 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=101.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc-ccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
-..|++.+++..++++-..++.|+++|+....- .+...+...... .......... -..-++++++|.+..+++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~-----~gg~~~~~~~-ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDY-----QGGKKGTSQV-LNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCC-----CCChhhhHhh-cCCCeEEEEecCCCeEEE
Confidence 356677776634555555667888888765211 111000000000 0000000000 012247899995543778
Q ss_pred EEcCCCcEEEEecCCCCccee-c----CccccC------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 247 TGDCNSCIYLWEPASDATWNV-D----PNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~-~----~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.+.++.|++|+...+ .... . .....+ .-.....|+|+|++..++++-+.++.|++||+.++...+..
T Consensus 700 ad~~~~~I~v~d~~~g-~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 700 AMAGQHQIWEYNISDG-VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EECCCCeEEEEECCCC-eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 8888899999998653 2110 0 000111 11345679999998868888888999999999875211100
Q ss_pred ------------eecC--------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 316 ------------FKAH--------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 316 ------------~~~h--------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+ -.....++++++|.+++.+.. ++.|++|+..++.+
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v 837 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRV 837 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeE
Confidence 0000 112357899999987777755 78899999877653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=57.85 Aligned_cols=168 Identities=10% Similarity=0.088 Sum_probs=98.5
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCC----
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT---- 241 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~---- 241 (359)
.=.+++|+|++ .++|.+...|+|++||+.......- .|...+.+ -...|-+|.|-...
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I----------------~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVI----------------PPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEEc----------------CcccccCCccccceeeeEeeccccccc
Confidence 45678999999 8999999999999999985221111 11111111 12244455553322
Q ss_pred -CCeEEEEcCCCcEEEEecCCC--CcceecCcc--ccC-CCCCeEEEEecCCCCCEEEEEe-CCC----------cEEEE
Q 018235 242 -TGRLVTGDCNSCIYLWEPASD--ATWNVDPNP--FIG-HSASVEDLQWSPTEPDVFASCS-VDG----------HIAIW 304 (359)
Q Consensus 242 -~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~--~~~-h~~~V~~v~~sp~~~~~las~s-~Dg----------~I~iw 304 (359)
...|+.-...|.++-|-+..+ .... .... |.. +...|+++.|+|.+. +|+.|+ ... -+.-|
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~-e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaW 185 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQ-ENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAW 185 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcce-eeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEE
Confidence 125666667887776665321 1110 0112 222 467999999999998 555543 221 25556
Q ss_pred ECCCCC----------C---------ceEEe---------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 305 DTRVGK----------S---------ALTSF---------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 305 D~r~~~----------~---------~~~~~---------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+-... . .+..+ ......|..|+.+|+|.+|++-.- .+.|.+|++-.-
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~----sG~lsLW~iPsL 261 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF----SGSLSLWEIPSL 261 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc----CCeEEEEecCcc
Confidence 543320 0 00000 112456899999999999987765 788999997654
Q ss_pred c
Q 018235 357 E 357 (359)
Q Consensus 357 ~ 357 (359)
.
T Consensus 262 ~ 262 (282)
T PF15492_consen 262 R 262 (282)
T ss_pred h
Confidence 3
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.001 Score=61.95 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=96.3
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
.+|...|.-..+..+.+ -++.|..|| .+-|+|... +.. ..+...-+.|.++..+|+|+ .++.+.....|-+.
T Consensus 356 v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-~e~----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vi 428 (668)
T COG4946 356 VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-GEV----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVI 428 (668)
T ss_pred cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-ceE----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEE
Confidence 36666777777777777 788899999 899999976 332 34566778999999999999 78888888889999
Q ss_pred ECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|+.++ . +..+ +...+-|..+.|+|++++++.+.-.+-.-..|+++|+..+.+
T Consensus 429 didng-n-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 429 DIDNG-N-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EecCC-C-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99997 3 3333 445667999999999999998865433345689999887654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0014 Score=68.67 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=104.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
+..+.....+-.|--..++|.|.| ++||+.-. ...|.+|.-+... .+.....+.....
T Consensus 245 eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr------------------hgeF~l~~~~~~~ 305 (928)
T PF04762_consen 245 EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR------------------HGEFTLRFDPEEE 305 (928)
T ss_pred CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE------------------eeeEecCCCCCCc
Confidence 444555544555666678999999 78887553 3445555544310 1121111223445
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC---
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR--- 307 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r--- 307 (359)
.+..|.||+++. .||..-.| .|.+|-..+ -.|..+..........+..+.|+|..+..|...+.+|.+..+++.
T Consensus 306 ~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~N-YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 306 KVIELAWNSDSE-ILAVWLED-RVQLWTRSN-YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred eeeEEEECCCCC-EEEEEecC-CceEEEeeC-CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 789999999998 88887644 499999866 455433222223334455599999888777777776666554332
Q ss_pred -CCC-----------------------------CceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 308 -VGK-----------------------------SALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 308 -~~~-----------------------------~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+. .|+... -...+.|+.++|++.+..++.-.. ++.|.+|..
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~----d~~l~~~~~ 455 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS----DGSLSIYEW 455 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC----CCCEEEEEe
Confidence 110 011101 123578999999999876555444 666777763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0042 Score=56.14 Aligned_cols=162 Identities=10% Similarity=0.123 Sum_probs=102.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc----------eEEEEeC
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE----------GYAIDWN 238 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s 238 (359)
+-+++++++..++++--..|.|.++-+...... .+...+..|... ++...+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l------------------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL------------------QPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcc------------------ccceeeeecCCCCCCccccCCccceeeeC
Confidence 678888888545555456789999998774211 111112223333 7789999
Q ss_pred CCCCCeEEEEcCC-CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|+++ +|++.+-. -.|.+|++.. +...........-...-.-|.|||+++...+.+--+++|-+|........+..++
T Consensus 154 P~~~-~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 154 PDGR-YLVVPDLGTDRIFLYDLDD-GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CCCC-EEEEeecCCceEEEEEccc-CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 9998 77777532 3689999975 4322111111233456677999999995555666799999999887422232222
Q ss_pred cC---------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 318 AH---------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 318 ~h---------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+ ......|..+++|++|..+.+. ...|-++.+
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg---~dsI~~f~V 273 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG---HDSIAVFSV 273 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCC---CCeEEEEEE
Confidence 11 3346778999999999877653 445555543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0021 Score=61.46 Aligned_cols=165 Identities=10% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCC---CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
-...+..-+|+|.+..+....-.. ..++++++... ....+..+.++. ...+|+|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-------------------~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG-------------------KRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC-------------------ccceeeccCCcc---CCccCCCC
Confidence 345666778999885544443322 35888998872 122333444544 47899999
Q ss_pred CCCeEEEEcCCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 241 TTGRLVTGDCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
++.++++...||...|| |+... . . ..+..-.+.-..-.|+|+|..+..+.+..|.-.||-..........+..
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~-~-~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGK-N-L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCC-c-c---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 99777788888875555 55442 2 2 1233222222356899999977677777777666644433233344433
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
....-..-.|+|+|..+++.....+ ...|.+.+..++
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g-~~~i~~~~~~~~ 360 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGG-QWDIDKNDLASG 360 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCC-ceeeEEeccCCC
Confidence 3322236789999999998874322 233555555444
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=8e-06 Score=78.19 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=110.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe----CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA----DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
-+|....++++|++-..+++|.|- .+..+.|||+....... ...+.+.- +-.....+++|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP---------------ke~~~fs~-~~l~gqns~cw 162 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP---------------KESPLFSS-STLDGQNSVCW 162 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC---------------cccccccc-ccccCcccccc
Confidence 367889999999998767787764 35778999998743211 11222211 22334558999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE-CCCCCCceEEe
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTSF 316 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~r~~~~~~~~~ 316 (359)
-.+.+ ++++|.....++++|+|.... +...-.+..|..+...|...+++++-. ||.|.+|| .|.-..++..+
T Consensus 163 lrd~k-lvlaGm~sr~~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 163 LRDTK-LVLAGMTSRSVHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred ccCcc-hhhcccccchhhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH
Confidence 97777 899999899999999985221 111223456677888896665887766 99999999 55554455444
Q ss_pred ecCC----CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHN----ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~----~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.... ..+..++|+|...-++..+. +.-.+|+++++.
T Consensus 236 ~~~~N~~~~~l~~~aycPtrtglla~l~--RdS~tIrlydi~ 275 (783)
T KOG1008|consen 236 LRNENKKPKQLFALAYCPTRTGLLAVLS--RDSITIRLYDIC 275 (783)
T ss_pred hhCCCCcccceeeEEeccCCcchhhhhc--cCcceEEEeccc
Confidence 2122 23889999997765444332 124667777654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=65.76 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=88.4
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
-+-++|+|.| .+++|-...| |.+|--.. -..+..| .|. .+.-++|||... +|+|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEE
Confidence 3567899999 7888866655 77886544 1222333 243 467788999887 8887
Q ss_pred Ec----------CC-CcEEEEecCCCCcceecCccccC--CCCCe-EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 248 GD----------CN-SCIYLWEPASDATWNVDPNPFIG--HSASV-EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 248 gs----------~d-g~I~lwd~~~~~~~~~~~~~~~~--h~~~V-~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
=+ ++ ..|+|||+++ |... +.|.. ....+ .-..||.++. ++|.-.. .+|.|++..+. .++
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~t-G~lk---rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf-~ll 339 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIAT-GLLK---RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSF-MLL 339 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccc-cchh---cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCce-eee
Confidence 43 23 4699999998 4433 33332 22222 3368999998 7766555 67999998764 222
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEE
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~ 337 (359)
-.-.-.-+.|...+|+|.+.+|++
T Consensus 340 d~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred cccccCCccccCcccCCCcceEEE
Confidence 111223456888999999887763
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=62.93 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=122.4
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
..+....|..-|.+.....-.|+.++-.|.|+.... .|+ +...+. .-.|+++.+.. .
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~--------~y~---~f~~~~-~~~i~~~~l~~---g-------- 228 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKL--------AYV---SFELGG-CPRIYYLDLNT---G-------- 228 (425)
T ss_pred CceEEEEccCCcceeEecccCcceeccccCcCCCce--------EEE---EEecCC-CceEEEEeccC---C--------
Confidence 344555555577777778888999999999986211 222 222211 13566666620 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (359)
+.+++ ..+ .+.-..-+|+|+|..++.+...+|...||-+....
T Consensus 229 ---------------------------~~~~i-~~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~------ 271 (425)
T COG0823 229 ---------------------------KRPVI-LNF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG------ 271 (425)
T ss_pred ---------------------------cccee-ecc---CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC------
Confidence 12222 223 33334458999998888888888887666554421
Q ss_pred cccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
+....+..-.+.-..=.|+|+|..+..+.+..|.-.||-....+.-. +.+......-..-.|+
T Consensus 272 --------------~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~S 334 (425)
T COG0823 272 --------------KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWS 334 (425)
T ss_pred --------------CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCC
Confidence 11222322222222668999999666777777765555443322222 1222222222267899
Q ss_pred CCCCCEEEEEeC-CCc--EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 286 PTEPDVFASCSV-DGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 286 p~~~~~las~s~-Dg~--I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
|+|. .|+..+. +|. |.+.|+.++.. .....+......-+|.+++..++.....
T Consensus 335 pdG~-~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 335 PDGD-KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCC-EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEeccC
Confidence 9999 6666553 344 67777776522 2332333444456788888888776544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=66.06 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCCcEEecCCCCc-eEEEEeCCCC------CCeEEEEcCCCcEEEEecCCCCcceecCcc-ccCCCCCeEEEEecCCCCC
Q 018235 219 QSPLVKFGGHKDE-GYAIDWNPIT------TGRLVTGDCNSCIYLWEPASDATWNVDPNP-FIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 219 ~~~~~~~~~h~~~-v~~l~~sp~~------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~ 290 (359)
++.+..+..|... +..+ .|+. ...-+.|-.+..++.||+|..+..++.... .........|++-+.+|
T Consensus 514 GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-- 589 (794)
T ss_pred CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc--
Confidence 5666677666642 4333 3321 124556667889999999985543321111 11234566777776666
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.||.||.+|.||||| +.+......+.+...+|..|..+.+|++|+.++. ..|.+++
T Consensus 590 ~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-----tyLlLi~ 645 (794)
T PF08553_consen 590 YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-----TYLLLID 645 (794)
T ss_pred eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-----ceEEEEE
Confidence 699999999999999 4443444445788899999999999999999885 3455555
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=68.55 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-----------ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-----------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
...++.|+.... ++|.|+.||.+++-.+.+... -+.--+++.||..+|.-+.|+.+.+ -|-|...+|
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 577999998875 999999999999987754210 0111256889999999999999888 888999999
Q ss_pred cEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEee
Q 018235 300 HIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.|.+|-+-.+.-+-.-+ ....+-|.+++|+.+|.-++....
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence 99999988873222112 345667899999999998776654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0033 Score=59.12 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=95.4
Q ss_pred CCceeeEEEeCCC-CcEEEEE-----eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 165 QGCVNRIRAMTQN-PHICASW-----ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...|....++|.+ ...||.+ +..+.++||.+.. ..++.+-.--......|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 4566777778764 2234553 5678899999875 23333222223345688999
Q ss_pred CCCCCeEEEEcC----------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEEC
Q 018235 239 PITTGRLVTGDC----------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDT 306 (359)
Q Consensus 239 p~~~~~l~sgs~----------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~ 306 (359)
+.|..+|+-.-. ...++|++++. .... ....-.++|.+.+|.|.+. -|+.++ ....+.++|+
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~----V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIP----VEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDL 305 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecc-cccc----eeccccccceeeeecccCC-ceeEEecccccceeeccc
Confidence 998843332211 24577888764 2221 1225678999999999988 666655 6888999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.. . .+..-.+.=|.+.|+|.+.+++...- +..-+.+-+|+..
T Consensus 306 r~N--l--~~~~Pe~~rNT~~fsp~~r~il~agF-~nl~gni~i~~~~ 348 (561)
T COG5354 306 RGN--L--RFYFPEQKRNTIFFSPHERYILFAGF-DNLQGNIEIFDPA 348 (561)
T ss_pred ccc--e--EEecCCcccccccccCcccEEEEecC-CccccceEEeccC
Confidence 974 2 22233444566778888777665321 1122345566543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0044 Score=58.96 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEcC---CCcEEEEecCC-CCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC---NSCIYLWEPAS-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~---dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
.-|+-.+. -...+.+.+|-|.|. .+++-+. ..++.+|-+.+ ...+.. +..+ .+...+.|.|+|.|..+.+.
T Consensus 436 dIpve~ve-lke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~l-Vk~~--dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 436 DIPVEVVE-LKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPSL-VKEL--DKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred CCCceeee-cchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchhh-hhhh--cccccceEEEcCCCcEEEEE
Confidence 45555443 356889999999998 6655432 35788898874 223221 1222 23567889999999944333
Q ss_pred --EeCCCcEEEEECCCCCCceE-EeecCCCCEEEEEEcCCCCeEEEEeeecc--cceEEEEEeCc
Q 018235 295 --CSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNRCWLAVCWHLEVMM--EHFLFMILDCS 354 (359)
Q Consensus 295 --~s~Dg~I~iwD~r~~~~~~~-~~~~h~~~V~~i~~s~~~~~l~~~~~~~~--~d~~i~iwd~~ 354 (359)
+|..|.+.++|+.-. .... ....|- ..+-+.|.|.|+++++.....+ .++-.+||...
T Consensus 511 ~l~s~~g~l~F~D~~~a-~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYA-DLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecccccceEEEecchh-hhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 356889999998853 2211 123343 3677899999999988765542 25556777654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=64.94 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=90.6
Q ss_pred eEEEEEecCCCceeeEEEeCCC-----------CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQN-----------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~-----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
+++..+..|+..|+.|+|.|.. ..++|++...|.|.+||+.. ...+.-
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~---------------------~s~~~~ 104 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL---------------------ASVINW 104 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh---------------------hhhhhh
Confidence 3434555688999999998753 24788899999999999987 455566
Q ss_pred ecCCCCceEEEEeCCC---CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 225 FGGHKDEGYAIDWNPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
+..|..++..++|-+. .+..|+.-....+|.+|+..+++.. ..+........|+.+.|.....|..-+..|.+
T Consensus 105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~----Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF----WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee----eccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 7778888888988543 3346777777889999999885432 23333445677788899766566655666666
Q ss_pred EEEECC
Q 018235 302 AIWDTR 307 (359)
Q Consensus 302 ~iwD~r 307 (359)
-+.+.-
T Consensus 181 l~~~~l 186 (1062)
T KOG1912|consen 181 LSCKDL 186 (1062)
T ss_pred EEEecc
Confidence 666543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=2.4e-05 Score=75.07 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=104.0
Q ss_pred CceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
..+.|+++.-.. .-+++.|..+|.|.+-.++..- ...-....+|...+++++|++.....
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------dSs~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------DSSAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------cccceecccccccccccccccccHHH
Confidence 445555554433 2588999999999999887621 11123455778899999999987768
Q ss_pred EEEEc----CCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 245 LVTGD----CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 245 l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
||.|- .|..+.|||+.+.-........|.+ -....+.++|-.+.+ ++.+|...+.++++|+|........+ .
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 88873 4678999999863111000112222 345667899998888 99999999999999999641222222 1
Q ss_pred CCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+..+..+...| ...+++.. . ++.+.+||.
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~-~----dg~iAiwD~ 224 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSN-S----DGDIAIWDT 224 (783)
T ss_pred hhhcccceecCCCCCceecc-c----cCceeeccc
Confidence 22344456666 34454433 2 667888883
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00071 Score=61.76 Aligned_cols=83 Identities=7% Similarity=0.079 Sum_probs=71.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..|...|..++|+|....++..++.+..|.|.|+.+ ...+.++..| ..+++.+|..+.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet---------------------~~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET---------------------SCVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccc---------------------ceeeeheecc-CCceeeeeccCC
Confidence 357788999999999856888899999999999998 4556667777 689999999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcce
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWN 266 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~ 266 (359)
..+|..|...|.|.+||++....+.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchH
Confidence 8899999999999999999865544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0083 Score=53.05 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCC--------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 164 HQGCVNRIRAMTQNPHICASWADT--------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....|.+++.|+| ++.+|.... |.|..++... + +..+.......++|
T Consensus 84 ~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~----------------------~-~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 84 PFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG----------------------K-VTVVADGLGFPNGI 139 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----------------------E-EEEEEEEESSEEEE
T ss_pred ccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC----------------------e-EEEEecCcccccce
Confidence 34678999999999 677775543 4455555542 1 11122223356799
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc---cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+|+|++..++++-+..+.|..+++...+..+...+.+ .......-.+++..++. ++++....+.|.++|.. + +.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-~~ 216 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-KL 216 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S-CE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c-cE
Confidence 9999998455677888899999987533311111222 22223467799999998 88888899999999988 4 56
Q ss_pred eEEeecCCCCEEEEEEc-CCCCeEEEE
Q 018235 313 LTSFKAHNADVNVISWN-RCWLAVCWH 338 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s-~~~~~l~~~ 338 (359)
+..+......+++++|. ++...|...
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 66665444578999994 565555444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=66.94 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE-EEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY-AIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~ 242 (359)
-...|-++.|+|.- .++|++..+|.|.+..+.. ..+.++..|..++. +++|.|+|.
T Consensus 19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~----------------------qRlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW----------------------QRLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred cccceEEEEEcCcc-chhheeccCCcEEEEEecc----------------------ceeEeccCCCCccceeeeecCCCC
Confidence 35678889999988 7999999999999998875 44677776777777 999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (359)
.||.|-.||+|++.|+.+++... .........|.++-|+|
T Consensus 76 -llaVg~kdG~I~L~Dve~~~~l~---~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 -LLAVGFKDGTIRLHDVEKGGRLV---SFLFSVETDISKGIWDR 115 (665)
T ss_pred -EEEEEecCCeEEEEEccCCCcee---ccccccccchheeeccc
Confidence 99999999999999998854432 11222456777788864
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00051 Score=66.11 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeE-EEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
...+.-+.|+|.-. ++|.+.++|.|-+..++...- .++.-|...|+ +++|.|+|+ +||.|-.||+|+|.|+.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRl-----wtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRL-----WTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecccee-----EeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEcc
Confidence 34688999999998 999999999998887764222 23443455555 999999999 99999999999999999
Q ss_pred CCCCceEEe-ecCCCCEEEEEEcC
Q 018235 308 VGKSALTSF-KAHNADVNVISWNR 330 (359)
Q Consensus 308 ~~~~~~~~~-~~h~~~V~~i~~s~ 330 (359)
++ ..+... ..-..+|.++-|.+
T Consensus 93 ~~-~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KG-GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CC-Cceeccccccccchheeeccc
Confidence 98 444442 33456788888874
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=41.49 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.+...+..|...+.++.|++.+. ++++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45667778899999999999886 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.019 Score=59.59 Aligned_cols=181 Identities=12% Similarity=0.179 Sum_probs=99.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc---ccc----cccccccc-----------CCCCCCCCCCCcEEec
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL---NAL----AESETIVG-----------QGAPQVSNQSPLVKFG 226 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~---~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~~ 226 (359)
.+.|.++.|+|++ .++|-.+..+++.+-.....+ +.+ ...+..+. +..++.....+....+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 5789999999999 777777777888766542210 111 00000000 0000000001110000
Q ss_pred ------CCCCceEEEEeCCCCCCeEEE-----EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE
Q 018235 227 ------GHKDEGYAIDWNPITTGRLVT-----GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 227 ------~h~~~v~~l~~sp~~~~~l~s-----gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (359)
-|. .=..+.|--+|. ++|+ ...-..|++||-. +.......+ ...--.+++|-|.|. ++|+-
T Consensus 188 ~~~~~~~~~-~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE--g~Lns~se~---~~~l~~~LsWkPsgs-~iA~i 259 (1265)
T KOG1920|consen 188 ALEQIEQDD-HKTSISWRGDGE-YFAVSFVESETGTRKIRVYDRE--GALNSTSEP---VEGLQHSLSWKPSGS-LIAAI 259 (1265)
T ss_pred cccchhhcc-CCceEEEccCCc-EEEEEEEeccCCceeEEEeccc--chhhcccCc---ccccccceeecCCCC-eEeee
Confidence 111 123699999998 7777 3323789999965 222100011 112234689999998 88875
Q ss_pred e---CCCcEEEEECCCCCCc--eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 296 S---VDGHIAIWDTRVGKSA--LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 296 s---~Dg~I~iwD~r~~~~~--~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
. .|+.|.++.-.....- ...+......|..++||.++.+|+..... .+...|++|-...
T Consensus 260 q~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~-~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN-LENSLVQLWTTGN 323 (1265)
T ss_pred eecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecc-cccceEEEEEecC
Confidence 3 4667888875432111 11223334448999999999998874432 2245588886543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00094 Score=61.84 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=112.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
..+..|.+.|..++.+-++ .+++|.+. |..++++|+.... .+..++----+. .+.|
T Consensus 47 KhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~D---------------------minmiKL~~lPg-~a~w 103 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFD---------------------MINMIKLVDLPG-FAEW 103 (558)
T ss_pred hhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccc---------------------hhhhcccccCCC-ceEE
Confidence 4555788999999999988 88999887 9999999987621 110011001111 2222
Q ss_pred C-CCC-C-C-eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCc
Q 018235 238 N-PIT-T-G-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSA 312 (359)
Q Consensus 238 s-p~~-~-~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~ 312 (359)
. ..| . . +-++.-.+|.|.++|-....+.. ...-.-|.++|..+.++|.+. .+.|....|.|.-|..... +.+
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCc
Confidence 1 111 0 0 33344557899999987644332 122234999999999999998 8888888999999987731 111
Q ss_pred -------------eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 -------------LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 -------------~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+....+...++.|+|++..+..-.. +..|+++...+|.+
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~----DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP----DRKVRGFVFKTGKL 235 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCc----ccEEEEEEeccchh
Confidence 1112233456788999999988765443 88899999998875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.046 Score=48.29 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=90.8
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC-CCCCCeEEEE
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN-PITTGRLVTG 248 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l~sg 248 (359)
++.|.+....++++-...+.|+.|+.... ....+.... ..++.+. +++ .|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~g--~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPDG--RLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTTS--EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccCC--EEEEE
Confidence 56788844488888888999999998772 122222222 5677777 553 56666
Q ss_pred cCCCcEEEEecCCCCcceecCccc-cC-CCCCeEEEEecCCCCCEEEEEeCC--------CcEEEEECCCCCCceEEeec
Q 018235 249 DCNSCIYLWEPASDATWNVDPNPF-IG-HSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~~~~~~~~ 318 (359)
... .+.++|+.+ ++........ .. .....+++++.|+|. ++++.... |.|..++.. + + +..+..
T Consensus 58 ~~~-~~~~~d~~~-g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~ 131 (246)
T PF08450_consen 58 DSG-GIAVVDPDT-GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVAD 131 (246)
T ss_dssp ETT-CEEEEETTT-TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEE
T ss_pred EcC-ceEEEecCC-CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-e-EEEEec
Confidence 644 456668876 4332111111 12 346789999999998 88877644 456667766 3 3 233333
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.-...|.|+|+|+++.|.+.... .+.|..++..
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~ 164 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLD 164 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETT---TTEEEEEEEE
T ss_pred CcccccceEECCcchheeecccc---cceeEEEecc
Confidence 34557999999999977655432 3445555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.17 Score=47.12 Aligned_cols=114 Identities=8% Similarity=0.044 Sum_probs=72.1
Q ss_pred CC-CCCCeEEEEcCCCcEEEEecCCCCcce-ecCcc--c-----cCCCCCeEEEEecCCCCCEEEEEe---------CCC
Q 018235 238 NP-ITTGRLVTGDCNSCIYLWEPASDATWN-VDPNP--F-----IGHSASVEDLQWSPTEPDVFASCS---------VDG 299 (359)
Q Consensus 238 sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~-~~~~~--~-----~~h~~~V~~v~~sp~~~~~las~s---------~Dg 299 (359)
.+ ++. ++..... |+|.+-|+....... ..... + ......+.-++++|++..+++... ..+
T Consensus 202 ~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 44 665 5544443 999999964321100 00011 1 113445556999999986666442 225
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCcc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.++|+.+. +.+..+.. ...+..|+++|+++ .|..... ..+.|.+.|..++++
T Consensus 280 ~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~---~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 280 FLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALST---GDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCC---CCCcEEEEECcCCeE
Confidence 7999999987 66666643 45789999999999 5554443 266799999988754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.032 Score=51.45 Aligned_cols=121 Identities=11% Similarity=0.070 Sum_probs=74.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.......|+|+++... .+ .++++. .+.|++|++.... . ..+...+..+. .+.++...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~-~-----------------l~~~~~~~~~~-~i~sl~~~ 138 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSK-T-----------------LLKKAFYDSPF-YITSLSVF 138 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTS-S-----------------EEEEEEE-BSS-SEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcc-c-----------------chhhheecceE-EEEEEecc
Confidence 4455678999999988 34 455544 3899999998721 0 11222222222 55555554
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+. +++.|+.-..+.++..+........ ..-......+.++.|-+++. .++.+..+|.|.++...
T Consensus 139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KN-YILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TT-EEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred --cc-EEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 44 8999999899988865542221210 11122345688899987775 89999999999999776
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.029 Score=56.32 Aligned_cols=158 Identities=10% Similarity=0.104 Sum_probs=97.2
Q ss_pred EEEecCCCc-eeeEEEeCCCCcEEEEEeCCC-----cEEEEECCCCccccccccccccCCCCCCCCCCCc---EEe--cC
Q 018235 159 LRKVAHQGC-VNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKF--GG 227 (359)
Q Consensus 159 ~~~~~H~~~-V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 227 (359)
.-+.+|... |.-+....+. +++++.++|+ .|+||++....... +...+ ..+ ..
T Consensus 58 ~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~---------------sP~c~~~~ri~~~~n 121 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNN---------------SPQCLYEHRIFTIKN 121 (933)
T ss_pred ehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCC---------------CcceeeeeeeeccCC
Confidence 444455555 4444433333 6777766665 48999998731110 01111 111 11
Q ss_pred --CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecC--C-CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 228 --HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA--S-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 228 --h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~--~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
...++.+|+.|.+-. .+|.|-.+|.|.++.-. . .+.. ..-...-..+|+.+.+.-++..+ +-+..-..|.
T Consensus 122 p~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr---~~~~~~~~~pITgL~~~~d~~s~-lFv~Tt~~V~ 196 (933)
T KOG2114|consen 122 PTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSR---QDYSHRGKEPITGLALRSDGKSV-LFVATTEQVM 196 (933)
T ss_pred CCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccc---eeeeccCCCCceeeEEecCCcee-EEEEecceeE
Confidence 234678888888876 89999999999887422 1 1111 11222345799999999888853 2333445789
Q ss_pred EEECCCCCCceE-EeecCCCCEEEEEEcCCCC-eEEEE
Q 018235 303 IWDTRVGKSALT-SFKAHNADVNVISWNRCWL-AVCWH 338 (359)
Q Consensus 303 iwD~r~~~~~~~-~~~~h~~~V~~i~~s~~~~-~l~~~ 338 (359)
+|.+... .+.. .+..|+.+++|.++++... +++.+
T Consensus 197 ~y~l~gr-~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 197 LYSLSGR-TPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred EEEecCC-CcceeeeccCCccceeeecCCCCccEEEec
Confidence 9998854 3444 4688999999999998766 44443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.006 Score=57.90 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEcCCCcEEEEecCCCCcceecCccccCC----CCCeEEEEecCCC
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQWSPTE 288 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~~ 288 (359)
++.+..+..|.. |.-+++.|+..+ .-+.|=.+..|+-||+|..+.-.. ..-.+| .....|.+- ++
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl--~~~q~kqy~~k~nFsc~aT--T~ 440 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL--AVVQSKQYSTKNNFSCFAT--TE 440 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee--eeeeccccccccccceeee--cC
Confidence 566666666665 666677776543 123355588899999997554111 111222 223344443 34
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.-.+|.||.+|-|||||- .+......+.+...+|..|.-+.+|++|+.++.
T Consensus 441 sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 448999999999999997 442444456888999999999999999998875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.004 Score=60.85 Aligned_cols=140 Identities=11% Similarity=0.146 Sum_probs=93.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|.--++...+ .+++.|+..|.|++|+-... ........+-...+..+..|+... ++|
T Consensus 35 ~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~--------------------~~~~~~~~~~~~~~~~~~vs~~e~-lvA 92 (726)
T KOG3621|consen 35 RVKLTCVDATE-EYLAMGSSAGSVYLYNRHTG--------------------EMRKLKNEGATGITCVRSVSSVEY-LVA 92 (726)
T ss_pred eEEEEEeecCC-ceEEEecccceEEEEecCch--------------------hhhcccccCccceEEEEEecchhH-hhh
Confidence 33333444445 78999999999999987662 111222333344566778888887 899
Q ss_pred EEcCCCcEEEEecCCCCcce-ecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC---CCceEEeecCCC
Q 018235 247 TGDCNSCIYLWEPASDATWN-VDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---KSALTSFKAHNA 321 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~-~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---~~~~~~~~~h~~ 321 (359)
.|+..|.|.++.++.....- .-..++. .|+..|++++|++++. -+.+|...|.|.+--+... ....+.+..-.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 99999999999887632211 0012222 3788999999999999 9999999999998877662 112333444455
Q ss_pred CEEEEEEc
Q 018235 322 DVNVISWN 329 (359)
Q Consensus 322 ~V~~i~~s 329 (359)
.|-.|...
T Consensus 172 ~IVQlD~~ 179 (726)
T KOG3621|consen 172 EIVQLDYL 179 (726)
T ss_pred ceEEeecc
Confidence 66666544
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0034 Score=63.03 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCC---------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..++++..|.+.|..+.. +| ++++|++.. .-|+|||++... ...|+..
T Consensus 208 ~~iht~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr------------------al~PI~~-- 264 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR------------------ALSPIQF-- 264 (1118)
T ss_pred ceeeeeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhh------------------ccCCccc--
Confidence 445788899999987655 56 677777654 456889988621 1233322
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+.++ .-+.|+|.-..+++.+++.|...+-|..+-+.+.....-+....+.+...++|+++. .+|.+..+|.|.+|--
T Consensus 265 -~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 265 -PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 2222 357888887779999999999999996543443322222333445689999999999 9999999999999974
Q ss_pred C
Q 018235 307 R 307 (359)
Q Consensus 307 r 307 (359)
+
T Consensus 342 ~ 342 (1118)
T KOG1275|consen 342 R 342 (1118)
T ss_pred C
Confidence 4
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=38.06 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWD 194 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd 194 (359)
..+..|...|+++.|.+.+ .++++++.+|.|++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4555899999999999988 7899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=66.11 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=77.7
Q ss_pred EEEeCCCCCCeEEEEcC----CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGDC----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-.+|+|..+ +|+.++- .|+|-||-- + +.+-.. .++. -.+.++||||..- +||.|-.-|.+.+|...+.
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfad-t-GEPqr~-Vt~P---~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFAD-T-GEPQRD-VTYP---VHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEec-C-CCCCcc-cccc---eehhhhccChHHH-HHhhccccceeEEEecCCc
Confidence 357888888 7777653 477877742 3 332211 1122 2345699999987 9999999999999998874
Q ss_pred CCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 310 KSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 310 ~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
...++ ..|..+|..+.|+++|..++...+ .+.+.+|..
T Consensus 92 --e~htv~~th~a~i~~l~wS~~G~~l~t~d~----~g~v~lwr~ 130 (1416)
T KOG3617|consen 92 --ETHTVVETHPAPIQGLDWSHDGTVLMTLDN----PGSVHLWRY 130 (1416)
T ss_pred --eeeeeccCCCCCceeEEecCCCCeEEEcCC----CceeEEEEe
Confidence 33444 679999999999999999988766 778888864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0023 Score=63.71 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=60.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.+++++|+|.. .++|.|=..|.+.+|.... .+.-.....|..++..|+||++|. .|+
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~---------------------~e~htv~~th~a~i~~l~wS~~G~-~l~ 117 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT---------------------TETHTVVETHPAPIQGLDWSHDGT-VLM 117 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC---------------------ceeeeeccCCCCCceeEEecCCCC-eEE
Confidence 34569999988 8899999999999999876 233344567999999999999998 999
Q ss_pred EEcCCCcEEEEecC
Q 018235 247 TGDCNSCIYLWEPA 260 (359)
Q Consensus 247 sgs~dg~I~lwd~~ 260 (359)
|++.-|.+++|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999775
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.084 Score=47.69 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=102.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEE----EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICAS----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
..+.+|- .|+++|..+++| .+..|.|-|||.... -..+..|..|.-.-+.
T Consensus 50 RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--------------------~~ri~E~~s~GIGPHe 103 (305)
T PF07433_consen 50 RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARG--------------------YRRIGEFPSHGIGPHE 103 (305)
T ss_pred CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCC--------------------cEEEeEecCCCcChhh
Confidence 4556664 899999655555 344689999999851 3455667777666677
Q ss_pred EEeCCCCCCeEEEEc------------------CCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEE
Q 018235 235 IDWNPITTGRLVTGD------------------CNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 235 l~~sp~~~~~l~sgs------------------~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las 294 (359)
|.|.|+++ .|+.+- .+-++.+-|..+ +..+ ....+ .-|..++.-+++.+++. +++.
T Consensus 104 l~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll-~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a 179 (305)
T PF07433_consen 104 LLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALL-EQVELPPDLHQLSIRHLAVDGDGT-VAFA 179 (305)
T ss_pred EEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-Ccee-eeeecCccccccceeeEEecCCCc-EEEE
Confidence 88899886 555542 122233333333 3322 12234 34778899999999987 5554
Q ss_pred EeCCC-------cEEEEECCCCCCceEEe-------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 295 CSVDG-------HIAIWDTRVGKSALTSF-------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 295 ~s~Dg-------~I~iwD~r~~~~~~~~~-------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+-..| .|.+++... .+..+ .....-+-+|++++++.+++.++-. .+++.+||..+|.+
T Consensus 180 ~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 180 MQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATGRL 251 (305)
T ss_pred EecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCCCE
Confidence 43222 133333222 12222 2234568899999999988777653 78899999998874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0046 Score=57.41 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=110.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.-|...|+.+..... .++.+++.||.++.|--..-. -...+..|..|...+.+|+-+.++
T Consensus 6 ymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDG 65 (558)
T ss_pred hcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccc
Confidence 347777776665543 599999999999999754310 123455677888899999999999
Q ss_pred CCeEEEEcC-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCCCCc-eEEee
Q 018235 242 TGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVGKSA-LTSFK 317 (359)
Q Consensus 242 ~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~~~~-~~~~~ 317 (359)
. ++.|++. |..++++|+.+..-... ..+.--...++.+ .+|... .+-++.-.++.|.|+|-+....+ ...-.
T Consensus 66 ~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 W-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred e-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 8 8899777 99999999876322210 1111122233222 233321 13333446899999999986323 33447
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-|.++|.++.+++.+..++.... .+.|..|.+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~----~gmVEyWs~e 174 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDI----SGMVEYWSAE 174 (558)
T ss_pred cccCceEEEEeeccccceeeccc----cceeEeecCC
Confidence 89999999999999887776644 5678888765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.22 Score=50.28 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=99.5
Q ss_pred CeEE--EEEecC-----CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 155 PILQ--LRKVAH-----QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 155 ~~~~--~~~~~H-----~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
|.+. ++..+| +.++..++++.+- ..+|.|..+|.|..+.-+-... .+........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RD-----------------rgsr~~~~~~ 169 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRD-----------------RGSRQDYSHR 169 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhc-----------------cccceeeecc
Confidence 5554 455554 3567888888876 7899999999999885432100 1111122222
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
-..+|++|.+..++...+..+ .-..|.+|.+.. ..+. ...+..|..+++|..+++....+++ |+ ...|.+||..
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~g-r~p~--~~~ld~~G~~lnCss~~~~t~qfIc-a~-~e~l~fY~sd 243 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSG-RTPS--LKVLDNNGISLNCSSFSDGTYQFIC-AG-SEFLYFYDSD 243 (933)
T ss_pred CCCCceeeEEecCCceeEEEE-ecceeEEEEecC-CCcc--eeeeccCCccceeeecCCCCccEEE-ec-CceEEEEcCC
Confidence 345899999998888433333 356799999874 3333 2457778899999999987663443 33 3569999988
Q ss_pred CCCCceEEee-cCCCCEEEEEEcCCCCeEEEEee
Q 018235 308 VGKSALTSFK-AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 308 ~~~~~~~~~~-~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.. ++...+. +|.-.+ -|...|.+++....
T Consensus 244 ~~-~~cfaf~~g~kk~~---~~~~~g~~L~v~~~ 273 (933)
T KOG2114|consen 244 GR-GPCFAFEVGEKKEM---LVFSFGLLLCVTTD 273 (933)
T ss_pred Cc-ceeeeecCCCeEEE---EEEecCEEEEEEcc
Confidence 65 5666665 665443 34444555555433
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=57.65 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=76.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.+.--++..... +++.|+.-|.+++|.-.. +... ..+..+..+.+..++.|++.. ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~-~~~~--~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHT-GEMR--KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCc-hhhh--cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 333334555666 999999999999998654 3322 244445556677788899888 99999999999999887652
Q ss_pred CceEE----e-ecCCCCEEEEEEcCCCCeEEEEee
Q 018235 311 SALTS----F-KAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 311 ~~~~~----~-~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.+-.. . ..|...|++++|++++..+..+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 21111 1 347889999999999998887765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=39.15 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=67.3
Q ss_pred eeeEEEeC---CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 168 VNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 168 V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
|++++++. ++.+-|+.|++|..|++|+-.. .+..+.- ...+.+|.-... ++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------~~~Ei~e-~~~v~~L~~~~~--~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------IVAEITE-TDKVTSLCSLGG--GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------EEEEEec-ccceEEEEEcCC--CE
Confidence 55666654 4457888899999999998554 3344433 346677766655 37
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC---CCCCEEEEEeCCCcEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCSVDGHIA 302 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s~Dg~I~ 302 (359)
|+.|-.+|+|-+|+-.. ..|.+ - .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~~-RlWRi----K--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRSQ-RLWRI----K--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCcc-eeeee----c--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99999999999998754 44542 1 223355555443 3444688888888764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.052 Score=55.41 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=66.4
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
-...|-.+..++.||.+...+.+- ......+ .......|++-+ +.|+||.|+.+|.|+|||-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v---------------~~~~k~Y-~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV---------------DSQSKQY-SSKNNFSCFATT--EDGYIAVGSNKGDIRLYDR 605 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee---------------ecccccc-ccCCCceEEEec--CCceEEEEeCCCcEEeecc
Confidence 345567788899999986211100 0001111 122244555554 4458999999999999994
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
. +... ...+.+-..+|..|..+.+|..+||||- ..|.|+++
T Consensus 606 -~-g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 606 -L-GKRA--KTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -c-chhh--hhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 3 2221 2456677899999999999997777774 46777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.11 Score=50.36 Aligned_cols=124 Identities=10% Similarity=0.194 Sum_probs=76.0
Q ss_pred CCCCceEEEEeCCCCCC---eEEEEcCCCcEEEEecCCC----CcceecCccccCCCCC--eEEEEecCCCCCEEEEEeC
Q 018235 227 GHKDEGYAIDWNPITTG---RLVTGDCNSCIYLWEPASD----ATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~---~l~sgs~dg~I~lwd~~~~----~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~ 297 (359)
|.-..|+++.|.|.+.. .|++.-....|.+|.+... +++......-.+-.-+ -..+.|||... +|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence 45567899999987321 4555556888999988631 2333211100011111 13468999998 7776655
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...=.+++++.....+..=....+.|.|.+|.++|..|+.+..+ --.-.|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS---sLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS---SLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC---eEEEEEecCc
Confidence 55445677776533332212356679999999999988877653 4456788753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.15 Score=53.38 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=93.7
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+.|.++.|..+. +-++.+...|.|.+-|... .+......-...|.+++|||+.. .+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et----------------------~~~eivg~vd~GI~aaswS~Dee-~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPET----------------------LELEIVGNVDNGISAASWSPDEE-LL 124 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccc----------------------cceeeeeeccCceEEEeecCCCc-EE
Confidence 567788887777 5555667889999887665 22222222344889999999998 88
Q ss_pred EEEcCCCcEEEEec----CCC----------C-----cceecCccccCCC---------------------CCeEEEEec
Q 018235 246 VTGDCNSCIYLWEP----ASD----------A-----TWNVDPNPFIGHS---------------------ASVEDLQWS 285 (359)
Q Consensus 246 ~sgs~dg~I~lwd~----~~~----------~-----~~~~~~~~~~~h~---------------------~~V~~v~~s 285 (359)
+-.+..+++.+-+- -.. + .|-.....|.|.. +.=..|+|-
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence 88887777765432 110 0 0111011122110 111348999
Q ss_pred CCCCCEEEEE-----eCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 286 PTEPDVFASC-----SVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 286 p~~~~~las~-----s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-+|. +||+. ..-+.|+|||.. + . +... ..-..-=.+++|-|.|..++.-....+ +..|.++.-+
T Consensus 205 gDg~-~fAVs~~~~~~~~RkirV~drE-g-~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 205 GDGE-YFAVSFVESETGTRKIRVYDRE-G-A-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred cCCc-EEEEEEEeccCCceeEEEeccc-c-h-hhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 9998 77772 233789999977 3 1 1111 111222356899998888776554333 3356666543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.13 Score=47.86 Aligned_cols=105 Identities=9% Similarity=-0.071 Sum_probs=67.0
Q ss_pred CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc---------CCCcEEEEe
Q 018235 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD---------CNSCIYLWE 258 (359)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs---------~dg~I~lwd 258 (359)
++|.+.|... .+.+.++..-..+- .+ .||++..++++.+ .+..|.+||
T Consensus 27 ~~v~ViD~~~---------------------~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 27 TQVYTIDGEA---------------------GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred ceEEEEECCC---------------------CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 8999999987 34444443322222 24 9999984445555 588999999
Q ss_pred cCCCCcceecCc----cccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEEee
Q 018235 259 PASDATWNVDPN----PFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 259 ~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+.+ .+....+. +..........++++|+|+.++++--. +..|.+.|+.++ +.+..+.
T Consensus 84 ~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~ 145 (352)
T TIGR02658 84 PQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMD 145 (352)
T ss_pred Ccc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEe
Confidence 987 33331100 000012334578999999955545534 899999999997 6666664
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.27 Score=47.38 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...-....+.++|.+ +.++. +.+|.-.|+.... .+. . . .+.+....|++.
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~-k-~---~G~g~~~vw~~~-- 79 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN-K-A---FGSGLSFVWSSR-- 79 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE-E-E---EEE-SEEEE-TS--
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc-c-c---cCceeEEEEecC--
Confidence 344567899999999 55555 5568888887332 111 1 1 234567899983
Q ss_pred CeEEEEcCCCcEEEE-ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLW-EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
+.+|+-...++|.|+ ++.. .. . ..+. ....+..|-. |. +|+..+.+ .|.+||..++ +.+.++...
T Consensus 80 n~yAv~~~~~~I~I~kn~~~-~~-~---k~i~-~~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~-~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKN-EV-V---KSIK-LPFSVEKIFG---GN-LLGVKSSD-FICFYDWETG-KLIRRIDVS-- 145 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE--T-T---------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---
T ss_pred ccEEEEECCCeEEEEEcCcc-cc-c---eEEc-CCcccceEEc---Cc-EEEEECCC-CEEEEEhhHc-ceeeEEecC--
Confidence 378888888999996 4432 11 0 1122 1124555533 66 66666554 8999999997 677777533
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
+|..+.|++++.+++..+.
T Consensus 146 ~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S
T ss_pred CCcEEEEECCCCEEEEEeC
Confidence 3899999999999887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.79 Score=40.54 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=87.2
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE--ecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s 238 (359)
+.+-...+..|.|+|+...++|+....+.|..++... +.+.. +.+. .-.-+|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~-~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGF-GDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS--SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCC-CCceeEEEE
Confidence 3345567999999998768999989999998888654 33333 3442 356688887
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcce--e-----cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC--C
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWN--V-----DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--G 309 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~--~-----~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~ 309 (359)
-.+. ++++--.++.+.++++......+ . .......+...++.|+|+|.+..+|+ +-.....+|+.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC
Confidence 6665 55555568999999884422111 0 00111135567999999999884554 45666677776664 2
Q ss_pred CCceEEe--------ecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEe
Q 018235 310 KSALTSF--------KAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 310 ~~~~~~~--------~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd 352 (359)
...+... ......+..++++|... +++.+.. ...|..+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d 199 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----SRLLLELD 199 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT----TTEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECC----CCeEEEEC
Confidence 1222111 12445688999998754 4444433 44455555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.4 Score=42.08 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCCCc--EEEEECCCCCCceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 287 TEPDVFASCSVDGH--IAIWDTRVGKSALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 287 ~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+..++++-..++. |+++++..+ .....+.. -.+.|..+...+.+..+.+...+.-.+..+..+|..+++.
T Consensus 335 ~~~~Lvl~~~~~~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 335 FKDYLVLSYRENGSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETTEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCEEEEEEEECCccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44445666555554 777888822 33333322 2334677777788888888877777788899999988864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.9 Score=41.17 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=90.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCc-EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 167 CVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
....++.+|..+..+|.+-.-|+ ..+||......... ....+-..|.|| -.||+++. +|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------------~~a~~gRHFyGH------g~fs~dG~-~L 65 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------------LWAPPGRHFYGH------GVFSPDGR-LL 65 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------------EcCCCCCEEecC------EEEcCCCC-EE
Confidence 34457778866677888777776 46888876211000 011223345555 46899998 77
Q ss_pred EEE-----cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE-Ee----------------CCCcEEE
Q 018235 246 VTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS-CS----------------VDGHIAI 303 (359)
Q Consensus 246 ~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las-~s----------------~Dg~I~i 303 (359)
++. +..|.|-|||...+-..+ ..|..|.-.-..+.|.|+++++++. |+ .+-++.+
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri---~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRI---GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEE---eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE
Confidence 765 335899999997422222 4566666666778899999644433 22 1234455
Q ss_pred EECCCCCCceEE--e--ecCCCCEEEEEEcCCCCeEEEE
Q 018235 304 WDTRVGKSALTS--F--KAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 304 wD~r~~~~~~~~--~--~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.|.+++ ..+.. + .-|.-.|..++++++|..++..
T Consensus 143 ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 143 LDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred EecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 566665 33333 3 3366779999999998766543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.1 Score=46.01 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
....|..+..||++. +||+...+|.|.||++-+. ......
T Consensus 228 ~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL-~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL-RLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc-hhhccc
Confidence 457899999999999 9999999999999999876 444444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.1 Score=39.75 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+..-.|++...+ .++++--.++.+.++++............ ..-.+.....+....-+|+|++.+. .
T Consensus 64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~N~G~EGla~D~~~~-~ 131 (248)
T PF06977_consen 64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADV----------QKISLGFPNKGNKGFEGLAYDPKTN-R 131 (248)
T ss_dssp -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEE----------EEEE---S---SS--EEEEEETTTT-E
T ss_pred CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhc----------eEEecccccCCCcceEEEEEcCCCC-E
Confidence 4678889998777 56665556899999998552211110000 0000011122445688999999987 5
Q ss_pred EEEEcCCCcEEEEecCC--C-Ccce-ecCcc---ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 245 LVTGDCNSCIYLWEPAS--D-ATWN-VDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~--~-~~~~-~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
|+.+-...-..||.++. . .... ..... .......+.+++++|...++++.....+.|.++| +.+ +++..+
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G-~~~~~~~ 209 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQG-RVVSSLS 209 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCC-CEEEEEE
Confidence 65665565666766643 1 1111 00011 1123456789999999887999999999999999 444 444443
Q ss_pred -ec--CC-----CCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 317 -KA--HN-----ADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 317 -~~--h~-----~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
.. |. ...-.|+|.++|.+.+.+ . ++.+..+
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E----pNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E----PNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE-T----TTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc-C----CceEEEe
Confidence 22 11 235679999999877766 2 5555443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.025 Score=35.96 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
...|..++|||... +||.++.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 35699999999999 99999999999999984
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.99 Score=39.13 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC----------e-EEEEecCCCCCEEEEEeCCCc-EEEEECCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS----------V-EDLQWSPTEPDVFASCSVDGH-IAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V-~~v~~sp~~~~~las~s~Dg~-I~iwD~r~ 308 (359)
+. .++.+..++.|..+|+++ ++.+ ..+...... + ..+.+. .+ .+..++.++. +.+ |+.+
T Consensus 122 ~~-~~~~~~~~g~l~~~d~~t-G~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GD-RLYVGTSSGKLVALDPKT-GKLL---WKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TT-EEEEEETCSEEEEEETTT-TEEE---EEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT
T ss_pred cC-EEEEEeccCcEEEEecCC-CcEE---EEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC
Confidence 44 777787799999999988 4432 112111111 1 222332 33 4555666664 666 9999
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+ ..+.... ...+..+ ....+..++.... ++.+.+||.++|++
T Consensus 193 g-~~~w~~~--~~~~~~~-~~~~~~~l~~~~~----~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 G-EKLWSKP--ISGIYSL-PSVDGGTLYVTSS----DGRLYALDLKTGKV 234 (238)
T ss_dssp T-EEEEEEC--SS-ECEC-EECCCTEEEEEET----TTEEEEEETTTTEE
T ss_pred C-CEEEEec--CCCccCC-ceeeCCEEEEEeC----CCEEEEEECCCCCE
Confidence 7 4443333 2223332 3455666665554 78899999999975
|
... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=53.55 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred CceeeEEEeCCCCcE-EEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE---ecCCCCceEEEEeCCCC
Q 018235 166 GCVNRIRAMTQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK---FGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~sp~~ 241 (359)
-.|+.+...++.... +...+.+-.|..||+......... ...|+.. ......-+.++.|+|.-
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-------------~~~pl~~s~ts~ek~vf~~~~~wnP~v 167 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-------------TTVPLKNSATSFEKPVFQLKNVWNPLV 167 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------hccccccccchhccccccccccccCCc
Confidence 456666666765222 222333446888999873321100 0112111 11111234578999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee----
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---- 317 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---- 317 (359)
.-..+.+..|+.|++..+... ...+ .. ..-+..+++++|+|.|. -++.|-..|++.=|-..-. ....+.
T Consensus 168 p~n~av~l~dlsl~V~~~~~~-~~~v--~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~le--ik~~ip~Pp~ 240 (1405)
T KOG3630|consen 168 PLNSAVDLSDLSLRVKSTKQL-AQNV--TS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLE--IKSEIPEPPV 240 (1405)
T ss_pred cchhhhhccccchhhhhhhhh-hhhh--cc-cCcccceeeEEeccccc-eeeEecCCCeEEEeecccc--eeecccCCCc
Confidence 877888888999999887652 2221 22 23456789999999999 8888999999887754432 112221
Q ss_pred cCCCCEEEEEEcCCCCeEEE
Q 018235 318 AHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~ 337 (359)
.....|.+|+|-....++++
T Consensus 241 ~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCcceeEEEEecceeEEEE
Confidence 11467999999887776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.49 Score=44.57 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
.+..++.+|.++.||... ++.+...... ...... ..+. .++.++.+|.|+.+|.
T Consensus 243 ~vy~~~~~g~l~a~d~~t---------------------G~~~W~~~~~--~~~~p~--~~~~-~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRS---------------------GRVLWKRDAS--SYQGPA--VDDN-RLYVTDADGVVVALDR 296 (377)
T ss_pred EEEEEEcCCEEEEEECCC---------------------CcEEEeeccC--CccCce--EeCC-EEEEECCCCeEEEEEC
Confidence 455567788899999876 3333332211 111111 1233 7888888999999999
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.+ ++.+-....+.+. .+..... .+. .+++++.+|.|+++|.+++ +.+.++..+...
T Consensus 297 ~t-G~~~W~~~~~~~~--~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~ 352 (377)
T TIGR03300 297 RS-GSELWKNDELKYR--QLTAPAV--VGG-YLVVGDFEGYLHWLSREDG-SFVARLKTDGSG 352 (377)
T ss_pred CC-CcEEEccccccCC--ccccCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence 77 3322111111111 1111111 244 7888899999999999987 667677655543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.034 Score=47.50 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=61.9
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC--EEEEEeCCCcEEEEECCCCCCceEEeecCC-
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHN- 320 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~las~s~Dg~I~iwD~r~~~~~~~~~~~h~- 320 (359)
.++.|+.+|.|.+|..+..+... ..+..-...|.++ -|.+.. +..+++.||.||.|.+.-. +.+-....|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNF 145 (238)
T ss_pred eEEeecccceEEEecCCccchHH---Hhhhcccccceec--cccccccceeEEeccCCceeeeccccC-ceeeeeccccC
Confidence 78899999999999987433321 1121222233322 244433 8888999999999998876 5555555666
Q ss_pred CCEEEEEEcCCCCeEEEE-eeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWH-LEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~-~~~~~~d~~i~iwd~~ 354 (359)
.++..+..+..++++... .. .+..++.|++.
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S---~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTS---HDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCceEEeeccc---cchhhhhcchh
Confidence 455555555555555443 22 25667777653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.15 Score=48.74 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=78.5
Q ss_pred CeEEEEEecCCCceeeEEEeCCCC------cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNP------HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~------~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (359)
.+++....-|.. |+-+.+.|+.. .--..|-.+..|+-||.+-+.. ..+..-.+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------------------~kl~~~q~k 425 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------------------NKLAVVQSK 425 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-------------------ceeeeeecc
Confidence 334334433443 77777777651 1123356788899999886321 112222233
Q ss_pred CC--ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 229 KD--EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 229 ~~--~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.- .-..-++.-.+.|++|.||.+|-|+|||- .+..- ...+.+-..+|.-|..+.+|..+|+|| +..+.|.|+
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRA---KTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhh---hhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 21 11122334456679999999999999996 42222 245778889999999999999667666 456777766
Q ss_pred CC
Q 018235 307 RV 308 (359)
Q Consensus 307 r~ 308 (359)
+-
T Consensus 500 ~~ 501 (644)
T KOG2395|consen 500 LI 501 (644)
T ss_pred ec
Confidence 53
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.82 Score=43.71 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=68.6
Q ss_pred eeeEEEeCCCCcEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCC
Q 018235 168 VNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~ 242 (359)
+..+.++|++..++++.+..| .|+++|+.+ ++.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t---------------------g~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET---------------------GKFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT---------------------TEEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC---------------------CcCcCCcccc--cccceEEEeCCCC
Confidence 335678999965665655555 499999987 22221 1211 1222499999988
Q ss_pred CeEEEEcCC----------CcEEEEecCCCCcceecCccccCCCC-C-eEEEEecCCCCCEEEEEeCCCc---EEEEECC
Q 018235 243 GRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHSA-S-VEDLQWSPTEPDVFASCSVDGH---IAIWDTR 307 (359)
Q Consensus 243 ~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~-~-V~~v~~sp~~~~~las~s~Dg~---I~iwD~r 307 (359)
+++.+...+ ..|++|.+-+...-- ...|..... . ...+..++++..++++.....+ +.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 666665333 237778775532210 122333222 2 5688999999966766655444 7888888
Q ss_pred CC
Q 018235 308 VG 309 (359)
Q Consensus 308 ~~ 309 (359)
..
T Consensus 261 ~~ 262 (414)
T PF02897_consen 261 DG 262 (414)
T ss_dssp CT
T ss_pred cc
Confidence 63
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.73 Score=40.43 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=75.7
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeEEEEcCCC
Q 018235 174 MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLVTGDCNS 252 (359)
Q Consensus 174 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~sgs~dg 252 (359)
.++...+++.|+..+.+.--|... ++... ..-+-.-+..++- .+. +++.|...|
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~s---------------------G~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~g 73 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQS---------------------GNLIWEAILGVRIECSAIV---VGD-FVVLGCYSG 73 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCC---------------------CcEEeehhhCceeeeeeEE---ECC-EEEEEEccC
Confidence 344446777788888887777766 22221 1112222344444 344 788899999
Q ss_pred cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcC
Q 018235 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (359)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~ 330 (359)
.+++.+.+++.+. ..|..-..--...+..+++. ++..++.|+..+..|.++. .++...+--.+-..+-+.++
T Consensus 74 ~lYfl~~~tGs~~----w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 74 GLYFLCVKTGSQI----WNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cEEEEEecchhhe----eeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC
Confidence 9999999885332 12222111112234577888 9999999999999999987 66666543333222333444
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.4 Score=41.78 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=101.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.-+.+.+++.+..+.++...++.|.+.|... ..... ...+. .-..+++++++....
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~vG~--~P~~~~~~~~~~~vY 131 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIPVGL--GPVGLAVDPDGKYVY 131 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEeeecc--CCceEEECCCCCEEE
Confidence 3456778888867888878889999999655 12111 22222 556899999997344
Q ss_pred EEEc--CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE------ee
Q 018235 246 VTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS------FK 317 (359)
Q Consensus 246 ~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~~ 317 (359)
++-. .++++.+.|..+ ..... ..+.+- .+ ..++++|++..++++-..++.|.+.|.... .+.. +.
T Consensus 132 V~n~~~~~~~vsvid~~t-~~~~~--~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~~ 204 (381)
T COG3391 132 VANAGNGNNTVSVIDAAT-NKVTA--TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLVG 204 (381)
T ss_pred EEecccCCceEEEEeCCC-CeEEE--EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceeccccccccc
Confidence 4444 367888888766 33331 223332 23 889999999966777778999999997764 2221 22
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
... .-..+.+++++..+...... ..++.+...+...+.
T Consensus 205 ~~~-~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~ 242 (381)
T COG3391 205 VGT-GPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGN 242 (381)
T ss_pred cCC-CCceEEECCCCCEEEEEecc-CCCceEEEEeCCCce
Confidence 222 24567899999976665442 113466666666554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.21 Score=50.25 Aligned_cols=138 Identities=11% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC--CC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PI 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~ 240 (359)
-...||-|+...-+ ..+|+.+.+||.|.+|....-...+............ ....+|.+.+.- ...+++|+++ ..
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~-r~~i~P~f~~~v-~~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFS-RLKIKPFFHLRV-GASAWGLDIHDYKK 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccc-cccCCCCeEeec-CCceeEEEEEecCc
Confidence 44568888776544 4689999999999999875422111111000000000 012456666654 3388999998 66
Q ss_pred CCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCC--CC---EEEEEeCCCcEEEEEC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTE--PD---VFASCSVDGHIAIWDT 306 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~--~~---~las~s~Dg~I~iwD~ 306 (359)
.+ +||.+++...|.||-+... .+.. ...-..|...|.+|+|-++. .. .+++++-.|.+-+|++
T Consensus 177 ~r-lIAVSsNs~~VTVFaf~l~~~r~~--~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SR-LIAVSSNSQEVTVFAFALVDERFY--HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ce-EEEEecCCceEEEEEEeccccccc--cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66 8898998888988866542 1111 11122366789999998765 22 6777888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.066 Score=55.17 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=66.2
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.|++.|.|...|+... ..|...-..-..+|.+++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 56888899999999998872 233222223345899999999998 999999999999999
Q ss_pred cCCCCcceecCccccCCCCCeEEE---EecCCCCCEEEEEeCCCc
Q 018235 259 PASDATWNVDPNPFIGHSASVEDL---QWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v---~~sp~~~~~las~s~Dg~ 300 (359)
+.. ++.. +.+..|..++..+ .|...+. .+.++..-|+
T Consensus 159 ~~~-~k~l---~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 159 MHR-AKIL---KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred ccC-Ccce---eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc
Confidence 977 4443 4454455444443 3433444 6666666664
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.84 Score=43.00 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=59.8
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.++.+|.|..+|... ++.+..+........+... .+. .++.++.+|.++.+|
T Consensus 66 ~~v~v~~~~g~v~a~d~~t---------------------G~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald 121 (377)
T TIGR03300 66 GKVYAADADGTVVALDAET---------------------GKRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALD 121 (377)
T ss_pred CEEEEECCCCeEEEEEccC---------------------CcEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEE
Confidence 3566677889999999876 3444333322211111211 233 788888899999999
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecC--CCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSP--TEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
..+ ++..-. ..+. ..+. -+| .+. .++.++.++.|..||.+++ +.+..+
T Consensus 122 ~~t-G~~~W~-~~~~---~~~~---~~p~v~~~-~v~v~~~~g~l~a~d~~tG-~~~W~~ 171 (377)
T TIGR03300 122 AED-GKELWR-AKLS---SEVL---SPPLVANG-LVVVRTNDGRLTALDAATG-ERLWTY 171 (377)
T ss_pred CCC-CcEeee-eccC---ceee---cCCEEECC-EEEEECCCCeEEEEEcCCC-ceeeEE
Confidence 877 432210 1111 1111 112 133 5666778999999999987 555444
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=45.35 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=57.6
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCC-
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNA- 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~- 321 (359)
.+++++.++.|..||..+ ++.+-. ..+.+.-... ... .+. .++.++.++.|+.+|.+++ +.+..+ .....
T Consensus 38 ~v~~~~~~~~l~~~d~~t-G~~~W~-~~~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT-GKVLWR-FDLPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPP 109 (238)
T ss_dssp EEEEEETTSEEEEEETTT-SEEEEE-EECSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTS-CEEEEEEE-SSCT
T ss_pred EEEEEcCCCEEEEEECCC-CCEEEE-eeccccccce---eee-ccc-ccccccceeeeEecccCCc-ceeeeeccccccc
Confidence 777788899999999977 442210 1111111111 111 233 5566668889999999998 666663 22211
Q ss_pred --CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 322 --DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 322 --~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..........+..++.... .+.|..+|..+|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKL 144 (238)
T ss_dssp CSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEE
T ss_pred cccccccCceEecCEEEEEec----cCcEEEEecCCCcE
Confidence 1111222222665665554 56678888887764
|
... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.052 Score=34.47 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
....|.++.|+|.. .++|.++.+|.|.|+.+..
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 34579999999999 7999999999999999854
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.056 Score=46.24 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=61.2
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.-++.|+.+|.|.+|....... ....+..-...|-++--+-....+..++..+|.|+.|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~--------------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA--------------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred ceEEeecccceEEEecCCccch--------------------HHHhhhcccccceeccccccccceeEEeccCCceeeec
Confidence 5688899999999998874211 00011111112222211212212788899999999999
Q ss_pred cCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEE--eCCCcEEEEECCCC
Q 018235 259 PASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRVG 309 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~~ 309 (359)
+.- .+.+ .....|+ .+++....+-.+. +++.. |.|..++.|++...
T Consensus 131 ~~p-~k~~---g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 131 IKP-NKVL---GYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccc-Ccee---eeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhhh
Confidence 865 3322 2233455 5555555555555 66666 77777777777653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.9 Score=34.55 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|.-++...|+.|+.|..|++|+-.. .+ ..+. -++.|..++-...+ .|+.+..+|+|-+|+-.. .+..
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e---~~---~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~---RlWR 76 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE---IV---AEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ---RLWR 76 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc---EE---EEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc---eeee
Confidence 44556666899999999999997533 22 2232 34667777665553 799999999999998643 4555
Q ss_pred eecCCCCEEEEEEcC
Q 018235 316 FKAHNADVNVISWNR 330 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~ 330 (359)
++.... ++++.+..
T Consensus 77 iKSK~~-~~~~~~~D 90 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYD 90 (111)
T ss_pred eccCCC-eEEEEEEc
Confidence 543333 55555443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.88 Score=44.46 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=80.4
Q ss_pred EEecCCCceeeEEEeCCC----CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC---c-
Q 018235 160 RKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---E- 231 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~- 231 (359)
+.++.-..|..+.|.|-+ +.++|.- ....|.||.+...... ..+.+.+-..+-. +
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e----------------~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTE----------------RNKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccc----------------cccceeeeeeeccCCccc
Confidence 345667789999999864 5778774 4578999998741110 1222222212111 1
Q ss_pred -eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 232 -GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 232 -v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-.+.-|+|... .|+.-.....-.+++++..+..+. .-+ ...+-|.|.+|.++|..++++.+..=.-+|||-...
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 12678999998 766655444445667766444331 122 456789999999999966666666555778986653
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.59 Score=44.41 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC---C
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP---I 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---~ 240 (359)
..|.|++++.+.-| ++|.|..+|.+.|.|++.+.-..... ......-......+.+|.|+. .
T Consensus 85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~-------------i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNEN-------------IRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEE-------------GGG--T-SS----EEEEEEEEEE-T
T ss_pred cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecc-------------ccccccccccccCeeEEEEEEEecC
Confidence 47999999998877 89999999999999998732111100 000000011223566777752 1
Q ss_pred CC----CeEEEEcCCCcEEEEecC--CCCcceecCcccc-CCCCCeEEEE-ecCC--------------------CCCEE
Q 018235 241 TT----GRLVTGDCNSCIYLWEPA--SDATWNVDPNPFI-GHSASVEDLQ-WSPT--------------------EPDVF 292 (359)
Q Consensus 241 ~~----~~l~sgs~dg~I~lwd~~--~~~~~~~~~~~~~-~h~~~V~~v~-~sp~--------------------~~~~l 292 (359)
+. -+|+.|...|.+.+|.+. ..+.+.+...... .+.+.|..|. ++.+ -+ -+
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~-g~ 228 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP-GY 228 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC-cE
Confidence 11 178889999999999774 2233332222222 4556655554 2111 12 23
Q ss_pred EEEeCCCcEEEEECCCC
Q 018235 293 ASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (359)
+.......+||+..-+.
T Consensus 229 vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEE-SSEEEEE-TT--
T ss_pred EEEEcccceEEEeCCCC
Confidence 34444677999988876
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.5 Score=41.64 Aligned_cols=161 Identities=15% Similarity=0.105 Sum_probs=103.4
Q ss_pred CCeEEEEEecCCC------ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 154 TPILQLRKVAHQG------CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 154 ~~~~~~~~~~H~~------~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.+.+-+.++.|+. .-|.+-|...+..++|+- .|.+.=|-..... ...|...-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavr--Sggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVR--SGGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEe--cCCeeEEEEeCCC------------------CCCCceeeec
Confidence 5667677777773 345555555454455543 3666667665521 1233333334
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
..++|.++.||++.. .||.--.+.+|.+++.................+..|...+|+.+. -+|-.+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 556999999999998 999999999999998743222111113333445668889998774 456555544 6666655
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.....++.++.|+..|+=-.|.++-..++..
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 5445666678888889888999887765544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.54 Score=42.82 Aligned_cols=149 Identities=14% Similarity=0.185 Sum_probs=72.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcE-EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
..-.+.++.+..++++ .++++++ .|.+ .-|+--.. ...+. -......+.+|.|+|+
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~-~G~~~~s~~~G~~-------------------~w~~~--~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSS-RGNFYSSWDPGQT-------------------TWQPH--NRNSSRRIQSMGFSPD 197 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEET-TSSEEEEE-TT-S-------------------S-EEE--E--SSS-EEEEEE-TT
T ss_pred cCCcceeEeEEECCCC-cEEEEEC-cccEEEEecCCCc-------------------cceEE--ccCccceehhceecCC
Confidence 3445888888888988 6777654 4554 46664431 12222 1223458999999999
Q ss_pred CCCeEEEEcCCCcEEEEe-cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe---
Q 018235 241 TTGRLVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--- 316 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--- 316 (359)
+. +.+ ....|.|++=+ ......|.....++....-.+.+++|.+.+. ++|+|+.. .+ +.-...+ +.=...
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G-~l-~~S~DgG-ktW~~~~~~ 271 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSG-TL-LVSTDGG-KTWQKDRVG 271 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEESSTT-SS-EE-GGG
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCCc-cE-EEeCCCC-ccceECccc
Confidence 75 444 44788888877 2222333322223323345689999999887 77766654 33 2333444 222222
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 317 KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
..-.+.+..|.|....+-++.+.
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE-S
T ss_pred cCCCCceEEEEEcCCCceEEECC
Confidence 12345678888887777666664
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=3.3 Score=39.23 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=99.8
Q ss_pred ceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEEeCCCCCC
Q 018235 167 CVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ 243 (359)
.-..+++.|.+..+.++-. .+++|.+.|-.. .....+ ..+- .+ ..+++.|++..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---------------------~~~~~~~~vG~-~P-~~~a~~p~g~~ 173 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---------------------NKVTATIPVGN-TP-TGVAVDPDGNK 173 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC---------------------CeEEEEEecCC-Cc-ceEEECCCCCe
Confidence 5567888888866666655 467788877766 222222 2222 23 78999999984
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecC-ccccCCCCCeEEEEecCCCCCEEEEEeCC--CcEEEEECCCCCCceEE-eecC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPDVFASCSVD--GHIAIWDTRVGKSALTS-FKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~las~s~D--g~I~iwD~r~~~~~~~~-~~~h 319 (359)
.+++-..++.|.+.|.... ...... .....-...-..+.++|++..+.++...+ +.+...|..++ ..... +..-
T Consensus 174 vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~ 251 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVG 251 (381)
T ss_pred EEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccc
Confidence 4444457889999997552 211000 00111223345688999999666666655 68999999886 33322 2111
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
......+..+|.|..+...... .+.+.+.|..+..
T Consensus 252 ~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~ 286 (381)
T COG3391 252 SGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR 286 (381)
T ss_pred cCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence 1134567889999988776442 4556666666543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.26 Score=46.77 Aligned_cols=136 Identities=11% Similarity=0.115 Sum_probs=78.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc--cc-cccccc------------------CCCCCC-CCCCCcEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL--AE-SETIVG------------------QGAPQV-SNQSPLVK 224 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~--~~-~~~~~~------------------~~~~~~-~~~~~~~~ 224 (359)
.|+.+.+.+.. .-+|.+...|.|.||.+....... .. ...... -..... ..-.|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 57889999987 678888999999999876532211 00 000000 000000 11245556
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC------CCCCeEEEEecC---CC----CCE
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG------HSASVEDLQWSP---TE----PDV 291 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~------h~~~V~~v~~sp---~~----~~~ 291 (359)
+....++|.+++.|..| ++|.|..+|.+.|.|+|.+ ..+.. ..+.. ....|+++.|+. .+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP-avI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP-AVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT-EEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC-eEEee-ccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66678899999998664 9999999999999999763 22211 11111 345688888862 11 126
Q ss_pred EEEEeCCCcEEEEECC
Q 018235 292 FASCSVDGHIAIWDTR 307 (359)
Q Consensus 292 las~s~Dg~I~iwD~r 307 (359)
++.|...|.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 7788889999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.2 Score=52.17 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=97.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeCCCCCC-e
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPITTG-R 244 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~-~ 244 (359)
.-+++..+++- .+++.++..+.+.|+-....+......... +..-...+...+..|.. .+..+..++++.- .
T Consensus 43 ~sn~la~sn~y-sl~Fa~~nsk~L~vfgtknlLi~~it~D~~-----n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSY-SLFFAASNSKSLAVFGTKNLLIDHITSDST-----NSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhccccc-ceEEEecCCcceeeeccccceeeccccccc-----ccccccccccceeeeccccceEEEeccCCceEE
Confidence 34556666665 344445666766666543311100000000 00001123345555554 5666666777542 2
Q ss_pred EEEEcCCCcEEEEecCCCCccee-cCccccCC------CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 245 LVTGDCNSCIYLWEPASDATWNV-DPNPFIGH------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
++..+++-.|..||++....... ...+|..| ..-+.++.|+|.-...+|.+..|+.|++.-+......+..+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 23334444688999986322110 01223222 23456889999988788999999999998877652233333
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.....+++++|+|.|+.++.+.. .+.+.-+.+
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P 227 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP 227 (1405)
T ss_pred CcccceeeEEeccccceeeEecC----CCeEEEeec
Confidence 34556899999999998887765 444444433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.8 Score=41.80 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee---------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV---------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~---------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
...++++++|++...++++..+.+|.+.|+.....+.. ...... ...-.-.+|.++|. .+.|...|..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~-aytslf~dsq 397 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGN-AYTTLFLDSQ 397 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCC-EEEeEeecce
Confidence 35678999999996677777799999999976322110 000001 11223468999987 8999999999
Q ss_pred EEEEECCC
Q 018235 301 IAIWDTRV 308 (359)
Q Consensus 301 I~iwD~r~ 308 (359)
|..|++..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.71 E-value=3 Score=38.30 Aligned_cols=165 Identities=11% Similarity=0.110 Sum_probs=96.5
Q ss_pred hhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCC
Q 018235 57 YNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSE 136 (359)
Q Consensus 57 Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~ 136 (359)
-..++...++-|+.++.-+.+ ++++|. .+.|.|+++..
T Consensus 79 l~~i~~~~~~g~V~ai~~~~~-------------~lv~~~------g~~l~v~~l~~----------------------- 116 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFNG-------------RLVVAV------GNKLYVYDLDN----------------------- 116 (321)
T ss_dssp EEEEEEEEESS-EEEEEEETT-------------EEEEEE------TTEEEEEEEET-----------------------
T ss_pred EEEEEEEeecCcceEhhhhCC-------------EEEEee------cCEEEEEEccC-----------------------
Confidence 356778888888888887733 477777 46899999941
Q ss_pred CCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCC
Q 018235 137 SSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV 216 (359)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (359)
+...+..........|.++.... ++++.|..-..|.++.+....
T Consensus 117 ----------------~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~----------------- 160 (321)
T PF03178_consen 117 ----------------SKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN----------------- 160 (321)
T ss_dssp ----------------TSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT-----------------
T ss_pred ----------------cccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC-----------------
Confidence 02244455555555777777764 577788888888888665421
Q ss_pred CCCCCcEEec--CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC------Cc-ceecCccccCCCCCeEEE---Ee
Q 018235 217 SNQSPLVKFG--GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD------AT-WNVDPNPFIGHSASVEDL---QW 284 (359)
Q Consensus 217 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~------~~-~~~~~~~~~~h~~~V~~v---~~ 284 (359)
..+..+. .....++++.+-+++. .++.++.+|.|.++..... +. .+.. .........|+++ ++
T Consensus 161 ---~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~-~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 161 ---NKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER-ISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ---E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE-EEEEE-SS-EEEEEE--S
T ss_pred ---CEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCccccccccccee-EEEEECCCccceEEEEEe
Confidence 1111221 1233678888886776 8999999999999877531 11 1111 1111234567777 55
Q ss_pred cCC--CCC-----EEEEEeCCCcEEEE
Q 018235 285 SPT--EPD-----VFASCSVDGHIAIW 304 (359)
Q Consensus 285 sp~--~~~-----~las~s~Dg~I~iw 304 (359)
.|. +.. .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 552 221 47778888888843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.05 Score=55.02 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=81.9
Q ss_pred ecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+..|.|-.++|.... +.+. -.-|.+.||++..-...+. ..-.+.........+--+.|+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq--------------~~l~v~~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQ--------------PQLEVTPITPYGSDPQLVSWCPI 191 (1283)
T ss_pred hcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccc--------------cceEEeecCcCCCCcceeeeccc
Confidence 3667888888884332 2222 3447899999876211110 00111112222234455677765
Q ss_pred CC--CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE-----------ecCCCCCEEEEEeCCCcEEEEECC
Q 018235 241 TT--GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ-----------WSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 241 ~~--~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~-----------~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
-. -++..+..++.|++..++.... ..|.+|...+.+++ .||+|. +||.++.||.+++|.+-
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 32 2677778888998877654221 33556777666654 589999 99999999999998765
Q ss_pred CCC----CceEEeecCCC
Q 018235 308 VGK----SALTSFKAHNA 321 (359)
Q Consensus 308 ~~~----~~~~~~~~h~~ 321 (359)
-.. .+++..+.|..
T Consensus 266 i~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eeccccHhhhhccCCCCC
Confidence 321 35566667763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.38 Score=46.37 Aligned_cols=134 Identities=10% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEE-ECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEEeCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVW-DLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~ 241 (359)
.|.-..+.|.+.+ .+|+-...++|.|+ ++.. .....+. .....+++ |
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~----------------------~~~k~i~~~~~~~~If~------G 117 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN----------------------EVVKSIKLPFSVEKIFG------G 117 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-----------------------TT-----SS-EEEEE-------S
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCcc----------------------ccceEEcCCcccceEEc------C
Confidence 3555667888844 57777778999996 3322 1111221 11223333 5
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC----------CC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG----------KS 311 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~----------~~ 311 (359)
. +|+..+ ++.|.+||..+ ++.+ +.+. -..|..|.|++++. ++|-.+.+ .+.|++.... ..
T Consensus 118 ~-LL~~~~-~~~i~~yDw~~-~~~i---~~i~--v~~vk~V~Ws~~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~ 187 (443)
T PF04053_consen 118 N-LLGVKS-SDFICFYDWET-GKLI---RRID--VSAVKYVIWSDDGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVED 187 (443)
T ss_dssp S-SEEEEE-TTEEEEE-TTT---EE---EEES--S-E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GG
T ss_pred c-EEEEEC-CCCEEEEEhhH-ccee---eEEe--cCCCcEEEEECCCC-EEEEEeCC-eEEEEEecchhcccccccCchh
Confidence 5 555554 45899999987 4443 3333 22489999999998 77777654 6777765431 00
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
....+..-...|.+..|..+ .+++...
T Consensus 188 ~f~~~~E~~~~IkSg~W~~d--~fiYtT~ 214 (443)
T PF04053_consen 188 AFELIHEISERIKSGCWVED--CFIYTTS 214 (443)
T ss_dssp GEEEEEEE-S--SEEEEETT--EEEEE-T
T ss_pred ceEEEEEecceeEEEEEEcC--EEEEEcC
Confidence 33344333567889999866 5555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.3 Score=36.73 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=83.7
Q ss_pred ceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 167 CVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+...++++++..+.+....+ ..++++.... .....+.+. .+..-.|++++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g~--~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTGG--SLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccCC--ccccccccCCCC-E
Confidence 678889999995555544233 4444444332 222222222 677889999976 6
Q ss_pred EEEEcCCCcEEEEe-cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCC-CC-------c
Q 018235 245 LVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVG-KS-------A 312 (359)
Q Consensus 245 l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~-~~-------~ 312 (359)
.+....+...+++. ...+....+... ...-...|..+.+||+|. .+|... .++.|.|--+... .. +
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~~v~-~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPVEVD-WPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeEEec-ccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 66656566666663 222111110001 111112899999999999 554443 3566776644322 11 1
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
..........+..++|.+++.+++.....
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eEecccccCcceeeeecCCCEEEEEeCCC
Confidence 11112335678999999999988877554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.13 Score=53.13 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=62.7
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.++.|+..|.+-..|.+..-.|. ..-..-.++|.+++|+-+|. +++.|-.+|.|.+||+..+ +.++.+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~---~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL---HQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh---hcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence 78889888999988886521211 11122457999999999999 9999999999999999987 6666665555543
Q ss_pred E---EEEEcCCCCeEEEE
Q 018235 324 N---VISWNRCWLAVCWH 338 (359)
Q Consensus 324 ~---~i~~s~~~~~l~~~ 338 (359)
. .+.|..++..++.+
T Consensus 176 t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred ceEEEEEEeCCCcEEEEc
Confidence 3 33444455544443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=7.6 Score=39.94 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=37.6
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEe
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~ 111 (359)
..|++.+|+..+..=+. .|-.-.+.|-||. .+|+++..+.+.+...|.|.++
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~ 160 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNL 160 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEEC
Confidence 34799999988743222 1333467777875 4888888888888888999988
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.8 Score=43.12 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=60.5
Q ss_pred CCcEEEEecCC----CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-----------ceEE
Q 018235 251 NSCIYLWEPAS----DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTS 315 (359)
Q Consensus 251 dg~I~lwd~~~----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-----------~~~~ 315 (359)
++.|.+.|.++ .... ..+..-......+.++|+++.+++++..+.+|.|.|+.+... .+..
T Consensus 295 gn~V~VID~~t~~~~~~~v----~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSAL----TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCEEEEEECCccccCCcce----EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 45688888765 1111 122233456677899999998888888999999999998621 1222
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+.. ...-...+|.++|.... ++- .+..+..|++..
T Consensus 371 vev-GlGPLHTaFDg~G~ayt-slf---~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PEL-GLGPLHTAFDGRGNAYT-TLF---LDSQIVKWNIEA 405 (635)
T ss_pred ecc-CCCcceEEECCCCCEEE-eEe---ecceeEEEehHH
Confidence 222 22234568888876333 222 266688888654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.31 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.4
Q ss_pred CeEEEEecCCC-----CCEEEEEeCCCcEEEEECCC
Q 018235 278 SVEDLQWSPTE-----PDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 278 ~V~~v~~sp~~-----~~~las~s~Dg~I~iwD~r~ 308 (359)
.|..++|||.| ..+||+...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999953 56899999999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.19 Score=30.99 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCC
Q 018235 277 ASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 277 ~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~ 309 (359)
+.|.++.|||... .+|+-.-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998544 58888888999999999953
|
It contains a characteristic DLL sequence motif. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.71 E-value=4.8 Score=35.86 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=80.4
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.|+++| |+++++.. ...+..... ...|..|...+.-. .|+.-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5677788888 99999833 123333222 22388999888776 666554 59999999
Q ss_pred cCCCCcceecC--c--------cccCCCCCeEEEE--ecCCCCCEEEEEeCCCcEEEEECCCCC----CceEEeecCCCC
Q 018235 259 PASDATWNVDP--N--------PFIGHSASVEDLQ--WSPTEPDVFASCSVDGHIAIWDTRVGK----SALTSFKAHNAD 322 (359)
Q Consensus 259 ~~~~~~~~~~~--~--------~~~~h~~~V~~v~--~sp~~~~~las~s~Dg~I~iwD~r~~~----~~~~~~~~h~~~ 322 (359)
+..-....... . ........+...+ =.+.+. ..+.+...+.|.||...... .....+. ....
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence 87522111000 0 0111223343333 112333 45556666699998877631 2333443 3467
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..++|. +..++.+.. ..+.+.|..++
T Consensus 141 ~~~i~~~--~~~i~v~~~-----~~f~~idl~~~ 167 (275)
T PF00780_consen 141 PSSIAFL--GNKICVGTS-----KGFYLIDLNTG 167 (275)
T ss_pred cEEEEEe--CCEEEEEeC-----CceEEEecCCC
Confidence 8889998 555555543 22555555544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.5 Score=42.30 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC--------Ccce-------ecCcccc-CCCCCeEEEEecCCC--CCE
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------ATWN-------VDPNPFI-GHSASVEDLQWSPTE--PDV 291 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--------~~~~-------~~~~~~~-~h~~~V~~v~~sp~~--~~~ 291 (359)
-+|..|..||.|. +||-.+..|.+.+.=++.. +... +....|. .+...|..+.|||.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3788999999998 7777776665444333321 1100 0111111 345678999999985 237
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEe
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+.=..|++||+||+.....+.+.+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 7788899999999998764444443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.93 Score=42.96 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEe--CCCCCCeEEEEcCCCcEEEEecCCC
Q 018235 187 TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDW--NPITTGRLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 187 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--sp~~~~~l~sgs~dg~I~lwd~~~~ 262 (359)
-.++++||+.. .+++.++.--.. -...|.| .|....-++.+.-.++|..|--...
T Consensus 221 G~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 221 GHSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp --EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred cCeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 36899999988 455555543322 2234444 4555534555556667766644333
Q ss_pred CcceecC------------------ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee-------
Q 018235 263 ATWNVDP------------------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK------- 317 (359)
Q Consensus 263 ~~~~~~~------------------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~------- 317 (359)
+.|.... +.|..-..-|++|..|.+.+.+.+++-..|.||-||+.....+...-+
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~ 359 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI 359 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe
Confidence 4443210 112222456899999999998889999999999999998744433211
Q ss_pred -----------cCCCCEEEEEEcCCCCeEEEEee
Q 018235 318 -----------AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 318 -----------~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.-.+..+.|..|.+|+.|.++.+
T Consensus 360 ~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 360 RKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp T-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 01223478899999998877643
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.1 Score=41.76 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCCeEEEEcCC-CcEEEEecCCCCcce-ecCc--ccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEE---
Q 018235 232 GYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWN-VDPN--PFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAI--- 303 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~d-g~I~lwd~~~~~~~~-~~~~--~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~i--- 303 (359)
...-.|+|++. .|++.+.. ..+++.+-...++.. .... ... .....|..+.|||+|. .+|... ++.|.+
T Consensus 399 ~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGV-RAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEE
Confidence 66789999977 66665422 122222211111110 0000 000 2356799999999999 444443 467776
Q ss_pred EECCCCCCce---EEee-cCCCCEEEEEEcCCCCeEEE
Q 018235 304 WDTRVGKSAL---TSFK-AHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 304 wD~r~~~~~~---~~~~-~h~~~V~~i~~s~~~~~l~~ 337 (359)
-....+...+ ..+. .-...+..+.|..++.+++.
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence 3333331111 1222 22333688999999986644
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=6.2 Score=35.36 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcE-EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceE-EEEeCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGY-AIDWNPIT 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~-~l~~sp~~ 241 (359)
...-..|.++|..+.-++.+-.-|+- .++|.... ..++ ++...+. -.| --.|||++
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~--------------------~~pv-~~~s~~~RHfyGHGvfs~dG 125 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA--------------------QEPV-TLVSQEGRHFYGHGVFSPDG 125 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCC--------------------cCcE-EEecccCceeecccccCCCC
Confidence 34444678888877777777777764 57888761 2222 2211111 111 12689999
Q ss_pred CCeEEEEcC-----CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 242 TGRLVTGDC-----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 242 ~~~l~sgs~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
. +|...-+ -|.|-|||.+..-+.+ -.+..|.-.-..+.|.++|. .++.
T Consensus 126 ~-~LYATEndfd~~rGViGvYd~r~~fqrv---gE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 126 R-LLYATENDFDPNRGVIGVYDAREGFQRV---GEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred c-EEEeecCCCCCCCceEEEEeccccccee---cccccCCcCcceeEEecCCc-EEEE
Confidence 8 6655433 3789999998643322 55677777778899999999 4443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=39.55 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=70.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCc-EEEEecCCCCccee----cCccccCCCCCeEEEEecCCCCCEEEEEe----CCCcE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPDVFASCS----VDGHI 301 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~-I~lwd~~~~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s----~Dg~I 301 (359)
.++.|.++|..+.-++.+-.-|+ ..++|......+.+ .-+-|.+|. +|||+|..+.||-. .-|.|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceE
Confidence 44567788777655666666666 46788876433321 124466674 79999994444432 34889
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
-|||.|.+-+.+-.+..|.-.-..+.|.++|+.++..
T Consensus 143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred EEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 9999997644566778888778889999999988765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=4.3 Score=37.16 Aligned_cols=112 Identities=7% Similarity=0.037 Sum_probs=63.5
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCC-CCcceec--CccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS-DATWNVD--PNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~-~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
+..+..|-..-++|+|||++..++++=+..+.|+-|++.. .+..... ...+....+..=.++..-+|. +.+++-..
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~ 233 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWG 233 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccC
Confidence 3344444445568999999983444445557888887752 1111000 011112234444556666676 55444333
Q ss_pred C-cEEEEECCCCCCceEEeecCCCCEEEEEEcC-CCCeEE
Q 018235 299 G-HIAIWDTRVGKSALTSFKAHNADVNVISWNR-CWLAVC 336 (359)
Q Consensus 299 g-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~ 336 (359)
| .|.+|+.. + +.+..+......+.+++|-- +...|.
T Consensus 234 g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 234 GGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred CceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEE
Confidence 3 89999988 5 66666665556678888864 334443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.90 E-value=7.9 Score=36.43 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC----cceecCccccC----CCCCeEEEEecCCCCCEEEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----TWNVDPNPFIG----HSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~----~~~~~~~~~~~----h~~~V~~v~~sp~~~~~las~ 295 (359)
.|........+|++.+.+ ++++ +....+++.+....+ +..+....+.. +......++|.|++. +.++.
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred EeecCCCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 343333345788888776 4554 334333444553211 11110112222 234578899999998 65554
Q ss_pred eCC-------------------CcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 296 SVD-------------------GHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 296 s~D-------------------g~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
+.. |.|.-++.... .+..+ .++ ...+.++|++.|.+++.+.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~--~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG--KLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCC--eEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 421 33444444432 22222 222 2357899999998877654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.65 E-value=3.7 Score=38.34 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=63.7
Q ss_pred EEEeC-CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE-EEecCCCCCEEEEEeCCC----cEEEEECC
Q 018235 234 AIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDG----HIAIWDTR 307 (359)
Q Consensus 234 ~l~~s-p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg----~I~iwD~r 307 (359)
...|. +++..+|.....+|.-+|+-+...+... +.++...-.|.. +.|++.+..++.++..+. .|...++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~---~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP---RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE---EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce---eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44443 6766677777788887777665434333 345555666744 788998886777877633 45555666
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
. ...+..+......-..++|+|++++++..+..
T Consensus 316 ~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 S-GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred C-CCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 1 14455554333322689999999999877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.2 Score=40.08 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCC-------CeEEEEcCCCcEEEEecCCCCcceec--CccccCCCCCeEEEEecCCCC
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITT-------GRLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~-------~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~ 289 (359)
++.+-.+..|..- -+.+.|... +.|+--| +..|.--|+|..+..+.. ...+. .+....+..- ++.
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~-tKn~Fss~~t--Tes 573 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYK-TKNKFSSGMT--TES 573 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhcc-cccccccccc--ccC
Confidence 4555566655543 466666532 2444444 566666688875532211 11111 1122222222 223
Q ss_pred CEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 290 DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.++|.+|..|-||+||--.. .....+.+....|..|....+|.++++.|.
T Consensus 574 GyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 38999999999999995432 333445777888999999999999998885
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.43 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.7
Q ss_pred CceeeEEEeCCCC--cEEEEEeCCCcEEEEECCC
Q 018235 166 GCVNRIRAMTQNP--HICASWADTGHVQVWDLRS 197 (359)
Q Consensus 166 ~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~ 197 (359)
|.|.+++|+|... .++|-.-..|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6789999998663 5788777889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.89 E-value=5.8 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.308 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEec--CCCCCEEEEEeCCCcEEEEEC-
Q 018235 231 EGYAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDT- 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~- 306 (359)
...-+.-|..+ .++..+.++ .+.|||.+. +.... ...| .....|.++.|. |+++ .+.+.+-.+.|.|+--
T Consensus 31 ~~~li~gss~~--k~a~V~~~~~~LtIWD~~~-~~lE~-~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 31 NPSLISGSSIK--KIAVVDSSRSELTIWDTRS-GVLEY-EESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQL 104 (631)
T ss_pred CcceEeecccC--cEEEEECCCCEEEEEEcCC-cEEEE-eeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEcc
Confidence 34444455544 344444444 689999986 33221 1233 456889999996 5677 6666667777877743
Q ss_pred C----CC-C--CceEEe--ecCC-CCEEEEEEcCCCCeEEEEe
Q 018235 307 R----VG-K--SALTSF--KAHN-ADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 307 r----~~-~--~~~~~~--~~h~-~~V~~i~~s~~~~~l~~~~ 339 (359)
| .. . .++..+ ..|+ .+|....|-++|.+++...
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 2 11 0 133333 4444 5799999999999887664
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.44 E-value=5.1 Score=40.27 Aligned_cols=117 Identities=15% Similarity=0.302 Sum_probs=67.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC--CCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~ 243 (359)
.....++-+.-+ .+.+.-+...++.|||..... ...-..| ...+.|..|+|. |++.
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~-------------------lE~~~~f-~~~~~I~dLDWtst~d~q- 87 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGV-------------------LEYEESF-SEDDPIRDLDWTSTPDGQ- 87 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcE-------------------EEEeeee-cCCCceeeceeeecCCCC-
Confidence 455555555555 444445556779999998721 1111233 345689999996 5666
Q ss_pred eEEEEcCCCcEEEEecC-----C-CCccee-cCccccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 244 RLVTGDCNSCIYLWEPA-----S-DATWNV-DPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~-----~-~~~~~~-~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.+++.+..+.|.++-.. . ...|.. ....+..|+ .+|.+..|-++|. +++.+ ...+.|+|-.
T Consensus 88 siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 55666668888887542 1 112221 001133444 6799999999997 33333 2457777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=91.12 E-value=7 Score=36.71 Aligned_cols=150 Identities=12% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCC---C-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEeC
Q 018235 165 QGCVNRIRAMTQNPHICASWADT---G-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWN 238 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d---g-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s 238 (359)
+..++-+.|+|..+.+|+-|-+. . .-+||-++.. +.....+..|.. .+.-=-|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--------------------g~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--------------------GSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--------------------S---EESS---TTEEEEEEEE-
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--------------------CCcceeeecCCCCccccccccc
Confidence 34567788999888888876653 2 2377877762 222222223322 22234688
Q ss_pred CCCCCeEEEE----cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---------------
Q 018235 239 PITTGRLVTG----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------------- 299 (359)
Q Consensus 239 p~~~~~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------------- 299 (359)
|+|..+..-+ +.+..|.-+++.+..... + .......-+.-++++. +|+--+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-----~-~~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-----L-MEMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-----E-EEE-SEEEEEE-TTSS-EEEEEE------------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE-----E-EeCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCC
Confidence 9987433322 234456667776632211 1 1111222344467887 665544432
Q ss_pred -cEEEEECCCCCCceEEeecCCCC-----------EEEEEEcCCCCeEEEEeeecc
Q 018235 300 -HIAIWDTRVGKSALTSFKAHNAD-----------VNVISWNRCWLAVCWHLEVMM 343 (359)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~~~-----------V~~i~~s~~~~~l~~~~~~~~ 343 (359)
.|+++++..+ . ...+..|... =-..+|+|+++.|++.....+
T Consensus 320 p~i~~~~~~~~-~-~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 320 PWIYLFDVEAG-R-FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp -EEEEEETTTT-E-EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred cEEEEeccccC-c-eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence 5667787764 2 2222223211 134699999999999876533
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.03 E-value=12 Score=34.21 Aligned_cols=141 Identities=12% Similarity=0.016 Sum_probs=73.8
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCC
Q 018235 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN 251 (359)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~d 251 (359)
.|.+....++.+--..+.|+-|+... ....++..... +.++..-..+ ++|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~----------------------g~~~~~~~p~~-~~~~~~~d~~-g~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPET----------------------GKKRVFPSPGG-FSSGALIDAG-GRLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCc----------------------CceEEEECCCC-cccceeecCC-CeEEEEc--
Confidence 45666655666666778888888764 11223322222 2333332222 2666664
Q ss_pred CcEEEEecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEe-----C-----CCcEEEEECCCCCCceEEeecCC
Q 018235 252 SCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCS-----V-----DGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s-----~-----Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
.-++++++..+...........+.. ..-+++...|+|..+|-+-+ . -|+|+.+|. .+ ..+..+..+-
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~ 162 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDL 162 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcE
Confidence 3356667654332111112222222 45688999999983343333 1 133444443 22 3344444445
Q ss_pred CCEEEEEEcCCCCeEEEEee
Q 018235 321 ADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~ 340 (359)
..-|.|+|+|+++.+.+...
T Consensus 163 ~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred EecCceEECCCCCEEEEEeC
Confidence 55689999999987766543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.056 Score=51.19 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=94.6
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
..+|.|.+.+ ++.++.+..|..||-..+ .... .........++|...+.-.++.+-
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~agq----------------------~~le-~n~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKAGQ----------------------VILE-LNPTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhhcc----------------------eecc-cCCchhHhhhhhccccchhhhhhh
Confidence 3466777745 555566778888886551 1111 122345567889888775667778
Q ss_pred CCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
..+.+.+||+++..... -.+.+ |+.+. +.|++..+ .++.+-..|.+.|+..++. +.+.....|.-.+.+++|
T Consensus 95 k~~piylwd~n~eytqq---LE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQ---LESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred cCCCeeechhhhhhHHH---HhccCcchHHH--HhhccCCc-cccccccccceEEEeccch-hhhhhhcccccceeEEEe
Confidence 88999999997632111 11222 22222 78999888 7788888999999999886 444455558889999999
Q ss_pred cCCCCeEEEEee
Q 018235 329 NRCWLAVCWHLE 340 (359)
Q Consensus 329 s~~~~~l~~~~~ 340 (359)
.+.+..+..++.
T Consensus 168 ~lEd~vil~dcd 179 (615)
T KOG2247|consen 168 TLEDYVILCDCD 179 (615)
T ss_pred cccceeeecCcH
Confidence 999887776654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=3 Score=41.91 Aligned_cols=99 Identities=8% Similarity=0.044 Sum_probs=55.1
Q ss_pred CceEEEEeCCCCCCeEEEEc------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEE
Q 018235 230 DEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIA 302 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~ 302 (359)
..+.+.+.||++. .++... .|..-.||-...++... ....+. ....-.|+|++. .+++.+.. ..++
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~---~lt~g~--~~t~PsWspDG~-~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAV---QVLEGH--SLTRPSWSLDAD-AVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcce---eeecCC--CCCCceECCCCC-ceEEEecCcceEE
Confidence 3567889999998 544433 24444444332222221 112222 367789999987 55555432 2222
Q ss_pred EE-----------ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEe
Q 018235 303 IW-----------DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 303 iw-----------D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
+. ++..+ .... .....|..+.|+|+|..+++-.
T Consensus 423 v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 423 VIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred EeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 32 33322 1111 2345699999999999887754
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.02 E-value=4.6 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.5
Q ss_pred ceEEEEeCCCCC-----CeEEEEcCCCcEEEEecCC
Q 018235 231 EGYAIDWNPITT-----GRLVTGDCNSCIYLWEPAS 261 (359)
Q Consensus 231 ~v~~l~~sp~~~-----~~l~sgs~dg~I~lwd~~~ 261 (359)
.+.+++|||.|- .+|+....+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 678999999653 2789999999999998753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.9 Score=36.86 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=61.5
Q ss_pred CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe------CCCcEEEEECCCCCCceEEeec-----CC
Q 018235 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRVGKSALTSFKA-----HN 320 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~~~~~~~~~~~-----h~ 320 (359)
..||+||+.. .+|. ..-.+-.+.|++++|.-... ++++|. ....+..||+.+. ....+.. -.
T Consensus 16 ~~lC~yd~~~-~qW~---~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDN-SQWS---SPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCC-CEee---cCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCC
Confidence 3689999976 7887 44445667899999986665 888875 4567889998874 2223332 24
Q ss_pred CCEEEEEEcCCC--CeEEEEeeecccceEEEEEeCcC
Q 018235 321 ADVNVISWNRCW--LAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 321 ~~V~~i~~s~~~--~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++|+.+.+.... .+.+.+.. ......|..||...
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS-ANGSTFLMKYDGSS 124 (281)
T ss_pred CcEEEEEeeccCCceEEEecee-cCCCceEEEEcCCc
Confidence 678888775433 23333322 33355677777653
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.1 Score=40.68 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=76.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-.|+|.+|+|++++ .++|.--.+.+|.++++...... .......+.-+..|.+..|+...
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~-----------------l~~~~~ck~k~~~IlGF~W~~s~-- 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ-----------------LEYTQECKTKNANILGFCWTSST-- 124 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh-----------------hHHHHHhccCcceeEEEEEecCe--
Confidence 36799999999999 89999999999999998542110 11122233334469999998774
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRV 308 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~ 308 (359)
-+|-.... -+-+|........ .+....|+..|+.-.|+|...-++.+.+ ..+++.=+.+++
T Consensus 125 e~A~i~~~-G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 125 EIAFITDQ-GIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred eEEEEecC-CeEEEEEchhhhh---hhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 46666544 4566655432222 2445668889999999998773333333 344444444444
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.77 Score=46.93 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=54.7
Q ss_pred CCeEEEEEec-CCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 154 TPILQLRKVA-HQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~-H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
.+.+..+.+. -...+..|.|+|-- ...+..+-.+|.|++..+..... ..|.+|..
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------~l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------SLFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH----------------------HHHHhcCC
Confidence 4445444433 33566778887743 24566677888998877766322 12223333
Q ss_pred ceEEE-----------EeCCCCCCeEEEEcCCCcEEEEecCCCCc
Q 018235 231 EGYAI-----------DWNPITTGRLVTGDCNSCIYLWEPASDAT 264 (359)
Q Consensus 231 ~v~~l-----------~~sp~~~~~l~sgs~dg~I~lwd~~~~~~ 264 (359)
.+..+ ..||+|. .||.+..||.++.|.+.-.++
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 32222 2689998 999999999999998765443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.77 E-value=34 Score=35.97 Aligned_cols=179 Identities=14% Similarity=0.183 Sum_probs=112.5
Q ss_pred eeeChhHhhhhhcccccCc-----ceeEEEEeccCCCCcccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCccc
Q 018235 50 LQCDPTAYNSLHAFHIGWP-----CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRR 119 (359)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP-----~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~-----~~~n~l~i~~~~~l~~~~~ 119 (359)
+++|+..+..+|.|.++-+ +.|+++.-|. ..|+++||---- ...+.|.|+++..+
T Consensus 753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~----------~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----- 817 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDP----------NTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----- 817 (1096)
T ss_pred EEecCCceeEEeeccccccceeeeeeeeeecCCC----------ceEEEEEEEeeccCCCCcccceEEEEEEecC-----
Confidence 5677888888888888754 3455565542 368999997533 34568888988410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc
Q 018235 120 ELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL 199 (359)
Q Consensus 120 ~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~ 199 (359)
..........-.|.|.++..-. | .++|. -...|++|++..
T Consensus 818 ----------------------------------~~L~~v~e~~v~Gav~aL~~fn-g-kllA~--In~~vrLye~t~-- 857 (1096)
T KOG1897|consen 818 ----------------------------------NSLELVAETVVKGAVYALVEFN-G-KLLAG--INQSVRLYEWTT-- 857 (1096)
T ss_pred ----------------------------------CceeeeeeeeeccceeehhhhC-C-eEEEe--cCcEEEEEEccc--
Confidence 1122233334567787776543 3 46664 347899999987
Q ss_pred cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCC
Q 018235 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSAS 278 (359)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~ 278 (359)
.+.++.-..|...+.+|...-.+. .++.|+--++|.+...+.. +.... ..-.-+...
T Consensus 858 -------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~e--vArD~~p~W 915 (1096)
T KOG1897|consen 858 -------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEE--VARDYNPNW 915 (1096)
T ss_pred -------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEE--eehhhCccc
Confidence 345566667788899999988887 9999999898887665542 22221 111224455
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
..++.+--.. .++-+-.+|.+.+....
T Consensus 916 mtaveil~~d--~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVEILDDD--TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEEEecCc--eEEeecccccEEEEEec
Confidence 5555554333 45555566666665443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=20 Score=33.25 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=82.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+.++.+.+.|++ .++++ +..|.+..- ...... ...++ ...-...++++.+.+.++ .
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg~-----------------tW~~~--~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQT-----------------AWTPH--QRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCCC-----------------eEEEe--eCCCcccceeeeEcCCCC-E
Confidence 4678888888877 45554 445655421 111000 01111 112234788999999887 5
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee---cCCC
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---AHNA 321 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~~ 321 (359)
++.| ..|.+.+=....+..|.....+.......+.++.+.|.+. +++ ++.+|.|.. -...+ +.-..+. .-..
T Consensus 229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~ 303 (334)
T PRK13684 229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPS 303 (334)
T ss_pred EEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCc
Confidence 5555 4677654233343445421111111234578899999776 555 555675543 33333 2212221 2223
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+.+.|...+..++.+. .+.|.-++..
T Consensus 304 ~~~~~~~~~~~~~~~~G~-----~G~il~~~~~ 331 (334)
T PRK13684 304 NFYKIVFLDPEKGFVLGQ-----RGVLLRYVGS 331 (334)
T ss_pred ceEEEEEeCCCceEEECC-----CceEEEecCC
Confidence 577888887777776654 3555555543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.54 E-value=21 Score=33.28 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=59.9
Q ss_pred eEEEe-CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE-EEeCCCCCCeEEE
Q 018235 170 RIRAM-TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA-IDWNPITTGRLVT 247 (359)
Q Consensus 170 ~i~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~s 247 (359)
.+.+. +++..++.....+|.-+||-+... ......+....-.|.. +.|++.+..++.+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------------------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLD--------------------GGKPRQLTSGDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETT--------------------SSEEEESS-SSS-EEEEEEEECTSSEEEEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccc--------------------ccceeccccCceeecccceEcCCCCEEEEE
Confidence 45554 666566666668888777766652 2223344444446644 6788887755666
Q ss_pred EcCC--CcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 248 GDCN--SCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 248 gs~d--g~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
|..+ +.-+||-+... +.-. ..++.....-..++|||++..++.+|+.-
T Consensus 299 a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 299 ANGDNPGERHLYRVSLDSGGEP---KCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ESSGGTTSBEEEEEETTETTEE---EESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ecCCCCCceEEEEEEeCCCCCe---EeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 6653 35566655443 2222 22332222226899999999777777754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.51 E-value=16 Score=31.87 Aligned_cols=98 Identities=8% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCC-Ccc-----eecCccccCCCCCe-EEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASD-ATW-----NVDPNPFIGHSASV-EDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~~~-----~~~~~~~~~h~~~V-~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
++|+|+.+...+.+.-+.+-.|.-||.... +.. +..++..+...... -.++..-.|. +++++-..++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEEC
Confidence 478998887756666677778877874321 111 11111111111111 1123344565 899999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCC
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCW 332 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~ 332 (359)
..++ +.+.++.-....|+|++|--.+
T Consensus 240 p~tG-K~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 240 PTTG-KILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred CCCC-cEEEEEEcCCCceEEEEecCCC
Confidence 9998 7788887778889999997543
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.95 E-value=6.8 Score=38.01 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=50.8
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC--------Cccee-------cCccccCC-CCCeEEEEecCCC--CCEE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------ATWNV-------DPNPFIGH-SASVEDLQWSPTE--PDVF 292 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--------~~~~~-------~~~~~~~h-~~~V~~v~~sp~~--~~~l 292 (359)
+|+.+..|+.|. .++-.+-+|.+.++-++.- ++..+ ..+.|... .-.+..++|||+. ...+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 788899999998 6666666887665543221 11111 11112221 2346778999987 4577
Q ss_pred EEEeCCCcEEEEECCCC
Q 018235 293 ASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (359)
..-+.|.+|||||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 77889999999998765
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=87.69 E-value=20 Score=31.96 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=76.5
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
-+..|| ..+...+||... .+++.+|.- ..++++|+ .++. .|+..+....|+++|
T Consensus 102 l~qLTW-k~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 102 LYQLTW-KEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLD 155 (264)
T ss_dssp EEEEES-SSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-
T ss_pred EEEEEe-cCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEEC
Confidence 344454 468899999886 345555643 35899998 3555 666666678899999
Q ss_pred cCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee------c------C---CCC
Q 018235 259 PASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK------A------H---NAD 322 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~------~------h---~~~ 322 (359)
+.+............+ --..++.+-|- +|. +.|-.-....|...|..++ ..+..+. . + ..-
T Consensus 156 P~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 156 PETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred CcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCe
Confidence 8763221100001111 12356667775 555 8888877778888898887 4443331 0 1 234
Q ss_pred EEEEEEcCCCCeEEEEee
Q 018235 323 VNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~ 340 (359)
.|.|+|+|....+..+..
T Consensus 233 LNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEeEeEeCCCCEEEEEeC
Confidence 799999998876665544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.58 E-value=12 Score=35.73 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=54.9
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC-CeEEEEecC--------------
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA-SVEDLQWSP-------------- 286 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp-------------- 286 (359)
.+.|......+.+|..+|.+. +.|+.+.=|+|.|+|+.. +..+ +...|..+ .+.-+.-..
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~-~~vv---rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVAR-GIVV---RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred EEeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCC-Chhh---hhhccCccceEEEEEeecccccccccccccCC
Confidence 445666666899999999987 888888889999999977 3322 33333221 111111100
Q ss_pred --C-CCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 287 --T-EPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 287 --~-~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
. ...+++-+-.-|.|-||.++.+ ..+..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g-~Rv~a~ 406 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQG-PRVAAF 406 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCC-CEEEEE
Confidence 0 1113444567888999999987 445444
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.24 E-value=3.1 Score=24.96 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++..+++++..+++|.++|..+. ..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence 456667888888999999999876 55555543
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=32 Score=32.56 Aligned_cols=63 Identities=10% Similarity=0.223 Sum_probs=38.7
Q ss_pred eEEEEcCCCcEEEEecCCCCc-ceecCccccCCCCCeEE-EEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
.++.++.+|.++.+|..++.. |. ..+.+ .+.+ ... .+. .++.++.++.|.-+|..++ +.+..+
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~---~~~~~---~~~ssP~v--~~~-~v~v~~~~g~l~ald~~tG-~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQ---TKVAG---EALSRPVV--SDG-LVLVHTSNGMLQALNESDG-AVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCccc---ccCCC---ceecCCEE--ECC-EEEEECCCCEEEEEEccCC-CEeeee
Confidence 677788899999999877432 22 11111 1111 011 123 5566778899999999988 555554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=85.55 E-value=35 Score=32.69 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=42.3
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-CCCEEEEEEcCCCCe
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNRCWLA 334 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~s~~~~~ 334 (359)
.+++..++.||+++ .+|.-..+|.+.|....-. +.+..+... ......+.|.-++..
T Consensus 216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCCCC-EEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcE
Confidence 35799999999999 8899999999999876654 555555333 345677888876553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=85.52 E-value=35 Score=32.68 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA 260 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~ 260 (359)
+++.++.-..+.+.++.|+... .|+....||.++++|+.
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence 4455444444789999998854 56677789999999984
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=84.91 E-value=27 Score=30.90 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=62.0
Q ss_pred ceEEEEeCCCCCCeEEEEc---CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE-C
Q 018235 231 EGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-T 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~ 306 (359)
.+.+.++++++. .++... ....++++... +... ..+.+ ..+..-+|++++. +.+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~--~~~~---~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAG--GPVR---PVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCC--Ccce---eeccC--CccccccccCCCC-EEEEEcCCCceEEEEec
Confidence 677899999998 555443 33345555443 2222 11222 3677789999977 777767677777774 3
Q ss_pred CCCCCceEEeecC--CCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKSALTSFKAH--NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+......+... ...|..+.++|+|..++.-..
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEe
Confidence 3332222233222 227999999999998876653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=84.35 E-value=38 Score=32.07 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=41.3
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.|+.++.+|.+..+|..++ +.+-....+. +. ....... .+. .+..++.+|.|.++|..++ +.+......
T Consensus 296 ~vy~~~~~g~l~ald~~tG-~~~W~~~~~~-~~-~~~sp~v--~~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~ 364 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGG-VELWSQSDLL-HR-LLTAPVL--YNG-YLVVGDSEGYLHWINREDG-RFVAQQKVD 364 (394)
T ss_pred EEEEEcCCCeEEEEECCCC-cEEEcccccC-CC-cccCCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcC
Confidence 7777888999999998773 3221011111 11 1111111 133 6778899999999999998 655555433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=83.49 E-value=57 Score=33.49 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=69.2
Q ss_pred eEEEEeCCCC-CCeEEEEcCCCcEEEEecCCC------C-------cceecCccc--cCCCCCeEEEEec--CCCCCEEE
Q 018235 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASD------A-------TWNVDPNPF--IGHSASVEDLQWS--PTEPDVFA 293 (359)
Q Consensus 232 v~~l~~sp~~-~~~l~sgs~dg~I~lwd~~~~------~-------~~~~~~~~~--~~h~~~V~~v~~s--p~~~~~la 293 (359)
|+.|.....+ ...|+.|..||.|.+|-+..- . .......++ ..-..+++.++++ .... +||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEE
Confidence 5555444332 227888999999999965210 0 000001121 1234688999998 6665 888
Q ss_pred EEeCCCcEEEEECCCCCC--ceEEeecCCCCEEEEEEcCCC---C---eEEEEeeecccceEEEE-EeCcCC
Q 018235 294 SCSVDGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRCW---L---AVCWHLEVMMEHFLFMI-LDCSRG 356 (359)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~--~~~~~~~h~~~V~~i~~s~~~---~---~l~~~~~~~~~d~~i~i-wd~~~g 356 (359)
.++....|.||-+..... ....-..|..-|-+|+|-++. . .+++. .-.++-.++++ |....+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~-dI~G~v~~~~I~~~~~~g 252 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT-DISGEVWTFKIKFKEGRG 252 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE-eccCcEEEEEEEEeeccC
Confidence 888888899986655211 111111255668899998754 1 33333 23233445556 555555
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=60 Score=33.50 Aligned_cols=117 Identities=6% Similarity=0.001 Sum_probs=61.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~ 240 (359)
-.+..+.++|++..++.+...+ ..|++.|+.+ +..+. .+.+ . -..++|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~-~--~~~~~w~~D 182 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDN-V--EPSFVWAND 182 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccC-c--ceEEEEeeC
Confidence 3466788999995444443333 3577777765 22111 1111 1 156999999
Q ss_pred CCCeEEEEcCC-----CcEEEEecCCCCcceecCccccCCCCCeE-EEEecCCCCCEEEEEe--CCCcEEEEECCC
Q 018235 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCS--VDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s--~Dg~I~iwD~r~ 308 (359)
+.+++++...+ ..|+++++.++..-. ...+........ .+..+.++..+++.++ .++.+.+++...
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCChhHC--eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 98666665432 357777776631111 112332222232 2233336664554443 346788888543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=81.73 E-value=17 Score=34.75 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=32.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
..+......+.+|..+|.+ .++|+...-|.|.++|+..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCC
Confidence 5556677789999999998 7888877779999999987
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.72 E-value=8.2 Score=38.46 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCeEEEEecC---CCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 277 ASVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 277 ~~V~~v~~sp---~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
..+.+++.++ .+..++++.+.|+.|||||+.++ .++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~-~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG-QCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTT-CEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC-eEEEEe
Confidence 4456667766 24449999999999999999998 554443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.35 E-value=27 Score=34.07 Aligned_cols=62 Identities=11% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
..|++|.|+..|-|++||--. -.. ...+.+-...|--|..+.+|.++||||- ..|-+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig-~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRA---KTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chh---hhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 346999999999999998532 111 1345666778888999999998888884 4666777653
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.72 E-value=66 Score=34.79 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.-....+|+|.+++-.. | .++++ ..-.|.||++.... ...++. | -.-++|-.+..
T Consensus 1091 l~~eE~KGtVsavceV~-G--~l~~~-~GqKI~v~~l~r~~------------------~ligVa-F--iD~~~yv~s~~ 1145 (1366)
T KOG1896|consen 1091 LYIEEQKGTVSAVCEVR-G--HLLSS-QGQKIIVRKLDRDS------------------ELIGVA-F--IDLPLYVHSMK 1145 (1366)
T ss_pred eehhhcccceEEEEEec-c--EEEEc-cCcEEEEEEeccCC------------------cceeeE-E--eccceeEEehh
Confidence 33345678998876543 4 34442 34679999995411 012222 2 12355566666
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r 307 (359)
...+ +|+.|+--..|.+.-.......+. ...-....-.|.++.|--+|.+ .|+.+..++.|+++-..
T Consensus 1146 ~vkn-lIl~gDV~ksisfl~fqeep~rls-L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1146 VVKN-LILAGDVMKSISFLGFQEEPYRLS-LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhh-heehhhhhhceEEEEEccCceEEE-EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 6666 888888888888776654222110 0000112235677777767665 47778889999998543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.56 E-value=38 Score=30.64 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
|-...+.+|.|+|+.+ .|++......-.+|=... +..+. ..++.+ -+..+.|.|.-.+. +.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~-Gdlir-tiPL~g-~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKE-GDLIR-TIPLTG-FSDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecC-CceEE-Eecccc-cCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 4445689999999998 666665566655654434 55442 234554 23456677877776 5555567888888877
Q ss_pred CCCCC------ceEEe--ecC-CCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKS------ALTSF--KAH-NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~------~~~~~--~~h-~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..... ....+ ..+ +...-.++|.|.+..+.+.-.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 65411 11122 122 667788999999887776643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.52 E-value=35 Score=29.90 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=63.8
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC------CCceEEEEeCCC
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH------KDEGYAIDWNPI 240 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~ 240 (359)
--|.++|..+...+..+-+.+-.|.-||...+...+. ..+.++.+... ...+.++ .-.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------------nr~~i~dlrk~~~~e~~~PDGm~I--D~e 222 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------------NRKVIFDLRKSQPFESLEPDGMTI--DTE 222 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCccccc--------------CcceeEEeccCCCcCCCCCCcceE--ccC
Confidence 3466777766656666777778888888655221111 12222222221 1123344 335
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE-EEEeC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF-ASCSV 297 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l-as~s~ 297 (359)
|. +++++-..++|...|+.+ ++.+ ..+.-.+..|++++|--.+-.+| +|+..
T Consensus 223 G~-L~Va~~ng~~V~~~dp~t-GK~L---~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 223 GN-LYVATFNGGTVQKVDPTT-GKIL---LEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred Cc-EEEEEecCcEEEEECCCC-CcEE---EEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 55 677777788999999988 5655 34444578899999964432344 44443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=80.19 E-value=5.7 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=21.1
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCC--CcEEEE
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVD--GHIAIW 304 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~D--g~I~iw 304 (359)
....-....|||+|+.++.+...+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999666666666 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-18 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-18 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-17 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-17 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-17 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-17 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-06 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-04 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 3e-04 |
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.94 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.94 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.94 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.93 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.93 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.93 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.92 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.92 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.92 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.91 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.91 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.91 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.91 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.91 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.91 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.9 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.9 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.9 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.9 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.9 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.9 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.89 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.89 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.89 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.89 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.89 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.88 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.88 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.88 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.88 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.88 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.87 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.85 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.85 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.85 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.85 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.85 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.84 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.83 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.83 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.81 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.79 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.78 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.77 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.75 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.65 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.61 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.61 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.6 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.58 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.58 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.57 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.55 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.53 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.52 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.52 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.51 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.51 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.5 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.5 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.46 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.46 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.46 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.45 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.42 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.41 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.4 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.39 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.38 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.36 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.29 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.29 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.26 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.26 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.18 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.16 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.14 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.14 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.12 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.11 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.08 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.07 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.06 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.05 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.02 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.0 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.97 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.97 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.95 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.95 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.95 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.93 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.91 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.9 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.87 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.8 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.74 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.74 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.73 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.69 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.65 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.61 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.61 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.57 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.56 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.47 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.45 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.44 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.4 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.38 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.29 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.28 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.28 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.21 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.11 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.04 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.01 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.99 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.93 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.91 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.86 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.84 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.84 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.83 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.78 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.74 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.64 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.64 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.51 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.46 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.41 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.4 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.37 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.36 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.34 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.18 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.08 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.02 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.92 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.92 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.88 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.87 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.83 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.79 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.77 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.62 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.59 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.56 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.45 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.39 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.31 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.21 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.2 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.18 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.12 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.12 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.07 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.06 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.98 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.92 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.84 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.77 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.51 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.34 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.27 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.04 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.02 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.75 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.64 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 94.63 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.35 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.1 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 93.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.71 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.67 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.58 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 93.21 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.81 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.71 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 92.35 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.31 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.27 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.21 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 91.87 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.54 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 91.35 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 90.96 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 90.65 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 90.3 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 88.86 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 88.37 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 88.08 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 86.03 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 85.51 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 84.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.63 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 84.14 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 82.36 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 81.04 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 80.47 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 80.46 |
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=332.80 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=218.3
Q ss_pred CCCCCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEE
Q 018235 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGV 108 (359)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i 108 (359)
..+++|++|+++++ +||+|++++.|+||||+|||+|+..+..+..|| .+++++||++.+ ..|+|+|
T Consensus 20 ~~~~~~~~wk~n~~------------~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~-~~~~~~GT~t~~-~~n~i~i 85 (430)
T 2xyi_A 20 VINEEYKIWKKNTP------------FLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYS-VHRLILGTHTSD-EQNHLLI 85 (430)
T ss_dssp HHHHHHHHHHHHHH------------HHEEEEEEEECSSCCSCEEECSCCEECTTCSCE-EEEEEEECCCSS-SCEEEEE
T ss_pred hhhHHHhhHhhCCh------------HHHHHHhhcCCCCCceEEEECcccccccCCCcc-eEEEEEEEcCCC-CCCEEEE
Confidence 34568999999999 999999999999999999999999888888898 699999999998 8999999
Q ss_pred EEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCCCeE-EEEEecCCCceeeEEEeCCCCcEEEEEe
Q 018235 109 FKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWA 185 (359)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~--~~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s 185 (359)
+++. |+...... ++.++ |+++++.++ ...+.+ ....++|.+.|++++|+|+++.+||+++
T Consensus 86 ~~~~-lp~~~~~~------------~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~ 148 (430)
T 2xyi_A 86 ASVQ-LPSEDAQF------------DGSHY----DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKT 148 (430)
T ss_dssp EEEE-EC------------------------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEEC
T ss_pred EEEE-CCCCcccc------------ccccc----cccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEEC
Confidence 9996 54322110 11111 111111110 124444 4778899999999999998558999999
Q ss_pred CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-
Q 018235 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT- 264 (359)
Q Consensus 186 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~- 264 (359)
.+|.|+||++........... ...++..+.+|...|++|+|+|.+.++|++|+.||.|++|+++....
T Consensus 149 ~dg~V~vwd~~~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 217 (430)
T 2xyi_A 149 PSSDVLVFDYTKHPSKPEPSG-----------ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE 217 (430)
T ss_dssp SSSCEEEEEGGGSCSSCCTTC-----------CCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred CCCcEEEEECCCcccccCccc-----------cCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence 999999999986322211000 25678899999999999999999988999999999999999987322
Q ss_pred --ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--CceEEeecCCCCEEEEEEcCCCCe-EEEEe
Q 018235 265 --WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWNRCWLA-VCWHL 339 (359)
Q Consensus 265 --~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~~~~~h~~~V~~i~~s~~~~~-l~~~~ 339 (359)
.......+.+|...|.+++|+|.+..+|++|+.||.|+|||+++.. .++..+..|...|++|+|+|++.. ++++.
T Consensus 218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~ 297 (430)
T 2xyi_A 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297 (430)
T ss_dssp GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe
Confidence 1112355778999999999999766699999999999999999862 467778899999999999999985 55555
Q ss_pred eecccceEEEEEeCcCC
Q 018235 340 EVMMEHFLFMILDCSRG 356 (359)
Q Consensus 340 ~~~~~d~~i~iwd~~~g 356 (359)
. ++.|++|+.+..
T Consensus 298 ~----dg~v~vwd~~~~ 310 (430)
T 2xyi_A 298 A----DKTVALWDLRNL 310 (430)
T ss_dssp T----TSEEEEEETTCT
T ss_pred C----CCeEEEEeCCCC
Confidence 4 899999999873
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=229.91 Aligned_cols=211 Identities=16% Similarity=0.233 Sum_probs=170.0
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.+-+..++.|.|+. +|++|+ .++.|+||++..-
T Consensus 81 ~~~~v~~~~~s~d~------------~l~~~s-----~dg~v~lWd~~~~------------------------------ 113 (344)
T 4gqb_B 81 TEAGVADLTWVGER------------GILVAS-----DSGAVELWELDEN------------------------------ 113 (344)
T ss_dssp ESSCEEEEEEETTT------------EEEEEE-----TTSEEEEEEECTT------------------------------
T ss_pred cCCCEEEEEEeCCC------------eEEEEE-----CCCEEEEEeccCC------------------------------
Confidence 34567788888873 567776 4679999998310
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
.....+.....+|.+.|++++|+|++ .+||+|+.||+|+|||+.. .+++.+
T Consensus 114 -------~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~---------------------~~~~~~ 164 (344)
T 4gqb_B 114 -------ETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ---------------------QVVLSS 164 (344)
T ss_dssp -------SSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEE
T ss_pred -------CceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEE
Confidence 01223445667999999999999999 8999999999999999987 677889
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
+.+|...|++++|+|++..+|+||+.|++|++||++++ +.... .....|...+.+++|+|.+..+|++|+.||+|+||
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KPASQ-IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SCEEE-CC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCcCCceEEEEecCCCCCceeeecccccccccccccc-ceeee-eecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 99999999999999999778999999999999999874 33311 12345667899999999877799999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|++++ +++..+.+|...|++++|+|++. +|+.+.. |+.|++||.+++++
T Consensus 243 d~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~----D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 243 DTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSE----DCSLAVLDSSLSEL 292 (344)
T ss_dssp ESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEET----TSCEEEECTTCCEE
T ss_pred ECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeC----CCeEEEEECCCCcE
Confidence 99998 78889999999999999999985 5666655 89999999988753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=227.87 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=167.2
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|+ .++.|.||++.
T Consensus 127 ~~~V~~v~~spdg-----------~~l~sgs-----~d~~i~iwd~~--------------------------------- 157 (344)
T 4gqb_B 127 DDIVSTVSVLSSG-----------TQAVSGS-----KDICIKVWDLA--------------------------------- 157 (344)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3466788888875 4777777 46789999873
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+.+|.+.|+++.|+|++..++++++.||+|+|||++. .++...+
T Consensus 158 --------~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---------------------~~~~~~~ 208 (344)
T 4gqb_B 158 --------QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC---------------------PKPASQI 208 (344)
T ss_dssp --------TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS---------------------SSCEEEC
T ss_pred --------CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc---------------------cceeeee
Confidence 44566778899999999999999878999999999999999987 4555555
Q ss_pred c--CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 226 G--GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 226 ~--~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
. .|...+.+++|+|.+..+|++|+.||+|+|||+++ ++.+ ..+.+|...|++|+|+|++..+||+|+.|++|+|
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~---~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCV---LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CC---EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEE---EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 3 45557899999998766899999999999999987 4444 6788999999999999998769999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
||++++ .+..+.+|...|++++|+|++..++.+.. .|+.|++|+..+.+
T Consensus 285 wd~~~~--~~~~~~~H~~~V~~v~~sp~~~~llas~s---~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 285 LDSSLS--ELFRSQAHRDFVRDATWSPLNHSLLTTVG---WDHQVVHHVVPTEP 333 (344)
T ss_dssp ECTTCC--EEEEECCCSSCEEEEEECSSSTTEEEEEE---TTSCEEEEECCC--
T ss_pred EECCCC--cEEEEcCCCCCEEEEEEeCCCCeEEEEEc---CCCeEEEEECCCCC
Confidence 999985 45667899999999999999986654433 28999999987654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=221.35 Aligned_cols=165 Identities=19% Similarity=0.285 Sum_probs=149.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....+..|...|.+++|+|++ .+||+++.||.|++||+.. .+++..+.+|...|.+++
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~l~ 213 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIAT---------------------GKLLHTLEGHAMPIRSLT 213 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCCCEEE
T ss_pred eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcccCCceeEEE
Confidence 345666889999999999999 8999999999999999987 567788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|++. +|++|+.||+|++||++. .... ..+.+|...|.+++|+|++. +|++++.|++|+|||++++ .++..+
T Consensus 214 ~spd~~-~l~s~s~dg~i~iwd~~~-~~~~---~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~-~~~~~~ 286 (321)
T 3ow8_A 214 FSPDSQ-LLVTASDDGYIKIYDVQH-ANLA---GTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTR-TCVHTF 286 (321)
T ss_dssp ECTTSC-EEEEECTTSCEEEEETTT-CCEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred EcCCCC-EEEEEcCCCeEEEEECCC-ccee---EEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC-EEEEEE
Confidence 999998 999999999999999987 4443 56889999999999999999 9999999999999999987 788888
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|...|++++|+|++..|+.+.. |+.|++||..
T Consensus 287 ~~h~~~v~~v~~s~~g~~l~s~~~----d~~i~vwd~p 320 (321)
T 3ow8_A 287 FDHQDQVWGVKYNGNGSKIVSVGD----DQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET----TCCEEEEECC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEeCC
Confidence 999999999999999999988876 8999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=217.14 Aligned_cols=206 Identities=18% Similarity=0.265 Sum_probs=172.0
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-|..++.|.|+. .+|++|. .++.|.||++.
T Consensus 55 ~~~v~~~~~~~~~-----------~~l~s~s-----~d~~i~vwd~~--------------------------------- 85 (304)
T 2ynn_A 55 ETPVRAGKFIARK-----------NWIIVGS-----DDFRIRVFNYN--------------------------------- 85 (304)
T ss_dssp SSCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCcEEEEEEeCCC-----------CEEEEEC-----CCCEEEEEECC---------------------------------
Confidence 4577888898885 4777887 47799999872
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+.+|.+.|++++|+|++ .++++++.||+|++||+.. .......+
T Consensus 86 --------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~--------------------~~~~~~~~ 136 (304)
T 2ynn_A 86 --------TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------------------NWALEQTF 136 (304)
T ss_dssp --------TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGG--------------------TTEEEEEE
T ss_pred --------CCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCC--------------------Ccchhhhh
Confidence 333446677999999999999999 7999999999999999976 23445678
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC--CCCCEEEEEeCCCcEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP--TEPDVFASCSVDGHIAI 303 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~~~~~las~s~Dg~I~i 303 (359)
.+|...|.+++|+|.+..+|++|+.|++|++||++...... ....+|...|..++|+| ++. +|++|+.|++|+|
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~i 212 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF---TLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE---EEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc---eeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEE
Confidence 99999999999999654499999999999999997733222 23346778999999988 455 9999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
||++++ .++..+.+|...|++++|+|++.+|+.+.. |+.|++||..++++
T Consensus 213 Wd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~----Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 213 WDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSE----DGTLKIWNSSTYKV 262 (304)
T ss_dssp EETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcC----CCeEEEEECCCCce
Confidence 999997 788889999999999999999999988876 99999999988753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=213.94 Aligned_cols=202 Identities=14% Similarity=0.225 Sum_probs=170.6
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
+..++.|-|+. .+|++|. .++.|.||++.
T Consensus 15 ~V~~~~fsp~~-----------~~l~s~~-----~dg~v~lWd~~----------------------------------- 43 (304)
T 2ynn_A 15 RVKGIDFHPTE-----------PWVLTTL-----YSGRVELWNYE----------------------------------- 43 (304)
T ss_dssp CEEEEEECSSS-----------SEEEEEE-----TTSEEEEEETT-----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEc-----CCCcEEEEECC-----------------------------------
Confidence 45688888885 4777777 46799999873
Q ss_pred cCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.......+..|...|++++|+|++ .+|++++.||+|++||+.. ...+..+.+
T Consensus 44 ------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~---------------------~~~~~~~~~ 95 (304)
T 2ynn_A 44 ------TQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEA 95 (304)
T ss_dssp ------TTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC
T ss_pred ------CCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEeC
Confidence 344556777899999999999998 8999999999999999987 677889999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|...|.+++|+|++. +|+||+.||+|++||++...... ..+.+|...|.+++|+|.+..+|++|+.|++|+|||++
T Consensus 96 h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE---QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEE---EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchh---hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999998 99999999999999998743333 56889999999999999655599999999999999999
Q ss_pred CCCCceEEe-ecCCCCEEEEEEcC--CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSF-KAHNADVNVISWNR--CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~-~~h~~~V~~i~~s~--~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. .+...+ ..|...|+.++|+| ++.+++.+.. |+.|++||.+++.
T Consensus 172 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 172 QS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (304)
T ss_dssp CS-SCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTE
T ss_pred CC-CccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCc
Confidence 87 444454 56778899999987 6678887766 9999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=223.52 Aligned_cols=201 Identities=18% Similarity=0.252 Sum_probs=173.0
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-|..++.|.|+. .+|+.|. .++.|.||++.
T Consensus 109 ~~V~~~~~~p~~-----------~~l~s~s-----~Dg~i~vwd~~---------------------------------- 138 (410)
T 1vyh_C 109 SPVTRVIFHPVF-----------SVMVSAS-----EDATIKVWDYE---------------------------------- 138 (410)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----SSSCEEEEETT----------------------------------
T ss_pred CcEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC----------------------------------
Confidence 466778887774 3677777 46789999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
...+...+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ..++.++.
T Consensus 139 -------~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~---------------------~~~~~~~~ 189 (410)
T 1vyh_C 139 -------TGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQG---------------------FECIRTMH 189 (410)
T ss_dssp -------TCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTS---------------------SCEEECCC
T ss_pred -------CCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------------------CceeEEEc
Confidence 222335667899999999999998 7999999999999999976 56778889
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|...|.+++|+|++. +|++|+.|++|++||+++ +... ..+.+|...|.+++|+|++. +|++|+.|++|+|||+
T Consensus 190 ~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~-~~~~---~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT-GYCV---KTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVV 263 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-CcEE---EEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEEC
Confidence 9999999999999998 999999999999999987 4444 67889999999999999998 9999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCC--------------------CCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRC--------------------WLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~--------------------~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+++ .+...+..|...|++++|+|+ +.+++.+.. |+.|++||.+++.
T Consensus 264 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~----D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 264 ATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR----DKTIKMWDVSTGM 329 (410)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----TSEEEEEETTTTE
T ss_pred CCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 987 777888999999999999996 556777765 8999999998764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=213.52 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=153.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.......+..|...+.+++|+|++ .++++++.+|.|++|++.. ......+..|...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~---------------------~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVES---------------------GKKEYSLDTRGKFIL 168 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTT---------------------CSEEEEEECSSSCEE
T ss_pred CCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCC---------------------CceeEEecCCCceEE
Confidence 334556667899999999999999 7999999999999999987 566778888999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+|++. +|++|+.||.|++||+++ ++.+ ..+.+|...|.+++|+|++. +|++|+.|++|+|||++.. ..+
T Consensus 169 ~~~~spdg~-~lasg~~dg~i~iwd~~~-~~~~---~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~-~~~ 241 (321)
T 3ow8_A 169 SIAYSPDGK-YLASGAIDGIINIFDIAT-GKLL---HTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA-NLA 241 (321)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTT-TEEE---EEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC-CEE
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEECCC-CcEE---EEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc-cee
Confidence 999999998 999999999999999987 4544 56889999999999999998 9999999999999999987 677
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+|...|++++|+|++.+|+.+.. |+.|++|+..++.
T Consensus 242 ~~~~~h~~~v~~~~~sp~~~~l~s~s~----D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCPDDTHFVSSSS----DKSVKVWDVGTRT 281 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE
T ss_pred EEEcCCCCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCE
Confidence 888999999999999999999988876 8999999998765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=213.01 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=145.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.......+.+|.+.|++++|+|++ .++++++.||.|++||+.. ..++.++.+|...|.
T Consensus 173 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~---------------------~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 173 TGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVRE---------------------GMCRQTFTGHESDIN 230 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CSEEEEECCCSSCEE
T ss_pred CCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CeeEEEEcCCcCCEE
Confidence 344556777899999999999998 7999999999999999987 567788999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+++|+|++. +|++|+.||+|++||++. .... ..+ ..+...|.+++|+|++. +|++|+.||.|+|||+++. .
T Consensus 231 ~v~~~p~~~-~l~s~s~d~~v~iwd~~~-~~~~---~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~-~ 303 (340)
T 1got_B 231 AICFFPNGN-AFATGSDDATCRLFDLRA-DQEL---MTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA-D 303 (340)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTT-TEEE---EEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC-C
T ss_pred EEEEcCCCC-EEEEEcCCCcEEEEECCC-CcEE---EEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccC-c
Confidence 999999998 999999999999999987 3332 222 23445799999999999 9999999999999999987 7
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.+..+.+|...|++++|+|++.+|+.+.. |+.|++|+
T Consensus 304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~----D~~i~iWd 340 (340)
T 1got_B 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSW----DSFLKIWN 340 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEEC
T ss_pred EeeEeecCCCcEEEEEEcCCCCEEEEEcC----CccEEecC
Confidence 77888999999999999999999998876 99999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=219.96 Aligned_cols=198 Identities=18% Similarity=0.312 Sum_probs=169.4
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+. .+|+.|+ .++.|.||++.
T Consensus 193 ~~V~~v~~~p~~-----------~~l~s~s-----~D~~i~~wd~~---------------------------------- 222 (410)
T 1vyh_C 193 HNVSSVSIMPNG-----------DHIVSAS-----RDKTIKMWEVQ---------------------------------- 222 (410)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----TTSEEEEEETT----------------------------------
T ss_pred CCEEEEEEeCCC-----------CEEEEEe-----CCCeEEEEECC----------------------------------
Confidence 355667777763 3677776 46789999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.......+.+|...|+++.++|++ .++++++.||.|++||+.. ......+.
T Consensus 223 -------~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~---------------------~~~~~~~~ 273 (410)
T 1vyh_C 223 -------TGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT---------------------KECKAELR 273 (410)
T ss_dssp -------TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEEC
T ss_pred -------CCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CceeeEec
Confidence 333446677999999999999999 8999999999999999987 56678899
Q ss_pred CCCCceEEEEeCCC--------------------CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC
Q 018235 227 GHKDEGYAIDWNPI--------------------TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (359)
Q Consensus 227 ~h~~~v~~l~~sp~--------------------~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (359)
+|...+.+++|+|. +. +|++|+.|++|++||+++ +... ..+.+|...|.+++|+|
T Consensus 274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~-~~~~---~~~~~h~~~v~~v~~~~ 348 (410)
T 1vyh_C 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVST-GMCL---MTLVGHDNWVRGVLFHS 348 (410)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTT-TEEE---EEEECCSSCEEEEEECS
T ss_pred CCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCC-CceE---EEEECCCCcEEEEEEcC
Confidence 99999999999996 44 899999999999999987 4444 57889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++. +|++|+.||+|+|||++++ .++..+.+|...|++++|+|++.+|+.+.. |+.|++|+.+
T Consensus 349 ~g~-~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~----D~~i~vW~~r 410 (410)
T 1vyh_C 349 GGK-FILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSV----DQTVKVWECR 410 (410)
T ss_dssp SSS-CEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEET----TSEEEEEC--
T ss_pred CCC-EEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeC----CCcEEEEeCC
Confidence 999 8999999999999999987 788889999999999999999999998876 9999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=216.38 Aligned_cols=171 Identities=16% Similarity=0.277 Sum_probs=148.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
....+|.+.|++++|+|++ .+|++++.||.|+|||+.. ..++..+.+|...|++++|+
T Consensus 133 ~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~---------------------~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQ---------------------KAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEEC
T ss_pred eccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEcCCCCCEEEEEEc
Confidence 4566899999999999999 8999999999999999987 57788899999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+++..+|++++.||+|++||++++ +... ...+..|...|.+++|+|++..+|++|+.|+.|+|||++++ .++..+.+
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~-~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~ 267 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKP-KPAT-RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAV 267 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSS-SCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECC
T ss_pred cCCCceeeeeccCCceEEEECCCC-ceee-eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEec
Confidence 998778999999999999999874 3321 12345677889999999998779999999999999999998 78888999
Q ss_pred CCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|...|++++|+|++. +|+.+.. |+.|++||..++++
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~----D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISE----DCTVAVLDADFSEV 304 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEET----TSCEEEECTTSCEE
T ss_pred cceeEEEEEEcCCCCCEEEEEeC----CCEEEEEECCCCcE
Confidence 999999999999985 5665554 89999999988753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=216.32 Aligned_cols=202 Identities=18% Similarity=0.201 Sum_probs=166.5
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|. .++.|.||++.
T Consensus 139 ~~~V~~v~~spdg-----------~~l~sgs-----~dg~v~iwd~~--------------------------------- 169 (357)
T 4g56_B 139 DDIVKTLSVFSDG-----------TQAVSGG-----KDFSVKVWDLS--------------------------------- 169 (357)
T ss_dssp SSCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 4567788888875 4677777 46689999872
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE--
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-- 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (359)
.+.....+.+|.+.|++++|+|.+..++++++.||.|+|||+.. .++..
T Consensus 170 --------~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~---------------------~~~~~~~ 220 (357)
T 4g56_B 170 --------QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK---------------------PKPATRI 220 (357)
T ss_dssp --------TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS---------------------SSCBCBC
T ss_pred --------CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC---------------------Cceeeee
Confidence 44566677899999999999999877999999999999999987 23322
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+..|...+.+++|+|++..+|++|+.|+.|++||+++ +... ..+.+|...|++++|+|++..+||+|+.|++|+|
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~---~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSA---QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGC---EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCC-CcEe---EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 34456778999999999766899999999999999987 4443 6788999999999999998769999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
||++++ +. ....+|...|++|+|+| ++.+|+.+.. |+.|++|++.+
T Consensus 297 wd~~~~-~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~----Dg~v~iW~~~~ 343 (357)
T 4g56_B 297 LDADFS-EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGW----DHKVLHHHLPS 343 (357)
T ss_dssp ECTTSC-EE-EEECCCSSCEEEEEECSSSTTEEEEEET----TSCEEEEECC-
T ss_pred EECCCC-cE-eEECCCCCCEEEEEEeCCCCCEEEEEcC----CCeEEEEECCC
Confidence 999986 44 44558999999999998 6788877765 99999999754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=206.59 Aligned_cols=201 Identities=17% Similarity=0.316 Sum_probs=172.4
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 24 ~~v~~~~~s~~~-----------~~l~s~~-----~dg~i~iw~~~---------------------------------- 53 (312)
T 4ery_A 24 KAVSSVKFSPNG-----------EWLASSS-----ADKLIKIWGAY---------------------------------- 53 (312)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT----------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEee-----CCCeEEEEeCC----------------------------------
Confidence 466788888875 4777777 46689999762
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.......+.+|...|++++|+|++ .+|++++.||.|++||+.. ..++..+.
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~---------------------~~~~~~~~ 104 (312)
T 4ery_A 54 -------DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSS---------------------GKCLKTLK 104 (312)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEE
T ss_pred -------CcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEc
Confidence 223445667899999999999998 8999999999999999987 56778899
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|...+.+++|+|++. +|++|+.||.|++||+++ +... ..+..|...|.+++|+|++. +|++|+.||.|++||+
T Consensus 105 ~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 105 GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKT-GKCL---KTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDT 178 (312)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT-CCEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CEEE---EEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEC
Confidence 9999999999999998 999999999999999987 4443 56788999999999999998 9999999999999999
Q ss_pred CCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+++ ..+..+ ..+...+.+++|+|++.+++.+.. ++.|++||.+++.
T Consensus 179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 225 (312)
T 4ery_A 179 ASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGK 225 (312)
T ss_dssp TTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTE
T ss_pred CCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCc
Confidence 987 555555 567788999999999999998876 8999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=214.22 Aligned_cols=205 Identities=14% Similarity=0.258 Sum_probs=167.9
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
++..+.|-|+. .+|+.|. .++.|.||++..
T Consensus 18 ~v~~l~~sp~g-----------~~las~~-----~D~~i~iw~~~~---------------------------------- 47 (345)
T 3fm0_A 18 RCWFLAWNPAG-----------TLLASCG-----GDRRIRIWGTEG---------------------------------- 47 (345)
T ss_dssp CEEEEEECTTS-----------SCEEEEE-----TTSCEEEEEEET----------------------------------
T ss_pred cEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEcCC----------------------------------
Confidence 57788998885 3677776 467899999841
Q ss_pred cCCCCCCCeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 148 EEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 148 ~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
...... ....+|.+.|++++|+|++ .+||+++.|++|+||++... ....+..+.
T Consensus 48 -----~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~-------------------~~~~~~~~~ 102 (345)
T 3fm0_A 48 -----DSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQD-------------------DFECVTTLE 102 (345)
T ss_dssp -----TEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC--------------------EEEEEEEC
T ss_pred -----CcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCC-------------------CeEEEEEcc
Confidence 011112 2235799999999999999 89999999999999998762 124567889
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|...|.+++|+|++. +|++|+.|++|++||++...... ....+.+|...|.+++|+|++. +|++|+.|++|+|||+
T Consensus 103 ~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYE-CVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYRE 179 (345)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEE-EEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEE
T ss_pred CCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeE-EEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEe
Confidence 9999999999999998 99999999999999998743221 1256788999999999999998 9999999999999999
Q ss_pred CCCC-CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 307 RVGK-SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 307 r~~~-~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+... .+...+.+|...|++++|+|++.+|+.+.. |+.|++|+..
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW~~~ 224 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIWRQY 224 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEEE
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEeccc
Confidence 8762 234567899999999999999999988876 9999999853
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-26 Score=207.93 Aligned_cols=207 Identities=14% Similarity=0.188 Sum_probs=172.3
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+. ..+|+.|+ .++.|.||++..-.
T Consensus 18 ~~V~~l~~~~~~----------~~~l~s~s-----~D~~v~~W~~~~~~------------------------------- 51 (319)
T 3frx_A 18 GWVTSLATSAGQ----------PNLLLSAS-----RDKTLISWKLTGDD------------------------------- 51 (319)
T ss_dssp SCEEEEEECSSC----------TTEEEEEE-----TTSEEEEEEEEEET-------------------------------
T ss_pred ceEEEEEccCCC----------ccEEEEec-----CCccEEEecCCCCC-------------------------------
Confidence 355677787753 13677777 57899999984100
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.+.......+.+|...|++++|+|++ .++++++.||+|+|||+.. .+++..+.
T Consensus 52 -----~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~---------------------~~~~~~~~ 104 (319)
T 3frx_A 52 -----QKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVAT---------------------GETYQRFV 104 (319)
T ss_dssp -----TEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEE
T ss_pred -----ccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CCeeEEEc
Confidence 01223345677999999999999999 8999999999999999987 56778899
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-----CEEEEEeCCCcE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-----DVFASCSVDGHI 301 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-----~~las~s~Dg~I 301 (359)
+|...|.+++|+|++. +|++|+.|++|++||++. ... ..+.+|...|.+++|+|... .+|++++.|+.|
T Consensus 105 ~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 105 GHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp CCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEE---EEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred cCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeE---EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 9999999999999998 999999999999999964 333 56789999999999999642 389999999999
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++||++.. .....+.+|...|++++|+|++.+|+.+.. |+.|++||..++.
T Consensus 179 ~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~ 229 (319)
T 3frx_A 179 KAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKK 229 (319)
T ss_dssp EEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE
T ss_pred EEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 99999987 667778899999999999999999998876 9999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=208.32 Aligned_cols=169 Identities=23% Similarity=0.357 Sum_probs=145.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|++++|+|++ .++++++.||+|+|||+.. ...+..+.+|...|+++
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~---------------------~~~~~~~~~h~~~v~~v 124 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRT---------------------GTTYKRFVGHQSEVYSV 124 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTS---------------------SCEEEEEECCCSCEEEE
T ss_pred cccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEcCCCCcEEEE
Confidence 3446678999999999999998 7999999999999999987 56778899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC---------CEEEEEeCCCcEEEEEC
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP---------DVFASCSVDGHIAIWDT 306 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~---------~~las~s~Dg~I~iwD~ 306 (359)
+|+|++. +|++|+.|++|++||+.. .. ........+|...|.+++|+|.+. .+|++++.||.|+|||.
T Consensus 125 ~~sp~~~-~l~s~~~d~~i~~wd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 201 (343)
T 2xzm_R 125 AFSPDNR-QILSAGAEREIKLWNILG-EC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201 (343)
T ss_dssp EECSSTT-EEEEEETTSCEEEEESSS-CE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred EECCCCC-EEEEEcCCCEEEEEeccC-Cc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence 9999998 999999999999999974 22 211233457999999999999872 38999999999999995
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+. .....+.+|...|++++|+|++.+|+.+.. |+.|++||...
T Consensus 202 ~~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~v~iwd~~~ 244 (343)
T 2xzm_R 202 NF--QIRYTFKAHESNVNHLSISPNGKYIATGGK----DKKLLIWDILN 244 (343)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTSSEEEEEET----TCEEEEEESSC
T ss_pred CC--ceeEEEcCccccceEEEECCCCCEEEEEcC----CCeEEEEECCC
Confidence 43 566678899999999999999999998876 99999999843
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-26 Score=208.34 Aligned_cols=168 Identities=18% Similarity=0.373 Sum_probs=146.7
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+.+|.+.|.+++|++.+ .+++++.||.|++||+.. ..++.++.+|...|.++
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~---------------------~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIET---------------------GQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred eeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCC---------------------CcEEEEEcCCCCceEEE
Confidence 4556778999999999999987 588899999999999987 56778899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+|++. +|++|+.||+|++||+++ +... ..+.+|...|++++|+|++. +|++|+.||+|+|||++.. ..+..
T Consensus 191 ~~~~~~~-~l~sg~~d~~v~~wd~~~-~~~~---~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~-~~~~~ 263 (340)
T 1got_B 191 SLAPDTR-LFVSGACDASAKLWDVRE-GMCR---QTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD-QELMT 263 (340)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTT-CSEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EEEEE
T ss_pred EECCCCC-EEEEEeCCCcEEEEECCC-CeeE---EEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC-cEEEE
Confidence 9999998 999999999999999987 4444 57889999999999999998 9999999999999999987 55555
Q ss_pred ee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+. .+...|.+++|+|++.+++.+.. ++.|++||..++.
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 303 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred EccCCcccceEEEEECCCCCEEEEECC----CCeEEEEEcccCc
Confidence 53 33457999999999999998876 8999999987654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=210.52 Aligned_cols=171 Identities=16% Similarity=0.307 Sum_probs=135.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
|.+.|++++|+|++ .+||+++.||+|+||++....... ....++..+.+|...|++++|+|++.
T Consensus 57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~g~- 120 (330)
T 2hes_X 57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT--------------FEMDLLAIIEGHENEVKGVAWSNDGY- 120 (330)
T ss_dssp CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------------CCCEEEEEEC----CEEEEEECTTSC-
T ss_pred ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc--------------ccceeEEEEcCCCCcEEEEEECCCCC-
Confidence 99999999999998 899999999999999986411000 01345678899999999999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-CceEEeecCCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~ 322 (359)
+|++|+.|++|++||++..+........+.+|...|.+++|+|++. +|++|+.|++|+|||.+... .++..+.+|...
T Consensus 121 ~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 9999999999999999643321111256789999999999999998 99999999999999988652 356778899999
Q ss_pred EEEEEEcCC--CCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRC--WLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~--~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|++++|+|+ +..++.+.. |+.|++|+...
T Consensus 200 v~~~~~~~~~~~~~l~s~s~----D~~v~iw~~~~ 230 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSD----DSTVRVWKYMG 230 (330)
T ss_dssp EEEEEECCSSSSCEEEEEET----TSCEEEEEEEE
T ss_pred EEEEEecCCCCeeEEEEEeC----CCeEEEEEecC
Confidence 999999998 556776655 89999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=205.46 Aligned_cols=208 Identities=17% Similarity=0.219 Sum_probs=164.8
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
+..++.|-|+. .+|+.|. .++.|+||++..
T Consensus 11 ~V~~~~~s~~g-----------~~las~s-----~D~~v~iw~~~~---------------------------------- 40 (297)
T 2pm7_B 11 MIHDAVMDYYG-----------KRMATCS-----SDKTIKIFEVEG---------------------------------- 40 (297)
T ss_dssp CEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEBCS----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEe-----CCCEEEEEecCC----------------------------------
Confidence 55677777774 4778777 577899998831
Q ss_pred cCCCCCCCeEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
....+...+.+|.+.|++++|+|. ...+|||++.||+|+|||+... ....+..+.
T Consensus 41 -----~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~ 96 (297)
T 2pm7_B 41 -----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG-------------------RWSQIAVHA 96 (297)
T ss_dssp -----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS-------------------CBCCCEEEC
T ss_pred -----CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC-------------------ceEEEEEee
Confidence 012233567799999999999864 2379999999999999999761 124567788
Q ss_pred CCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC------------CCEE
Q 018235 227 GHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE------------PDVF 292 (359)
Q Consensus 227 ~h~~~v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~------------~~~l 292 (359)
+|...|.+++|+|+ +. +|++|+.||+|++||++...... ...+.+|...|.+++|+|.+ ..+|
T Consensus 97 ~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 99999999999998 65 99999999999999998743322 24577899999999999973 2389
Q ss_pred EEEeCCCcEEEEECCCCCC---ceEEeecCCCCEEEEEEcCCC---CeEEEEeeecccceEEEEEeCcCC
Q 018235 293 ASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRCW---LAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~s~~~---~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|+|+.|++|+|||++.... ....+.+|...|++++|+|++ .+|+.+.. |+.|++|+...+
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~----D~~v~iWd~~~~ 239 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ----DRTCIIWTQDNE 239 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET----TSCEEEEEESST
T ss_pred EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC----CCcEEEEEeCCC
Confidence 9999999999999987622 345678999999999999985 66776655 899999998753
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=207.29 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=144.2
Q ss_pred CeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..+...+.+|...|+++.++|.. ..+|++++.||.|++||+.. ..++..+.+|...|.
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~---------------------~~~~~~~~~h~~~v~ 244 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---------------------GQCVQAFETHESDVN 244 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC---------------------CcEEEEecCCCCCeE
Confidence 34556777999999999998853 27999999999999999987 577888999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc--CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+++|+|++. +|++|+.|++|++||++.. ... ..+. .+...+.+++|+|++. +|++|+.|+.|+|||++++ .
T Consensus 245 ~v~~~p~~~-~l~s~s~D~~v~lwd~~~~-~~~---~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~-~ 317 (354)
T 2pbi_B 245 SVRYYPSGD-AFASGSDDATCRLYDLRAD-REV---AIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG-S 317 (354)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTT-EEE---EEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC-S
T ss_pred EEEEeCCCC-EEEEEeCCCeEEEEECCCC-cEE---EEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC-c
Confidence 999999998 9999999999999999873 322 2232 2345789999999999 9999999999999999987 6
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.+..+.+|...|++++|+|++.+|+.+.. |+.|++|+
T Consensus 318 ~~~~l~~h~~~v~~l~~spdg~~l~sgs~----D~~v~vW~ 354 (354)
T 2pbi_B 318 RVSILFGHENRVSTLRVSPDGTAFCSGSW----DHTLRVWA 354 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEET----TSEEEEEC
T ss_pred eEEEEECCCCcEEEEEECCCCCEEEEEcC----CCCEEecC
Confidence 77888999999999999999999998876 99999995
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=205.67 Aligned_cols=208 Identities=19% Similarity=0.212 Sum_probs=173.1
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|. .++.|.||++.
T Consensus 64 ~~~V~~~~~s~d~-----------~~l~s~s-----~Dg~v~vWd~~--------------------------------- 94 (354)
T 2pbi_B 64 GNKVLCMDWCKDK-----------RRIVSSS-----QDGKVIVWDSF--------------------------------- 94 (354)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCeEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3467889998885 4788887 57799999862
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+..|...|.+++|+|++ .++|+++.|+.|++|++....... .......+
T Consensus 95 --------~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~ 150 (354)
T 2pbi_B 95 --------TTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV 150 (354)
T ss_dssp --------TCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE
T ss_pred --------CCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc---------------ccccceee
Confidence 223335566789999999999999 899999999999999987521100 12345677
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIW 304 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iw 304 (359)
.+|...+.+++|+|++. .|++|+.|++|++||+++ ++.. ..+.+|...|.+++|+|.. ..+|++|+.||+|++|
T Consensus 151 ~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~-~~~~---~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVES-GQLL---QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC-CeEE---EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 89999999999999998 999999999999999987 4544 6788999999999999853 2399999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|++++ .++..+..|...|++++|+|++.+++.+.. |+.|++||.+.+
T Consensus 226 d~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~ 272 (354)
T 2pbi_B 226 DMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRAD 272 (354)
T ss_dssp ETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTT
T ss_pred ECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCC
Confidence 99998 788888999999999999999999988876 899999998765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=201.79 Aligned_cols=171 Identities=21% Similarity=0.325 Sum_probs=154.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+...+.+|.+.|++++|+|++ .++|+++.||.|++|++.. .+....+.+|...|.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~ 69 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGIS 69 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred CceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceE
Confidence 445667888999999999999999 7999999999999999876 566778899999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+|++. +|++|+.||.|++||+++ +... ..+.+|...|.+++|+|++. +|++|+.|+.|++||++++ .++
T Consensus 70 ~~~~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~---~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~ 142 (312)
T 4ery_A 70 DVAWSSDSN-LLVSASDDKTLKIWDVSS-GKCL---KTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTG-KCL 142 (312)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC-CEE
T ss_pred EEEEcCCCC-EEEEECCCCEEEEEECCC-CcEE---EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-EEE
Confidence 999999998 999999999999999987 4444 56889999999999999998 9999999999999999987 778
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..|...|.+++|+|++.+++.+.. ++.|++||.+++.
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~ 182 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQ 182 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc
Confidence 888899999999999999999988876 8899999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=212.23 Aligned_cols=216 Identities=18% Similarity=0.235 Sum_probs=174.1
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|+ .+..|.||++.
T Consensus 66 ~~~V~~~~~sp~~-----------~~l~s~s-----~D~~v~iWd~~--------------------------------- 96 (380)
T 3iz6_a 66 SGKVYSLDWTPEK-----------NWIVSAS-----QDGRLIVWNAL--------------------------------- 96 (380)
T ss_dssp SSCEEEEEECTTS-----------SCEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred ccEEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 4567889999885 4688887 46799999872
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+..|...|.+++|+|++ .++|+++.|+.|+||++....... ........+
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~--------------~~~~~~~~~ 153 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD--------------GNMPVSRVL 153 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC--------------CSSTTCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc--------------CCccceeec
Confidence 334556777899999999999999 899999999999999997621100 012344568
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
.+|...+.++.|+|.+..+|+||+.|++|++||++++..... ......+|...|.+++|+|....+|++|+.|++|+||
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 899999999999998766899999999999999987432211 0111267999999999998555599999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++....++..+.+|...|++++|+|++.+++.+.. |+.|++||.+++.
T Consensus 234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFDMRTGH 282 (380)
T ss_dssp ETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEETTTTE
T ss_pred ECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEECCCCc
Confidence 999654677888999999999999999999988876 9999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=210.38 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=141.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|...|.++.|++.+..+|++|+.||+|++||++. ...++..+.+|...|++++|+|++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI--------------------TSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT--------------------TCCCCEEECCCSSCCCEEEECTTS
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC--------------------CCcceEEECCcCCCeEEEEEecCC
Confidence 479999999999885558999999999999999985 256788999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccC-------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
. +|+||+.||+|++||++++ ... ..+.. +...|.+++|+|++. +|++|+.||.|+|||+..+ ..+.
T Consensus 262 ~-~l~s~s~D~~i~lwd~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~-~~~~ 334 (380)
T 3iz6_a 262 Q-RFGTGSDDGTCRLFDMRTG-HQL---QVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLA-EMVL 334 (380)
T ss_dssp S-EEEEECSSSCEEEEETTTT-EEE---EEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTC-CEEE
T ss_pred C-eEEEEcCCCeEEEEECCCC-cEE---EEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCC-ceEE
Confidence 8 9999999999999999873 332 22222 334589999999999 9999999999999999987 5555
Q ss_pred Ee----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SF----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+ .+|...|++++|+|++.+|+.+.. |+.|++|+...+.
T Consensus 335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSW----DKNLKIWAFSGHR 377 (380)
T ss_dssp EECCSCSSCCCCCCEEEECSSSSEEEEECT----TSCEEEEECCSSS
T ss_pred EEecccCCCCCceEEEEECCCCCEEEEeeC----CCCEEEEecCCCc
Confidence 55 679999999999999999988876 9999999987654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=218.08 Aligned_cols=238 Identities=10% Similarity=0.041 Sum_probs=170.8
Q ss_pred hcccccCcceeEEEEeccCCCCcccCCceEEEEEeec--------------CCCCCCceEEEEEeeccCCcccCCCCCCC
Q 018235 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQ--------------AEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (359)
Q Consensus 61 ~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~--------------~~~~~~n~l~i~~~~~l~~~~~~~~~~~~ 126 (359)
..+.++.+..+++|.|+..+.... ...++|++|+. ++...++.|.||++..-
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~--~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~------------ 193 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIG--KDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS------------ 193 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSC--SSEEEEEEEEEC------------------CEEEEEEEEETT------------
T ss_pred EEEECCCceeEEEecccCCCCccC--cCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC------------
Confidence 345568899999999985321100 01368888873 33456788999988410
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCC-----CcEEEEEeCCCcEEEEECCCCccc
Q 018235 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-----PHICASWADTGHVQVWDLRSHLNA 201 (359)
Q Consensus 127 ~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-----~~~lat~s~dg~V~iwd~~~~~~~ 201 (359)
+ ....+...+..|.+.|++++|+|.+ ..+||+++.||+|+|||+......
T Consensus 194 ---------------------~----~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 194 ---------------------T----LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp ---------------------T----CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred ---------------------C----CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 0 0122234456788999999999972 269999999999999999763110
Q ss_pred cccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE
Q 018235 202 LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281 (359)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 281 (359)
..... ....+..++.+|...|++++|++.+ .|++|+.||+|++||++++..+. ..+.+|...|.+
T Consensus 249 ~~~~~----------~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~---~~~~~H~~~V~s 313 (524)
T 2j04_B 249 VHVFK----------MCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPS---FYDQVHDSYILS 313 (524)
T ss_dssp SSEEE----------CCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCS---EEEECSSSCEEE
T ss_pred cccce----------eecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCce---EEeecccccEEE
Confidence 00000 0135667899999999999999853 89999999999999998643322 457899999999
Q ss_pred E--EecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 282 L--QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 282 v--~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
| .|+|++..+|||||.|++|+|||++++ .++..+.+|.. .|++++|+|++..++.+.. +..|++|+.+.+.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~ 388 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAF 388 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTT
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccc
Confidence 9 578887349999999999999999987 56666666653 5889999999998887765 8889999998765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=200.81 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=170.7
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
=+..++.|.|+. .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~iw~~~~~-------------------------------- 43 (351)
T 3f3f_A 12 DLVHDVVYDFYG-----------RHVATCS-----SDQHIKVFKLDKD-------------------------------- 43 (351)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECSS--------------------------------
T ss_pred cceeEEEEcCCC-----------CEEEEee-----CCCeEEEEECCCC--------------------------------
Confidence 467788888875 4777777 4679999998310
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
.....+...+.+|.+.|++++|+|. + .+|++++.||.|++||+......... ....++..
T Consensus 44 -----~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~------------~~~~~~~~ 105 (351)
T 3f3f_A 44 -----TSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSG------------RRWNKLCT 105 (351)
T ss_dssp -----SCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSS------------CSEEEEEE
T ss_pred -----CCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccc------------cCcceeee
Confidence 0133455677789999999999994 5 79999999999999999872110000 01145778
Q ss_pred ecCCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcce------------------------------------
Q 018235 225 FGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWN------------------------------------ 266 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~------------------------------------ 266 (359)
+.+|...+.+++|+|+ +. +|++|+.||.|++||++......
T Consensus 106 ~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 184 (351)
T 3f3f_A 106 LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 184 (351)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE
T ss_pred ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE
Confidence 8899999999999999 77 99999999999999987532100
Q ss_pred --------------------ecCccccCCCCCeEEEEecCCCC---CEEEEEeCCCcEEEEECCCCC-------------
Q 018235 267 --------------------VDPNPFIGHSASVEDLQWSPTEP---DVFASCSVDGHIAIWDTRVGK------------- 310 (359)
Q Consensus 267 --------------------~~~~~~~~h~~~V~~v~~sp~~~---~~las~s~Dg~I~iwD~r~~~------------- 310 (359)
.....+.+|...|.+++|+|++. .+|++|+.||.|+|||++...
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 264 (351)
T 3f3f_A 185 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264 (351)
T ss_dssp EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee
Confidence 00234567999999999999982 399999999999999998741
Q ss_pred --------------------------------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 311 --------------------------------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 311 --------------------------------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..+.+|...|++++|+|++.+|+.+.. |+.|++|+..++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD----DGKVRLWKATYSN 339 (351)
T ss_dssp --------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET----TSCEEEEEECTTS
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC----CCcEEEEecCcCc
Confidence 244556789999999999999999998876 8999999998764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=214.45 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=140.8
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGY 233 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~ 233 (359)
.......+|.+.|++|+|+|.+..+|+|++.||+|+|||+... ....... .+...+.
T Consensus 155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~---------------------~~~~~~~~~~~~~~~~ 213 (435)
T 4e54_B 155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN---------------------ILRVFASSDTINIWFC 213 (435)
T ss_dssp CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---------------------EEEEEECCSSCSCCCC
T ss_pred eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---------------------ceeEEeccCCCCccEE
Confidence 3445677999999999999965589999999999999999761 1111222 2334678
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC--
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-- 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-- 311 (359)
+++|+|++. +|++|+.||.|++||++. ..+ ..+.+|...|.+++|+|.+..+|++|+.|++|+|||++....
T Consensus 214 ~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~---~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 214 SLDVSASSR-MVVTGDNVGNVILLNMDG--KEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CEEEETTTT-EEEEECSSSBEEEEESSS--CBC---CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEECCCCC-EEEEEeCCCcEeeeccCc--cee---EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 999999998 999999999999999864 222 568899999999999999988999999999999999998622
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+....+|...|++++|+|++.+|+.+.. |+.|++|+...+.
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~ 329 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWD 329 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSS
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCc
Confidence 22334689999999999999999998876 8999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=220.28 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=151.2
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
......+.+|.+.|++++|+|++ .+|+||+.||+|+|||+.. ...+..+.+|...|.+
T Consensus 420 ~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~---------------------~~~~~~~~~h~~~v~~ 477 (694)
T 3dm0_A 420 GVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAA---------------------GVSTRRFVGHTKDVLS 477 (694)
T ss_dssp CEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEE
T ss_pred ccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CcceeEEeCCCCCEEE
Confidence 34556778999999999999999 8999999999999999987 5667789999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEECCCCCCce
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++|+|++. +|+||+.|++|++||+.. ...........+|...|.+++|+|++. .+|++|+.|++|+|||++.. ...
T Consensus 478 ~~~s~~~~-~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~ 554 (694)
T 3dm0_A 478 VAFSLDNR-QIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLR 554 (694)
T ss_dssp EEECTTSS-CEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEE
T ss_pred EEEeCCCC-EEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEE
Confidence 99999998 999999999999999865 222211233467999999999999873 48999999999999999987 677
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+|...|++++|+|++.+++.+.. |+.|++||.+++.
T Consensus 555 ~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 555 STLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK 594 (694)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 788999999999999999999998876 8999999998765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=218.62 Aligned_cols=189 Identities=17% Similarity=0.289 Sum_probs=150.0
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc----cccccccc-------------ccCCCC-----C
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN----ALAESETI-------------VGQGAP-----Q 215 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~----~~~~~~~~-------------~~~~~~-----~ 215 (359)
...+.+|.+.|++++|+|++ .+||+|+.||+|+|||+..... .+...... .....+ .
T Consensus 52 ~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred CeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 35567999999999999999 8999999999999999853211 11110000 000000 0
Q ss_pred C---CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE
Q 018235 216 V---SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 216 ~---~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
+ ........+.+|...|++++|+|++..+|++|+.|++|++||... .+.. ..+.+|...|.+++|+|++. +|
T Consensus 131 v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-~~~~---~~l~~H~~~V~~v~fspdg~-~l 205 (611)
T 1nr0_A 131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFK---STFGEHTKFVHSVRYNPDGS-LF 205 (611)
T ss_dssp EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEE---EEECCCSSCEEEEEECTTSS-EE
T ss_pred EEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-CeEe---eeeccccCceEEEEECCCCC-EE
Confidence 0 123445567899999999999999875699999999999999866 4443 57889999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCCceEEee-------cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFK-------AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~-------~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+|+.|++|+|||++++ .++..+. +|...|++++|+|++.+|+.+.. |+.|++||..++.
T Consensus 206 as~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLK 272 (611)
T ss_dssp EEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE
T ss_pred EEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCc
Confidence 99999999999999987 6666663 79999999999999999988876 9999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=211.62 Aligned_cols=209 Identities=12% Similarity=0.153 Sum_probs=161.7
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-|..++.|.|+. .+|++|+ .++.|.||++..
T Consensus 12 ~~v~~~~~s~~g-----------~~l~~~~-----~d~~i~iw~~~~--------------------------------- 42 (377)
T 3dwl_C 12 KPSYEHAFNSQR-----------TEFVTTT-----ATNQVELYEQDG--------------------------------- 42 (377)
T ss_dssp SCCSCCEECSSS-----------SEEECCC-----SSSCBCEEEEET---------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEec-----CCCEEEEEEccC---------------------------------
Confidence 367788888875 3777776 467899999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..+.....+.+|.+.|++++|+|++ .+|++++.||.|+|||+.... ...+...+.
T Consensus 43 ------~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~ 97 (377)
T 3dwl_C 43 ------NGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG------------------TWKQTLVLL 97 (377)
T ss_dssp ------TEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------------------------CCCCEEECC
T ss_pred ------CceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC------------------ceeeeeEec
Confidence 0113445566899999999999998 789999999999999998721 024677888
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
+|...+.+++|+|++. +|++|+.|+.|++||++....+. ....+.+ |...|.+++|+|++. +|++++.|+.|++||
T Consensus 98 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 98 RLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWW-VSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLS 174 (377)
T ss_dssp CCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CC-CCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEE
T ss_pred ccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccce-eeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEE
Confidence 9999999999999998 99999999999999998743211 1245666 999999999999998 999999999999999
Q ss_pred CCCC-----------------CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVG-----------------KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~-----------------~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.. ..++..+ .|...|++++|+|++.+|+.+.. ++.|++|+..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 175 AYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH----DSSVTIAYPSAPE 238 (377)
T ss_dssp ECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET----TTEEC-CEECSTT
T ss_pred EEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC----CCcEEEEECCCCC
Confidence 8632 1234444 89999999999999999998876 8999999998775
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=202.99 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=166.0
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|-|+. .+|+.|+ .++.|+||++..
T Consensus 14 ~~V~~v~~s~~g-----------~~lasgs-----~D~~v~lwd~~~--------------------------------- 44 (316)
T 3bg1_A 14 DMIHDAQMDYYG-----------TRLATCS-----SDRSVKIFDVRN--------------------------------- 44 (316)
T ss_dssp CCEEEEEECGGG-----------CEEEEEE-----TTTEEEEEEEET---------------------------------
T ss_pred CeEEEeeEcCCC-----------CEEEEEe-----CCCeEEEEEecC---------------------------------
Confidence 356778888875 4788887 577999999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
....+...+.+|.+.|++++|+|. ...+|||++.||+|+|||+... ...+...+
T Consensus 45 ------~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~ 99 (316)
T 3bg1_A 45 ------GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG-------------------TWEKSHEH 99 (316)
T ss_dssp ------TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS-------------------CCCEEEEE
T ss_pred ------CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC-------------------cceEEEEc
Confidence 022344677899999999999863 2379999999999999999761 12456678
Q ss_pred cCCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC---------------
Q 018235 226 GGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------- 288 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------- 288 (359)
.+|...|.+++|+|+ +. +|++|+.|++|++|+++....+.. ...+.+|...|.+++|+|+.
T Consensus 100 ~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177 (316)
T ss_dssp CCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEE-CCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred cCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcce-eeeeccccCCcceEEEccccCCccccccccccCcc
Confidence 899999999999998 55 899999999999999987433321 25577899999999999973
Q ss_pred -CCEEEEEeCCCcEEEEECCCCC--CceEEeecCCCCEEEEEEcCCC----CeEEEEeeecccceEEEEEeCcC
Q 018235 289 -PDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWNRCW----LAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 289 -~~~las~s~Dg~I~iwD~r~~~--~~~~~~~~h~~~V~~i~~s~~~----~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+|++|+.|++|+|||++... .++..+.+|...|++++|+|++ .+|+.+.. |+.|++|+...
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~----D~~v~iw~~~~ 247 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ----DGRVFIWTCDD 247 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET----TCEEEEEECSS
T ss_pred ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC----CCeEEEEEccC
Confidence 1389999999999999997542 2455678999999999999986 67777665 99999999865
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=201.97 Aligned_cols=213 Identities=13% Similarity=0.162 Sum_probs=159.6
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|+ .++.|.||++.... .
T Consensus 58 ~~~v~~v~~sp~~-----------~~las~s-----~D~~v~iw~~~~~~---~-------------------------- 92 (330)
T 2hes_X 58 KKAIRSVAWRPHT-----------SLLAAGS-----FDSTVSIWAKEESA---D-------------------------- 92 (330)
T ss_dssp CSCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEC----------------------------------
T ss_pred cCCEEEEEECCCC-----------CEEEEEe-----CCCcEEEEEcccCc---C--------------------------
Confidence 3467788898874 3677777 46789999873100 0
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
. .....+...+.+|.+.|++++|+|++ .+||+++.||+|+|||+..... ...++..+
T Consensus 93 -~----~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~-----------------~~~~~~~~ 149 (330)
T 2hes_X 93 -R----TFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE-----------------EYECISVL 149 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC-----------------CCEEEEEE
T ss_pred -c----cccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC-----------------CeEEEEEe
Confidence 0 01234456677999999999999998 8999999999999999954100 12456788
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCC--CCCEEEEEeCCCcEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIA 302 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~ 302 (359)
.+|...|.+++|+|++. +|+||+.|++|++||.+... ..+ ..+.+|...|.+++|+|+ +. +|++|+.|++|+
T Consensus 150 ~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~ 224 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECV---AVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVR 224 (330)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEE---EEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEE
Confidence 99999999999999998 99999999999999987631 222 568899999999999998 44 899999999999
Q ss_pred EEECCCCC-------CceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 303 IWDTRVGK-------SALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 303 iwD~r~~~-------~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|||++... .+...+.. |...|++++|++.+ +++.+.. |+.|++|+...+
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~----dg~v~iw~~~~~ 281 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA----DGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET----TSCEEEEEEETT
T ss_pred EEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC----CCEEEEEEcCCC
Confidence 99997641 12233333 89999999999765 5665554 889999997765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-25 Score=202.57 Aligned_cols=209 Identities=14% Similarity=0.229 Sum_probs=167.1
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|. .++.|.||++..
T Consensus 61 ~~~v~~~~~sp~g-----------~~l~s~s-----~D~~v~iw~~~~-------------------------------- 92 (345)
T 3fm0_A 61 QRTVRKVAWSPCG-----------NYLASAS-----FDATTCIWKKNQ-------------------------------- 92 (345)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEECC--------------------------------
T ss_pred CCcEEEEEECCCC-----------CEEEEEE-----CCCcEEEEEccC--------------------------------
Confidence 3467788888875 4777777 467899998730
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
........+.+|.+.|++++|+|++ .+||+++.||.|++||+.... ....+..+
T Consensus 93 -------~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~------------------~~~~~~~~ 146 (345)
T 3fm0_A 93 -------DDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEED------------------EYECVSVL 146 (345)
T ss_dssp -------C-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTS------------------CEEEEEEE
T ss_pred -------CCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCC------------------CeEEEEEe
Confidence 1223446778999999999999998 899999999999999997621 12345678
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+|...|.+++|+|++. +|++|+.|++|++|+.+. +.+. ....+.+|...|.+++|+|++. +|++|+.|++|+|||
T Consensus 147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~-~~~~-~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEE-DDWV-CCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWR 222 (345)
T ss_dssp CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEET-TEEE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecC-CCEE-EEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEec
Confidence 89999999999999998 999999999999999976 3322 1256789999999999999998 999999999999999
Q ss_pred CCCCC--------------CceEEee-cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 306 TRVGK--------------SALTSFK-AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 306 ~r~~~--------------~~~~~~~-~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+... .++..+. .|...|++++|+|++..++.+.. ++.+++|+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----d~~i~vw~~~~~ 284 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG----DDAIRVFQEDPN 284 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET----TSCEEEEEECTT
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC----CCeEEEEEeCCC
Confidence 75431 1223343 38889999999999999988876 889999986543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=202.07 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=149.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.-.+..++.+|.+.|++++|+|.++.+|+|++.||+|++|++...... ...++..+.+|...|.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~ 69 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQ 69 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEE
Confidence 344557888999999999999987789999999999999998652111 1345778999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+|++. +|+||+.|++|++||+.+ +... ..+.+|...|.+++|+|++. +|++|+.|++|+|||++. .++
T Consensus 70 ~~~~s~dg~-~l~s~s~D~~v~~wd~~~-~~~~---~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~ 141 (319)
T 3frx_A 70 DCTLTADGA-YALSASWDKTLRLWDVAT-GETY---QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCL 141 (319)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTT-TEEE---EEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEE
T ss_pred EEEECCCCC-EEEEEeCCCEEEEEECCC-CCee---EEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeE
Confidence 999999998 999999999999999987 4444 67889999999999999998 999999999999999985 577
Q ss_pred EEeecCCCCEEEEEEcCCCC------eEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWL------AVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~------~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+|...|.++.|+|... .++.+.. ++.|++|+.+.+.
T Consensus 142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~ 187 (319)
T 3frx_A 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVKAWNLNQFQ 187 (319)
T ss_dssp EEECCCSSCEEEEEECCC------CCEEEEEET----TSCEEEEETTTTE
T ss_pred EEEeccCCcEEEEEEccCCCCCCCccEEEEEeC----CCEEEEEECCcch
Confidence 78889999999999999643 5666654 8999999987654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=201.80 Aligned_cols=202 Identities=13% Similarity=0.201 Sum_probs=160.7
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
..++.|.|+. .+|++|. .++.|.||++.
T Consensus 126 v~~v~~s~dg-----------~~l~s~~-----~d~~i~iwd~~------------------------------------ 153 (393)
T 1erj_A 126 IRSVCFSPDG-----------KFLATGA-----EDRLIRIWDIE------------------------------------ 153 (393)
T ss_dssp EEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT------------------------------------
T ss_pred EEEEEECCCC-----------CEEEEEc-----CCCeEEEEECC------------------------------------
Confidence 4577777774 4677776 46789999872
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (359)
.......+.+|.+.|++++|+|++ .++++++.||+|++||+.. ......+. +
T Consensus 154 -----~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~---------------------~~~~~~~~-~ 205 (393)
T 1erj_A 154 -----NRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRT---------------------GQCSLTLS-I 205 (393)
T ss_dssp -----TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEE-C
T ss_pred -----CCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCC---------------------CeeEEEEE-c
Confidence 334556778999999999999999 7899999999999999987 34444554 4
Q ss_pred CCceEEEEeCC-CCCCeEEEEcCCCcEEEEecCCCCcceec----CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 229 KDEGYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVD----PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 229 ~~~v~~l~~sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
...+.+++|+| ++. +|++|+.||.|++||+++ +..... .....+|...|.+++|+|++. +|++|+.|++|+|
T Consensus 206 ~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~ 282 (393)
T 1erj_A 206 EDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKL 282 (393)
T ss_dssp SSCEEEEEECSTTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred CCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEE
Confidence 56799999999 666 999999999999999987 333210 012267999999999999998 9999999999999
Q ss_pred EECCCCC-----------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 304 WDTRVGK-----------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 304 wD~r~~~-----------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
||++... .+...+.+|...|.+++|+|++.+|+.+.. |+.|++||..++.
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~----D~~v~iwd~~~~~ 343 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----DRGVLFWDKKSGN 343 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----TSEEEEEETTTCC
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCCe
Confidence 9998641 234566889999999999999999988776 8999999988765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=204.86 Aligned_cols=227 Identities=17% Similarity=0.216 Sum_probs=172.4
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
...-+...+.|.|+. ..+|++|+ .++.|.||++........
T Consensus 126 ~h~~~v~~l~~~p~~----------~~~lat~~-----~dg~V~vwd~~~~~~~~~------------------------ 166 (430)
T 2xyi_A 126 NHEGEVNRARYMPQN----------ACVIATKT-----PSSDVLVFDYTKHPSKPE------------------------ 166 (430)
T ss_dssp EESSCCSEEEEETTE----------EEEEEEEC-----SSSCEEEEEGGGSCSSCC------------------------
T ss_pred cCCCcEEEEEECCCC----------CcEEEEEC-----CCCcEEEEECCCcccccC------------------------
Confidence 334566677788752 25677776 356899999853110000
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.. ........+.+|.+.|++++|+|.+..+|++++.||.|++|++........ ...+..
T Consensus 167 ----~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------~~~~~~ 225 (430)
T 2xyi_A 167 ----PS---GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------------VIDAKN 225 (430)
T ss_dssp ----TT---CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------EEECSE
T ss_pred ----cc---ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------eeccce
Confidence 00 012223566699999999999999955999999999999999987211000 023456
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+.+|...|.+++|+|.+..+|++|+.||.|++||++.... ......+..|...|++++|+|++..+|++|+.||.|+|
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~v 304 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 78899999999999996655999999999999999987431 11125567899999999999999889999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCe-EEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLA-VCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~-l~~~~~~~~~d~~i~iwd~~~ 355 (359)
||++....++..+..|...|++++|+|++.. ++.+.. ++.|++|+.+.
T Consensus 305 wd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~i~iwd~~~ 353 (430)
T 2xyi_A 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRRLHVWDLSK 353 (430)
T ss_dssp EETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSCCEEEEGGG
T ss_pred EeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCcEEEEeCCC
Confidence 9999865778888999999999999999975 444444 88999999876
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=196.20 Aligned_cols=171 Identities=18% Similarity=0.328 Sum_probs=142.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|++++|+|++ .+|||++.||+|+|||+... ..+++.++.+|...|++++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~-------------------~~~~~~~l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS-------------------CBCCCEEECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC-------------------CcEEEEEEccccCCeEEEEec
Confidence 3456899999999999999 89999999999999999751 135678999999999999998
Q ss_pred CC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC--CCCEEEEEeCCCcEEEEECCCCCC-ce
Q 018235 239 PI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS-AL 313 (359)
Q Consensus 239 p~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~-~~ 313 (359)
+. +. +|+||+.||+|++||++.+ .+. ....+.+|...|.+++|+|+ +. +|++|+.|+.|+|||++.... ..
T Consensus 63 ~~~~g~-~l~s~s~D~~v~iWd~~~~-~~~-~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 63 HPKFGT-ILASCSYDGKVMIWKEENG-RWS-QIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CGGGCS-EEEEEETTTEEEEEEBSSS-CBC-CCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred CCCcCC-EEEEEcCCCEEEEEEcCCC-ceE-EEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence 74 55 9999999999999999863 221 12456789999999999997 66 999999999999999987622 24
Q ss_pred EEeecCCCCEEEEEEcCC-------------CCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRC-------------WLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~-------------~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+|...|++++|+|+ +.+|+.+.. |+.|++|+.+.+.
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDA 191 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEET----TSCEEEEEEETTT
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcC----CCcEEEEEEcCCC
Confidence 567899999999999997 457777665 8999999987653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=201.52 Aligned_cols=160 Identities=16% Similarity=0.331 Sum_probs=136.5
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...|++++|+|++ .+||+++.||.|+|||+.. .+.+..+.+|...|++++|+|++.
T Consensus 121 ~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~ 178 (393)
T 1erj_A 121 SSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGD 178 (393)
T ss_dssp CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCC
Confidence 455679999999999 8999999999999999987 566788999999999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCCCceEEe-----
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSF----- 316 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~----- 316 (359)
+|++|+.|++|++||+++ +... ..+ .+...|.+++|+| ++. +|++|+.||.|+|||++++ ..+..+
T Consensus 179 -~l~s~s~d~~v~iwd~~~-~~~~---~~~-~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~ 250 (393)
T 1erj_A 179 -KLVSGSGDRTVRIWDLRT-GQCS---LTL-SIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETG-FLVERLDSENE 250 (393)
T ss_dssp -EEEEEETTSEEEEEETTT-TEEE---EEE-ECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTC-CEEEEEC----
T ss_pred -EEEEecCCCcEEEEECCC-CeeE---EEE-EcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCC-cEEEeeccccc
Confidence 999999999999999987 4433 223 3667899999999 555 9999999999999999987 555554
Q ss_pred --ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 317 --KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 317 --~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+|...|++++|+|++.+++.+.. |+.|++|+.+.+
T Consensus 251 ~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~~ 288 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQNA 288 (393)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC---
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCCC
Confidence 578999999999999999988876 899999998753
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=205.44 Aligned_cols=166 Identities=12% Similarity=0.020 Sum_probs=135.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.|.+.|++++|+|++ .++++++.+ .+.+|+.... .........+|...+.+++|+|++
T Consensus 173 ~~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTG-------------------SCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp EECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTC-------------------CEEEEECCCCTTEEEEEEEEEETT
T ss_pred eCCCCceEEEEEccCC-ceEEeccce-eEEEEEeccC-------------------cceeeeecCCCCCCEEEEEEcCCC
Confidence 4688999999999999 788998855 4566665541 011123455788899999999999
Q ss_pred CCeEEEEcCCC----cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 242 TGRLVTGDCNS----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 242 ~~~l~sgs~dg----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
. +|++++.++ .+++|++............+.+|...|++++|+|++. +||+|+.|++|+|||++++ +++..+
T Consensus 232 ~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~-~~~~~~~ 308 (365)
T 4h5i_A 232 T-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDL-SMSKIFK 308 (365)
T ss_dssp E-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTT-EEEEEET
T ss_pred C-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCC-cEEEEec
Confidence 8 999998887 6888998763332222356778999999999999999 9999999999999999997 777775
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+|...|++|+|+|+|++|+.+.. |++|+||++..
T Consensus 309 ~gH~~~V~~v~fSpdg~~laS~S~----D~tvrvw~ip~ 343 (365)
T 4h5i_A 309 QAHSFAITEVTISPDSTYVASVSA----ANTIHIIKLPL 343 (365)
T ss_dssp TSSSSCEEEEEECTTSCEEEEEET----TSEEEEEECCT
T ss_pred CcccCCEEEEEECCCCCEEEEEeC----CCeEEEEEcCC
Confidence 789999999999999999998876 99999999854
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=212.64 Aligned_cols=160 Identities=19% Similarity=0.327 Sum_probs=143.3
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|.+.|++++|+|++ .++++++.|+.|++||+.. +.+..+.+|...+.+++
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~----------------------~~~~~~~~~~~~v~~~~ 474 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG----------------------QLLQTLTGHSSSVRGVA 474 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS----------------------CEEEEEECCSSCEEEEE
T ss_pred EEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC----------------------CEEEEEcCCCCCEEEEE
Confidence 446677999999999999999 7999999999999999754 56678899999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|++. +|++|+.|++|++|+.. ++.. ..+.+|...|++|+|+|++. +||+++.||.|+|||.. + .++..+
T Consensus 475 ~spd~~-~las~~~d~~i~iw~~~--~~~~---~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~-~-~~~~~~ 545 (577)
T 2ymu_A 475 FSPDGQ-TIASASDDKTVKLWNRN--GQLL---QTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-G-QLLQTL 545 (577)
T ss_dssp ECTTSC-EEEEEETTSEEEEEETT--SCEE---EEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT-S-CEEEEE
T ss_pred EcCCCC-EEEEEeCCCEEEEEcCC--CCEE---EEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCC-C-CEEEEE
Confidence 999998 99999999999999963 4444 67889999999999999999 99999999999999964 4 678888
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.+|...|++++|+|++++|+.+.. |+.|++||
T Consensus 546 ~~h~~~v~~~~fs~dg~~l~s~~~----D~~i~~Wd 577 (577)
T 2ymu_A 546 TGHSSSVWGVAFSPDGQTIASASS----DKTVKLWN 577 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEET----TSCEEEEC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeC----CCEEEEeC
Confidence 999999999999999999988765 89999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=213.98 Aligned_cols=166 Identities=21% Similarity=0.228 Sum_probs=143.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|.+.|++++|+|+++.++++++.|++|++||... .+.+.++.+|...|++++|+|
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------------------~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------------------FKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------------------BEEEEEECCCSSCEEEEEECT
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---------------------CeEeeeeccccCceEEEEECC
Confidence 35689999999999999867899999999999999765 456778999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccc-------cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-------IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-------~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
++. +|+||+.|++|++||+.+ +... ..+ .+|...|.+++|+|++. +|++|+.|++|+|||++++ .+
T Consensus 201 dg~-~las~s~D~~i~lwd~~~-g~~~---~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~-~~ 273 (611)
T 1nr0_A 201 DGS-LFASTGGDGTIVLYNGVD-GTKT---GVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATL-KV 273 (611)
T ss_dssp TSS-EEEEEETTSCEEEEETTT-CCEE---EECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT-EE
T ss_pred CCC-EEEEEECCCcEEEEECCC-CcEe---eeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCC-ce
Confidence 998 999999999999999977 3333 223 27999999999999999 9999999999999999875 32
Q ss_pred e-------------------------------------------EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 313 L-------------------------------------------TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 313 ~-------------------------------------------~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
+ ..+.+|...|++++|+|++.+|+.+.. |+.|+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~----D~~v~ 349 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA----EGHIN 349 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC----CCcEE
Confidence 2 233579999999999999999998876 89999
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
+|+..++.
T Consensus 350 ~Wd~~~~~ 357 (611)
T 1nr0_A 350 SWDISTGI 357 (611)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99988764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-24 Score=195.55 Aligned_cols=210 Identities=14% Similarity=0.193 Sum_probs=169.3
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
+-|..++.|.|+. .+|++|+ .++.|.||++..
T Consensus 8 ~~~i~~~~~s~~~-----------~~l~~~~-----~d~~v~i~~~~~-------------------------------- 39 (372)
T 1k8k_C 8 VEPISCHAWNKDR-----------TQIAICP-----NNHEVHIYEKSG-------------------------------- 39 (372)
T ss_dssp SSCCCEEEECTTS-----------SEEEEEC-----SSSEEEEEEEET--------------------------------
T ss_pred CCCeEEEEECCCC-----------CEEEEEe-----CCCEEEEEeCCC--------------------------------
Confidence 3467788888885 4677776 367999999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
........+.+|.+.|++++|+|++ .++++++.||.|++||+... ...+...+
T Consensus 40 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~ 92 (372)
T 1k8k_C 40 -------NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TWKPTLVI 92 (372)
T ss_dssp -------TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EEEEEEEC
T ss_pred -------CcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCC-------------------eeeeeEEe
Confidence 0212446667899999999999988 89999999999999999761 01233455
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
..|...+.+++|+|++. +|++|+.||.|++||++....+........+|...|.+++|+|++. +|++++.||.|++||
T Consensus 93 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFS 170 (372)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred ecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence 77889999999999998 9999999999999999874432211233467899999999999998 999999999999999
Q ss_pred CC------------------CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TR------------------VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r------------------~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++ .+ .++..+..|...|++++|+|++.+++++.. ++.|++|+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKM 235 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEEGGGTT
T ss_pred cccccccccccccccccccchh-hheEecCCCCCeEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc
Confidence 75 33 566777889999999999999999988876 8999999998765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=202.35 Aligned_cols=176 Identities=16% Similarity=0.286 Sum_probs=147.0
Q ss_pred EEecCCCceeeEEEeC-CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 160 RKVAHQGCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.+.+|.+.|++++|+| ++ .+||+++.||.|+||++....... ....++..+.+|...|.+++|+
T Consensus 76 ~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~ 140 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVL--------------PLREPVITLEGHTKRVGIVAWH 140 (402)
T ss_dssp CBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSS--------------CBCSCSEEEECCSSCEEEEEEC
T ss_pred eEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCcc--------------ccCCceEEecCCCCeEEEEEEC
Confidence 3458999999999999 55 899999999999999998721000 0126788999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|++..+|++|+.||.|++||+++ +... ..+ .+|...|.+++|+|++. +|++++.||.|+|||++++ ..+..+
T Consensus 141 p~~~~~l~s~~~dg~i~iwd~~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~ 214 (402)
T 2aq5_A 141 PTAQNVLLSAGCDNVILVWDVGT-GAAV---LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKG-TVVAEK 214 (402)
T ss_dssp SSBTTEEEEEETTSCEEEEETTT-TEEE---EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred cCCCCEEEEEcCCCEEEEEECCC-CCcc---EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCC-ceeeee
Confidence 99855999999999999999987 4444 456 78999999999999998 9999999999999999997 677777
Q ss_pred -ecCCCC-EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 -KAHNAD-VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 -~~h~~~-V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|... +.++.|+|++.+++.+.. ...++.|++||.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred ccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 688776 899999999998888731 1238999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-24 Score=197.11 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=169.3
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|++|+ .++.|.||++..
T Consensus 11 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~iw~~~~-------------------------------- 42 (379)
T 3jrp_A 11 NELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG-------------------------------- 42 (379)
T ss_dssp CCCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cccEEEEEEcCCC-----------CEEEEEE-----CCCcEEEEecCC--------------------------------
Confidence 3466788888875 4777787 467899999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
........+.+|.+.|++++|++. + .+|++++.||.|++||+... ....+.
T Consensus 43 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~-------------------~~~~~~ 95 (379)
T 3jrp_A 43 -------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIA 95 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETT-------------------EEEEEE
T ss_pred -------CcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCC-------------------ceeEee
Confidence 133455677789999999999876 5 89999999999999999871 112667
Q ss_pred EecCCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC-------------C
Q 018235 224 KFGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-------------E 288 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-------------~ 288 (359)
.+.+|...+.+++|+|+ +. +|++|+.||.|++||++...... ...+.+|...|.+++|+|. +
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 88889999999999999 76 99999999999999998743322 2456789999999999994 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCCC---ceEEeecCCCCEEEEEEcCC---CCeEEEEeeecccceEEEEEeCcCC
Q 018235 289 PDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRC---WLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~s~~---~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
. +|++|+.||.|+|||++.... .+..+.+|...|++++|+|+ +.+++.+.. ++.|++|+...+
T Consensus 173 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----dg~i~iwd~~~~ 241 (379)
T 3jrp_A 173 R-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ----DRTCIIWTQDNE 241 (379)
T ss_dssp C-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET----TSCEEEEEESST
T ss_pred C-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC----CCEEEEEeCCCC
Confidence 6 999999999999999997632 33456789999999999999 788887766 889999998876
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=192.92 Aligned_cols=199 Identities=16% Similarity=0.208 Sum_probs=157.3
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+. .+++.|. .++.|.||++.
T Consensus 77 ~~V~~~~~~~~~-----------~~l~s~s-----~D~~v~lwd~~---------------------------------- 106 (343)
T 2xzm_R 77 HFVSDLALSQEN-----------CFAISSS-----WDKTLRLWDLR---------------------------------- 106 (343)
T ss_dssp SCEEEEEECSST-----------TEEEEEE-----TTSEEEEEETT----------------------------------
T ss_pred CceEEEEECCCC-----------CEEEEEc-----CCCcEEEEECC----------------------------------
Confidence 456677887774 3677776 47799999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE--
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-- 224 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (359)
.......+.+|.+.|++++|+|++ .+|++++.||+|++||+... ....
T Consensus 107 -------~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~----------------------~~~~~~ 156 (343)
T 2xzm_R 107 -------TGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGE----------------------CKFSSA 156 (343)
T ss_dssp -------SSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSC----------------------EEEECC
T ss_pred -------CCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCC----------------------ceeeee
Confidence 333456777999999999999999 78999999999999998741 1112
Q ss_pred -ecCCCCceEEEEeCCCCC---------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 225 -FGGHKDEGYAIDWNPITT---------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 225 -~~~h~~~v~~l~~sp~~~---------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
..+|...+.+++|+|.+. .+|++|+.||+|++||.+ .... ..+.+|...|.+++|+|++. +|++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~---~~~~~h~~~v~~~~~s~~g~-~l~s 230 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIR---YTFKAHESNVNHLSISPNGK-YIAT 230 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEE---EEEECCSSCEEEEEECTTSS-EEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Ccee---EEEcCccccceEEEECCCCC-EEEE
Confidence 237888999999999872 289999999999999953 2332 56789999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.||.|+|||++....+...+ .+...|++++|+|++.+++.+. ++.+++|+..++.
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~-----d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGT-----DQGVKIFNLMTQS 287 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEE-----SSCEEEEESSSCC
T ss_pred EcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEEC-----CCCEEEEEeCCCC
Confidence 9999999999996553444444 3556799999999998876553 5669999987654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=211.51 Aligned_cols=165 Identities=10% Similarity=0.125 Sum_probs=140.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE--Ee
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI--DW 237 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~ 237 (359)
.+.+|.+.|++++|++.+ .||+|+.||+|++||+.. ...+...+.+|...|.+| .|
T Consensus 261 ~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~--------------------~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTD--------------------PEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp EECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTB--------------------CSSCSEEEECSSSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCC--------------------CCCceEEeecccccEEEEEEEc
Confidence 456899999999999854 799999999999999986 235667889999999999 57
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|++..+||||+.|++|+|||+++ .+.. ..+.+|.. .|.+|+|+|++. .|++++.|++|+|||++.+ .++..
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~-~~~~---~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~-~~~~~ 392 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKD-IATT---KTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA-FAVHP 392 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGG-HHHH---CEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT-TCCEE
T ss_pred CCCCCeEEEEeccCCeEEEEECCC-CCcc---cccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc-cccee
Confidence 888723999999999999999987 3333 34556653 588999999998 8999999999999999997 66778
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|...|++|+|+|++++|+.+.. |+.|++|+...+
T Consensus 393 l~gH~~~V~sva~Sp~g~~l~Sgs~----Dgtv~lwd~~~~ 429 (524)
T 2j04_B 393 LVSRETTITAIGVSRLHPMVLAGSA----DGSLIITNAARR 429 (524)
T ss_dssp EEECSSCEEEEECCSSCCBCEEEET----TTEEECCBSCSS
T ss_pred eecCCCceEEEEeCCCCCeEEEEEC----CCEEEEEechHh
Confidence 8899999999999999999988776 999999997653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=201.89 Aligned_cols=226 Identities=12% Similarity=0.220 Sum_probs=173.0
Q ss_pred hhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCC
Q 018235 59 SLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESS 138 (359)
Q Consensus 59 ~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~ 138 (359)
.+..+...-+..++.|.|+. .+|++|+ .++.|.||++....
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~-----------~~l~~~~-----~dg~v~vw~~~~~~----------------------- 100 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNN-----------KIIAGAL-----DNGSLELYSTNEAN----------------------- 100 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSS-----------SCEEEEE-----SSSCEEEECCSSTT-----------------------
T ss_pred EEEEEecCCceEEEEECCCC-----------CeEEEEc-----cCCeEEEeeccccc-----------------------
Confidence 34444556678899998875 4677777 36689999873100
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCC
Q 018235 139 DSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSN 218 (359)
Q Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 218 (359)
........+.+|.+.|++++|+|++..++++++.||.|++||+.......... .
T Consensus 101 --------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~ 154 (416)
T 2pm9_A 101 --------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------T 154 (416)
T ss_dssp --------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC------------C
T ss_pred --------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc------------c
Confidence 02234567778999999999999844899999999999999998731000000 0
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC------CCCeEEEEecCCCCCEE
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH------SASVEDLQWSPTEPDVF 292 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h------~~~V~~v~~sp~~~~~l 292 (359)
......+.+|...+.+++|+|++..+|++|+.||.|++||++. +... ..+..| ...|.+++|+|++..+|
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEV---IHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEE---EEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcc---eEEeccccccccCCceEEEEECCCCCCEE
Confidence 0111234678899999999999544999999999999999987 4433 334333 78999999999987699
Q ss_pred EEEeCCC---cEEEEECCCCCCceEEee-cCCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 293 ASCSVDG---HIAIWDTRVGKSALTSFK-AHNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 293 as~s~Dg---~I~iwD~r~~~~~~~~~~-~h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++++.|+ .|++||+++...++..+. +|...|++++|+| ++.+++.+.. ++.|++|+..+++
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAE 296 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCC
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCc
Confidence 9999999 999999998645667777 8999999999999 8888888876 8999999988765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=197.54 Aligned_cols=169 Identities=13% Similarity=0.167 Sum_probs=140.7
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+.+..+.+|...|+++
T Consensus 130 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 130 LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD---------------------GSNPRTLIGHRATVTDI 187 (420)
T ss_dssp EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCCCEEEECCSSCEEEE
T ss_pred ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC---------------------CcCceEEcCCCCcEEEE
Confidence 3434456899999999999998 7999999999999999987 56778899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc---CCC---------------------CCeEEEEecCCCCCE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI---GHS---------------------ASVEDLQWSPTEPDV 291 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~---~h~---------------------~~V~~v~~sp~~~~~ 291 (359)
+|+|++. +|++|+.||+|++||+++ ++.. ..+. .|. ..+.+++|+|++. +
T Consensus 188 ~~~~~~~-~l~s~~~d~~v~iwd~~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 261 (420)
T 3vl1_A 188 AIIDRGR-NVLSASLDGTIRLWECGT-GTTI---HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-Y 261 (420)
T ss_dssp EEETTTT-EEEEEETTSCEEEEETTT-TEEE---EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-E
T ss_pred EEcCCCC-EEEEEcCCCcEEEeECCC-Ccee---EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-E
Confidence 9999998 999999999999999987 4433 2232 233 4444555678888 9
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCc
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++|+.||.|+|||++++ ..+..+ ..|...|++++|+|++. +++.+.. ++.|++|+.+++.
T Consensus 262 l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE----NGMLAQWDLRSPE 324 (420)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTT
T ss_pred EEEEcCCCeEEEEECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeC----CCeEEEEEcCCCc
Confidence 999999999999999997 555555 56889999999999999 7777765 8999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=196.14 Aligned_cols=205 Identities=15% Similarity=0.093 Sum_probs=163.6
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+.. .+|++|+ .++.|.||++..
T Consensus 74 ~~v~~~~~~~~~~----------~~l~s~~-----~dg~i~iwd~~~--------------------------------- 105 (383)
T 3ei3_B 74 RRVTSLEWHPTHP----------TTVAVGS-----KGGDIILWDYDV--------------------------------- 105 (383)
T ss_dssp SCEEEEEECSSCT----------TEEEEEE-----BTSCEEEEETTS---------------------------------
T ss_pred CCEEEEEECCCCC----------CEEEEEc-----CCCeEEEEeCCC---------------------------------
Confidence 4556777877631 3777777 366899998731
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..........+|.+.|++++|+|.+..++++++.||.|++||+.. ..+..+.
T Consensus 106 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~ 157 (383)
T 3ei3_B 106 ------QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----------------------SVIQVFA 157 (383)
T ss_dssp ------TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS----------------------CEEEEEE
T ss_pred ------cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC----------------------CceEEEe
Confidence 133333444579999999999995448999999999999999985 2233443
Q ss_pred C---CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 227 G---HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 227 ~---h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
. |...+.+++|+|++. +|++|+.||.|++||++ +... ..+.+|...|.+++|+|++..+|++|+.|+.|+|
T Consensus 158 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 158 KTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD--GHEI---FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231 (383)
T ss_dssp CCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT--SCEE---EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC--CCEE---EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence 3 447899999999998 99999999999999994 3333 5678899999999999999889999999999999
Q ss_pred EECCCCC---CceEEeecCCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 304 WDTRVGK---SALTSFKAHNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 304 wD~r~~~---~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
||+++.. ..+..+ .|...|++++|+| ++.+++++.. ++.|++|+.+++..
T Consensus 232 wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYDWSK 285 (383)
T ss_dssp EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTBTTS
T ss_pred EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCCCcc
Confidence 9999841 334444 7999999999999 9999988876 89999999987653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=196.30 Aligned_cols=175 Identities=21% Similarity=0.341 Sum_probs=139.6
Q ss_pred EEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
....+.+|.+.|++++|+|+. ..+||+++.||.|++||+.... .......+.+|...+.++
T Consensus 95 ~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~------------------~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 95 KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG------------------QWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS------------------CEEECCBTTSSSSCBCCC
T ss_pred EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC------------------CcceeeeeccccCCcceE
Confidence 335667899999999999983 2789999999999999997621 011234567899999999
Q ss_pred EeCCCC----------------CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC---CCEEEEEe
Q 018235 236 DWNPIT----------------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCS 296 (359)
Q Consensus 236 ~~sp~~----------------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s 296 (359)
+|+|.. ..+|++|+.|++|++||++....+. ....+.+|...|.+++|+|++ ..+||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~-~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE-EEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc-eeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 999973 1289999999999999997533221 125688999999999999986 23999999
Q ss_pred CCCcEEEEECCCCC---CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 297 VDGHIAIWDTRVGK---SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 297 ~Dg~I~iwD~r~~~---~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.||+|+|||++... .....+..|...|++++|+|++.+|+.+.. |+.|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~----D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG----DNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES----SSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC----CCeEEEEEEC
Confidence 99999999998631 123345678999999999999999998876 8999999965
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=193.98 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=167.2
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+.. ..+|++|+ .++.|.||++..
T Consensus 55 ~~~v~~~~~~~~~~---------~~~l~s~~-----~dg~v~iwd~~~-------------------------------- 88 (379)
T 3jrp_A 55 EGPVWRVDWAHPKF---------GTILASCS-----YDGKVLIWKEEN-------------------------------- 88 (379)
T ss_dssp SSCEEEEEECCGGG---------CSEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred CCcEEEEEeCCCCC---------CCEEEEec-----cCCEEEEEEcCC--------------------------------
Confidence 45677888877621 14777777 467899999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
...........|.+.|++++|+|+ + .++++++.||.|++||+... ......
T Consensus 89 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~-------------------~~~~~~ 141 (379)
T 3jrp_A 89 -------GRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKEN-------------------GTTSPI 141 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTT-------------------SCCCEE
T ss_pred -------CceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCC-------------------CceeeE
Confidence 022244666789999999999998 6 79999999999999999872 124456
Q ss_pred EecCCCCceEEEEeCC-------------CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---
Q 018235 224 KFGGHKDEGYAIDWNP-------------ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--- 287 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp-------------~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--- 287 (359)
.+.+|...+.+++|+| ++. +|++|+.||.|++||++...........+.+|...|.+++|+|+
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 7789999999999999 466 99999999999999998744322223567889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCce-EE-e--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKSAL-TS-F--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~-~~-~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+. +|++++.||.|+|||++.+.... .. + ..|...|++++|+|++.+|+.+.. ++.|++|+...
T Consensus 221 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~iw~~~~ 287 (379)
T 3jrp_A 221 RS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKENL 287 (379)
T ss_dssp SE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES----SSSEEEEEEEE
T ss_pred CC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC----CCcEEEEeCCC
Confidence 66 99999999999999999863221 12 2 348889999999999999998876 88899999773
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=193.57 Aligned_cols=162 Identities=17% Similarity=0.271 Sum_probs=142.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC---C---CCceEEE
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG---H---KDEGYAI 235 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~l 235 (359)
..|...|++++|+|++ ++++++.+|.|++||+.. ..++..+.. | ...+.++
T Consensus 183 ~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~---------------------~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 183 MTPSQFATSVDISERG--LIATGFNNGTVQISELST---------------------LRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp SSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT---------------------TEEEEEEECCC---CCCCCEEEE
T ss_pred cCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC---------------------CceeEEEeccccccccCCccceE
Confidence 4589999999999988 899999999999999987 567778888 8 8999999
Q ss_pred EeCCCCCCeEEEEcCC---CcEEEEecCCCCcceecCccccC-------------CCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 236 DWNPITTGRLVTGDCN---SCIYLWEPASDATWNVDPNPFIG-------------HSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~-------------h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
+|+|++. +|++|+.| |.|++||+++ +... ..+.+ |...|.+++|+|++. +|++++.||
T Consensus 240 ~~~~~~~-~l~~~~~d~~~g~i~i~d~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 313 (397)
T 1sq9_A 240 KFSPQGS-LLAIAHDSNSFGCITLYETEF-GERI---GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDG 313 (397)
T ss_dssp EECSSTT-EEEEEEEETTEEEEEEEETTT-CCEE---EEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EECCCCC-EEEEEecCCCCceEEEEECCC-Cccc---ceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCC
Confidence 9999998 99999999 9999999987 4443 45666 999999999999998 999999999
Q ss_pred cEEEEECCCCCCceEEee------cC---------------CCCEEEEEEcCCC----------CeEEEEeeecccceEE
Q 018235 300 HIAIWDTRVGKSALTSFK------AH---------------NADVNVISWNRCW----------LAVCWHLEVMMEHFLF 348 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~------~h---------------~~~V~~i~~s~~~----------~~l~~~~~~~~~d~~i 348 (359)
.|+|||++++ .++..+. .| ...|++++|+|++ .+|+.+.. ++.|
T Consensus 314 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~----dg~i 388 (397)
T 1sq9_A 314 KLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL----DRSI 388 (397)
T ss_dssp EEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET----TTEE
T ss_pred eEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC----CCcE
Confidence 9999999997 7788888 78 9999999999998 67777766 8999
Q ss_pred EEEeCcCCc
Q 018235 349 MILDCSRGE 357 (359)
Q Consensus 349 ~iwd~~~g~ 357 (359)
++|+..+|.
T Consensus 389 ~iw~~~~g~ 397 (397)
T 1sq9_A 389 RWFREAGGK 397 (397)
T ss_dssp EEEEEEC--
T ss_pred EEEEcCCCC
Confidence 999998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=199.69 Aligned_cols=168 Identities=15% Similarity=0.269 Sum_probs=144.8
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC------CCceE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH------KDEGY 233 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~ 233 (359)
....|.+.|++++|+|++..++++++.+|.|++||+.. ..++..+..| ...+.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------------------~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---------------------KKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---------------------TEEEEEECCCCCSSCCCCCEE
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---------------------CCcceEEeccccccccCCceE
Confidence 34579999999999999558999999999999999987 4455566555 78999
Q ss_pred EEEeCCCCCCeEEEEcCCC---cEEEEecCCCCcceecCcccc-CCCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCC
Q 018235 234 AIDWNPITTGRLVTGDCNS---CIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg---~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~ 308 (359)
+++|+|++..+|++|+.|+ .|++||++...... ..+. +|...|.+++|+| ++. +|++++.||.|+|||+++
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSS
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC
Confidence 9999999865999999999 99999998743433 5677 8999999999999 666 999999999999999999
Q ss_pred CCCceEEeecCCCCEEEEEEcCCC-CeEEEEeeecccceEEEEEeCcCCc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCW-LAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~-~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ .++..+..|...|++++|+|++ .+++.+.. ++.|++|+...+.
T Consensus 295 ~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~----d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 295 A-EQLSQFPARGNWCFKTKFAPEAPDLFACASF----DNKIEVQTLQNLT 339 (416)
T ss_dssp C-CEEEEEECSSSCCCCEEECTTCTTEEEECCS----SSEEEEEESCCCC
T ss_pred C-ccceeecCCCCceEEEEECCCCCCEEEEEec----CCcEEEEEccCCC
Confidence 7 7888899999999999999999 67776655 8999999988754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=197.20 Aligned_cols=212 Identities=13% Similarity=0.133 Sum_probs=168.4
Q ss_pred cCcceeEEEEe-ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 66 ~wP~ls~~~~p-d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.-+..++.|.| +. .+|++|+ .++.|.||++..-....
T Consensus 81 ~~~V~~~~~~p~~~-----------~~l~s~s-----~dg~v~vw~~~~~~~~~-------------------------- 118 (402)
T 2aq5_A 81 TAPVLDIAWCPHND-----------NVIASGS-----EDCTVMVWEIPDGGLVL-------------------------- 118 (402)
T ss_dssp SSCEEEEEECTTCT-----------TEEEEEE-----TTSEEEEEECCTTCCSS--------------------------
T ss_pred CCCEEEEEeCCCCC-----------CEEEEEe-----CCCeEEEEEccCCCCcc--------------------------
Confidence 55788999998 43 3777776 46789999984110000
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
........+.+|.+.|++++|+|++.+++++++.||.|+|||+.. ..++..
T Consensus 119 --------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~ 169 (402)
T 2aq5_A 119 --------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT---------------------GAAVLT 169 (402)
T ss_dssp --------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT---------------------TEEEEE
T ss_pred --------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC---------------------CCccEE
Confidence 001122456689999999999999877999999999999999987 566777
Q ss_pred e--cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc-cCCCCC-eEEEEecCCCCCEEEEE---eC
Q 018235 225 F--GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSAS-VEDLQWSPTEPDVFASC---SV 297 (359)
Q Consensus 225 ~--~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~-V~~v~~sp~~~~~las~---s~ 297 (359)
+ .+|...+.+++|+|++. +|++|+.||.|++||+++ +... ..+ .+|... +.++.|+|++. +|++| +.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~ 243 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRK-GTVV---AEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMS 243 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTT-TEEE---EEEECSSCSSSCCEEEECSTTE-EEEEEECTTC
T ss_pred EecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCC-Ccee---eeeccCCCCCcceEEEEcCCCc-EEEEeccCCC
Confidence 8 78999999999999998 999999999999999987 4443 445 678765 89999999988 88888 79
Q ss_pred CCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 298 DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.|+|||++....++... ..|...|.+++|+|++.+++.... .++.|++|+...+.
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~---~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK---GDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET---TCSCEEEEEECSST
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc---CCCeEEEEEecCCC
Confidence 9999999999874444444 357788999999999999876543 27889999988765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-23 Score=193.51 Aligned_cols=203 Identities=17% Similarity=0.316 Sum_probs=167.0
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 134 ~~~v~~v~~s~~~-----------~~l~~~~-----~dg~i~iwd~~--------------------------------- 164 (401)
T 4aez_A 134 STYVASVKWSHDG-----------SFLSVGL-----GNGLVDIYDVE--------------------------------- 164 (401)
T ss_dssp TCCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEC-----CCCeEEEEECc---------------------------------
Confidence 4566777777764 4777777 35689999872
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+.+|.+.|.++.|.+ .++++++.+|.|++||+.. ....+..+
T Consensus 165 --------~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~--------------------~~~~~~~~ 213 (401)
T 4aez_A 165 --------SQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI--------------------ANHQIGTL 213 (401)
T ss_dssp --------TCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS--------------------SSCEEEEE
T ss_pred --------CCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEeccc--------------------CcceeeEE
Confidence 2334456679999999999954 6899999999999999985 25667889
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAI 303 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~i 303 (359)
.+|...+.+++|+|++. +|++|+.||.|++||++. +... ..+.+|...|.+++|+|++..++++|+ .|+.|++
T Consensus 214 ~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~-~~~~---~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARS-SIPK---FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTC-SSEE---EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred cCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCC-CCcc---EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 99999999999999988 999999999999999987 4443 467789999999999999887999987 8999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
||++++ .++..+. |...|++++|+|++.+++.... ..++.|++|+..++.
T Consensus 289 ~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g--~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 289 WNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHG--FPDNNLSIWSYSSSG 338 (401)
T ss_dssp EETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEEC--TTTCEEEEEEEETTE
T ss_pred EECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEee--cCCCcEEEEecCCcc
Confidence 999987 6666665 6778999999999999988541 238899999987753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=184.58 Aligned_cols=203 Identities=16% Similarity=0.253 Sum_probs=168.9
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
..-+..++.|.|+. .++++|+ .++.|.+|++..
T Consensus 96 ~~~~v~~~~~~~~~-----------~~l~~~~-----~d~~i~~~d~~~------------------------------- 128 (337)
T 1gxr_A 96 RDNYIRSCKLLPDG-----------CTLIVGG-----EASTLSIWDLAA------------------------------- 128 (337)
T ss_dssp TTSBEEEEEECTTS-----------SEEEEEE-----SSSEEEEEECCC-------------------------------
T ss_pred CCCcEEEEEEcCCC-----------CEEEEEc-----CCCcEEEEECCC-------------------------------
Confidence 34556677888764 3677776 467899998731
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
..+.....+..|.+.|++++|+|++ .++++++.+|.|++||+.. ..++..
T Consensus 129 --------~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~---------------------~~~~~~ 178 (337)
T 1gxr_A 129 --------PTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQ 178 (337)
T ss_dssp --------C--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEE
T ss_pred --------CCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC---------------------Cceeee
Confidence 1334556777899999999999988 7899999999999999987 566788
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
+.+|...+.+++|+|++. +|++++.||.|++||++. +... .. ..|...+.+++|+|++. +|++++.++.|++|
T Consensus 179 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-~~~~---~~-~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 179 FQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQL---QQ-HDFTSQIFSLGYCPTGE-WLAVGMESSNVEVL 251 (337)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEE---EE-EECSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred eecccCceEEEEECCCCC-EEEEEecCCcEEEEECCC-CceE---ee-ecCCCceEEEEECCCCC-EEEEEcCCCcEEEE
Confidence 889999999999999998 999999999999999987 4433 22 34788999999999998 99999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++.. ....+..|...|.+++|+|++.+++.+.. ++.+++|+..++.
T Consensus 252 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 252 HVNKP--DKYQLHLHESCVLSLKFAYCGKWFVSTGK----DNLLNAWRTPYGA 298 (337)
T ss_dssp ETTSS--CEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred ECCCC--CeEEEcCCccceeEEEECCCCCEEEEecC----CCcEEEEECCCCe
Confidence 99986 34567889999999999999999988876 8999999988765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=202.43 Aligned_cols=162 Identities=19% Similarity=0.352 Sum_probs=143.9
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|.+.|++++|+|++ .+||+++.|+.|++||... +.+..+.+|...+++++
T Consensus 377 ~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~----------------------~~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 377 LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG----------------------QLLQTLTGHSSSVWGVA 433 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC----------------------CEEEEEECCSSCEEEEE
T ss_pred EEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC----------------------CEEEEecCCCCCeEEEE
Confidence 445677899999999999999 7899999999999999643 56778899999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|++. +|++++.|++|++|+.. +... ..+.+|...|.+++|+|++. +||+++.|+.|+|||.. + +++..+
T Consensus 434 ~s~d~~-~l~~~~~d~~v~~w~~~--~~~~---~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~-~-~~~~~~ 504 (577)
T 2ymu_A 434 FSPDDQ-TIASASDDKTVKLWNRN--GQLL---QTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN-G-QLLQTL 504 (577)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETT--SCEE---EEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEETT-S-CEEEEE
T ss_pred ECCCCC-EEEEEcCCCEEEEEECC--CCEE---EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCC-C-CEEEEE
Confidence 999998 99999999999999974 3333 56889999999999999999 99999999999999964 3 678889
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+|...|++|+|+|++++|+.+.. |+.|++||..
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~----dg~v~lwd~~ 538 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNRN 538 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEET----TSEEEEECTT
T ss_pred eCCCCCEEEEEEcCCCCEEEEEEC----cCEEEEEeCC
Confidence 999999999999999999998876 8999999964
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=188.98 Aligned_cols=210 Identities=17% Similarity=0.212 Sum_probs=167.2
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
..-+..++.|.|+. ..+|++|+ .++.|.||++.
T Consensus 98 ~~~~v~~~~~~~~~----------~~~l~s~~-----~d~~i~iwd~~-------------------------------- 130 (408)
T 4a11_B 98 HRYSVETVQWYPHD----------TGMFTSSS-----FDKTLKVWDTN-------------------------------- 130 (408)
T ss_dssp CSSCEEEEEECTTC----------TTCEEEEE-----TTSEEEEEETT--------------------------------
T ss_pred CCCcEEEEEEccCC----------CcEEEEEe-----CCCeEEEeeCC--------------------------------
Confidence 55677888998843 13566676 46789999873
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCC--cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (359)
.... .....|...+.++.++|.++ .++++++.+|.|++||+.. ..++
T Consensus 131 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~---------------------~~~~ 179 (408)
T 4a11_B 131 ---------TLQT-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS---------------------GSCS 179 (408)
T ss_dssp ---------TTEE-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS---------------------SCCC
T ss_pred ---------CCcc-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC---------------------ccee
Confidence 2222 33445889999999999653 4899999999999999987 5677
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------------cCccccCCCCCeEEEEecCCCCC
Q 018235 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
..+.+|...+.+++|+|++..+|++|+.||.|++||++....... ....+.+|...|.+++|+|++.
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL- 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-
Confidence 889999999999999999985699999999999999987432211 1122367999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCC----------------------------------------------CceEEeecCCCCEE
Q 018235 291 VFASCSVDGHIAIWDTRVGK----------------------------------------------SALTSFKAHNADVN 324 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~----------------------------------------------~~~~~~~~h~~~V~ 324 (359)
+|++++.||.|++||++++. .++..+.+|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999999999998752 23445577999999
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+++|+|++.+|+.+.. ++.|++|+..+++
T Consensus 339 ~~~~s~~~~~l~s~~~----dg~i~iw~~~~~~ 367 (408)
T 4a11_B 339 CCVFQSNFQELYSGSR----DCNILAWVPSLYE 367 (408)
T ss_dssp EEEEETTTTEEEEEET----TSCEEEEEECC--
T ss_pred EEEEcCCCCEEEEECC----CCeEEEEeCCCCC
Confidence 9999999999998876 8999999998765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=195.89 Aligned_cols=236 Identities=12% Similarity=0.136 Sum_probs=164.2
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|-|+. .+|++|+ .++.|.||++.........
T Consensus 28 ~~~V~~v~~s~~g-----------~~la~g~-----~dg~v~iw~~~~~~~~~~~------------------------- 66 (447)
T 3dw8_B 28 ADIISTVEFNHSG-----------ELLATGD-----KGGRVVIFQQEQENKIQSH------------------------- 66 (447)
T ss_dssp GGSEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECC-----CC-------------------------
T ss_pred cCcEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEecCCCCCCcc-------------------------
Confidence 3466788999985 4788887 4679999998522110000
Q ss_pred cccCCCCCCCeEEEEEecCC------------CceeeEEEeCCCC-cEEEEEeCCCcEEEEECCCCccccccccccccCC
Q 018235 146 DDEEGGSGTPILQLRKVAHQ------------GCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQG 212 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~------------~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (359)
.. ....+...+.+|. +.|++++|+|++. .++++++.||.|++|++................+
T Consensus 67 --~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g 141 (447)
T 3dw8_B 67 --SR---GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDG 141 (447)
T ss_dssp --CC---CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC----
T ss_pred --cc---cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccc
Confidence 00 1333456777898 8899999999874 5888999999999999875221100000000000
Q ss_pred ----CCCCC--------------CCCCcEE-ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee----cC
Q 018235 213 ----APQVS--------------NQSPLVK-FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----DP 269 (359)
Q Consensus 213 ----~~~~~--------------~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~----~~ 269 (359)
..... ...+... ..+|...|.+++|+|++. +|++| .||.|++||++....... ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 219 (447)
T 3dw8_B 142 RYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKP 219 (447)
T ss_dssp ----CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCC
T ss_pred cccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeeccc
Confidence 00000 0011123 368999999999999998 99999 799999999985333221 01
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc----eEEeecCCC------------CEEEEEEcCCCC
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA----LTSFKAHNA------------DVNVISWNRCWL 333 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~----~~~~~~h~~------------~V~~i~~s~~~~ 333 (359)
..+.+|...|.+++|+|++..+|++|+.||.|+|||++++ .. +..+..|.. .|++++|+|++.
T Consensus 220 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 298 (447)
T 3dw8_B 220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR 298 (447)
T ss_dssp SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS
T ss_pred ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCC
Confidence 2467899999999999998449999999999999999987 43 577777775 899999999999
Q ss_pred eEEEEeeecccceEEEEEeCcC
Q 018235 334 AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 334 ~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|+.+. .+.|++||.+.
T Consensus 299 ~l~~~~-----~~~v~iwd~~~ 315 (447)
T 3dw8_B 299 YMMTRD-----YLSVKVWDLNM 315 (447)
T ss_dssp EEEEEE-----SSEEEEEETTC
T ss_pred EEEEee-----CCeEEEEeCCC
Confidence 988663 37899999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=187.70 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=169.7
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.=+..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 32 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~vwd~~--------------------------------- 62 (369)
T 3zwl_B 32 ERPLTQVKYNKEG-----------DLLFSCS-----KDSSASVWYSL--------------------------------- 62 (369)
T ss_dssp SSCEEEEEECTTS-----------CEEEEEE-----SSSCEEEEETT---------------------------------
T ss_pred eceEEEEEEcCCC-----------CEEEEEe-----CCCEEEEEeCC---------------------------------
Confidence 4567788898875 4777777 46689999873
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+.+..+
T Consensus 63 --------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~ 112 (369)
T 3zwl_B 63 --------NGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSN---------------------GQCVATW 112 (369)
T ss_dssp --------TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEE
T ss_pred --------CchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEe
Confidence 233446677899999999999988 7999999999999999987 5666666
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCC-----CcEEEEecCCCCcce-------ecCccccCCCC--CeEEEEecCCCCCE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCN-----SCIYLWEPASDATWN-------VDPNPFIGHSA--SVEDLQWSPTEPDV 291 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~d-----g~I~lwd~~~~~~~~-------~~~~~~~~h~~--~V~~v~~sp~~~~~ 291 (359)
. |...+.+++|+|++. +|++++.+ |.|++||+....... .....+..|.. .+.+++|+|++. +
T Consensus 113 ~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-Y 189 (369)
T ss_dssp E-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-E
T ss_pred e-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-E
Confidence 6 788999999999998 99999988 999999997642210 01234455666 999999999998 9
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++++.||.|++||+++....+..+..|...|.+++|+|++.+++.+.. ++.|++||.+++.
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCCc
Confidence 9999999999999999843677788899999999999999999988876 8899999998765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=191.12 Aligned_cols=204 Identities=19% Similarity=0.316 Sum_probs=157.3
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|++ .+|++|+ .++.|.||++.
T Consensus 148 ~~V~sv~fspdg-----------~~lasgs-----~Dg~v~iWd~~---------------------------------- 177 (420)
T 4gga_A 148 EYISSVAWIKEG-----------NYLAVGT-----SSAEVQLWDVQ---------------------------------- 177 (420)
T ss_dssp CCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT----------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEEE-----CCCeEEEEEcC----------------------------------
Confidence 456788888885 4788888 46789999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.........+|...|.++.+++ .++++|+.|+.+++||... ....+.++.
T Consensus 178 -------~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~--------------------~~~~~~~~~ 227 (420)
T 4gga_A 178 -------QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV--------------------AEHHVATLS 227 (420)
T ss_dssp -------TTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS--------------------SSCEEEEEE
T ss_pred -------CCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecc--------------------cceeeEEec
Confidence 4455677789999999998865 6899999999999999987 356678899
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe----------
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---------- 296 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---------- 296 (359)
+|...+..+.|+|.+. +|++++.|+.|++|+...+.........+..|...|.+++|+|.+..++++++
T Consensus 228 ~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred ccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 9999999999999998 99999999999999997643222112344456666666666665544444321
Q ss_pred -----------------------------------CCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 297 -----------------------------------VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 297 -----------------------------------~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
.|+.|+|||++++ .++..+.+|...|++|+|+|+|.+|+.+..
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~- 384 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAA- 384 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEec-
Confidence 4555666666655 566677889999999999999999998876
Q ss_pred cccceEEEEEeCcCC
Q 018235 342 MMEHFLFMILDCSRG 356 (359)
Q Consensus 342 ~~~d~~i~iwd~~~g 356 (359)
|+.|++|++...
T Consensus 385 ---D~tvriWdv~~~ 396 (420)
T 4gga_A 385 ---DETLRLWRCFEL 396 (420)
T ss_dssp ---TTEEEEECCSCS
T ss_pred ---CCeEEEEECCCC
Confidence 999999998653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=195.50 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=141.3
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECC--CCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLR--SHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~ 237 (359)
.+|.+.|++++|+|++..++|+++.||.|+|||+. . ...+..+. .|...+.+++|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~ 157 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS---------------------KNVLKLRKRFCFSKRPNAISI 157 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS---------------------SSCEEEEEEEECSSCEEEEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC---------------------CceeeeeecccCCCCceEEEE
Confidence 46888999999999995556999999999999998 4 45556665 56789999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+|++. +|++|+.+|.|++|++............+.+|...|.+++|+|+ +. +|++|+.|+.|+|||++++ ..+.
T Consensus 158 sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~-~~~~ 234 (450)
T 2vdu_B 158 AEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQC-FIVD 234 (450)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCT-TCEE
T ss_pred cCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCC-ceee
Confidence 99998 99999999999999997733211023467889999999999999 77 9999999999999999987 5666
Q ss_pred E-eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 S-FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~-~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
. +.+|...|++++|+ ++.+|+++.. ++.|++||..++.
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGK 273 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCc
Confidence 6 56899999999999 9999998875 8999999998876
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=192.08 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=144.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
....|.+.|++++|+|++ .+|++++.+|.|++||+.. ...+..+.+|...+.+++|++
T Consensus 129 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~~~ 186 (401)
T 4aez_A 129 AETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVES---------------------QTKLRTMAGHQARVGCLSWNR 186 (401)
T ss_dssp EECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEET
T ss_pred eecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcC---------------------CeEEEEecCCCCceEEEEECC
Confidence 334589999999999988 7999999999999999987 567788999999999999954
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
. +|++|+.||.|++||++...... ..+.+|...|.+++|+|++. +|++|+.||.|++||++++ .++..+..|
T Consensus 187 --~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~~ 258 (401)
T 4aez_A 187 --H-VLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSS-IPKFTKTNH 258 (401)
T ss_dssp --T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCS-SEEEEECCC
T ss_pred --C-EEEEEcCCCCEEEEecccCccee---eEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCC-CccEEecCC
Confidence 4 99999999999999998644444 56888999999999999988 9999999999999999987 778888899
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...|.+++|+|++..++.... +..++.|++|+..++.
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred cceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence 999999999998876655432 1238899999998775
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=192.44 Aligned_cols=209 Identities=15% Similarity=0.222 Sum_probs=166.2
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+.... ..+|++|+ .++.|.||++.
T Consensus 69 ~~~v~~~~~~~~~~~~-------~~~l~~~~-----~dg~i~v~d~~--------------------------------- 103 (366)
T 3k26_A 69 DENFYTCAWTYDSNTS-------HPLLAVAG-----SRGIIRIINPI--------------------------------- 103 (366)
T ss_dssp TCCEEEEEEEECTTTC-------CEEEEEEE-----TTCEEEEECTT---------------------------------
T ss_pred CCcEEEEEeccCCCCC-------CCEEEEec-----CCCEEEEEEch---------------------------------
Confidence 4567889999984211 25777777 46789999762
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.......+.+|.+.|++++|+|.+..+|++++.||.|++||+.. ...+..+
T Consensus 104 --------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~ 154 (366)
T 3k26_A 104 --------TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---------------------DTLVAIF 154 (366)
T ss_dssp --------TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---------------------TEEEEEE
T ss_pred --------hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---------------------CeEEEEe
Confidence 22344566689999999999993338999999999999999987 4556666
Q ss_pred ---cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-------------------------cCccccCCCC
Q 018235 226 ---GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-------------------------DPNPFIGHSA 277 (359)
Q Consensus 226 ---~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------------~~~~~~~h~~ 277 (359)
.+|...+.+++|+|++. +|++|+.||.|++||++.. .... ......+|..
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 68999999999999998 9999999999999999863 2110 0012234999
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------------ceEEeecCCCCEEEEEEcCC--CCeEEEEeeec
Q 018235 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-------------ALTSFKAHNADVNVISWNRC--WLAVCWHLEVM 342 (359)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-------------~~~~~~~h~~~V~~i~~s~~--~~~l~~~~~~~ 342 (359)
.|.+++|+ +. +|++++.|+.|++||+++... .+..+..|...|++++|+|+ +.+|+.+..
T Consensus 233 ~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-- 307 (366)
T 3k26_A 233 YVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-- 307 (366)
T ss_dssp CCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT--
T ss_pred eEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec--
Confidence 99999999 55 999999999999999987621 25667889999999999999 999988866
Q ss_pred ccceEEEEEeCcCCc
Q 018235 343 MEHFLFMILDCSRGE 357 (359)
Q Consensus 343 ~~d~~i~iwd~~~g~ 357 (359)
++.|++|+...+.
T Consensus 308 --dg~i~vwd~~~~~ 320 (366)
T 3k26_A 308 --VGKLYVWDLEVED 320 (366)
T ss_dssp --TSCEEEEECCSSS
T ss_pred --CCcEEEEECCCCC
Confidence 8899999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-23 Score=206.78 Aligned_cols=203 Identities=17% Similarity=0.257 Sum_probs=162.9
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+. .+|+.|+ .++.|.||++.
T Consensus 431 ~~v~~v~~s~~g-----------~~l~sgs-----~Dg~v~vwd~~---------------------------------- 460 (694)
T 3dm0_A 431 HFVEDVVLSSDG-----------QFALSGS-----WDGELRLWDLA---------------------------------- 460 (694)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT----------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEEe-----CCCcEEEEECC----------------------------------
Confidence 456677888874 4777777 46799999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.......+.+|.+.|++++|+|++ .+|+|++.||+|+|||+...... .......
T Consensus 461 -------~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~------------------~~~~~~~ 514 (694)
T 3dm0_A 461 -------AGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY------------------TISEGGE 514 (694)
T ss_dssp -------TTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE------------------EECSSTT
T ss_pred -------CCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce------------------eeccCCC
Confidence 445556778999999999999999 78999999999999997651100 0001124
Q ss_pred CCCCceEEEEeCCCCC-CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 227 GHKDEGYAIDWNPITT-GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~-~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
+|...|.+++|+|++. ..|++|+.|++|++||++. .... ..+.+|...|.+++|+|++. +|++|+.||+|+|||
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~---~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLR---STLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWD 589 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEE
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEE---EEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEE
Confidence 7888999999999873 3899999999999999987 4443 56889999999999999998 999999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++++ .++..+. +...|++++|+|++.+++.+. ++.|++||..++.
T Consensus 590 ~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-----~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 590 LAEG-KKLYSLE-ANSVIHALCFSPNRYWLCAAT-----EHGIKIWDLESKS 634 (694)
T ss_dssp TTTT-EEEECCB-CSSCEEEEEECSSSSEEEEEE-----TTEEEEEETTTTE
T ss_pred CCCC-ceEEEec-CCCcEEEEEEcCCCcEEEEEc-----CCCEEEEECCCCC
Confidence 9987 5555554 456799999999998887664 4569999998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=195.43 Aligned_cols=204 Identities=10% Similarity=0.111 Sum_probs=158.8
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
...-+..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 137 ~h~~~v~~~~~~~~~-----------~~l~s~s-----~d~~i~iwd~~------------------------------- 169 (420)
T 3vl1_A 137 AHVSEITKLKFFPSG-----------EALISSS-----QDMQLKIWSVK------------------------------- 169 (420)
T ss_dssp SSSSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT-------------------------------
T ss_pred cccCccEEEEECCCC-----------CEEEEEe-----CCCeEEEEeCC-------------------------------
Confidence 344567788888874 3677777 46789999873
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.......+.+|.+.|++++|+|++ .+|++++.||.|++||+... +++.
T Consensus 170 ----------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~---------------------~~~~ 217 (420)
T 3vl1_A 170 ----------DGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTG---------------------TTIH 217 (420)
T ss_dssp ----------TCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTT---------------------EEEE
T ss_pred ----------CCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCC---------------------ceeE
Confidence 111224556899999999999998 78999999999999999862 2222
Q ss_pred Eec------------------------CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCe
Q 018235 224 KFG------------------------GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279 (359)
Q Consensus 224 ~~~------------------------~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V 279 (359)
.+. .|...+.+++|+|++. +|++|+.||.|++||+++..... ....+|...|
T Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v 293 (420)
T 3vl1_A 218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTI---QLPSKFTCSC 293 (420)
T ss_dssp EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEE---EECCTTSSCE
T ss_pred EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeE---EcccccCCCc
Confidence 222 2445677778899998 99999999999999998743322 3345688999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+++|+|++..+|++|+.||.|++||++++..++..+.. |...|+++.|. ++.+++.+.. ++.|++|+...
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~----d~~v~iw~~~~ 365 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGF----DTSIKLDIISD 365 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETT----TEEEEEEEECC
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecC----CccEEEEeccC
Confidence 999999999889999999999999999997555777766 77888988665 6777777655 89999999765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=197.83 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=157.3
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|+ .++.|.||++..-
T Consensus 55 ~~~v~~~~~s~~~-----------~~l~s~s-----~d~~v~vwd~~~~------------------------------- 87 (377)
T 3dwl_C 55 DKIVTCVDWAPKS-----------NRIVTCS-----QDRNAYVYEKRPD------------------------------- 87 (377)
T ss_dssp SSCEEEEEECTTT-----------CCEEEEE-----TTSSEEEC------------------------------------
T ss_pred CceEEEEEEeCCC-----------CEEEEEe-----CCCeEEEEEcCCC-------------------------------
Confidence 4567889998884 3677777 4678999988310
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
........+.+|.+.|++++|+|++ .+|++++.||.|++||+.... .......+
T Consensus 88 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~~ 141 (377)
T 3dwl_C 88 -------GTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQEN------------------DWWVSKHL 141 (377)
T ss_dssp --------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----------------------CCCCEEE
T ss_pred -------CceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcc------------------cceeeeEe
Confidence 0112335567899999999999988 789999999999999998721 01246677
Q ss_pred cC-CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC--------------cceecCccccCCCCCeEEEEecCCCCC
Q 018235 226 GG-HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--------------TWNVDPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 226 ~~-h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
.+ |...|++++|+|++. +|++|+.||.|++||++... ........+ +|...|.+++|+|++.
T Consensus 142 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~- 218 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN- 218 (377)
T ss_dssp CSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-
T ss_pred ecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-
Confidence 77 999999999999998 99999999999999986311 001111344 8999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCc----eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 291 VFASCSVDGHIAIWDTRVGKSA----LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~----~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+|++++.||.|+|||++++ .. +..+..|...|++++|+|++.+|+.+.. ++.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAP-EQPPRALITVKLSQLPLRSLLWANESAIVAAGYN----YSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECST-TSCEEECCCEECSSSCEEEEEEEETTEEEEEESS----SSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCCC-CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC----CcEE-EEEeC
Confidence 9999999999999999987 44 6677899999999999999998887754 5655 56544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=182.92 Aligned_cols=210 Identities=14% Similarity=0.234 Sum_probs=169.4
Q ss_pred ccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (359)
Q Consensus 63 ~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 142 (359)
....-+..++.|.|+. .++++|. ++.|.||++..-.
T Consensus 48 ~~h~~~v~~~~~~~~~-----------~~l~~~~------dg~i~iw~~~~~~--------------------------- 83 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPT-----------RHVYTGG------KGCVKVWDISHPG--------------------------- 83 (337)
T ss_dssp ECCSSCCCEEEECSSS-----------SEEEEEC------BSEEEEEETTSTT---------------------------
T ss_pred ccCCCceEEEEEecCC-----------cEEEEcC------CCeEEEEECCCCC---------------------------
Confidence 3456677788888874 3666664 4689999883100
Q ss_pred CCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc
Q 018235 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (359)
Q Consensus 143 d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (359)
...+.......+|.+.|++++|+|++ .++++++.+|.|++||+... .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-------------------~~~~~ 134 (337)
T 1gxr_A 84 ---------NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP-------------------TPRIK 134 (337)
T ss_dssp ---------CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------------EEE
T ss_pred ---------ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC-------------------Cccee
Confidence 01333444455899999999999998 78999999999999999872 12245
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
..+.+|...+.+++|+|++. +|++|+.||.|++||+++ +... ..+.+|...|.+++|+|++. +|++++.||.|+
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~-~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 208 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHN-QTLV---RQFQGHTDGASCIDISNDGT-KLWTGGLDNTVR 208 (337)
T ss_dssp EEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred eecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC-Ccee---eeeecccCceEEEEECCCCC-EEEEEecCCcEE
Confidence 67888999999999999998 999999999999999987 4444 56778999999999999998 999999999999
Q ss_pred EEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 303 IWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+||++++ ..+..+ .|...+.+++|+|++.+++.+.. ++.+++|+...+.
T Consensus 209 ~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 209 SWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPD 257 (337)
T ss_dssp EEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSC
T ss_pred EEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcC----CCcEEEEECCCCC
Confidence 9999987 555444 47888999999999999998876 7889999988764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=201.48 Aligned_cols=171 Identities=12% Similarity=0.133 Sum_probs=138.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
....+|...|++|+|+|.++.+||+|+.||.|+|||+... .......+.+|...|++|+|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-------------------~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-------------------DKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-------------------SCCEEECCCSSSCCCCEEEEC
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-------------------CceeEEEccCCCCCEEEEEEe
Confidence 3456899999999999987789999999999999999762 123344567899999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|.+..+|+||+.||+|++||++. +.... ......+...+.+++|+|++. +|++|+.||.|++||++. +.+..+.+
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~~~~~~ 248 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKG-NILRV-FASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--KELWNLRM 248 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTS-CEEEE-EECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS--CBCCCSBC
T ss_pred CCCCCEEEEEeCCCEEEEeeccC-CceeE-EeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc--ceeEEEec
Confidence 96444999999999999999975 33220 112223445688999999998 999999999999999986 46677889
Q ss_pred CCCCEEEEEEcCCCCeEE-EEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVC-WHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~-~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...|++++|+|++..++ .+.. |+.|++||.+.+.
T Consensus 249 h~~~v~~v~~~p~~~~~~~s~s~----d~~v~iwd~~~~~ 284 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLATASV----DQTVKIWDLRQVR 284 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEEEET----TSBCCEEETTTCC
T ss_pred ccceEEeeeecCCCceEEEEecC----cceeeEEeccccc
Confidence 999999999999987554 4443 8899999988754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=188.96 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=141.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|++++|+|++ .+||+++.||.|+|||+..... .......+.+|...|.+++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~ 66 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS-----------------NWELSDSWRAHDSSIVAIDWA 66 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC-----------------CEEEEEEEECCSSCEEEEEEC
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC-----------------cceecceeccCCCcEEEEEEc
Confidence 3456899999999999998 7999999999999999986210 013566788999999999999
Q ss_pred CC--CCCeEEEEcCCCcEEEEecCCCCcc-----eecCccccCCCCCeEEEEecCC--CCCEEEEEeCCCcEEEEECCCC
Q 018235 239 PI--TTGRLVTGDCNSCIYLWEPASDATW-----NVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 239 p~--~~~~l~sgs~dg~I~lwd~~~~~~~-----~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~ 309 (359)
|. +. +|++|+.||.|++||++.+... ......+.+|...|.+++|+|+ +. +|++++.||.|+|||++++
T Consensus 67 ~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 67 SPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEP 144 (351)
T ss_dssp CGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSST
T ss_pred CCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCCh
Confidence 94 66 9999999999999999874210 0112567789999999999999 77 9999999999999999865
Q ss_pred CC-----------------------------------------------------------ceEEeecCCCCEEEEEEcC
Q 018235 310 KS-----------------------------------------------------------ALTSFKAHNADVNVISWNR 330 (359)
Q Consensus 310 ~~-----------------------------------------------------------~~~~~~~h~~~V~~i~~s~ 330 (359)
.. .+..+.+|...|++++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC
Confidence 21 1334467999999999999
Q ss_pred CC----CeEEEEeeecccceEEEEEeCcCC
Q 018235 331 CW----LAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 331 ~~----~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++ .+++.+.. |+.|++|+.+.+
T Consensus 225 ~~~~~~~~l~s~~~----dg~i~iwd~~~~ 250 (351)
T 3f3f_A 225 SIGRWYQLIATGCK----DGRIRIFKITEK 250 (351)
T ss_dssp CSSCSSEEEEEEET----TSCEEEEEEEEC
T ss_pred CCCCcceEEEEEcC----CCeEEEEeCCCC
Confidence 98 67777765 899999998764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=197.06 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=135.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|.+.|++++|+|++ .+|+++ .||.|+|||+........... ..+ ..+.+|...|++++|+|++
T Consensus 174 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~------------~~~-~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 174 NAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVD------------IKP-ANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEE------------CCC-SSGGGCCCCEEEEEECSSC
T ss_pred cCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeee------------ccc-ccccccCcceEEEEECCCC
Confidence 5799999999999998 788888 799999999985211100000 001 1366899999999999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC------------CeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA------------SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..+|++|+.||.|++||+++..........+.+|.. .|.+++|+|++. +|++++. +.|+|||++..
T Consensus 239 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 239 CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC
T ss_pred CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC
Confidence 339999999999999999874322111245667765 999999999998 9999999 99999999973
Q ss_pred CCceEEeecCCCC---------------EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 KSALTSFKAHNAD---------------VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 ~~~~~~~~~h~~~---------------V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..++..+..|... +..++|+|++.+|+.+.. ++.|++|+..++.
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~----dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY----NNFFRMFDRNTKR 375 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS----TTEEEEEETTTCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc----CCEEEEEEcCCCc
Confidence 3777778777532 334899999999987766 8999999998775
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=187.89 Aligned_cols=206 Identities=11% Similarity=0.045 Sum_probs=165.7
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|++|+ .++.|.||++..
T Consensus 52 ~~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~vwd~~~-------------------------------- 83 (372)
T 1k8k_C 52 NGQVTGVDWAPDS-----------NRIVTCG-----TDRNAYVWTLKG-------------------------------- 83 (372)
T ss_dssp SSCEEEEEEETTT-----------TEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred CCcccEEEEeCCC-----------CEEEEEc-----CCCeEEEEECCC--------------------------------
Confidence 4567788888874 3677776 366899999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
...........|.+.|++++|+|++ .++++++.+|.|++||+...... .......
T Consensus 84 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------------~~~~~~~ 138 (372)
T 1k8k_C 84 -------RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------------WVCKHIK 138 (372)
T ss_dssp -------TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------------EEEEEEC
T ss_pred -------CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------------eeeeeee
Confidence 0222334557899999999999998 89999999999999999872100 0012334
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCC-----------------CCcceecCccccCCCCCeEEEEecCCC
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS-----------------DATWNVDPNPFIGHSASVEDLQWSPTE 288 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~-----------------~~~~~~~~~~~~~h~~~V~~v~~sp~~ 288 (359)
.+|...+.+++|+|++. +|++|+.||.|++||++. .+... ..+.+|...|.+++|+|++
T Consensus 139 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM---FESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp TTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE---EECCCCSSCEEEEEECSSS
T ss_pred cccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhhe---EecCCCCCeEEEEEECCCC
Confidence 67889999999999998 999999999999999742 12332 4567899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
. +|++++.||.|++||++++ .++..+..|...|++++|+|++.+++.+ . ++.+++|+...
T Consensus 215 ~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~----d~~i~i~~~~~ 274 (372)
T 1k8k_C 215 S-RVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-H----DCFPVLFTYDS 274 (372)
T ss_dssp S-EEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-T----TSSCEEEEEET
T ss_pred C-EEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-e----CCeEEEEEccC
Confidence 8 9999999999999999987 7888889999999999999999988776 4 78899999876
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-23 Score=186.25 Aligned_cols=167 Identities=9% Similarity=0.016 Sum_probs=127.9
Q ss_pred CeEEEEEecCCCceeeEEEeC---CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC--
Q 018235 155 PILQLRKVAHQGCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-- 229 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-- 229 (359)
.........|...++.++|+| ++ .+||+++.|++|+|||+.+ ++.+.++.+|.
T Consensus 168 G~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~T---------------------Gk~l~tL~g~~~~ 225 (356)
T 2w18_A 168 GGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKT---------------------GQLLKKMHIDDSY 225 (356)
T ss_dssp SCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCC--
T ss_pred CceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCC---------------------CcEEEEEcCCCcc
Confidence 345566678999999999988 44 7999999999999999987 67788887654
Q ss_pred -CceEEEEeCCCCCCeE------------EEEcCCCcEEEEecCCCCcceecC-cc-ccCCCCCeEEEEecCCCCCEEEE
Q 018235 230 -DEGYAIDWNPITTGRL------------VTGDCNSCIYLWEPASDATWNVDP-NP-FIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 230 -~~v~~l~~sp~~~~~l------------~sgs~dg~I~lwd~~~~~~~~~~~-~~-~~~h~~~V~~v~~sp~~~~~las 294 (359)
..+.+++|+|++. ++ +||+.|++|++||+.+ +..+... .. -.+|...+.+..++ +. ++|+
T Consensus 226 v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lAS 300 (356)
T 2w18_A 226 QASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAA 300 (356)
T ss_dssp -CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEE
T ss_pred eeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--CC-EEEE
Confidence 3677789999887 54 6788999999999987 4432100 00 14677666655555 55 8999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCCEE-EEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNADVN-VISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~-~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
++.|++|+|||++++ +++.++.+|...+. +++|+|+|++|+.+.. |+.|+||+.
T Consensus 301 gS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~----D~TIklWd~ 355 (356)
T 2w18_A 301 ILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLAGQK----DGNIFVYHY 355 (356)
T ss_dssp EETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEEECT----TSCEEEEEE
T ss_pred EcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEEEEC----CCcEEEecC
Confidence 999999999999998 78888988887655 6899999999998876 999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=188.26 Aligned_cols=165 Identities=21% Similarity=0.347 Sum_probs=140.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+|.+.|++++|+|.+..++++++.||.|++||+.. ...+..+. +...+.++.|++.+.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---------------------LQTADVFN-FEETVYSHHMSPVST 154 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSSCS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---------------------Cccceecc-CCCceeeeEeecCCC
Confidence 59999999999996558999999999999999987 44555554 677899999998643
Q ss_pred C--eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe----
Q 018235 243 G--RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---- 316 (359)
Q Consensus 243 ~--~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---- 316 (359)
. +|++|+.+|.|++||+++ +... ..+.+|...|.+++|+|++..+|++|+.||.|++||++....++..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKS-GSCS---HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSS-SCCC---EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CCcEEEEEcCCCeEEEEeCCC-ccee---eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 2 899999999999999987 3433 56788999999999999999789999999999999999874455554
Q ss_pred -----------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 -----------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 -----------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|...|++++|+|++.+++.+.. ++.|++|+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~ 278 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT----DNRMRLWNSSNGE 278 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEecC----CCeEEEEECCCCc
Confidence 578899999999999999998876 8899999998765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=184.08 Aligned_cols=210 Identities=15% Similarity=0.213 Sum_probs=163.3
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
..-+..++.|.|+. ..++++|+... .++.|.||++..
T Consensus 17 h~~~v~~~~~~p~~----------~~l~~~~s~~~--~d~~v~iw~~~~------------------------------- 53 (357)
T 3i2n_A 17 FNYTVFDCKWVPCS----------AKFVTMGNFAR--GTGVIQLYEIQH------------------------------- 53 (357)
T ss_dssp CSSCEEEEEECTTS----------SEEEEEEC--C--CCEEEEEEEECS-------------------------------
T ss_pred CCCceEEEEEcCCC----------ceEEEecCccC--CCcEEEEEeCCC-------------------------------
Confidence 34577899999975 24566666321 367899999831
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (359)
.........+|.+.|++++|+|++ ..++++++.||.|++||+.. ...++
T Consensus 54 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------~~~~~ 104 (357)
T 3i2n_A 54 ---------GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--------------------PEMPV 104 (357)
T ss_dssp ---------SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--------------------CSSCS
T ss_pred ---------CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--------------------CCccE
Confidence 222334455899999999999983 37899999999999999987 22378
Q ss_pred EEecCCCCceEEEEe------CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC----CCeEEEE----ecCCC
Q 018235 223 VKFGGHKDEGYAIDW------NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS----ASVEDLQ----WSPTE 288 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~------sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~----~~V~~v~----~sp~~ 288 (359)
..+.+|...|.+++| +|++. +|++|+.||.|++||++...... ..+..|. ..|.+++ |+|++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS---EEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc---eeccccCCCCCCceEEEEEEeccCCCC
Confidence 899999999999955 67887 99999999999999998744333 3444443 3899998 78888
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcC---CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR---CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~---~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
. +|++++.||.|++||++++ .. .....|...|++++|+| ++.+++.+.. ++.|++|+.+++.
T Consensus 181 ~-~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 181 R-VVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSL----EGKFHVFDMRTQH 245 (357)
T ss_dssp C-EEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEES----TTEEEEEEEEEEE
T ss_pred C-EEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECC----CCeEEEEeCcCCC
Confidence 8 9999999999999999986 43 44567899999999999 8899888866 8899999987654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=191.07 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=144.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|.+.|++++|+|++ .+|++++.+|.|++||+.. ..++..+.+|...+.+++|+
T Consensus 241 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~ 298 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGN---------------------GNSQNCFYGHSQSIVSASWV 298 (425)
T ss_dssp EEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSS---------------------BSCSEEECCCSSCEEEEEEE
T ss_pred eeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCC---------------------CccceEecCCCccEEEEEEC
Confidence 3455899999999999998 7999999999999999987 56778888999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS------- 311 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~------- 311 (359)
|++ +|++++.||.|++||+++ +... ..+..|...|.+++|+|++. +|++++.||.|+|||+++. .
T Consensus 299 ~~~--~l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~-~~~~~~~~ 370 (425)
T 1r5m_A 299 GDD--KVISCSMDGSVRLWSLKQ-NTLL---ALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKL-NSKSRSLY 370 (425)
T ss_dssp TTT--EEEEEETTSEEEEEETTT-TEEE---EEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHH-HC------
T ss_pred CCC--EEEEEeCCCcEEEEECCC-CcEe---EecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCC-ccceeeee
Confidence 987 899999999999999987 4444 56778999999999999998 9999999999999999976 4
Q ss_pred -------------ceEEeecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 -------------ALTSFKAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 -------------~~~~~~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++..+..|.. .|++++|+|++.+|+.+.. ++.|++|+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~ 424 (425)
T 1r5m_A 371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS----LQEGSVVAIP 424 (425)
T ss_dssp --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES----SSCCEEEECC
T ss_pred cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec----CceEEEEeec
Confidence 6777888866 9999999999999988876 8899999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=191.68 Aligned_cols=243 Identities=14% Similarity=0.147 Sum_probs=172.0
Q ss_pred CCceeeeChhHhhhhhccc-ccCcceeEEEEe-ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFH-IGWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~-~~wP~ls~~~~p-d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~ 123 (359)
++....+|..-...+..+. ..-+..++.|.| +. .+|++|+ .++.|.||++.
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~l~s~~-----~dg~i~iwd~~----------- 146 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-----------NLLLSVS-----KDHALRLWNIQ----------- 146 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-----------TEEEEEE-----TTSCEEEEETT-----------
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-----------CEEEEEe-----CCCeEEEEEee-----------
Confidence 3444444443334444443 456778888888 43 4677777 46789999873
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEE---ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc
Q 018235 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRK---VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN 200 (359)
Q Consensus 124 ~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~ 200 (359)
.......+ .+|.+.|++++|+|++ .++++++.||.|++||+.....
T Consensus 147 ------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 195 (366)
T 3k26_A 147 ------------------------------TDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRM 195 (366)
T ss_dssp ------------------------------TTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHH
T ss_pred ------------------------------cCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCcc
Confidence 22333343 5799999999999988 7999999999999999986321
Q ss_pred c--ccc------ccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc-------
Q 018235 201 A--LAE------SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW------- 265 (359)
Q Consensus 201 ~--~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~------- 265 (359)
. +.. ........ .............+|...|.+++|+ +. +|++|+.||.|++||++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 196 MNAIKESYDYNPNKTNRPFI-SQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp HHHHHHHHTCCGGGCSSCCC-CEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred ccccceeEEecCCCCccccc-ceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccC
Confidence 1 000 00000000 0000122344566799999999998 55 9999999999999999874321
Q ss_pred ---eecCccccCCCCCeEEEEecCC--CCCEEEEEeCCCcEEEEECCCCCC---ceEEeecC--CCCEEEEEEcCCCCeE
Q 018235 266 ---NVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAH--NADVNVISWNRCWLAV 335 (359)
Q Consensus 266 ---~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h--~~~V~~i~~s~~~~~l 335 (359)
......+.+|...|.+++|+|+ +. +|++|+.||.|+|||++++.. ....+..| ...|++++|+|++.+|
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence 0112556789999999999999 88 999999999999999998721 33356666 7899999999999999
Q ss_pred EEEeeecccceEEEEEeCcC
Q 018235 336 CWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 336 ~~~~~~~~~d~~i~iwd~~~ 355 (359)
+.+.. ++.|++|+..+
T Consensus 351 ~s~~~----dg~i~iwd~~~ 366 (366)
T 3k26_A 351 IAVCD----DASIWRWDRLR 366 (366)
T ss_dssp EEEET----TSEEEEEEC--
T ss_pred EEEeC----CCEEEEEEecC
Confidence 98876 89999999753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=206.99 Aligned_cols=201 Identities=14% Similarity=0.210 Sum_probs=170.9
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
+..++.|-|+. .++++|+ .++.|.||++.
T Consensus 15 ~v~~i~~sp~~-----------~~la~~~-----~~g~v~iwd~~----------------------------------- 43 (814)
T 3mkq_A 15 RVKGIDFHPTE-----------PWVLTTL-----YSGRVEIWNYE----------------------------------- 43 (814)
T ss_dssp CEEEEEECSSS-----------SEEEEEE-----TTSEEEEEETT-----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEe-----CCCEEEEEECC-----------------------------------
Confidence 46788898985 4777777 36789999872
Q ss_pred cCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.......+.+|.+.|++++|+|++ .+||+++.+|.|++||+.. ...+..+.+
T Consensus 44 ------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~ 95 (814)
T 3mkq_A 44 ------TQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEA 95 (814)
T ss_dssp ------TTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC
T ss_pred ------CCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEec
Confidence 444556777899999999999999 7999999999999999987 577788999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeCCCcEEEEEC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~ 306 (359)
|...|.+++|+|+++ +|++|+.||.|++|++..+.... ..+.+|...|.+++|+| ++. +|++++.||.|++||+
T Consensus 96 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE---QTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSL 170 (814)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEE---EEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEET
T ss_pred CCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEE---EEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEEC
Confidence 999999999999998 99999999999999998743443 56788999999999999 566 9999999999999999
Q ss_pred CCCCCceEEeec-CCCCEEEEEEcC--CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKA-HNADVNVISWNR--CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~-h~~~V~~i~~s~--~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+ .+...+.. |...|++++|+| ++.+++.+.. ++.|++|+..++.
T Consensus 171 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 171 GQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (814)
T ss_dssp TCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTE
T ss_pred CCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc
Confidence 987 55566644 448899999999 8999888876 8899999988764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=187.68 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=150.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccc--ccccccc--------------------------
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--LAESETI-------------------------- 208 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--~~~~~~~-------------------------- 208 (359)
....+..|.+.|++++|+|++ .+|++++.+|.|++||+...... +......
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (425)
T 1r5m_A 141 LLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK 219 (425)
T ss_dssp EEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE
T ss_pred eeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE
Confidence 445667899999999999998 78999999999999999763211 0000000
Q ss_pred -ccCCCC-C-----CCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE
Q 018235 209 -VGQGAP-Q-----VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281 (359)
Q Consensus 209 -~~~~~~-~-----~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 281 (359)
.....+ . .....++..+.+|...+.+++|+|++. +|++|+.||.|++||++. +... ..+.+|...|.+
T Consensus 220 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~i~~ 294 (425)
T 1r5m_A 220 FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGN-GNSQ---NCFYGHSQSIVS 294 (425)
T ss_dssp EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSS-BSCS---EEECCCSSCEEE
T ss_pred EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCC-Cccc---eEecCCCccEEE
Confidence 000000 0 023466778889999999999999998 999999999999999987 3333 567789999999
Q ss_pred EEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++|+|++ +|++++.|+.|++||++++ ..+..+..|...|++++|+|++.+++.+.. ++.|++|+...+.
T Consensus 295 ~~~~~~~--~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 295 ASWVGDD--KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFM----DGQVNVYDLKKLN 363 (425)
T ss_dssp EEEETTT--EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEET----TSCEEEEECHHHH
T ss_pred EEECCCC--EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEEC----CCeEEEEECCCCc
Confidence 9999988 8999999999999999987 777788899999999999999999998876 8889999987643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=179.64 Aligned_cols=209 Identities=16% Similarity=0.229 Sum_probs=171.8
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
=+..++.|.|+.. .+|+.|. .++.|.||++....
T Consensus 39 ~~V~~v~~sp~~~----------~~l~S~s-----~D~~i~vWd~~~~~------------------------------- 72 (340)
T 4aow_A 39 GWVTQIATTPQFP----------DMILSAS-----RDKTIIMWKLTRDE------------------------------- 72 (340)
T ss_dssp SCEEEEEECTTCT----------TEEEEEE-----TTSCEEEEEECCSS-------------------------------
T ss_pred CCEEEEEEeCCCC----------CEEEEEc-----CCCeEEEEECCCCC-------------------------------
Confidence 4677888988731 3677776 47799999984100
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.........+.+|.+.|++++|+|++ .++++++.||.|++|+... ........
T Consensus 73 -----~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~~ 125 (340)
T 4aow_A 73 -----TNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTT---------------------GTTTRRFV 125 (340)
T ss_dssp -----SCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEE
T ss_pred -----cccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecc---------------------cceeeeec
Confidence 01334456778999999999999999 8999999999999999987 44556667
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWD 305 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD 305 (359)
.+...+..+.+++.+. +|++|+.|+.+++||+....... ..+.+|...|..++|++++. .++++++.|+.|++||
T Consensus 126 ~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 126 GHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp CCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred CCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 7788899999999998 99999999999999987633332 45678999999999998754 3789999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+++. ..+..+.+|...|++|+|+|++.+|+.+.. |+.|++||.+++.
T Consensus 202 ~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 202 LANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGK 248 (340)
T ss_dssp TTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE
T ss_pred CCCC-ceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCc
Confidence 9997 777888999999999999999999988876 8999999988764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=176.97 Aligned_cols=204 Identities=18% Similarity=0.280 Sum_probs=161.5
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+. .+|+.|+ .++.|.||++.
T Consensus 67 ~~~V~~v~~~~~~-----------~~l~sgs-----~Dg~v~iw~~~--------------------------------- 97 (318)
T 4ggc_A 67 GEYISSVAWIKEG-----------NYLAVGT-----SSAEVQLWDVQ--------------------------------- 97 (318)
T ss_dssp TCCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCeEEEEEECCCC-----------CEEEEEE-----CCCcEEEeecC---------------------------------
Confidence 3456788888875 4788887 46789999873
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.........+|...+.++.+.+ .++++++.++.+++|+... ....+..+
T Consensus 98 --------~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~--------------------~~~~~~~~ 146 (318)
T 4ggc_A 98 --------QQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV--------------------AEHHVATL 146 (318)
T ss_dssp --------TTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTS--------------------SSCEEEEE
T ss_pred --------CceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCC--------------------CceeEEEE
Confidence 4455567789999998877654 6899999999999999887 35667788
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCcc----------------------------------
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP---------------------------------- 271 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~---------------------------------- 271 (359)
.+|...+..+.|++.+. +|++|+.||+|++||++++.........
T Consensus 147 ~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 147 SGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred cCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 99999999999999998 9999999999999999763210000000
Q ss_pred ----------ccCCCCCeEEEEecCCCCCEEEEE--eCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEe
Q 018235 272 ----------FIGHSASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 272 ----------~~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
...+...+..+.|+|.+. .++++ +.|+.|+|||++++ +++..+.+|...|++|+|+|++.+|+.+.
T Consensus 226 wd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 226 WNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAA 303 (318)
T ss_dssp EETTTCCEEEEEECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred Eecccccccccccceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 112445677788888887 44443 47999999999998 78889999999999999999999999887
Q ss_pred eecccceEEEEEeCcCC
Q 018235 340 EVMMEHFLFMILDCSRG 356 (359)
Q Consensus 340 ~~~~~d~~i~iwd~~~g 356 (359)
. |+.|++|++...
T Consensus 304 ~----D~~v~iWd~~~~ 316 (318)
T 4ggc_A 304 A----DETLRLWRCFEL 316 (318)
T ss_dssp T----TTEEEEECCSCC
T ss_pred c----CCeEEEEECCCC
Confidence 6 999999998754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=183.17 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=138.3
Q ss_pred EEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
......+|...|+.++|++.+ ..++++++.|+.|++||+.. ..++..+.+|...|+++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------------~~~~~~~~~h~~~v~~~ 221 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------------CKLKTNHIGHTGYLNTV 221 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---------------------CceeeEecCCCCcEEEE
Confidence 345566899999999999876 35789999999999999987 56778899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+|++. +|++|+.||.|++||++. ...+ ..+. +...|.+++|+|++. +++++.|+.|+|||++.. ..+..
T Consensus 222 ~~s~~~~-~l~s~s~Dg~i~iwd~~~-~~~~---~~~~-~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~-~~~~~ 292 (340)
T 4aow_A 222 TVSPDGS-LCASGGKDGQAMLWDLNE-GKHL---YTLD-GGDIINALCFSPNRY--WLCAATGPSIKIWDLEGK-IIVDE 292 (340)
T ss_dssp EECTTSS-EEEEEETTCEEEEEETTT-TEEE---EEEE-CSSCEEEEEECSSSS--EEEEEETTEEEEEETTTT-EEEEE
T ss_pred EECCCCC-EEEEEeCCCeEEEEEecc-Ccee---eeec-CCceEEeeecCCCCc--eeeccCCCEEEEEECCCC-eEEEe
Confidence 9999998 999999999999999987 4433 3344 457899999999875 556777999999999976 33333
Q ss_pred e---------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 F---------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~---------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ .+|...|++++|+|++++|+.+.. |+.|++|++++|+
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----Dg~v~iW~~~tGt 339 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT----DNLVRVWQVTIGT 339 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEET----TSCEEEEEEEC--
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeCCCcC
Confidence 2 478899999999999999998876 8999999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=182.97 Aligned_cols=236 Identities=10% Similarity=0.084 Sum_probs=180.3
Q ss_pred CceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCC
Q 018235 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~ 126 (359)
+....+|-.-...+..+...-+..++.|.|+. .++++++.......+.|.++++..-.......
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~----- 159 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG-----------NYFLAILDNVMKNPGSINIYEIERDSATHELT----- 159 (369)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTS-----------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-----
T ss_pred CeEEEEECCCCcEEEEeecCCCeEEEEEccCC-----------CEEEEecCCccCCCCEEEEEEecCCccceeec-----
Confidence 33444443333445555566777888888874 46777764433345799999985321111000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCC--ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 018235 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQG--CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204 (359)
Q Consensus 127 ~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~--~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~ 204 (359)
. ...........|.+ .|.+++|+|++ .++++++.+|.|++||+..
T Consensus 160 --------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~------- 206 (369)
T 3zwl_B 160 --------------------K-----VSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSN------- 206 (369)
T ss_dssp --------------------E-----ECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTT-------
T ss_pred --------------------c-----cccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCC-------
Confidence 0 01111134456777 99999999998 7899999999999999986
Q ss_pred ccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEe
Q 018235 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW 284 (359)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~ 284 (359)
...++..+..|...+.+++|+|++. +|++++.||.|++||+++ +... ..+. +...+..++|
T Consensus 207 -------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~---~~~~-~~~~~~~~~~ 267 (369)
T 3zwl_B 207 -------------NYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVST-LQVL---KKYE-TDCPLNTAVI 267 (369)
T ss_dssp -------------TTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-CCEE---EEEE-CSSCEEEEEE
T ss_pred -------------CcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCC-Ccee---eeec-CCCCceeEEe
Confidence 2466778889999999999999998 999999999999999987 4433 3333 7889999999
Q ss_pred cCCCCCEEEEEeCCC--------------cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEE
Q 018235 285 SPTEPDVFASCSVDG--------------HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMI 350 (359)
Q Consensus 285 sp~~~~~las~s~Dg--------------~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~i 350 (359)
+|++. ++++++.++ .|++||++++ .++..+.+|...|++++|+|++.+|+.+.. ++.|++
T Consensus 268 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----dg~v~i 341 (369)
T 3zwl_B 268 TPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGE----DGFIRL 341 (369)
T ss_dssp CSSSS-EEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred cCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcC----CCeEEE
Confidence 99999 888888888 8999999998 788888999999999999999999998876 899999
Q ss_pred EeCcCC
Q 018235 351 LDCSRG 356 (359)
Q Consensus 351 wd~~~g 356 (359)
|+...+
T Consensus 342 w~~~~~ 347 (369)
T 3zwl_B 342 HHFEKS 347 (369)
T ss_dssp EEECHH
T ss_pred EECccc
Confidence 998754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=206.41 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=169.3
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
=|..++.|-|+. .++++|+ .++.|.||++..
T Consensus 10 ~~V~~l~~s~dg-----------~~latg~-----~dg~I~vwd~~~--------------------------------- 40 (753)
T 3jro_A 10 ELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG--------------------------------- 40 (753)
T ss_dssp CCEEEECCCSSS-----------CCEEEEE-----TTTEEEEEEEET---------------------------------
T ss_pred ceeEEEEECCCC-----------CeEEEEE-----CCCcEEEEecCC---------------------------------
Confidence 366777787874 4677776 467999999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
........+.+|.+.|++++|+|. + .++++++.||.|++||+... ....+..
T Consensus 41 ------~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~-------------------~~~~~~~ 94 (753)
T 3jro_A 41 ------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIAV 94 (753)
T ss_dssp ------TEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETT-------------------EEEEEEE
T ss_pred ------CCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCC-------------------ccccccc
Confidence 133455677799999999999987 5 89999999999999998861 1125678
Q ss_pred ecCCCCceEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC-------------CC
Q 018235 225 FGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-------------EP 289 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-------------~~ 289 (359)
+.+|...|++++|+|+ +. +|++|+.||.|++||++...... ...+.+|...|.+++|+|. +.
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGC
T ss_pred ccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCC
Confidence 8899999999999999 76 99999999999999998743322 2456789999999999995 55
Q ss_pred CEEEEEeCCCcEEEEECCCCC---CceEEeecCCCCEEEEEEcCC---CCeEEEEeeecccceEEEEEeCcCC
Q 018235 290 DVFASCSVDGHIAIWDTRVGK---SALTSFKAHNADVNVISWNRC---WLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~---~~~~~~~~h~~~V~~i~~s~~---~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+|++|+.||.|++||++.+. .+...+.+|...|++++|+|+ +.+++.+.. ++.|++|+..++
T Consensus 172 -~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~----Dg~I~iwd~~~~ 239 (753)
T 3jro_A 172 -KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ----DRTCIIWTQDNE 239 (753)
T ss_dssp -CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES----SSCEEEEEESSS
T ss_pred -EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec----CCEEEEecCCCC
Confidence 99999999999999999863 234556889999999999999 888888776 899999998876
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=186.28 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=143.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~ 231 (359)
...+...+.+|.+.|++++|+|+++.++|+++.||.|+|||+.. ......+ .+|...
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~h~~~ 120 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV---------------------QNKTSFIQGMGPGDA 120 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS---------------------TTCEEEECCCSTTCB
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC---------------------cccceeeecCCcCCc
Confidence 44556778899999999999999877999999999999999987 3444444 379999
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
|.+++|+|.+..+|++|+.|+.|++||++. .. ........+|...|.+++|+|++. +|++|+.|+.|++||++. .
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~ 195 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV-IQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG--H 195 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTS-CE-EEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--C
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc-eEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--C
Confidence 999999994333999999999999999975 32 211122234558899999999998 999999999999999953 6
Q ss_pred ceEEeecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcC
Q 018235 312 ALTSFKAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++..+..|...|++++|+|++. +++.+.. ++.|++||.++
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~ 236 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSV----DATVKLWDLRN 236 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEEEET----TSEEEEEEGGG
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEEEeC----CCEEEEEeCCC
Confidence 7888899999999999999999 6776655 89999999987
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=207.67 Aligned_cols=202 Identities=11% Similarity=0.076 Sum_probs=163.0
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|-|+. .+|++|+ .++.|+||+..
T Consensus 17 ~~~V~~lafspdg-----------~~lAsgs-----~Dg~I~lw~~~--------------------------------- 47 (902)
T 2oaj_A 17 SSKPIAAAFDFTQ-----------NLLAIAT-----VTGEVHIYGQQ--------------------------------- 47 (902)
T ss_dssp SSCEEEEEEETTT-----------TEEEEEE-----TTSEEEEECST---------------------------------
T ss_pred CCCcEEEEECCCC-----------CEEEEEe-----CCCEEEEEeCC---------------------------------
Confidence 4456788888985 4788888 46789998652
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.... .....|.+.|++++|+| + .+|++++.|++|+|||+.. .+.+..+
T Consensus 48 --------~~~~-~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~---------------------~~~~~~~ 95 (902)
T 2oaj_A 48 --------QVEV-VIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYS---------------------QKVLTTV 95 (902)
T ss_dssp --------TCEE-EEECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTT---------------------CSEEEEE
T ss_pred --------CcEE-EEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCC---------------------CcEEEEE
Confidence 1122 23346889999999999 7 5999999999999999987 4566666
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce-ecC-------ccccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN-VDP-------NPFIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~-~~~-------~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
. |...|++++|+|++. +|++|+.||.|++||++. +... ... ..+.+|...|.+|+|+|.+..+|++|+.
T Consensus 96 ~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp E-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTT-TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred c-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCC-CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 5 667899999999998 999999999999999986 3321 000 2356899999999999976558999999
Q ss_pred CCcEEEEECCCCCCceEEeecC------------------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAH------------------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h------------------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
||.| |||++++ .++..+..| ...|++++|+|++.+|+.+.. |+.|++||.++++
T Consensus 173 dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~----Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 173 YVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE----DNSLVFWDANSGH 244 (902)
T ss_dssp SCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET----TCCEEEEETTTCC
T ss_pred CCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCc
Confidence 9999 9999987 666666554 577999999999999998876 9999999998765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-22 Score=184.92 Aligned_cols=224 Identities=13% Similarity=0.108 Sum_probs=165.5
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+..... ....+|++|+ .++.|.||++.....
T Consensus 62 ~~~v~~~~~~~~~~~~g----~~~~~l~s~~-----~dg~i~iw~~~~~~~----------------------------- 103 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDA----FELCLVATTS-----FSGDLLFYRITREDE----------------------------- 103 (397)
T ss_dssp TTCEEEEEEEEEEETTT----EEEEEEEEEE-----TTSCEEEEEEEECTT-----------------------------
T ss_pred CCcEEEEEEecccccCC----ccccEEEEEc-----CCCCEEEEEccCCcc-----------------------------
Confidence 44677888888710000 0014677776 467899999852100
Q ss_pred cccCCCCCCCeEEEEEecC-----CCceeeEEEe----CCCCcE-EEEEeCCCcEEEEECCCCccccccccccccCCCCC
Q 018235 146 DDEEGGSGTPILQLRKVAH-----QGCVNRIRAM----TQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H-----~~~V~~i~~~----p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (359)
........+..| .+.|++++|+ |++ .+ |++++.+|.|++||+........ ...
T Consensus 104 -------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~------- 166 (397)
T 1sq9_A 104 -------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESN--SLT------- 166 (397)
T ss_dssp -------TCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHH--HTT-------
T ss_pred -------cccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccc--cce-------
Confidence 022334566678 5999999999 888 66 99999999999999976110000 000
Q ss_pred CCCCCCcEEe-------cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC---C---CCCeEEE
Q 018235 216 VSNQSPLVKF-------GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---H---SASVEDL 282 (359)
Q Consensus 216 ~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h---~~~V~~v 282 (359)
....+...+ ..|...+.+++|+|++ +|++|+.||.|++||+++ +... ..+.. | ...|.++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~---~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 167 -LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPL---YNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp -TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEE---EEEECCC---CCCCCEEEE
T ss_pred -eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-Ccee---EEEeccccccccCCccceE
Confidence 001222255 4588899999999988 999999999999999987 4444 55667 8 9999999
Q ss_pred EecCCCCCEEEEEeCC---CcEEEEECCCCCCceEEeec-------------CCCCEEEEEEcCCCCeEEEEeeecccce
Q 018235 283 QWSPTEPDVFASCSVD---GHIAIWDTRVGKSALTSFKA-------------HNADVNVISWNRCWLAVCWHLEVMMEHF 346 (359)
Q Consensus 283 ~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~~~~~~-------------h~~~V~~i~~s~~~~~l~~~~~~~~~d~ 346 (359)
+|+|++. +|++++.| |.|++||++++ .++..+.. |...|++++|+|++.+|+.+.. ++
T Consensus 240 ~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg 313 (397)
T 1sq9_A 240 KFSPQGS-LLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----DG 313 (397)
T ss_dssp EECSSTT-EEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----TS
T ss_pred EECCCCC-EEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----CC
Confidence 9999998 99999999 99999999987 77788887 9999999999999999988876 89
Q ss_pred EEEEEeCcCCc
Q 018235 347 LFMILDCSRGE 357 (359)
Q Consensus 347 ~i~iwd~~~g~ 357 (359)
.|++|+..+++
T Consensus 314 ~i~iwd~~~~~ 324 (397)
T 1sq9_A 314 KLRFWDVKTKE 324 (397)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEEcCCCc
Confidence 99999998765
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=183.80 Aligned_cols=197 Identities=17% Similarity=0.306 Sum_probs=156.0
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|+... ..+|++|+ .++.|.||++..
T Consensus 39 ~~~v~~~~~~~~~~~--------g~~l~~~~-----~dg~i~iw~~~~-------------------------------- 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLP--------GNFLIAGS-----WANDVRCWEVQD-------------------------------- 73 (368)
T ss_dssp SSCEEEEEECCTTSS--------SEEEEEEE-----TTSEEEEEEECT--------------------------------
T ss_pred CCceEEEEEcCCCCC--------ceEEEEEC-----CCCcEEEEEcCC--------------------------------
Confidence 446778889887310 15788887 467899999831
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
....+...+.+|.+.|++++|+|++ .+|++++.||.|++||+.. ... ..+
T Consensus 74 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~---------------------~~~-~~~ 123 (368)
T 3mmy_A 74 -------SGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS---------------------NQA-IQI 123 (368)
T ss_dssp -------TSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEE-EEE
T ss_pred -------CCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC---------------------CCc-eee
Confidence 0223436677899999999999988 7999999999999999987 233 346
Q ss_pred cCCCCceEEEEe--CCCCCCeEEEEcCCCcEEEEecCCCCcce-------------------------------------
Q 018235 226 GGHKDEGYAIDW--NPITTGRLVTGDCNSCIYLWEPASDATWN------------------------------------- 266 (359)
Q Consensus 226 ~~h~~~v~~l~~--sp~~~~~l~sgs~dg~I~lwd~~~~~~~~------------------------------------- 266 (359)
.+|...+.+++| +|++. +|++|+.||.|++||+++.....
T Consensus 124 ~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 124 AQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp EECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred ccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 679999999999 88887 89999999999999987532100
Q ss_pred -------------------------------------------------ecCccccCCCC------------CeEEEEec
Q 018235 267 -------------------------------------------------VDPNPFIGHSA------------SVEDLQWS 285 (359)
Q Consensus 267 -------------------------------------------------~~~~~~~~h~~------------~V~~v~~s 285 (359)
.....+.+|.. .|.+++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 00112234443 69999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
|++. +|++|+.||.|+|||++++ .++..+..|...|++++|+|++.+|+.+..
T Consensus 283 p~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 283 PVHG-TLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp TTTC-CEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred cCCC-EEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 9998 9999999999999999987 778888999999999999999999998865
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=187.84 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=145.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.......+.+|.+.|++++|+|++ ++++++.||+|++||+.. ...+..+.+|...|.
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~ 207 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK---------------------GCCTHVFEGHNSTVR 207 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEE
T ss_pred CCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCC---------------------CcEEEEECCCCCccE
Confidence 444556777999999999999877 899999999999999987 567788999999999
Q ss_pred EEEeCC--CCCCeEEEEcCCCcEEEEecCCCCccee-------------------cCccccCCCCCeEEEEecCCCCCEE
Q 018235 234 AIDWNP--ITTGRLVTGDCNSCIYLWEPASDATWNV-------------------DPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 234 ~l~~sp--~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
+++|++ ++. +|++|+.||+|++||++....... ....+.+|...|.++ ++++. +|
T Consensus 208 ~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l 283 (464)
T 3v7d_B 208 CLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IV 283 (464)
T ss_dssp EEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EE
T ss_pred EEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EE
Confidence 999984 555 899999999999999987432100 013567888999887 45666 99
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++|+.||.|++||++++ .++..+.+|...|.+++|+|++.+++.+.. ++.|++|+..++.
T Consensus 284 ~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASM----DTTIRIWDLENGE 343 (464)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEET----TSCEEEEETTTTE
T ss_pred EEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc
Confidence 99999999999999987 788888999999999999999999988876 8899999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=201.72 Aligned_cols=204 Identities=19% Similarity=0.265 Sum_probs=171.0
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
..-|..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 54 ~~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~vw~~~-------------------------------- 85 (814)
T 3mkq_A 54 TETPVRAGKFIARK-----------NWIIVGS-----DDFRIRVFNYN-------------------------------- 85 (814)
T ss_dssp CSSCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEETT--------------------------------
T ss_pred CCCcEEEEEEeCCC-----------CEEEEEe-----CCCeEEEEECC--------------------------------
Confidence 35678899999985 4788887 36789999873
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
.......+.+|.+.|++++|+|++ .++++++.||.|++|++.. .......
T Consensus 86 ---------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~--------------------~~~~~~~ 135 (814)
T 3mkq_A 86 ---------TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------------------NWALEQT 135 (814)
T ss_dssp ---------TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGG--------------------TSEEEEE
T ss_pred ---------CCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCC--------------------CceEEEE
Confidence 233445667899999999999999 7899999999999999986 2355678
Q ss_pred ecCCCCceEEEEeCC-CCCCeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecC--CCCCEEEEEeCCCc
Q 018235 225 FGGHKDEGYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSP--TEPDVFASCSVDGH 300 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp--~~~~~las~s~Dg~ 300 (359)
+.+|...+.+++|+| ++. .|++|+.||.|++||++.. ... ..+.. |...|.+++|+| ++. +|++++.||.
T Consensus 136 ~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~ 209 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQS-TPN---FTLTTGQERGVNYVDYYPLPDKP-YMITASDDLT 209 (814)
T ss_dssp EECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCS-SCS---EEEECCCTTCCCEEEECCSTTCC-EEEEECTTSE
T ss_pred EcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-cce---eEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCE
Confidence 889999999999999 665 9999999999999999763 322 23333 458999999999 777 9999999999
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++||++++ .++..+..|...|.+++|+|++.+++.+.. ++.|++|+..++.
T Consensus 210 i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 210 IKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSE----DGTLKIWNSSTYK 261 (814)
T ss_dssp EEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEET----TSCEEEEETTTCS
T ss_pred EEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 999999987 778888899999999999999999888876 8899999998765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=180.92 Aligned_cols=168 Identities=7% Similarity=-0.007 Sum_probs=129.8
Q ss_pred EEEEEecCCCceeeEEEeC--CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceE
Q 018235 157 LQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGY 233 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 233 (359)
+.....+|.+.|++++|+| .+ .++++++.||+|++||+.. ..++..+. .|...+.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~---------------------~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYED---------------------DSQYIVHSAKSDVEYS 174 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSS---------------------SCEEEEECCCSSCCCC
T ss_pred eEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCC---------------------CcEEEEEecCCCCceE
Confidence 3344457889999999999 88 8999999999999999987 34445453 3455899
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+++|+|++. +|++|+.||.|++||++++.... ..+.+ |...|.+++|+|++. +|++++. +.|+|||+++. ..
T Consensus 175 ~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~-~l~s~~~-~~v~iwd~~~~-~~ 247 (343)
T 3lrv_A 175 SGVLHKDSL-LLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGY-WMVVECD-QTVVCFDLRKD-VG 247 (343)
T ss_dssp EEEECTTSC-EEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSS-EEEEEES-SBEEEEETTSS-TT
T ss_pred EEEECCCCC-EEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCC-EEEEEeC-CeEEEEEcCCC-Cc
Confidence 999999998 99999999999999998843321 34666 999999999999998 9999994 59999999987 44
Q ss_pred eEEee---cCCCCEE--EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 313 LTSFK---AHNADVN--VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~~~---~h~~~V~--~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..+. .|...+. +++|+|++.+++.+... ++.+++|+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~---d~~i~v~~~~~~ 293 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE---SNSLTIYKFDKK 293 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETT---TTEEEEEEECTT
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCC---CCcEEEEEEccc
Confidence 43332 2444444 69999999999886542 667999987543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=177.06 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=155.5
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
=+..++.|.|+. .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~s~~~-----------~~l~~~~-----~d~~v~iw~~~~~-------------------------------- 43 (342)
T 1yfq_A 12 DYISDIKIIPSK-----------SLLLITS-----WDGSLTVYKFDIQ-------------------------------- 43 (342)
T ss_dssp SCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEEEETT--------------------------------
T ss_pred CcEEEEEEcCCC-----------CEEEEEc-----CCCeEEEEEeCCC--------------------------------
Confidence 356788899975 3677776 4679999998410
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCc-EEEEEeCCCcEEEEEC-CCCccccccccccccCCCCCCCCCCCcEE
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPH-ICASWADTGHVQVWDL-RSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~-~lat~s~dg~V~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
...........|.+.|++++|+|++ . ++++++.+|.|++||+ .. .....
T Consensus 44 ------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~----------------------~~~~~ 94 (342)
T 1yfq_A 44 ------AKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGS----------------------PSFQA 94 (342)
T ss_dssp ------TTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSS----------------------SSEEE
T ss_pred ------CccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccC----------------------CceEe
Confidence 0112234556899999999999998 7 8999999999999999 65 12355
Q ss_pred ecC--CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCC---------CC------------------------------
Q 018235 225 FGG--HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS---------DA------------------------------ 263 (359)
Q Consensus 225 ~~~--h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~---------~~------------------------------ 263 (359)
+.+ |...|.+++|+| +. +|++|+.|+.|++||++. ..
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 172 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred ccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeE
Confidence 666 777777777777 54 777777777777777653 11
Q ss_pred ----------cceecCccccCCCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCC-----CCceEEeecCCC------
Q 018235 264 ----------TWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVG-----KSALTSFKAHNA------ 321 (359)
Q Consensus 264 ----------~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~-----~~~~~~~~~h~~------ 321 (359)
... ......|...|.+++|+| ++. +|++++.||.|+||+++.. ......+..|..
T Consensus 173 ~i~d~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (342)
T 1yfq_A 173 QWFRLPLCEDDNG--TIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249 (342)
T ss_dssp EEEESSCCTTCCC--EEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS
T ss_pred EEEECCccccccc--eeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccc
Confidence 000 012335778899999999 888 9999999999999999876 356777777765
Q ss_pred ---CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 ---DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ---~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|++++|+|++.+|+.+.. ++.|++|+..++.
T Consensus 250 ~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 250 LAYPVNSIEFSPRHKFLYTAGS----DGIISCWNLQTRK 284 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEET----TSCEEEEETTTTE
T ss_pred cceeEEEEEEcCCCCEEEEecC----CceEEEEcCccHh
Confidence 9999999999999988876 8899999998765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=181.26 Aligned_cols=165 Identities=9% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceEEEEeCC--CC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNP--IT 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp--~~ 241 (359)
.+.|+++.++|. +++++.|++|++|+........... ....+..+ .+|...|.+++|+| ++
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK------------TNKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT------------TCCEEEEEECCCSSCEEEEECCC---C
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC------------CcceeEEeecCCCCCEEEEEcCCCCCC
Confidence 567888888885 8999999999999987522111100 12323333 36778999999999 88
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-EEeec-
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-TSFKA- 318 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~-~~~~~- 318 (359)
. +|++|+.||+|++||++++ ... ..+ ..|...|.+++|+|++. +||+|+.||.|+|||++++ ..+ ..+..
T Consensus 140 ~-~l~s~s~dg~i~~wd~~~~-~~~---~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~-~~~~~~~~~~ 212 (343)
T 3lrv_A 140 E-YFIWADNRGTIGFQSYEDD-SQY---IVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSP-DQASSRFPVD 212 (343)
T ss_dssp C-EEEEEETTCCEEEEESSSS-CEE---EEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCT-TSCCEECCCC
T ss_pred C-EEEEEeCCCcEEEEECCCC-cEE---EEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC-CCCccEEecc
Confidence 7 9999999999999999873 332 223 34566899999999998 9999999999999999998 544 67777
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...|++++|+|++.+|+.+.. + .|++||.+++.
T Consensus 213 h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~~ 246 (343)
T 3lrv_A 213 EEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKDV 246 (343)
T ss_dssp TTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSST
T ss_pred CCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCCC
Confidence 9999999999999999988864 4 89999998865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-22 Score=183.98 Aligned_cols=163 Identities=6% Similarity=0.003 Sum_probs=128.9
Q ss_pred CCCceeeEEEeCCCCcE-EEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+...+.+++|+|++..+ +|+++.|++|+|||+.. ..++..+. |..+|++|+|+|++.
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~V~~v~fspdg~ 189 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---------------------LTEKFEIE-TRGEVKDLHFSTDGK 189 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---------------------TEEEEEEE-CSSCCCEEEECTTSS
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---------------------CcEEEEeC-CCCceEEEEEccCCc
Confidence 34558899999999443 34566899999999987 45666664 677899999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC----cEEEEECCCCCC---ceEE
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----HIAIWDTRVGKS---ALTS 315 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----~I~iwD~r~~~~---~~~~ 315 (359)
+|++++. +.+++|+..++.... .....+|...|.+++|+|++. ++++++.|+ .+++|++..... ....
T Consensus 190 -~l~s~s~-~~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 190 -VVAYITG-SSLEVISTVTGSCIA--RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp -EEEEECS-SCEEEEETTTCCEEE--EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred -eEEeccc-eeEEEEEeccCccee--eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeee
Confidence 9999984 456666666633322 134567899999999999999 899998887 688999887622 1334
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..|...|++++|+|+|++|+.+.. |+.|+|||..+++
T Consensus 265 ~~~~~~~V~~~~~Spdg~~lasgs~----D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKGELAVLASN----DNSIALVKLKDLS 302 (365)
T ss_dssp EESSCSCEEEEEECTTSCEEEEEET----TSCEEEEETTTTE
T ss_pred ecCCCCCeEeEEECCCCCceEEEcC----CCEEEEEECCCCc
Confidence 6789999999999999999998876 8999999998875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=201.83 Aligned_cols=212 Identities=19% Similarity=0.254 Sum_probs=169.7
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-|..++.|.|+.. ..+|++|+ .++.|.||++..
T Consensus 53 ~~~V~~l~~s~~~~---------~~~l~s~s-----~Dg~I~vwd~~~-------------------------------- 86 (753)
T 3jro_A 53 EGPVWRVDWAHPKF---------GTILASCS-----YDGKVLIWKEEN-------------------------------- 86 (753)
T ss_dssp SSCEEEEEECCTTS---------CSEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cCceEEEEecCCCC---------CCEEEEEe-----CCCeEEEEECCC--------------------------------
Confidence 45778888887731 14777777 467899999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
..........+|.+.|++++|+|+ + .++++++.||.|++||+... ......
T Consensus 87 -------~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~-------------------~~~~~~ 139 (753)
T 3jro_A 87 -------GRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKEN-------------------GTTSPI 139 (753)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSS-------------------SCCCCE
T ss_pred -------CcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecC-------------------CCccee
Confidence 122344666789999999999998 6 89999999999999999872 124456
Q ss_pred EecCCCCceEEEEeCCC-------------CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---
Q 018235 224 KFGGHKDEGYAIDWNPI-------------TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--- 287 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~-------------~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--- 287 (359)
.+.+|...+.+++|+|. +. +|++|+.||.|++||++...........+.+|...|.+++|+|+
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 77899999999999995 65 99999999999999998744322223567889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCC----ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKS----ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~----~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+. +|++|+.||.|+|||++.+.. .+.....|...|++++|+|++.+++.+.. ++.|++|+...+
T Consensus 219 ~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~----Dg~I~vwd~~~~ 286 (753)
T 3jro_A 219 RS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKENLE 286 (753)
T ss_dssp SE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS----SSCEECCBCCSS
T ss_pred CC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC----CCEEEEEecCCC
Confidence 66 999999999999999998621 22233568899999999999999988876 889999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-21 Score=182.58 Aligned_cols=219 Identities=14% Similarity=0.145 Sum_probs=164.8
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
..-+..++.|.|+. ++++|+ .++.|.||++.
T Consensus 161 h~~~V~~l~~~~~~------------~l~s~s-----~dg~i~vwd~~-------------------------------- 191 (464)
T 3v7d_B 161 HDGGVWALKYAHGG------------ILVSGS-----TDRTVRVWDIK-------------------------------- 191 (464)
T ss_dssp CSSCEEEEEECSTT------------EEEEEE-----TTSCEEEEETT--------------------------------
T ss_pred CCcCEEEEEEcCCC------------EEEEEe-----CCCCEEEEECC--------------------------------
Confidence 34566777776652 677776 46789999872
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeC--CCCcEEEEEeCCCcEEEEECCCCcccccccccc--ccCCCCCCCCCC
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETI--VGQGAPQVSNQS 220 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~ 220 (359)
.......+.+|.+.|+++.|++ ++ .++++++.||.|++||+............. ............
T Consensus 192 ---------~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 192 ---------KGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp ---------TTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred ---------CCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 3345566778999999999995 44 799999999999999998732111000000 000000000112
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 221 ~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
.+..+.+|...+.++. +++. +|++|+.||.|++||+++ +... ..+.+|...|.+++|+|++. .|++|+.||.
T Consensus 262 ~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~-~~~~---~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~ 333 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQ-MKCL---YILSGHTDRIYSTIYDHERK-RCISASMDTT 333 (464)
T ss_dssp EEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTT-TEEE---EEECCCSSCEEEEEEETTTT-EEEEEETTSC
T ss_pred EEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCC-CcEE---EEecCCCCCEEEEEEcCCCC-EEEEEeCCCc
Confidence 3567889999998885 4565 999999999999999987 4444 56788999999999999998 9999999999
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++||++++ .++..+.+|...|.+++|+ +.+++.+.. ++.|++|+..++.
T Consensus 334 i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 334 IRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAA----DGSIRGWDANDYS 383 (464)
T ss_dssp EEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEET----TSEEEEEETTTCC
T ss_pred EEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeC----CCcEEEEECCCCc
Confidence 999999997 7888899999999999998 467777765 8999999988754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-21 Score=183.01 Aligned_cols=166 Identities=17% Similarity=0.155 Sum_probs=137.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC-CcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS-PLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~ 237 (359)
.....|...|++++|+|++ .+|++++.+|.|++|++.... ... +...+.+|...|++++|
T Consensus 143 ~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~------------------~~~~~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 143 RKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIP------------------EEKFTQEPILGHVSMLTDVHL 203 (450)
T ss_dssp EEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCC------------------CSSCCCCCSEECSSCEEEEEE
T ss_pred eecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcc------------------cccccceeeecccCceEEEEE
Confidence 3334788999999999999 789999999999999997621 011 34467789999999999
Q ss_pred CCC---CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 238 NPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 238 sp~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+|+ +. +|++|+.|+.|++||+++ +.... ..+.+|...|.+++|+ ++. +|++|+.|+.|+|||++++ .++.
T Consensus 204 sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~~--~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~-~~~~ 276 (450)
T 2vdu_B 204 IKDSDGHQ-FIITSDRDEHIKISHYPQ-CFIVD--KWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTG-KNLS 276 (450)
T ss_dssp EECTTSCE-EEEEEETTSCEEEEEESC-TTCEE--EECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTC-CEEE
T ss_pred cCCCCCCc-EEEEEcCCCcEEEEECCC-Cceee--eeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCC-cEee
Confidence 999 76 999999999999999987 34331 2256899999999999 887 9999999999999999997 6666
Q ss_pred Eee-------------------------cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 315 SFK-------------------------AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 315 ~~~-------------------------~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+. .+...|.+|+|+|++.+++.+... ++.|++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 664 234579999999999999988732 889999998
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=188.48 Aligned_cols=215 Identities=14% Similarity=0.155 Sum_probs=158.4
Q ss_pred CcceeEEEEe-ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 67 WPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 67 wP~ls~~~~p-d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
-+..++.|.| +. .+|+.|+ .++.|.||++..+.....
T Consensus 64 ~~V~~~~~s~~~~-----------~~l~s~s-----~dg~v~vwd~~~~~~~~~-------------------------- 101 (437)
T 3gre_A 64 NSITSSAVSPGET-----------PYLITGS-----DQGVIKIWNLKEIIVGEV-------------------------- 101 (437)
T ss_dssp SCEEEEEEECSSS-----------CEEEEEE-----TTSEEEEEEHHHHHTTCC--------------------------
T ss_pred CceEEEEECCCCC-----------CEEEEec-----CCceEEEeECcccccCcc--------------------------
Confidence 4677888988 64 4788887 577999999853210000
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc--cccccccccccCCCCCCCCCCCcE
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL--NALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
..+.+ ...|.+.|++++|+|++ .+|++++.||.|++||+.... ...... ...++.
T Consensus 102 -------~~~~~---~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------~~~~i~ 158 (437)
T 3gre_A 102 -------YSSSL---TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFL------------NCECIR 158 (437)
T ss_dssp -------CSCSE---EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEE------------EEEEEE
T ss_pred -------cceee---eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeecc------------ccceeE
Confidence 01122 23699999999999988 799999999999999995210 000000 001122
Q ss_pred Eec--C--CCCceEEEE--eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC--CCCCeEEEEecCCCCCEEEEE
Q 018235 224 KFG--G--HKDEGYAID--WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 224 ~~~--~--h~~~v~~l~--~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~ 295 (359)
.+. . +...+.++. +++++. +|++|+.||.|++||+++ +... ..+.+ |...|.+++|+|++. +|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~-~~~~---~~~~~~~h~~~v~~~~~s~~~~-~l~s~ 232 (437)
T 3gre_A 159 KINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRT-LERL---QIIENSPRHGAVSSICIDEECC-VLILG 232 (437)
T ss_dssp EEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTT-CCEE---EEEECCGGGCCEEEEEECTTSC-EEEEE
T ss_pred EEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC-Ceee---EEEccCCCCCceEEEEECCCCC-EEEEE
Confidence 221 1 455667776 667787 999999999999999987 4444 45666 889999999999988 99999
Q ss_pred eCCCcEEEEECCCCCCceEEee-cCCCCEEEEEEcC----CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 296 SVDGHIAIWDTRVGKSALTSFK-AHNADVNVISWNR----CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~-~h~~~V~~i~~s~----~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.||.|+|||++.+ .++..+. .|...|++++|+| ++.+++.+.. ++.|++||.+++.
T Consensus 233 ~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~ 294 (437)
T 3gre_A 233 TTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGH 294 (437)
T ss_dssp ETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTE
T ss_pred cCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCc
Confidence 99999999999997 7777774 7888999996665 5667777765 8999999998765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-21 Score=180.09 Aligned_cols=170 Identities=20% Similarity=0.314 Sum_probs=145.1
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.....+|.+.|++|+|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...+.+++|
T Consensus 140 ~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 140 LLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSLSW 197 (420)
T ss_dssp EEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEE
T ss_pred EEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC---------------------CcEEEEEeCCCCceEEEee
Confidence 34556788999999999999 8999999999999999987 6778899999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---CceE
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK---SALT 314 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~---~~~~ 314 (359)
++ . +|++|+.|+.+++||.+...... ..+.+|...+..+.|+|.+. ++++++.|+.|+|||.+.+. ..+.
T Consensus 198 ~~--~-~l~sgs~d~~i~~~d~~~~~~~~---~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 198 NS--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp ET--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred CC--C-EEEEEeCCCceeEeeecccceee---EEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeee
Confidence 64 3 99999999999999998744443 66889999999999999999 99999999999999998762 2455
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
....|...|.+++|+|.+..++... .+..|+.|++||..++.
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~-~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATG-GGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEE-ECTTTCEEEEEETTTTE
T ss_pred eecccCCceeeeeeCCCcccEEEEE-eecCCCEEEEEeCCccc
Confidence 6688999999999999887655432 23458999999998875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=192.96 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=147.4
Q ss_pred eEEEEEecCCCc-eeeEEEeC--CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 156 ILQLRKVAHQGC-VNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 156 ~~~~~~~~H~~~-V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
.....+.+|.+. |++++|+| ++ .+||+++.||.|+|||+........ . ....+..+.+|...+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~-~------------~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNS-V------------EVNVKSEFQVLAGPI 119 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTE-E------------EEEEEEEEECCSSCE
T ss_pred ccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccccc-c------------cccccchhhcccccE
Confidence 344667799999 99999999 88 8999999999999999964100000 0 024566788899999
Q ss_pred EEEEeCCCCCCeEEEEcCC----CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 233 YAIDWNPITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+++|+|++. +|++++.+ +.|++||. +... ..+.+|...|.+++|+|++..+|++++.|+.|++||+++
T Consensus 120 ~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~---~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 120 SDISWDFEGR-RLCVVGEGRDNFGVFISWDS---GNSL---GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp EEEEECTTSS-EEEEEECCSSCSEEEEETTT---CCEE---EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred EEEEEeCCCC-EEEEeccCCCCccEEEEEEC---CCcc---eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC
Confidence 9999999998 99999887 78999983 3333 567899999999999999987899999999999999998
Q ss_pred CCCceEEeecCCC---CEEEEEEcCC-CCeEEEEeeecccceEEEEEeCcCCc
Q 018235 309 GKSALTSFKAHNA---DVNVISWNRC-WLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 309 ~~~~~~~~~~h~~---~V~~i~~s~~-~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
. ..+..+..|.. .|++++|+|+ +.+++.+.. ++.|++|+..++.
T Consensus 193 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 193 F-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDGKSGE 240 (615)
T ss_dssp B-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEETTTCC
T ss_pred c-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEEEECCCCC
Confidence 7 77788888999 9999999999 999888876 8899999988765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-21 Score=175.86 Aligned_cols=159 Identities=14% Similarity=0.211 Sum_probs=120.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE-----------
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI----------- 235 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l----------- 235 (359)
.+..+.+.+.+..++++++.+++|+|||+... +++..+. |...+.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~---------------------~~~~~~~-~~~~v~~v~~~~~~~~~~~ 117 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK---------------------QDVSRIK-VDAPVKDLFLSREFIVVSY 117 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTT---------------------EEEEEEE-CSSCEEEEEECSSEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCC---------------------cEEEEEE-CCCceEEEEEcCCEEEEEE
Confidence 58888898888555577888899999998762 2222222 12233333
Q ss_pred --------------------------EeCCCCCCeEEE--EcCCCcEEEEecCCCCcc-----------eec-CccccCC
Q 018235 236 --------------------------DWNPITTGRLVT--GDCNSCIYLWEPASDATW-----------NVD-PNPFIGH 275 (359)
Q Consensus 236 --------------------------~~sp~~~~~l~s--gs~dg~I~lwd~~~~~~~-----------~~~-~~~~~~h 275 (359)
++++ . +++. |+.+|.|++||++.+..+ ..+ ...+.+|
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIRFGGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEEEEEEEEEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred cCEEEEEECCCCceeeEEeccCCceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 3333 2 4554 688999999999863310 001 3568899
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCceEEee-c-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK-A-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~-~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
...|.+++|+|++. +||+|+.|++ |+|||++++ .++..+. + |...|++++|+|++.+|+.+.. ++.|++|+
T Consensus 195 ~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~----d~~v~iw~ 268 (355)
T 3vu4_A 195 TNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSD----KWTLHVFE 268 (355)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEET----TCEEEEEE
T ss_pred CCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC----CCEEEEEE
Confidence 99999999999998 9999999998 999999998 7778886 5 9999999999999999998876 89999999
Q ss_pred CcCC
Q 018235 353 CSRG 356 (359)
Q Consensus 353 ~~~g 356 (359)
...+
T Consensus 269 ~~~~ 272 (355)
T 3vu4_A 269 IFND 272 (355)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=177.97 Aligned_cols=172 Identities=14% Similarity=0.190 Sum_probs=139.9
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCc-EEecCCCCc
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDE 231 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~ 231 (359)
.+.....+|.+.|++++|+|+++.++++++. ||.|+|||+.. .... ....+|...
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~---------------------~~~~~~~~~~~~~~ 67 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH---------------------GDLKLLREIEKAKP 67 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS---------------------SSEEEEEEEEESSC
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC---------------------CcccceeeecccCc
Confidence 4445667899999999999999778888887 99999999987 2222 223378899
Q ss_pred eEEEEeCCC---CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEe------cCCCCCEEEEEeCCCcEE
Q 018235 232 GYAIDWNPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW------SPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 232 v~~l~~sp~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~------sp~~~~~las~s~Dg~I~ 302 (359)
|.+++|+|+ +. +|++|+.||.|++||+....... ..+.+|...|.+++| +|++. +|++|+.||.|+
T Consensus 68 v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~ 142 (357)
T 3i2n_A 68 IKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMPV---YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVK 142 (357)
T ss_dssp EEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSCS---EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEE
T ss_pred EEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCccE---EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEE
Confidence 999999999 45 99999999999999998743233 678899999999955 67787 999999999999
Q ss_pred EEECCCCCCceEEeecCCC----CEEEEE----EcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 303 IWDTRVGKSALTSFKAHNA----DVNVIS----WNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~----~V~~i~----~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+||++.+..++..+..|.. .|++++ |+|++.+++.+.. ++.|++|+.+++.
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMA 201 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTE
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCc
Confidence 9999987446777766554 899998 7889999998876 8899999998765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=170.82 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=139.5
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEE
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAID 236 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~ 236 (359)
...+..|.+.|.++.+.|....++++++.+|.|++||.. .+...+.. |...+.+++
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----------------------~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----------------------KVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----------------------EEEEEECSSCSSCEEEEE
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----------------------ceEEEEeccCcccEEEEE
Confidence 355668999999999999444899999999999999933 34556666 888999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|++. |++|+.||.|++||+++ ++.. ..+.+|...|.+++|+|++. |++++.||.|++||++++ .++..+
T Consensus 192 ~~~~~~--~~~~~~dg~i~i~d~~~-~~~~---~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~-~~~~~~ 262 (313)
T 3odt_A 192 VVDDGH--FISCSNDGLIKLVDMHT-GDVL---RTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG-SLKQVI 262 (313)
T ss_dssp EEETTE--EEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTC-CEEEEE
T ss_pred EcCCCe--EEEccCCCeEEEEECCc-hhhh---hhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCC-ceeEEE
Confidence 999875 88999999999999987 4444 56788999999999999984 889999999999999998 778888
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..|...|++++|+|++.+++ +.. ++.|++|+..++..
T Consensus 263 ~~~~~~i~~~~~~~~~~~~~-~~~----dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 263 TLPAISIWSVDCMSNGDIIV-GSS----DNLVRIFSQEKSRW 299 (313)
T ss_dssp ECSSSCEEEEEECTTSCEEE-EET----TSCEEEEESCGGGC
T ss_pred eccCceEEEEEEccCCCEEE-EeC----CCcEEEEeCCCCce
Confidence 99999999999999998554 444 88999999987653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=179.84 Aligned_cols=124 Identities=15% Similarity=0.314 Sum_probs=107.6
Q ss_pred EEEecCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC-cEEecCCCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKFGGHKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l 235 (359)
..+.+|.+.|++++|+|++ ..+|++++.||.|+|||+... ... ...+.+|...|.++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------~~~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------GQTIPKAQQMHTGPVLDV 92 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--------------------SCEEEEEEEECSSCEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--------------------CceeEEEeccccCCEEEE
Confidence 4567899999999999984 389999999999999999861 233 36788999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEe--cCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW--SPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+|+|++. +|++|+.||.|++||+++ +... .+.+|...|.+++| +|++. +|++++.||.|++||++++
T Consensus 93 ~~~~~~~-~l~s~~~dg~v~iwd~~~-~~~~----~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 93 CWSDDGS-KVFTASCDKTAKMWDLSS-NQAI----QIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTT-TEEE----EEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCS
T ss_pred EECcCCC-EEEEEcCCCcEEEEEcCC-CCce----eeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCC
Confidence 9999998 999999999999999987 4433 35679999999999 88887 9999999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=206.53 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=150.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|++++|+|++ .++|+|+.||+|+|||+.. ...+..+.+|...|.+++|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAFS 666 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEC
T ss_pred EEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEEe
Confidence 4667999999999999999 7999999999999999987 67788999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|++. +|++|+.||+|++||+.+ +... ..+.+|...|.+++|+|.+ ..++++|+.|+.|++||++++ .++..+.
T Consensus 667 ~~~~-~l~s~~~d~~v~vwd~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~ 740 (1249)
T 3sfz_A 667 SDDS-YIATCSADKKVKIWDSAT-GKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMF 740 (1249)
T ss_dssp TTSS-EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEEC
T ss_pred cCCC-EEEEEeCCCeEEEEECCC-CceE---EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheec
Confidence 9998 999999999999999987 5544 6788999999999999952 238999999999999999998 7788889
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|...|++++|+|++.+++.+.. ++.|++|+..++.
T Consensus 741 ~h~~~v~~~~~sp~~~~l~s~s~----dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDDELLASCSA----DGTLRLWDVRSAN 776 (1249)
T ss_dssp CCSSCEEEEEECSSTTEEEEEES----SSEEEEEEGGGTE
T ss_pred CCCCCEEEEEEecCCCEEEEEEC----CCeEEEEeCCCCc
Confidence 99999999999999999998876 8999999987763
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-21 Score=204.90 Aligned_cols=202 Identities=19% Similarity=0.297 Sum_probs=164.7
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|++ .++++|+ .++.|.||++.
T Consensus 616 ~~v~~~~~s~~~-----------~~l~s~~-----~d~~i~vw~~~---------------------------------- 645 (1249)
T 3sfz_A 616 DAVYHACFSQDG-----------QRIASCG-----ADKTLQVFKAE---------------------------------- 645 (1249)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT----------------------------------
T ss_pred ccEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC----------------------------------
Confidence 445667777774 4677776 46789999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.......+.+|.+.|++++|+|++ .++|+++.||.|+|||+.. .+++..+.
T Consensus 646 -------~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~---------------------~~~~~~~~ 696 (1249)
T 3sfz_A 646 -------TGEKLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSAT---------------------GKLVHTYD 696 (1249)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEE
T ss_pred -------CCCEEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCC---------------------CceEEEEc
Confidence 333445667999999999999999 8999999999999999987 67788999
Q ss_pred CCCCceEEEEeCCCCC-CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 227 GHKDEGYAIDWNPITT-GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~-~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
+|...+.+++|+|.+. .++++|+.||.|++||+++ +... ..+.+|...|.+++|+|++. +|++|+.||.|++||
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~---~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECR---NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWD 771 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEE---EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchh---heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEe
Confidence 9999999999999533 2889999999999999987 4444 56789999999999999999 999999999999999
Q ss_pred CCCCCCceEEe-------------------------------------------------------ecCCCCEEEEEEcC
Q 018235 306 TRVGKSALTSF-------------------------------------------------------KAHNADVNVISWNR 330 (359)
Q Consensus 306 ~r~~~~~~~~~-------------------------------------------------------~~h~~~V~~i~~s~ 330 (359)
++++ .....+ .+|...|.+++|+|
T Consensus 772 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 772 VRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp GGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred CCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence 8765 221111 26777888888999
Q ss_pred CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 331 CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 331 ~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.+++.+.. ++.+++|+..++.
T Consensus 851 ~~~~l~~~~~----dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 851 YDHLAVIALS----QYCVELWNIDSRL 873 (1249)
T ss_dssp STTEEEEECS----SSCEEEEETTTTE
T ss_pred CCCEEEEEeC----CCeEEEEEcCCCc
Confidence 8888887766 7889999887654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-20 Score=167.10 Aligned_cols=197 Identities=15% Similarity=0.184 Sum_probs=158.1
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.| |+. .+|++|+ .++.|.||++.
T Consensus 19 ~~v~~~~~-~~~-----------~~l~s~~-----~dg~v~vw~~~---------------------------------- 47 (313)
T 3odt_A 19 QDVRDVVA-VDD-----------SKVASVS-----RDGTVRLWSKD---------------------------------- 47 (313)
T ss_dssp SCEEEEEE-EET-----------TEEEEEE-----TTSEEEEEEES----------------------------------
T ss_pred CCcEEEEe-cCC-----------CEEEEEE-----cCCcEEEEECC----------------------------------
Confidence 35566777 764 3677777 46799999983
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..........|.+.|++++|+|++ .++++++.+|.|++|++.... ...++..+.
T Consensus 48 -------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~~ 101 (313)
T 3odt_A 48 -------DQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS------------------GEDPLYTLI 101 (313)
T ss_dssp -------SSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT------------------TSCC-CEEC
T ss_pred -------CCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC------------------CCCcccchh
Confidence 334556677899999999999998 899999999999999997621 235677889
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|...+.+++| ++. +|++|+.||.|++||. .... ..+..|...|.+++|+|....+|++++.||.|++||.
T Consensus 102 ~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d~---~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~ 172 (313)
T 3odt_A 102 GHQGNVCSLSF--QDG-VVISGSWDKTAKVWKE---GSLV---YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172 (313)
T ss_dssp CCSSCEEEEEE--ETT-EEEEEETTSEEEEEET---TEEE---EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred hcccCEEEEEe--cCC-EEEEEeCCCCEEEEcC---CcEE---EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence 99999999999 344 9999999999999992 3333 5677899999999999943349999999999999994
Q ss_pred CCCCCceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ .....+.. |...|.+++|+|++. ++.+.. ++.|++|+.++++
T Consensus 173 ~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~ 216 (313)
T 3odt_A 173 D---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGD 216 (313)
T ss_dssp T---EEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCC
T ss_pred C---ceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchh
Confidence 3 45566655 999999999999998 555554 8899999998765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=185.72 Aligned_cols=165 Identities=13% Similarity=0.147 Sum_probs=130.2
Q ss_pred EEEEEec--CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceE
Q 018235 157 LQLRKVA--HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGY 233 (359)
Q Consensus 157 ~~~~~~~--H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 233 (359)
....+.. |.+.|++++|+|++ .+|++++.||.|++||++. ..++..+. .|...|.
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRF---------------------NVLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTT---------------------TEEEEEEBCTTCEEEE
T ss_pred eeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCC---------------------ccEEEEEecCCCCceE
Confidence 3344445 89999999999998 8999999999999999987 56667765 7778999
Q ss_pred EEEeCC----CCCCeEEEEcCCCcEEEEecCCCCcceecCc---------------------cccC--CCCCeEEEEecC
Q 018235 234 AIDWNP----ITTGRLVTGDCNSCIYLWEPASDATWNVDPN---------------------PFIG--HSASVEDLQWSP 286 (359)
Q Consensus 234 ~l~~sp----~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~---------------------~~~~--h~~~V~~v~~sp 286 (359)
+++|+| ++. +|++|+.||.|++||++++ ....... .+.+ |...|.+++|+
T Consensus 262 ~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 262 HVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS- 338 (437)
T ss_dssp EEEECTTTCTTEE-EEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred EEEeccccCCCcc-EEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence 997765 455 8999999999999999863 2210000 1233 77789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCceEEeec-------------------------------------CCCCEEEEEEc
Q 018235 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-------------------------------------HNADVNVISWN 329 (359)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-------------------------------------h~~~V~~i~~s 329 (359)
.+. +|++|+.||.|++||++++ ..+..+.. |...|++|+|+
T Consensus 339 ~~~-~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~ 416 (437)
T 3gre_A 339 NDK-ILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC 416 (437)
T ss_dssp TTE-EEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred Cce-EEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence 555 9999999999999999987 55555543 89999999999
Q ss_pred CC--CCeEEEEeeecccceEEEEEe
Q 018235 330 RC--WLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 330 ~~--~~~l~~~~~~~~~d~~i~iwd 352 (359)
++ +.+|+.+.. ++.|++|+
T Consensus 417 ~~~~~~~l~s~~~----dG~I~iw~ 437 (437)
T 3gre_A 417 EVDETPLLVACDN----SGLIGIFQ 437 (437)
T ss_dssp ESSSSEEEEEEET----TSCEEEEC
T ss_pred ccCCceEEEEEcC----CceEEEeC
Confidence 98 667777766 89999995
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=185.74 Aligned_cols=207 Identities=13% Similarity=0.138 Sum_probs=168.1
Q ss_pred Cc-ceeEEEEe--ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 67 WP-CLSFDIVR--DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 67 wP-~ls~~~~p--d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
-+ ..++.|.| +. .+|++|. .++.|.||++..-.....
T Consensus 64 ~~~v~~~~~sp~~~~-----------~~l~s~~-----~dg~v~vw~~~~~~~~~~------------------------ 103 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGS-----------QYLCSGD-----ESGKVIVWGWTFDKESNS------------------------ 103 (615)
T ss_dssp TSCEEEEEECSSTTC-----------CEEEEEE-----TTSEEEEEEEEEEGGGTE------------------------
T ss_pred CceEEEEEECcCCCC-----------CEEEEec-----CCCEEEEEeCCCCccccc------------------------
Confidence 44 66788888 74 4777777 367899999942100000
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCC
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (359)
....+...+..|.+.|++++|+|++ .++++++.+ +.|++||. .
T Consensus 104 ---------~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~-----------------------~ 150 (615)
T 1pgu_A 104 ---------VEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS-----------------------G 150 (615)
T ss_dssp ---------EEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT-----------------------C
T ss_pred ---------ccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEEC-----------------------C
Confidence 0234446667899999999999999 678888877 78888882 3
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC---CeEEEEecCC-CCCEEEEE
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA---SVEDLQWSPT-EPDVFASC 295 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~v~~sp~-~~~~las~ 295 (359)
.++..+.+|...+++++|+|++..+|++|+.|+.|++||+.. .... ..+.+|.. .|.+++|+|+ +. +|+++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~ 225 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFS---ASDRTHHKQGSFVRDVEFSPDSGE-FVITV 225 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEE---EEECSSSCTTCCEEEEEECSTTCC-EEEEE
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-ccee---eeecccCCCCceEEEEEECCCCCC-EEEEE
Confidence 456788899999999999999976899999999999999876 4444 56778998 9999999999 77 99999
Q ss_pred eCCCcEEEEECCCCCCceEEe-e---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 296 SVDGHIAIWDTRVGKSALTSF-K---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~-~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.||.|++||++++ +.+..+ . .|...|++++|+ ++.+++.+.. ++.|++|+..++.
T Consensus 226 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 226 GSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSK 285 (615)
T ss_dssp ETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTE
T ss_pred eCCCeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCc
Confidence 99999999999987 677777 5 899999999999 9998888876 8899999998765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=175.31 Aligned_cols=219 Identities=11% Similarity=0.009 Sum_probs=138.4
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..+++|.|....... ....+|+.|. .++.|+||++.
T Consensus 137 ~~v~~v~~~p~~~~~~~---~d~~~las~s-----~D~tv~~Wd~~---------------------------------- 174 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNR---LAEQVIASVG-----DDCTLIIWRLT---------------------------------- 174 (393)
T ss_dssp SCEEEEEEEEEECTTCS---EEEEEEEEEE-----TTSEEEEEEEE----------------------------------
T ss_pred CceEEEEEccccccccC---CCCCEEEEEE-----CCCeEEEEECC----------------------------------
Confidence 45678888874321110 0135777776 57899999984
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCC----CCCCCCCc
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP----QVSNQSPL 222 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 222 (359)
.........+|.+.|.+++|+|.++.+|++++.||+|++||+..................- ........
T Consensus 175 -------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 175 -------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp -------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred -------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 3334466778999999999999987799999999999999998743211111000000000 00001122
Q ss_pred EEecCCCCceEEEEeC-CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEE------------------E
Q 018235 223 VKFGGHKDEGYAIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL------------------Q 283 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~s-p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v------------------~ 283 (359)
....+|...+.++.|+ +++. +|++++.|++|++||+... ... ..+..|...+..+ .
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFAN-NDY---NEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp ----CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCCE
T ss_pred eecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccC-CCC---ceEeeecCccccEEEccccccccccCcceeEE
Confidence 3446788899999987 6777 9999999999999999763 221 2233333333322 3
Q ss_pred ecC-CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 284 WSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 284 ~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
|+| .+..++++|+.||+|+|||+.++ .++..+..|..+|++++|+|+|++|+.+..
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 333 33436677889999999999987 667777789999999999999999998864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-20 Score=176.93 Aligned_cols=164 Identities=19% Similarity=0.290 Sum_probs=139.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|+++.| ++ .++++|+.||.|++||+.. ...+..+.+|...+.++
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT---------------------GEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS---------------------CCEEEEECCCCSCEEEE
T ss_pred eEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCcEEEE
Confidence 344667789999999999 44 7999999999999999987 57788899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|++ ++|++|+.||.|++||++.... ......+.+|...|.+++| ++. +|++|+.||.|++||++++ ..+..
T Consensus 220 ~~~~---~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~-~~~~~ 291 (435)
T 1p22_A 220 RFNN---GMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTC-EFVRT 291 (435)
T ss_dssp ECCT---TEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTC-CEEEE
T ss_pred EEcC---CEEEEeeCCCcEEEEeCCCCCC-ceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcC-cEEEE
Confidence 9974 3999999999999999987432 2112457789999999999 455 9999999999999999998 78888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..|...|.+++|+ +.+++.+.. ++.|++||.+++.
T Consensus 292 ~~~~~~~v~~~~~~--~~~l~~g~~----dg~i~iwd~~~~~ 327 (435)
T 1p22_A 292 LNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGA 327 (435)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCC
T ss_pred EcCCCCcEEEEEeC--CCEEEEEeC----CCeEEEEECCCCC
Confidence 89999999999995 567777765 8899999998775
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=180.08 Aligned_cols=172 Identities=14% Similarity=0.230 Sum_probs=118.1
Q ss_pred EEecCCCceeeEEEeC--------CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc
Q 018235 160 RKVAHQGCVNRIRAMT--------QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p--------~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (359)
.+.+|.+.|++++|+| ++ ++|||++.|++|+|||+.. ..++..+.+|...
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~---------------------~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTD---------------------EGPILAGYPLSSP 188 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEET---------------------TEEEEEEEECSSC
T ss_pred ccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCC---------------------CceeeeecCCCCC
Confidence 4568999999999998 45 7999999999999999976 4566677788899
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee---------------------cCccccCCCCCeEEEEec-CCCC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV---------------------DPNPFIGHSASVEDLQWS-PTEP 289 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~---------------------~~~~~~~h~~~V~~v~~s-p~~~ 289 (359)
+.+++|+|.+..+|++|+.||+|++||++++..... ......+|...|.++.|+ |++.
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 999999999865899999999999999987421110 011234688899999997 6777
Q ss_pred CEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCC-------------------CCeEEEEeeecccceEEEE
Q 018235 290 DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC-------------------WLAVCWHLEVMMEHFLFMI 350 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~-------------------~~~l~~~~~~~~~d~~i~i 350 (359)
.|++++.|+++++||++.+ .....+..|...+..+.+.|+ +..++.... .++.|++
T Consensus 269 -~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs---~Dg~V~l 343 (393)
T 4gq1_A 269 -GILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS---QHGLIQL 343 (393)
T ss_dssp -EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET---TTTEEEE
T ss_pred -EEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC---CCCEEEE
Confidence 9999999999999999886 444445555554544444432 333333322 3899999
Q ss_pred EeCcCCcc
Q 018235 351 LDCSRGEI 358 (359)
Q Consensus 351 wd~~~g~v 358 (359)
|+..++..
T Consensus 344 wd~~~~~~ 351 (393)
T 4gq1_A 344 INTYEKDS 351 (393)
T ss_dssp EETTCTTC
T ss_pred EECCCCcE
Confidence 99988753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=174.37 Aligned_cols=163 Identities=18% Similarity=0.288 Sum_probs=136.8
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|.++.|++ .++++++.||.|++||+.... .......+.+|...+.++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT------------------DITLRRVLVGHRAAVNVV 262 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS------------------CCEEEEEECCCSSCEEEE
T ss_pred cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC------------------CceeeeEecCCCCcEEEE
Confidence 44566778999999999974 589999999999999998721 011226788999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+| ++. +|++|+.||.|++||+++ +... ..+.+|...|.+++|+ +. ++++|+.||.|++||++++ .++..
T Consensus 263 ~~--~~~-~l~s~~~dg~i~vwd~~~-~~~~---~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~-~~~~~ 331 (435)
T 1p22_A 263 DF--DDK-YIVSASGDRTIKVWNTST-CEFV---RTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG-ACLRV 331 (435)
T ss_dssp EE--ETT-EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC-CEEEE
T ss_pred Ee--CCC-EEEEEeCCCeEEEEECCc-CcEE---EEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC-CEEEE
Confidence 99 455 999999999999999987 4444 5788999999999995 44 9999999999999999998 78888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|...|++++| ++.+++.+.. ++.|++|+...+
T Consensus 332 ~~~h~~~v~~~~~--~~~~l~sg~~----dg~i~vwd~~~~ 366 (435)
T 1p22_A 332 LEGHEELVRCIRF--DNKRIVSGAY----DGKIKVWDLVAA 366 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEET----TSCEEEEEHHHH
T ss_pred EeCCcCcEEEEEe--cCCEEEEEeC----CCcEEEEECCCC
Confidence 9999999999999 6778887766 899999997543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=160.99 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=141.8
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
...+..+|...|++++|+|++ .++|+|+.||+|+||++.. .+.+..+.+|...+.++.
T Consensus 59 ~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~---------------------~~~~~~~~~h~~~~~~~~ 116 (318)
T 4ggc_A 59 QLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSLS 116 (318)
T ss_dssp EEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC---------------------ceeEEEecCccceEEEee
Confidence 334556789999999999999 8999999999999999987 677888999999888877
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC---ce
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---AL 313 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~ 313 (359)
+.+ . .|++|+.++.+++|+........ ..+.+|...+..+.|++.+. +|++++.||+|+|||++++.. ..
T Consensus 117 ~~~--~-~l~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 117 WNS--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp EET--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred cCC--C-EEEEEecCCceEeeecCCCceeE---EEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccce
Confidence 754 4 89999999999999987744443 56789999999999999999 999999999999999998622 34
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.....|...|.++.|+|.+..++... .+..++.|++|+...+.
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATG-GGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEE-ECTTTCEEEEEETTTCC
T ss_pred eeecccCCceEEEEecCCCCcEEEEE-ecCCCCEEEEEeccccc
Confidence 45577888999999999887665432 23457899999987754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-20 Score=170.63 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=120.4
Q ss_pred eeeEEEeCCCCcEEEE-EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC-cEEecCCCCceEEEEeCCCCCCeE
Q 018235 168 VNRIRAMTQNPHICAS-WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 168 V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
...+.+++ . .++++ |+.+|.|++||+............. ......| +..+.+|...|.+++|+|++. +|
T Consensus 140 ~~~~~~s~-~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l 210 (355)
T 3vu4_A 140 GGVCEFSN-G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGV------QQKAILGKGVLIKAHTNPIKMVRLNRKSD-MV 210 (355)
T ss_dssp EEEEEEET-T-EEEEEESSCTTCEEEEECCC------------------------CCEEECCCSSCEEEEEECTTSS-EE
T ss_pred CceEEEEc-c-EEEEeCCCcCcEEEEEECCCCCccccccccc------cccccCcccEEEEccCCceEEEEECCCCC-EE
Confidence 33455666 3 34333 6899999999998621000000000 0001234 788999999999999999998 99
Q ss_pred EEEcCCCc-EEEEecCCCCcceecCcccc-C-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-ceEEe-----
Q 018235 246 VTGDCNSC-IYLWEPASDATWNVDPNPFI-G-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSF----- 316 (359)
Q Consensus 246 ~sgs~dg~-I~lwd~~~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~----- 316 (359)
+||+.||+ |++||+++ +..+ ..+. + |...|.+++|+|++. +|++|+.|++|+|||++.... ....+
T Consensus 211 ~s~s~d~~~v~iwd~~~-~~~~---~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTED-GVLV---REFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEETTCSEEEEEETTT-CCEE---EEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeCCCCEEEEEECCC-CcEE---EEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99999998 99999987 4444 4566 5 999999999999999 999999999999999986521 11111
Q ss_pred ----------------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 317 ----------------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 317 ----------------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..+......++|++++..++.... ++.+.+|+...+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~----dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH----TRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT----TTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC----CCeEEEEEEEcC
Confidence 111223477899999998888876 888999986543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=178.50 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=148.7
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
+-+..++.|-||+ .++++++. +..+.||+..
T Consensus 85 ~~~V~~vawSPdG-----------~~LAs~s~-----dg~V~iwd~~--------------------------------- 115 (588)
T 2j04_A 85 VCYPRVCKPSPID-----------DWMAVLSN-----NGNVSVFKDN--------------------------------- 115 (588)
T ss_dssp SCCEEEEEECSSS-----------SCEEEEET-----TSCEEEEETT---------------------------------
T ss_pred CCcEEEEEECCCC-----------CEEEEEeC-----CCcEEEEeCC---------------------------------
Confidence 4567899999986 46777773 4578888741
Q ss_pred cccCCCCCCCeEEEEEecCCC-----ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC
Q 018235 146 DDEEGGSGTPILQLRKVAHQG-----CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~-----~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (359)
. +...+. |.. .|.+++|+|+| .+||+|+.||+|+|||+.... -..
T Consensus 116 --------~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~------------------l~~ 165 (588)
T 2j04_A 116 --------K--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNS------------------ENT 165 (588)
T ss_dssp --------E--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCT------------------TTC
T ss_pred --------c--eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCc------------------ccc
Confidence 1 223333 554 59999999999 899999999999999998721 001
Q ss_pred ----CcEEe----cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCE
Q 018235 221 ----PLVKF----GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDV 291 (359)
Q Consensus 221 ----~~~~~----~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~ 291 (359)
.+.++ .+|...|++++|+|++ |++++.|++|++|++... ......+.+ .+|...|.+++|+ +. .
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~-~~~~~~~tL~~~h~~~V~svaFs--g~-~ 238 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSAS-SHQPVSRMIQNASRRKITDLKIV--DY-K 238 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSS-SSCCCEEEEECCCSSCCCCEEEE--TT-E
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCC-ccccceeeecccccCcEEEEEEE--CC-E
Confidence 24565 7788899999999987 788888999999999763 321001335 4788999999999 55 8
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE--cCCCCeEEEEeeecccceEEEEEeCc
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~--s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+|+++ +++|++||+..+ .......+|.+.|+.+.| +|++..++.+.. ++. ++|...
T Consensus 239 LASa~-~~tIkLWd~~~~-~~~~~~~gh~~~V~~va~~~s~d~~~La~a~e----dG~-klw~~d 296 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNY-SISSLKTGSLENFHIIPLNHEKESTILLMSNK----TSY-KVLLED 296 (588)
T ss_dssp EEEEC-SSEEEEEETTTT-EEEEEECSCCSCCCEEEETTCSSCEEEEECSS----CEE-EEEESS
T ss_pred EEEEe-CCeEEEEECCCC-eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcC----CCC-EEEeec
Confidence 89887 699999999985 332223389999999999 999988888776 788 999763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=173.13 Aligned_cols=161 Identities=18% Similarity=0.288 Sum_probs=132.2
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|+++.|++ .++++++.||.|++||+.. .+.+..+.+|...|.++
T Consensus 150 ~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET---------------------GECIHTLYGHTSTVRCM 205 (445)
T ss_dssp CEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred cEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc---------------------CcEEEEECCCCCcEEEE
Confidence 34566778999999999983 6899999999999999987 56677888899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
.|++ . .|++|+.||+|++||+++ +... ..+.+|...|.+++| ++. +|++|+.||.|++||++++ .++..
T Consensus 206 ~~~~--~-~l~s~s~dg~i~~wd~~~-~~~~---~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~-~~~~~ 274 (445)
T 2ovr_B 206 HLHE--K-RVVSGSRDATLRVWDIET-GQCL---HVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETE-TCLHT 274 (445)
T ss_dssp EEET--T-EEEEEETTSEEEEEESSS-CCEE---EEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGT-EEEEE
T ss_pred EecC--C-EEEEEeCCCEEEEEECCC-CcEE---EEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCC-cEeEE
Confidence 9963 3 799999999999999877 4443 567788899999988 455 7889999999999999887 67778
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..|...|.+++| ++..++.+.. ++.|++||.+++.
T Consensus 275 ~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 275 LQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGN 310 (445)
T ss_dssp ECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCC
T ss_pred ecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCC
Confidence 8888889999988 6777777765 7888899887765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=165.97 Aligned_cols=160 Identities=20% Similarity=0.370 Sum_probs=133.9
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....+.+|.+.|+++.+ ++ .++++++.||.|++||+.. ..++..+.+|...+.+++
T Consensus 231 ~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 231 CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPET---------------------ETCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGG---------------------TEEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCC---------------------CcEeEEecCCCCceEEEE
Confidence 44566688889998888 34 6788888899999999876 567788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
| ++. +|++|+.||.|++||+++ +... ..+.+|...+.++.++ +. +|++|+.||.|++||++++ .++..+
T Consensus 287 ~--~~~-~l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~~-~~~~~~ 355 (445)
T 2ovr_B 287 F--DGI-HVVSGSLDTSIRVWDVET-GNCI---HTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTG-QCLQTL 355 (445)
T ss_dssp E--CSS-EEEEEETTSCEEEEETTT-CCEE---EEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred E--CCC-EEEEEeCCCeEEEEECCC-CCEE---EEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 9 555 999999999999999987 4444 5678899999998885 34 8999999999999999987 677777
Q ss_pred ec---CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KA---HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~---h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. |...|++++|+ +.+++.+.. ++.|++|+..+++
T Consensus 356 ~~~~~~~~~v~~~~~~--~~~l~s~~~----dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQFN--KNFVITSSD----DGTVKLWDLKTGE 393 (445)
T ss_dssp CSTTSCSSCEEEEEEC--SSEEEEEET----TSEEEEEETTTCC
T ss_pred ccCCCCCCCEEEEEEC--CCEEEEEeC----CCeEEEEECCCCc
Confidence 65 88999999996 567777765 8999999998875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=189.88 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=133.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
....+|.+.|++++|+|++ .+||+|+.||.|+||+... ......+ .|...|.+|+|+
T Consensus 11 ~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~---------------------~~~~~~~-~~~~~V~~l~fs 67 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQ---------------------VEVVIKL-EDRSAIKEMRFV 67 (902)
T ss_dssp EEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTT---------------------CEEEEEC-SSCCCEEEEEEE
T ss_pred ccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCC---------------------cEEEEEc-CCCCCEEEEEEc
Confidence 5567999999999999999 8999999999999999765 2333333 477899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-----
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----- 313 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----- 313 (359)
| +. +|++++.|++|++||+++ ++.+ ..+. |...|++++|+|++. +|++|+.||.|++||+++. ...
T Consensus 68 p-g~-~L~S~s~D~~v~lWd~~~-~~~~---~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~-~~~~~~i~ 138 (902)
T 2oaj_A 68 K-GI-YLVVINAKDTVYVLSLYS-QKVL---TTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRD-QLSSFKLD 138 (902)
T ss_dssp T-TT-EEEEEETTCEEEEEETTT-CSEE---EEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTT-EEEEEEEC
T ss_pred C-CC-EEEEEECcCeEEEEECCC-CcEE---EEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCC-ccccceec
Confidence 9 76 899999999999999987 4443 3443 678999999999999 9999999999999999986 322
Q ss_pred ------EEeecCCCCEEEEEEcCCC-CeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 ------TSFKAHNADVNVISWNRCW-LAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ------~~~~~h~~~V~~i~~s~~~-~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+|...|++|+|+|++ ..++.+.. ++.+ +||.+++.
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~----dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE----YVTL-TYSLVENE 184 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS----SCEE-EEETTTTE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeC----CCcE-EEECCCCc
Confidence 1235689999999999975 56666554 8889 99988764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=174.71 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=127.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-----ceEEEEe
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-----EGYAIDW 237 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~ 237 (359)
+|...|.+++|+|+| .++|+++.||.|+|||... .+..+. |.. .+.+++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-----------------------~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-----------------------MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-----------------------EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-----------------------eeeecc-CCCccccccEEEEEE
Confidence 668899999999999 8999999999999999543 334455 554 5999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcce----ecCccc----cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWN----VDPNPF----IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~----~~~~~~----~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
||++. +||+|+.||+|+||++.. +... .....+ .+|...|.+++|+|++ +++++.|++|++||+...
T Consensus 138 SPDG~-~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 138 NPIES-SIVVGNEDGELQFFSIRK-NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp CSSSS-CEEEEETTSEEEEEECCC-CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSS
T ss_pred cCCCC-EEEEEcCCCEEEEEECCC-CccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCC
Confidence 99998 999999999999999987 3320 001333 6788999999999998 788899999999999886
Q ss_pred CC--ceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KS--ALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~--~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.. ...++ .+|...|.+++|+ +..++.++ ++.|++|+...+..
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-----~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-----PGYVHKIDLKNYSI 257 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-----SSEEEEEETTTTEE
T ss_pred ccccceeeecccccCcEEEEEEE--CCEEEEEe-----CCeEEEEECCCCeE
Confidence 21 23456 4788999999999 67776663 57899999887653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=168.23 Aligned_cols=160 Identities=11% Similarity=0.087 Sum_probs=132.5
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|.+.|++++|+|++ .+|++++.||.|+||++.... ...+...+.+|...+.+++|+|++
T Consensus 8 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQA------------------KNVDLLQSLRYKHPLLCCNFIDNT 68 (342)
T ss_dssp SCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTT------------------TEEEEEEEEECSSCEEEEEEEESS
T ss_pred cCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCC------------------ccccceeeeecCCceEEEEECCCC
Confidence 4799999999999998 789999999999999998621 011245566899999999999986
Q ss_pred CCeEEEEcCCCcEEEEec-CCCCcceecCccccC--CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC---------C
Q 018235 242 TGRLVTGDCNSCIYLWEP-ASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV---------G 309 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~-~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---------~ 309 (359)
..+|++|+.||.|++|++ .. +.. ..+.+ |...|.+++|+| +. +|++++.|+.|++||+++ .
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~-~~~----~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGS-PSF----QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSS-SSE----EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CcEEEEEcCCCeEEEEEeccC-Cce----EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccC
Confidence 327999999999999999 76 332 45677 999999999999 66 999999999999999987 5
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.++..+. |...|.+++|++++ ++.+.. ++.|++|+.+.
T Consensus 142 -~~~~~~~-~~~~v~~~~~~~~~--l~~~~~----d~~i~i~d~~~ 179 (342)
T 1yfq_A 142 -LNSNNTK-VKNKIFTMDTNSSR--LIVGMN----NSQVQWFRLPL 179 (342)
T ss_dssp -SCSSSSS-SCCCEEEEEECSSE--EEEEES----TTEEEEEESSC
T ss_pred -CeeeEEe-eCCceEEEEecCCc--EEEEeC----CCeEEEEECCc
Confidence 4555555 88999999999988 555554 78899999987
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=172.00 Aligned_cols=175 Identities=11% Similarity=0.097 Sum_probs=131.2
Q ss_pred EecCCCceeeEEEeCCCCcEEE----EEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC---cEEecCCCCceE
Q 018235 161 KVAHQGCVNRIRAMTQNPHICA----SWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP---LVKFGGHKDEGY 233 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~la----t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~ 233 (359)
.+.|.+.|++++|+|++ .+|| +++.|+.|+|||+........ ...++ +..+.+|...|.
T Consensus 88 ~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~h~~~V~ 153 (434)
T 2oit_A 88 LVPMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAK-------------QQKRPFAYHKLLKDAGGMVI 153 (434)
T ss_dssp EECCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTC-------------SSCCCSEEEECCCSGGGSEE
T ss_pred cccCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCc-------------CCcceeeeeeccCCCCCceE
Confidence 45788999999999999 5666 888999999999865210000 00122 345677999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+|....+|++|+.||+|++||+++. ... ....+|...|.+++|+|++. +|++|+.||.|++||++ + ...
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~---~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~-~~~ 226 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTET-VKV---CATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-L-QEK 226 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSS-EEE---EEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-C-CEE
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCC-cce---eeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-C-ccc
Confidence 99999985449999999999999999874 322 34556889999999999998 99999999999999999 3 444
Q ss_pred EEeecC-------CCCEEEEEEcCCCCeEEEEeeec---ccceEEEEEeCcCC
Q 018235 314 TSFKAH-------NADVNVISWNRCWLAVCWHLEVM---MEHFLFMILDCSRG 356 (359)
Q Consensus 314 ~~~~~h-------~~~V~~i~~s~~~~~l~~~~~~~---~~d~~i~iwd~~~g 356 (359)
..+..| ...|.+++|++++.+++...... .....+++|+.++.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 444333 23799999999888776544321 11245889998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-18 Score=156.93 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=129.3
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.+...+++++|+|++..++++++.++.|++||+.. .+.+..+..| ..+.+++|+|++
T Consensus 70 ~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~---------------------~~~~~~~~~~-~~~~~~~~s~dg 127 (391)
T 1l0q_A 70 VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---------------------NTVAGTVKTG-KSPLGLALSPDG 127 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEECS-SSEEEEEECTTS
T ss_pred EECCCCccceEECCCCCEEEEEECCCCEEEEEECCC---------------------CeEEEEEeCC-CCcceEEECCCC
Confidence 344559999999999966777888889999999987 4455555544 468999999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
..++++++.++.|++||+.+ ++.. ..+..| ..+.+++|+|++..++++++.++.|++||++++ ..+..+. +..
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~-~~~~---~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~ 200 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVT-KAVI---NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-VEA 200 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT-TEEE---EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSS
T ss_pred CEEEEEeCCCCEEEEEECCC-CcEE---EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-cCC
Confidence 83448999999999999977 4443 344444 567999999999856688899999999999986 5554444 566
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.+++|+|++.+++.... ...++.|.+||..++.
T Consensus 201 ~~~~~~~~~~g~~l~~~~~-~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNV-DKYFNTVSMIDTGTNK 235 (391)
T ss_dssp EEEEEEECTTSSEEEEEEE-CSSCCEEEEEETTTTE
T ss_pred CccceEECCCCCEEEEEec-CcCCCcEEEEECCCCe
Confidence 7999999999998887763 1127889999998765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=154.02 Aligned_cols=164 Identities=11% Similarity=0.012 Sum_probs=128.9
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.+...+.+++|+|++..++++++.++.|++||+.. .+.+..+..|. .+.+++|+|++
T Consensus 112 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~dg 169 (391)
T 1l0q_A 112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT---------------------KAVINTVSVGR-SPKGIAVTPDG 169 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEECCS-SEEEEEECTTS
T ss_pred EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---------------------CcEEEEEecCC-CcceEEECCCC
Confidence 345667899999999966668999999999999986 45556666554 56899999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCCCCceEEeec
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
..++++++.++.|++||+++ +... ..+ .+...+.+++|+|++. .|++++ .++.|++||++++ +.+..+..
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~-~~~~---~~~-~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~ 242 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVT-NSVI---DTV-KVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTN-KITARIPV 242 (391)
T ss_dssp SEEEEEETTTTEEEEEETTT-TEEE---EEE-ECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTT-EEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCC-CeEE---EEE-ecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCCC-eEEEEEec
Confidence 83447888999999999987 4433 223 3567899999999998 666665 7999999999987 66667766
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|. .+.+++|+|+++.++.... .++.|++||..++++
T Consensus 243 ~~-~~~~~~~s~dg~~l~~s~~---~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 243 GP-DPAGIAVTPDGKKVYVALS---FXNTVSVIDTATNTI 278 (391)
T ss_dssp CS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEE
T ss_pred CC-CccEEEEccCCCEEEEEcC---CCCEEEEEECCCCcE
Confidence 55 5899999999998866543 278999999987753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=159.37 Aligned_cols=164 Identities=11% Similarity=0.009 Sum_probs=132.0
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
..+|.+.|++++|+|++ .++++++.++.|++||+.. ...+..+..|...+.+++|+|+
T Consensus 165 ~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 165 YKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKT---------------------LAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp HHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTT---------------------CCEEEEEECSSSSEEEEEEETT
T ss_pred ccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCC---------------------ceEEEEEcCCCCCeeEEEEcCC
Confidence 34799999999999988 8999999999999999986 5667788889999999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--------CCCcEEEEECCCCCCc
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--------VDGHIAIWDTRVGKSA 312 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--------~Dg~I~iwD~r~~~~~ 312 (359)
+..++++++.++.|++||+++ +... ..+.. ...+.+++|+|++. .+++++ .||.|++||++++ +.
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~-~~~~---~~~~~-~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~ 295 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKT-KLEI---RKTDK-IGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKE-KL 295 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTT-TEEE---EECCC-CSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTT-EE
T ss_pred CCEEEEEecCCCcEEEEECCC-CcEE---EEecC-CCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCC-cE
Confidence 983446777899999999987 4433 33333 45699999999998 777766 5889999999986 44
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.. ..|...+.+++|+|++..+++.... ++.+++|+..++.
T Consensus 296 ~~~-~~~~~~~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~~ 336 (433)
T 3bws_A 296 IDT-IGPPGNKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKK 336 (433)
T ss_dssp EEE-EEEEECEEEEEECSSTTEEEEEETT---TTEEEEEETTTTE
T ss_pred Eee-ccCCCCcceEEECCCCCEEEEEecC---CCEEEEEECCCCc
Confidence 433 3466689999999999877665432 7899999998765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=167.29 Aligned_cols=176 Identities=12% Similarity=0.119 Sum_probs=129.6
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...++.+++++.+ .++++++.+| |+||+............ .........+...+ .|...+++++|+|++. +
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~-~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGD-----DPNKIVDKVQGLLV-PMKFPIHHLALSCDNL-T 106 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTC-----CTTCEEECCCCEEE-CCSSCEEEEEECTTSC-E
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhccccc-----CcccccccCccccc-cCCCcccEEEEcCCCC-E
Confidence 3468999999988 6888888888 99988643111000000 00000001222223 4567899999999998 8
Q ss_pred EE----EEcCCCcEEEEecCCC-----C--cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 245 LV----TGDCNSCIYLWEPASD-----A--TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 245 l~----sgs~dg~I~lwd~~~~-----~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
|+ +|+.|+.|+|||+++. . +.......+.+|...|.+++|+|+...+||+|+.||+|+|||++++ ..+
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~ 185 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKV 185 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cce
Confidence 88 8999999999998652 0 1111124567799999999999995559999999999999999987 555
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.....|...|++++|+|+|.+|+.+.. ++.|++|+.+
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~----dg~v~iwd~~ 222 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQ----NGTVVQYLPT 222 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEET----TSCEEEECTT
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcC----CCcEEEEccC
Confidence 566778999999999999999998876 8899999987
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-17 Score=153.90 Aligned_cols=172 Identities=9% Similarity=-0.016 Sum_probs=134.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....+..|...+++++|+|++..++++++.++.|++||+.. ...+..+..+ ..+.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~-~~~~~~~ 260 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---------------------KLEIRKTDKI-GLPRGLL 260 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---------------------TEEEEECCCC-SEEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---------------------CcEEEEecCC-CCceEEE
Confidence 33455589999999999999966667877899999999976 3445555544 4689999
Q ss_pred eCCCCCCeEEEEc--------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 237 WNPITTGRLVTGD--------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 237 ~sp~~~~~l~sgs--------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
|+|++. +|++++ .||.|++||+++ ++.. ....|...+.+++|+|++..++++++.++.|++||+++
T Consensus 261 ~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 261 LSKDGK-ELYIAQFSASNQESGGGRLGIYSMDK-EKLI----DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp ECTTSS-EEEEEEEESCTTCSCCEEEEEEETTT-TEEE----EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred EcCCCC-EEEEEECCCCccccCCCeEEEEECCC-CcEE----eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 999998 888777 588999999987 4433 22345668899999999986788889999999999998
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCCeEEEEeeec-----------ccceEEEEEeCcCCcc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWLAVCWHLEVM-----------MEHFLFMILDCSRGEI 358 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~-----------~~d~~i~iwd~~~g~v 358 (359)
+ +.+..+. +...+.+++|+|++.+++.+.... ..++.|.+|+..++++
T Consensus 335 ~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 335 K-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp T-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred C-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 6 5555554 778899999999999887776421 1246899999987753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-16 Score=146.59 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=129.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCC---cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG---HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
..+..|.+.|.+++|+|++ ..||+++.++ .|++||+.. .+. ..+..|...+.++
T Consensus 172 ~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t---------------------g~~-~~l~~~~~~~~~~ 228 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN---------------------GAV-RQVASFPRHNGAP 228 (415)
T ss_dssp EEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT---------------------CCE-EEEECCSSCEEEE
T ss_pred EEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC---------------------CcE-EEeecCCCcccCE
Confidence 3455789999999999999 6777777765 999999987 333 3566788889999
Q ss_pred EeCCCCCCeEE-EEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-CC--cEEEEECCCC
Q 018235 236 DWNPITTGRLV-TGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVG 309 (359)
Q Consensus 236 ~~sp~~~~~l~-sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~ 309 (359)
+|+|++. +|+ +++.++. |++||+.+ +.. ..+..|...+.+++|+|++. .|++++. ++ .|.+||+.++
T Consensus 229 ~~spdg~-~la~~~~~~g~~~i~~~d~~~-~~~----~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 229 AFSPDGS-KLAFALSKTGSLNLYVMDLAS-GQI----RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp EECTTSS-EEEEEECTTSSCEEEEEETTT-CCE----EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSS
T ss_pred EEcCCCC-EEEEEEecCCCceEEEEECCC-CCE----EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCC
Confidence 9999998 666 7776665 99999976 332 35667888999999999999 6776665 55 5777798875
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
....+..|...+.+++|+|+|++|++.... .....|.+|+..++.+
T Consensus 302 --~~~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 302 --APQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGV 347 (415)
T ss_dssp --CCEECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCE
T ss_pred --CEEEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCE
Confidence 344566677789999999999999887642 1246899999988754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=149.86 Aligned_cols=161 Identities=10% Similarity=0.019 Sum_probs=112.7
Q ss_pred CCCceeeEEEeCC----CCcEEEEEeC--------------------CCcEEEEECCCCccccccccccccCCCCCCCCC
Q 018235 164 HQGCVNRIRAMTQ----NPHICASWAD--------------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (359)
Q Consensus 164 H~~~V~~i~~~p~----~~~~lat~s~--------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (359)
|.+.|+.+.++|+ + .++++++. ++.|++|++.. .+
T Consensus 110 ~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~--------------------dG 168 (356)
T 2w18_A 110 EIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE--------------------DG 168 (356)
T ss_dssp SEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT--------------------TS
T ss_pred cccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC--------------------CC
Confidence 4467888888888 6 55665552 55555555543 25
Q ss_pred CCcEEecCCCCceEEEEeCC---CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC---CCeEEEEecCCCCCEE-
Q 018235 220 SPLVKFGGHKDEGYAIDWNP---ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVF- 292 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp---~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~l- 292 (359)
+.+..+.+|...+..++|++ ++. +|+||+.|++|+|||+++ ++.+ +.+.+|. ..|.+++|+|++. ++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~T-Gk~l---~tL~g~~~~v~~v~~vafSpdG~-~lv 242 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKT-GQLL---KKMHIDDSYQASVCHKAYSEMGL-LFI 242 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTT-CCEE---EEEECCC---CCCEEEEEEETTE-EEE
T ss_pred ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCC-CcEE---EEEcCCCcceeeeEEEEECCCCC-EEE
Confidence 56677888999999999999 556 999999999999999988 5554 5566543 4678889999998 54
Q ss_pred -----------EEEeCCCcEEEEECCCCCCceEEe-----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 293 -----------ASCSVDGHIAIWDTRVGKSALTSF-----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 293 -----------as~s~Dg~I~iwD~r~~~~~~~~~-----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++|+.|++|++||..++ ..+..+ .+|...+.+.+++ +.+++.+.. |++|+|||..+|
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~----DgTIkIWDl~tG 315 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT----SGTIAIWDLLLG 315 (356)
T ss_dssp EEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET----TSCEEEEETTTC
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcC----CCcEEEEECCCC
Confidence 67889999999999987 544433 3565555444444 666666655 889999999988
Q ss_pred cc
Q 018235 357 EI 358 (359)
Q Consensus 357 ~v 358 (359)
+.
T Consensus 316 k~ 317 (356)
T 2w18_A 316 QC 317 (356)
T ss_dssp SE
T ss_pred cE
Confidence 63
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-16 Score=145.51 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=124.0
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.+..|.+.+.+++|+|++..++++++.+|. |++||+.. .. ...+..|...+.+++|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---------------------~~-~~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQ-IRQVTDGRSNNTEPTW 274 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---------------------CC-EEECCCCSSCEEEEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC---------------------CC-EEeCcCCCCcccceEE
Confidence 456788999999999999555557777665 88999876 22 3567788889999999
Q ss_pred CCCCCCeEEEEcC-CC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCCC
Q 018235 238 NPITTGRLVTGDC-NS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKS 311 (359)
Q Consensus 238 sp~~~~~l~sgs~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~ 311 (359)
+|++. +|++++. ++ .|++||+.. +.. ..+..|...+.+++|+|++. .|++++.+ +.|++||+.++ .
T Consensus 275 spdg~-~l~~~s~~~g~~~i~~~d~~~-~~~----~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~-~ 346 (415)
T 2hqs_A 275 FPDSQ-NLAFTSDQAGRPQVYKVNING-GAP----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG-G 346 (415)
T ss_dssp CTTSS-EEEEEECTTSSCEEEEEETTS-SCC----EECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTC-C
T ss_pred CCCCC-EEEEEECCCCCcEEEEEECCC-CCE----EEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCCC-C
Confidence 99998 7777665 45 577778866 332 33455677899999999999 77666653 58999999986 3
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...+..|. .+.+++|+|+|+.|++.... .....|.+|+...+.
T Consensus 347 -~~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 347 -VQVLSSTF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRF 389 (415)
T ss_dssp -EEECCCSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCC
T ss_pred -EEEecCCC-CcCCeEEcCCCCEEEEEEcC-CCccEEEEEECCCCc
Confidence 34555554 79999999999998887652 112378999977543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-16 Score=136.64 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=121.6
Q ss_pred CCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...|.+++|+|++ .++++++ .++.+.||.+... ......+..+. .+..++|+|++.
T Consensus 84 ~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~-~~~~~~~spdg~ 141 (297)
T 2ojh_A 84 TICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPST--------------------GGTPRLMTKNL-PSYWHGWSPDGK 141 (297)
T ss_dssp CCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETT--------------------CCCCEECCSSS-SEEEEEECTTSS
T ss_pred cccccceEECCCC-CEEEEEEeCCCCcceEEEEECC--------------------CCceEEeecCC-CccceEECCCCC
Confidence 4789999999999 6677766 4456666666431 12234444443 488999999998
Q ss_pred CeEE-EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE-EeCCCcEEEEECCCCCCceEEeecCC
Q 018235 243 GRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS-CSVDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 243 ~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las-~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+|+ +++.++.++||++....... ..+..|...+.+++|+|++. .|+. +..++.++||+++.....+..+..|.
T Consensus 142 -~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 142 -SFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp -EEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred -EEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCC-EEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 555 88889999999875422222 34666788999999999999 5554 44699999999874335667777788
Q ss_pred CCEEEEEEcCCCCeEEEEeeecc-------cceEEEEEeCcCCcc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMM-------EHFLFMILDCSRGEI 358 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~-------~d~~i~iwd~~~g~v 358 (359)
..+.+++|+|++.+|++...... ....|.+|+..+++.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 88999999999999887765211 236799999887653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-15 Score=130.58 Aligned_cols=165 Identities=9% Similarity=-0.058 Sum_probs=118.3
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWN 238 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 238 (359)
.+..|.+.|.+++|+|++ .++++++ ++.|++||+... ..+...+.+| ...+.+++|+
T Consensus 36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGD--------------------PSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSC--------------------CSCEECCCTTCCCBCSCCEEC
T ss_pred eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCC--------------------CCceEeccccccccccceEEC
Confidence 456789999999999999 6777765 789999998751 2333344455 3578899999
Q ss_pred CCCCCeEEEEc--CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 239 PITTGRLVTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 239 p~~~~~l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|++. +|++++ .++.+.||.+....... ..+..+ ..+..++|+|++..++++++.++.++||+++........+
T Consensus 94 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDGA-LYAISDKVEFGKSAIYLLPSTGGTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTSS-EEEEEECTTTSSCEEEEEETTCCCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCCC-EEEEEEeCCCCcceEEEEECCCCce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 9998 888887 33555666553322211 233333 3489999999999555588899999999975432455667
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|...+.+++|+|++..+++.... ++.+++|...
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~ 203 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVR 203 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEE
T ss_pred ccCCCccccceECCCCCEEEEEecC---CCCccEEEEC
Confidence 7788899999999999988876532 4556777654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-14 Score=126.68 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=121.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCC-C--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADT-G--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d-g--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+...+.+++|+|++ .++++...+ + .|.+||+.. ...+..+..+ ....++
T Consensus 77 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLK---------------------NKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTT---------------------TEEEEEEECC-TTEEEE
T ss_pred EecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCC---------------------CCeEEEEECC-CCccce
Confidence 4445566666669999999 555554544 3 899999976 3444455443 356899
Q ss_pred EeCCCCCCeEEEEcCCCc-EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc--
Q 018235 236 DWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA-- 312 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~-- 312 (359)
+|+|++..+++++..++. |.+|++...+...............+..++|+|++..+++++..++.|++||+.++ ..
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~ 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENIT 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccc
Confidence 999999845556666688 99999976443221001122344568999999999866777778999999999987 55
Q ss_pred -eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 -LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 -~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+.. ...+..++|+|+|++++.... .++.|.+|+..++++
T Consensus 213 ~~~~~~~-~~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 213 LLNAVGT-NNLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEEEC-SSCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEE
T ss_pred eeeeccC-CCCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCce
Confidence 555553 456788999999998776654 267799999988764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=126.89 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=120.3
Q ss_pred eeeEEEeCCCCcEEEEE-eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASW-ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
+..+.|+|++..++++. +.++.|.+||+.. .+.+..+..+...+.+++|+|++. +|+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~s~dg~-~l~ 200 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGN---------------------IKLKTAIQNTGKMSTGLALDSEGK-RLY 200 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTT---------------------TEEEEEECCCCTTCCCCEEETTTT-EEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCC---------------------CceEEEecCCCCccceEEECCCCC-EEE
Confidence 68899999995555555 4688999999986 445556654555678999999998 888
Q ss_pred EEcCCCcEEEEecCCCCcceecCc-cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
+++.++.|.+||+.+ ++...... ...++...+.+++|+|++..+++++..++.|.+||+.++ +.+..+..... ..
T Consensus 201 ~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 201 TTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPES--LA 276 (353)
T ss_dssp EECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSSC--CC
T ss_pred EEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCC--ce
Confidence 888899999999977 44331001 112356678899999999956666667799999999987 55666654332 56
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++|+|++..++..... ++.|.+||..++++
T Consensus 277 ~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQ---AGKVSVIDAKSYKV 306 (353)
T ss_dssp EEEETTTTEEEEEETT---TTEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEECC---CCeEEEEECCCCeE
Confidence 8999999977666532 67899999987764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=147.38 Aligned_cols=162 Identities=10% Similarity=0.070 Sum_probs=116.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCC---------CcEEEEECCCCccccccccccccCCCCCCCCCCC--cEEecCCCCceEEE
Q 018235 167 CVNRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP--LVKFGGHKDEGYAI 235 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l 235 (359)
.|..++|+|++ ..||+++.+ +.|++||+.. ... +....+|...+..+
T Consensus 62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~---------------------~~~~~l~~~~~~~~~~~~~ 119 (723)
T 1xfd_A 62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPH---------------------GDPQSLDPPEVSNAKLQYA 119 (723)
T ss_dssp TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSS---------------------CCCEECCCTTCCSCCCSBC
T ss_pred ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCC---------------------CceEeccCCcccccccccc
Confidence 49999999999 667776653 7889999987 222 11223455558899
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC------------------CeEEEEecCCCCCEEEEEeC
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA------------------SVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------------~V~~v~~sp~~~~~las~s~ 297 (359)
+|||++. .||+++. +.|++|++.. +... +....+.. .+.+++|||++. .|++++.
T Consensus 120 ~~SPdG~-~la~~~~-~~i~~~~~~~-g~~~---~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~ 192 (723)
T 1xfd_A 120 GWGPKGQ-QLIFIFE-NNIYYCAHVG-KQAI---RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAI 192 (723)
T ss_dssp CBCSSTT-CEEEEET-TEEEEESSSS-SCCE---EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEE
T ss_pred EECCCCC-EEEEEEC-CeEEEEECCC-CceE---EEecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEE
Confidence 9999998 8888875 7999999976 3322 12222222 237899999999 7877765
Q ss_pred CC----------------------------------cEEEEECCCCCCceEEeecC------CCCEEEEEEcCCCCeEEE
Q 018235 298 DG----------------------------------HIAIWDTRVGKSALTSFKAH------NADVNVISWNRCWLAVCW 337 (359)
Q Consensus 298 Dg----------------------------------~I~iwD~r~~~~~~~~~~~h------~~~V~~i~~s~~~~~l~~ 337 (359)
|+ .|++||+.++ .....+..+ ...+..++|+|+|++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 43 7999999886 444555443 567899999999998866
Q ss_pred EeeecccceEEEEEeCcCCcc
Q 018235 338 HLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 338 ~~~~~~~d~~i~iwd~~~g~v 358 (359)
.......+..|.+||..++.+
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~ 292 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVC 292 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCE
T ss_pred EEcCCCCeEEEEEEeCCCCcc
Confidence 544333457899999887753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=135.00 Aligned_cols=159 Identities=9% Similarity=0.085 Sum_probs=122.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEEC--CCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC----CC
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP----IT 241 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp----~~ 241 (359)
+..++|+|++ .++++++.++.|.+||+ .. .+.+.++. +......++|+| ++
T Consensus 181 ~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t---------------------~~~~~~i~-~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASG-RYLLVIGRDARIDMIDLWAKE---------------------PTKVAEIK-IGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTS-CEEEEEETTSEEEEEETTSSS---------------------CEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred cceEEECCCC-CEEEEECCCCeEEEEECcCCC---------------------CcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence 8899999999 78888888899999999 44 34555665 345678999999 99
Q ss_pred CCeEEEEc-CCCcEEEEecCCCCcceecCccccC----------C-CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 242 TGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIG----------H-SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 242 ~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~----------h-~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
. +|++++ .+++|.+||..+ .+.+ ..+.. | ...+..+.++|++..+++++..++.|.+||+...
T Consensus 238 ~-~l~v~~~~~~~v~v~D~~t-~~~~---~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~ 312 (543)
T 1nir_A 238 R-YTIAGAYWPPQFAIMDGET-LEPK---QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312 (543)
T ss_dssp T-EEEEEEEESSEEEEEETTT-CCEE---EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred C-EEEEEEccCCeEEEEeccc-cccc---eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence 8 777776 489999999877 4433 22221 2 2378999999998878889999999999999886
Q ss_pred CCceE-EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALT-SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~-~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+. ....+...+..+.|+|++++++..... ++.|.+||..++++
T Consensus 313 -~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~l 358 (543)
T 1nir_A 313 -DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRRL 358 (543)
T ss_dssp -SSCEEEEEECCSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTEE
T ss_pred -CcceeEEeccCcCccCceECCCCCEEEEEecC---CCeEEEEECCCCeE
Confidence 3332 223466678899999999988766542 67899999988764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-13 Score=121.97 Aligned_cols=165 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC-cEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~sp~ 240 (359)
..+...+ .++|+|++..++++...++.|.+||+.. ... ...+..+.....+++|+|+
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~d 94 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL---------------------EPPKVVAIQEGQSSMADVDITPD 94 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS---------------------SSCEEEEEEECSSCCCCEEECTT
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CceeEEecccCCCCccceEECCC
Confidence 3455666 9999999965777777799999999987 344 5566666666666999999
Q ss_pred CCCeEEEEcCCC---cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCce---
Q 018235 241 TTGRLVTGDCNS---CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSAL--- 313 (359)
Q Consensus 241 ~~~~l~sgs~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~--- 313 (359)
+. +|+++..++ .|.+||+.+ +... ..+. +.....+++|+|++..+++++..++. |.+|++... ..+
T Consensus 95 g~-~l~~~~~~~~~~~i~v~d~~~-~~~~---~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~-g~~~~~ 167 (331)
T 3u4y_A 95 DQ-FAVTVTGLNHPFNMQSYSFLK-NKFI---STIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD-GVLFDT 167 (331)
T ss_dssp SS-EEEECCCSSSSCEEEEEETTT-TEEE---EEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT-CCEEEE
T ss_pred CC-EEEEecCCCCcccEEEEECCC-CCeE---EEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCC-CcEeec
Confidence 98 777555553 899999976 4433 2333 34567899999999878888888888 999999865 222
Q ss_pred -EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 -TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 -~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.........+..++|+|++++++..... ++.|.+|+..++++
T Consensus 168 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 168 GQEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPEN 210 (331)
T ss_dssp EEEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTS
T ss_pred CCccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcc
Confidence 1222345568999999999977665532 67899999987764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-14 Score=141.56 Aligned_cols=161 Identities=8% Similarity=0.080 Sum_probs=118.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC--CcEEecCCCCceEEEEeCCCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS--PLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
..|..++|+|++ ..|++++. +.|++||+.. .. ....+..|...+.+++|||++.
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~---------------------~~~~~~~~l~~~~~~~~~~~~SPDG~- 164 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQ---------------------EGKAAVRQLTHGEGFATDAKLSPKGG- 164 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSS---------------------CSTTSCCBCCCSSSCEEEEEECTTSS-
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCC---------------------CCcceEEEcccCCcccccccCCCCCC-
Confidence 458899999999 66666665 9999999986 21 2334667777899999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCC----------------eEEEEecCCCCCEEEEEeCCC--------
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS----------------VEDLQWSPTEPDVFASCSVDG-------- 299 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------------V~~v~~sp~~~~~las~s~Dg-------- 299 (359)
+|++++ ++.|++||+.. +... .....+... +..++|||++. .|++++.|+
T Consensus 165 ~la~~~-~~~i~~~d~~~-g~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 165 FVSFIR-GRNLWVIDLAS-GRQM---QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKR 238 (741)
T ss_dssp EEEEEE-TTEEEEEETTT-TEEE---ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEE
T ss_pred EEEEEe-CCcEEEEecCC-CCEE---EeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEec
Confidence 888887 56999999976 4332 112222222 47799999999 677776655
Q ss_pred -------------------------cEEEEECCC-CCCceEEee--cCCCCEEEEEEcCCCCeEEEEeee-cccceEEEE
Q 018235 300 -------------------------HIAIWDTRV-GKSALTSFK--AHNADVNVISWNRCWLAVCWHLEV-MMEHFLFMI 350 (359)
Q Consensus 300 -------------------------~I~iwD~r~-~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~-~~~d~~i~i 350 (359)
.|++||+.+ + ....... .|...+..++| |+|+.|++.... ...+..|.+
T Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~ 316 (741)
T 2ecf_A 239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA-QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVE 316 (741)
T ss_dssp EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC-CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEE
T ss_pred CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC-ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEE
Confidence 789999988 6 4332222 47778999999 999998876542 234678999
Q ss_pred EeCcCCcc
Q 018235 351 LDCSRGEI 358 (359)
Q Consensus 351 wd~~~g~v 358 (359)
||..++.+
T Consensus 317 ~d~~~g~~ 324 (741)
T 2ecf_A 317 VTLASNQQ 324 (741)
T ss_dssp EETTTCCE
T ss_pred EECCCCce
Confidence 99887753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=125.35 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=114.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...+.+..++|+|++..+++++..++.|.+||+... . ....+..+..+. .+.+++|+|++.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~-----------------~~~~~~~~~~~~-~~~~~~~s~dg~ 141 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-L-----------------PVGVVDVVEGLD-GCHSANISPDNR 141 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-E-----------------EEEEEEEECCCT-TBCCCEECTTSS
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-c-----------------cccccccccCCC-CceEEEECCCCC
Confidence 334588999999999556666667899999999420 0 023334444433 588999999998
Q ss_pred CeEEEEc-CCCcEEEEecCCCCcceecCc--cccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc---eEE
Q 018235 243 GRLVTGD-CNSCIYLWEPASDATWNVDPN--PFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTS 315 (359)
Q Consensus 243 ~~l~sgs-~dg~I~lwd~~~~~~~~~~~~--~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~---~~~ 315 (359)
+|++++ .++.|++|++...+.... .. .+.. ....+..++|+|++..+++++..++.|++||+...... ...
T Consensus 142 -~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 142 -TLWVPALKQDRICLFTVSDDGHLVA-QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp -EEEEEEGGGTEEEEEEECTTSCEEE-EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred -EEEEecCCCCEEEEEEecCCCceee-ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 666665 899999999976333221 01 1222 34578899999999855566668999999999642111 222
Q ss_pred ee----cC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 316 FK----AH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 316 ~~----~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+. .+ ...+..++|+|+++++++... .++.|.+|+..
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~---~~~~i~v~d~~ 261 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDR---TASLITVFSVS 261 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEET---TTTEEEEEEEC
T ss_pred ccccCccccccCCccceEECCCCCEEEEEec---CCCEEEEEEEc
Confidence 22 11 235678999999998876653 27889999987
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=124.65 Aligned_cols=172 Identities=6% Similarity=-0.075 Sum_probs=115.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|.+.+..++|+|++..+++++..++.|.+|++..... ....+..+..+. .+.+++|+
T Consensus 31 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 31 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-----------------ALTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-----------------CEEEEEEEECSS-CCSEEEEC
T ss_pred eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-----------------ceeeccccccCC-CCcEEEEc
Confidence 445678899999999999944444444459999999973100 012233444444 67899999
Q ss_pred CCCCCeEE-EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE---
Q 018235 239 PITTGRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT--- 314 (359)
Q Consensus 239 p~~~~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~--- 314 (359)
|++. +|+ ++..++.|.+||+.. +........+. ....+.+++|+|++..+++++..++.|++||+........
T Consensus 93 ~dg~-~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 93 HQGQ-FVFVGSYNAGNVSVTRLED-GLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEET-TEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred CCCC-EEEEEecCCCeEEEEECCC-Ccccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 9998 554 455588999999952 22111112333 3346889999999984444444899999999987313221
Q ss_pred -Eeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 -SFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 -~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+.. ....+..++|+|++.++++... .++.+.+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~ 208 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELK 208 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESS
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEec
Confidence 2222 3457899999999997766643 26789999984
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-13 Score=120.72 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=124.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC---------ceE
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---------EGY 233 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~ 233 (359)
.+...+..+.|+|++..++++...++.|.+||... .+.+..+..+.. ...
T Consensus 86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT---------------------GEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT---------------------CCEEEEEESCCCCCCSSCCCCEEE
T ss_pred ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC---------------------CeeEEEEecCCCccccccCCCCCc
Confidence 34556889999999966788888889999999986 344444444332 268
Q ss_pred EEEeCCCCCCeEEEEc--CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
++.|+|++. ++++++ .++.|.+||+.+ ++.. ..+..+...+.+++|+|++. .+++++.++.|.+||+.++ .
T Consensus 145 ~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~-~~~~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~-~ 217 (353)
T 3vgz_A 145 ELVADDATN-TVYISGIGKESVIWVVDGGN-IKLK---TAIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADN-K 217 (353)
T ss_dssp EEEEETTTT-EEEEEEESSSCEEEEEETTT-TEEE---EEECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTT-E
T ss_pred eEEECCCCC-EEEEEecCCCceEEEEcCCC-CceE---EEecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCC-e
Confidence 899999998 555554 578999999976 4433 33444555688899999999 7888888999999999987 5
Q ss_pred ceEEeec----CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSFKA----HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~~~----h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+..+.. +...+..++|+|++..++.... .++.|.+||..++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNGNI 265 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTCCE
T ss_pred EEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCCcE
Confidence 5555543 5567889999999998776654 257899999987764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-12 Score=118.24 Aligned_cols=170 Identities=8% Similarity=0.012 Sum_probs=117.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-CceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~ 244 (359)
..+.+++|+|++. ++++...++.|++|++..... ...+..+..+. .....++|+|++..+
T Consensus 141 ~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~------------------~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 141 SHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQ------------------LSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSC------------------EEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCc------------------EEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 3588999999995 888888899999999984100 01112222222 356789999999844
Q ss_pred EEEEcCCCcEEEEecCCC-CcceecCccccCCC------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--CceEE
Q 018235 245 LVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHS------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTS 315 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~~ 315 (359)
++++..++.|.+|++... +.... ...+.... ..+..++|+|++..+++++..++.|.+|++.... ..+..
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEE-eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 555677899999998741 22210 11122111 4588999999999566778889999999997321 23444
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE--eCcCCcc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL--DCSRGEI 358 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw--d~~~g~v 358 (359)
+..+...+..++|+|++++|+..... ++.+.+| +..+|.+
T Consensus 281 ~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 281 ISTEGDFPRDFDLDPTEAFVVVVNQN---TDNATLYARDLTSGKL 322 (347)
T ss_dssp EECSSSCCCEEEECTTSSEEEEEETT---TTEEEEEEECTTTCCE
T ss_pred EecCCCCcCeEEECCCCCEEEEEEcC---CCcEEEEEEeCCCCeE
Confidence 56666778999999999988777542 5789999 6666653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-12 Score=117.75 Aligned_cols=156 Identities=9% Similarity=-0.013 Sum_probs=109.9
Q ss_pred ceeeEEEeCCCCcEEEEEe------------CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 167 CVNRIRAMTQNPHICASWA------------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+..++|+|++ ..+++++ .++.|.+||+.. .+.+..+.. ...+.+
T Consensus 83 ~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~-~~~~~~ 139 (337)
T 1pby_B 83 SLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---------------------LSRRKAFEA-PRQITM 139 (337)
T ss_dssp CTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---------------------TEEEEEEEC-CSSCCC
T ss_pred cccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---------------------CcEEEEEeC-CCCcce
Confidence 67889999999 4555554 579999999976 333444433 335678
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCccee--cC----c--------------------------------------
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--DP----N-------------------------------------- 270 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~----~-------------------------------------- 270 (359)
++|+|++. +|+++ ++.|++||+.++ +... .. .
T Consensus 140 ~~~s~dg~-~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 140 LAWARDGS-KLYGL--GRDLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEECTTSS-CEEEE--SSSEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred eEECCCCC-EEEEe--CCeEEEEECCCC-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 89999998 67776 588999998753 2110 00 0
Q ss_pred -------------------cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCC
Q 018235 271 -------------------PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331 (359)
Q Consensus 271 -------------------~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~ 331 (359)
.+..+...+.+++|+|++. .++++ ++.|++||+.++ +.+..+.. ...+.+++|+|+
T Consensus 216 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~d 290 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTD 290 (337)
T ss_dssp GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTT
T ss_pred ccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCC
Confidence 0111223456799999998 66666 799999999986 55555543 345789999999
Q ss_pred CCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 332 WLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 332 ~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++.++.+.. ++.|.+|+..++++
T Consensus 291 g~~l~~~~~----~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 291 GSTVWLGGA----LGDLAAYDAETLEK 313 (337)
T ss_dssp SCEEEEESB----SSEEEEEETTTCCE
T ss_pred CCEEEEEcC----CCcEEEEECcCCcE
Confidence 998877643 78899999988763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=141.40 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=109.9
Q ss_pred ceeeEEEeCCCCcEEEEEeC---------CCcEEEEECCCCccccccccccccCCCCCCCCCCCc--EEecCCCCceEEE
Q 018235 167 CVNRIRAMTQNPHICASWAD---------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAI 235 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l 235 (359)
.|.+++|+|+| ..||+++. ++.|++||+... +.+ ..+ ...+..+
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g---------------------~~~~~~~l---~~~~~~~ 115 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNG---------------------EFVRGNEL---PRPIQYL 115 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------EECCSSCC---CSSBCCE
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCC---------------------ccccceec---Ccccccc
Confidence 38999999999 66666655 689999999862 110 111 2357889
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCe-----------------EEEEecCCCCCEEEEEeCC
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV-----------------EDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~v~~sp~~~~~las~s~D 298 (359)
+|||+|+ .||++. ++.|++|++..+ .... ....++...| .+++|||+|+ .||+++.|
T Consensus 116 ~~SPDG~-~la~~~-~~~i~~~~~~~g-~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d 189 (719)
T 1z68_A 116 CWSPVGS-KLAYVY-QNNIYLKQRPGD-PPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFN 189 (719)
T ss_dssp EECSSTT-CEEEEE-TTEEEEESSTTS-CCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEE
T ss_pred eECCCCC-EEEEEE-CCeEEEEeCCCC-CcEE--EecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEEC
Confidence 9999998 888886 789999999763 3221 1112332222 4899999999 88887755
Q ss_pred C----------------------------------cEEEEECCCCCCce--EE------eecCCCCEEEEEEcCCCCeEE
Q 018235 299 G----------------------------------HIAIWDTRVGKSAL--TS------FKAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 299 g----------------------------------~I~iwD~r~~~~~~--~~------~~~h~~~V~~i~~s~~~~~l~ 336 (359)
. .|++||+.++ ... .. +..|...+..++|+|++.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~ 268 (719)
T 1z68_A 190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCL 268 (719)
T ss_dssp CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEE
T ss_pred CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEccCCccCCCCcceEEEeEEeCCCeEEE
Confidence 2 7889999876 332 12 235777899999999987665
Q ss_pred EEeeecccceEEEEEe----CcCCcc
Q 018235 337 WHLEVMMEHFLFMILD----CSRGEI 358 (359)
Q Consensus 337 ~~~~~~~~d~~i~iwd----~~~g~v 358 (359)
...........|.+|+ ..+|..
T Consensus 269 ~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 269 QWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp EEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred EEeccccCeEEEEEEcccCCCCCCce
Confidence 5433222235688888 766553
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=137.18 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=107.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeC-CC-----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC---------
Q 018235 165 QGCVNRIRAMTQNPHICASWAD-TG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--------- 229 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~-dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 229 (359)
...|+.++|+|+| ..|++++. +| .|++||+... +....+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~ 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSG---------------------QTRLLVDSKVVLPGTETLS 93 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTC---------------------CEEEEECGGGTC-------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCC---------------------ceeEccchhhccccccccc
Confidence 4578999999999 67777777 88 8999999762 2222222111
Q ss_pred ---------------CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC--cceecCccccCCCCCeEEEEecCCCCCEE
Q 018235 230 ---------------DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 230 ---------------~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
..+.+++|||+++ +|++++. +.|++||+..+. .. ..+..|...+.+++|||++. .|
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~----~~l~~~~~~~~~~~~SPDG~-~l 166 (741)
T 2ecf_A 94 DEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAV----RQLTHGEGFATDAKLSPKGG-FV 166 (741)
T ss_dssp -------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTSC----CBCCCSSSCEEEEEECTTSS-EE
T ss_pred chhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcceE----EEcccCCcccccccCCCCCC-EE
Confidence 2377899999998 8888875 999999997631 22 45677888999999999999 88
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCC----------------EEEEEEcCCCCeEEEEee
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNAD----------------VNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~----------------V~~i~~s~~~~~l~~~~~ 340 (359)
|+++ ++.|++||+.++ ........+... +..++|+|+|+.|++...
T Consensus 167 a~~~-~~~i~~~d~~~g-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~ 228 (741)
T 2ecf_A 167 SFIR-GRNLWVIDLASG-RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI 228 (741)
T ss_dssp EEEE-TTEEEEEETTTT-EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred EEEe-CCcEEEEecCCC-CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence 8877 468999999886 333222333322 477999999999888754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=126.60 Aligned_cols=225 Identities=10% Similarity=0.048 Sum_probs=148.6
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
++....+|......+.++.+.-....+.+-||. .+|+++.. ++.|.++++..
T Consensus 158 d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg-----------~~l~v~~~-----d~~V~v~D~~~------------ 209 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-----------RYLLVIGR-----DARIDMIDLWA------------ 209 (543)
T ss_dssp GTEEEEEETTTCCEEEEEECSTTEEEEEECTTS-----------CEEEEEET-----TSEEEEEETTS------------
T ss_pred CCeEEEEECCCceEEEEEecCcccceEEECCCC-----------CEEEEECC-----CCeEEEEECcC------------
Confidence 344555665555555555544444566666764 35555552 37899998710
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeC----CCCcEEEEEe-CCCcEEEEECCCCcc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMT----QNPHICASWA-DTGHVQVWDLRSHLN 200 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p----~~~~~lat~s-~dg~V~iwd~~~~~~ 200 (359)
....+.. .+.+...+..++|+| ++ .++++++ .+++|.|||...
T Consensus 210 ---------------------------~t~~~~~-~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t--- 257 (543)
T 1nir_A 210 ---------------------------KEPTKVA-EIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGET--- 257 (543)
T ss_dssp ---------------------------SSCEEEE-EEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTT---
T ss_pred ---------------------------CCCcEEE-EEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccc---
Confidence 0223323 334667789999999 99 5555555 689999999876
Q ss_pred ccccccccccCCCCCCCCCCCcEEecC----------CCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecC
Q 018235 201 ALAESETIVGQGAPQVSNQSPLVKFGG----------HKD-EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269 (359)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~ 269 (359)
.+++.++.. |.. .+.++.++|++..++++...++.|.+||+.......
T Consensus 258 ------------------~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--- 316 (543)
T 1nir_A 258 ------------------LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--- 316 (543)
T ss_dssp ------------------CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---
T ss_pred ------------------cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---
Confidence 444554443 222 688999999888688889999999999997633222
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec----CCCCEEEEEEcCCCCeEEEEeeecccc
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA----HNADVNVISWNRCWLAVCWHLEVMMEH 345 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~----h~~~V~~i~~s~~~~~l~~~~~~~~~d 345 (359)
.....+...+.++.|+|++..+++++..+++|.+||+.++ +.+..+.. |......+ ++|++..+..... ..+
T Consensus 317 ~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~--~~d 392 (543)
T 1nir_A 317 VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH--LGD 392 (543)
T ss_dssp EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB--SSS
T ss_pred eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEecc--CCC
Confidence 1122356678899999999955666777999999999997 66666653 65433333 4677444333321 126
Q ss_pred eEEEEEeCcC
Q 018235 346 FLFMILDCSR 355 (359)
Q Consensus 346 ~~i~iwd~~~ 355 (359)
+.|.+|+..+
T Consensus 393 ~~V~v~d~~~ 402 (543)
T 1nir_A 393 GSISLIGTDP 402 (543)
T ss_dssp SEEEEEECCT
T ss_pred ceEEEEEeCC
Confidence 7899999876
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-13 Score=139.57 Aligned_cols=163 Identities=7% Similarity=0.000 Sum_probs=129.8
Q ss_pred ecCCCceeeEEEe-CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeCC
Q 018235 162 VAHQGCVNRIRAM-TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNP 239 (359)
Q Consensus 162 ~~H~~~V~~i~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp 239 (359)
..|.+.+..++|+ |++ ..+|+++ ++.|.+|++.. . ....+..|.. .+.+++|+
T Consensus 292 ~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 292 IISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSG---------------------T-YVLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp EEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTS---------------------S-BEEECSCCSCEEEEEECSS-
T ss_pred cccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCC---------------------C-ceEEccCCCcceEEeeeEc-
Confidence 3577889999999 999 5666655 78999999875 2 2334667777 89999999
Q ss_pred CCCCeEEEEcCCCcEE-EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 240 ITTGRLVTGDCNSCIY-LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~-lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
++. .|++++.++.|. +|++.. +.. ..+.+|...+..++|+|++. .|++++.++.|++||+.++ .....+..
T Consensus 347 dg~-~l~~~s~~~~l~~~~d~~~-~~~----~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg-~~~~~~~~ 418 (1045)
T 1k32_A 347 TKV-AFIHGTREGDFLGIYDYRT-GKA----EKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETG-KPTVIERS 418 (1045)
T ss_dssp SEE-EEEEEETTEEEEEEEETTT-CCE----EECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCC-eEEEEECCCceEEEEECCC-CCc----eEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCC-ceEEeccC
Confidence 887 888888788888 889865 332 23447888999999999999 9999999999999999987 55555568
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeec------ccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVM------MEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~------~~d~~i~iwd~~~g~ 357 (359)
|...+.+++|+|+|++|++..... ..+..|.+|+..++.
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 989999999999999998876532 234689999988765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-12 Score=117.82 Aligned_cols=201 Identities=7% Similarity=0.031 Sum_probs=136.4
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEE-EEEecCCCc
Q 018235 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQ-LRKVAHQGC 167 (359)
Q Consensus 89 ~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~H~~~ 167 (359)
.+++.+|+.+.. ....|.|+.+.. ....+. .....+...
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~---------------------------------------~tg~~~~~~~~~~~~~ 41 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDT---------------------------------------TAKTLTNDGLLAATQN 41 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEET---------------------------------------TTTEEEEEEEEEECSC
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcC---------------------------------------CCCeEEEeeeeeccCC
Confidence 367888988764 355799998830 022332 355667788
Q ss_pred eeeEEEeCCCCcEEEEEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 168 VNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+..++|+|++ .++++... ++.|++|++.... ...+..+..+...+.+++|+|++. +|
T Consensus 42 p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~-------------------~~~~~~~~~~~~~p~~~a~spdg~-~l 100 (347)
T 3hfq_A 42 PTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQT-------------------AHKLNTVVAPGTPPAYVAVDEARQ-LV 100 (347)
T ss_dssp CCCEEECTTC-EEEEEEEETTEEEEEEEEEETTE-------------------EEEEEEEEEESCCCSEEEEETTTT-EE
T ss_pred cceEEEccCC-eEEEEEecCCCceEEEEEecCCc-------------------EEEeeeeecCCCCCEEEEECCCCC-EE
Confidence 8999999999 46555543 7899999996410 123344445666788999999998 67
Q ss_pred EEEc-CCCcEEEEecCCCCcceecCccccC---------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce--
Q 018235 246 VTGD-CNSCIYLWEPASDATWNVDPNPFIG---------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-- 313 (359)
Q Consensus 246 ~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~---------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~-- 313 (359)
++++ .++.|.+|++...+.... ...+.. +...+.+++|+|++. +++++..++.|++||+.......
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTL-TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEE-EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCEEEEEEeCCCCCeee-cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 7666 789999999964333221 111111 223588999999999 99988889999999998321221
Q ss_pred EEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+.. ....+..++|+|+|++++..... ++.+.+|+...
T Consensus 179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~---~~~v~v~~~~~ 218 (347)
T 3hfq_A 179 SVLTMEAGFGPRHLVFSPDGQYAFLAGEL---SSQIASLKYDT 218 (347)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETT---TTEEEEEEEET
T ss_pred eeEEcCCCCCCceEEECCCCCEEEEEeCC---CCEEEEEEecC
Confidence 12222 23468899999999977665432 66788887653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=140.22 Aligned_cols=149 Identities=11% Similarity=-0.003 Sum_probs=120.3
Q ss_pred EEecCCC-ceeeEEEeCCCCcEEEEEeCCCcEE-EEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 160 RKVAHQG-CVNRIRAMTQNPHICASWADTGHVQ-VWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 160 ~~~~H~~-~V~~i~~~p~~~~~lat~s~dg~V~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.+..|.+ .+..++|+ ++ ..+++++.++.+. +|++.. .. ...+.+|...+.+++|
T Consensus 331 ~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~---------------------~~-~~~l~~~~~~~~~~~~ 386 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRT---------------------GK-AEKFEENLGNVFAMGV 386 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTT---------------------CC-EEECCCCCCSEEEEEE
T ss_pred EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCC---------------------CC-ceEecCCccceeeeEE
Confidence 3456777 89999999 87 6777778788888 888875 22 2344478789999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC----------cEEEEECC
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----------HIAIWDTR 307 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----------~I~iwD~r 307 (359)
||++. +|++++.++.|++||+.+ +... ..+.+|...|.+++|||++. .|++++.++ .|++||+.
T Consensus 387 SpDG~-~la~~~~~~~v~~~d~~t-g~~~---~~~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 387 DRNGK-FAVVANDRFEIMTVDLET-GKPT---VIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTT-CCEE---EEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCCC-EEEEECCCCeEEEEECCC-CceE---EeccCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECC
Confidence 99998 999999999999999977 4433 33447888999999999999 777776544 89999999
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
++ . +..+..|...+..++|+|+|+.|++...
T Consensus 461 ~g-~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 461 GR-K-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TT-E-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CC-c-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 86 3 6677788888999999999999988764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-12 Score=114.01 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=83.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-C----CCceEEEEeCCCC
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-H----KDEGYAIDWNPIT 241 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~sp~~ 241 (359)
.+..++|+|++..+++++..++.|.+||+.. .+.+..+.. + ...+.+++|+|++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------GETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT---------------------CCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CCeEeeEEcCCcccccccccceEECCCC
Confidence 5889999999966778888899999999976 333433332 1 1246689999999
Q ss_pred CCeEEEEc------------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 242 TGRLVTGD------------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 242 ~~~l~sgs------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
. +|++++ .++.|.+||+.+ ++.. ..+. ....+.+++|+|++. .|+++ ++.|++||+.++
T Consensus 94 ~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~---~~~~-~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 94 K-TLAIYESPVRLELTHFEVQPTRVALYDAET-LSRR---KAFE-APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp S-EEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEE---EEEE-CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTT
T ss_pred C-EEEEEecccccccccccccCceEEEEECCC-CcEE---EEEe-CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCC
Confidence 8 777775 579999999976 4433 2232 245678899999998 44444 688999999876
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=136.18 Aligned_cols=146 Identities=11% Similarity=0.087 Sum_probs=109.2
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC---ceEEEEeCCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---EGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~sp~~~ 242 (359)
..+..++|+|++ .++++ +.+|+|++||+.. .+....+.+|.. .+.+++|||+++
T Consensus 17 ~~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~---------------------g~~~~~~~~~~~~~~~v~~~~~SpDg~ 73 (723)
T 1xfd_A 17 IHDPEAKWISDT-EFIYR-EQKGTVRLWNVET---------------------NTSTVLIEGKKIESLRAIRYEISPDRE 73 (723)
T ss_dssp CCCCCCCBSSSS-CBCCC-CSSSCEEEBCGGG---------------------CCCEEEECTTTTTTTTCSEEEECTTSS
T ss_pred ccccccEEcCCC-cEEEE-eCCCCEEEEECCC---------------------CcEEEEeccccccccccceEEECCCCC
Confidence 346788999999 56666 7899999999987 455566666664 489999999998
Q ss_pred CeEEEEcCC---------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 243 GRLVTGDCN---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 243 ~~l~sgs~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+|++++.+ +.|++||+.++ ... .+....+|...+..++|||+|. .||+++. +.|++||+.++ ...
T Consensus 74 -~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~-~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g-~~~ 147 (723)
T 1xfd_A 74 -YALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQ-SLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGK-QAI 147 (723)
T ss_dssp -EEEEEESCCCCSSSCCCSEEEEEESSSC-CCE-ECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSS-CCE
T ss_pred -EEEEEecCccceeecceeeEEEEECCCC-ceE-eccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCC-ceE
Confidence 88888764 78889999873 321 1233345666689999999999 7777776 79999999886 444
Q ss_pred EEeecCCCCE------------------EEEEEcCCCCeEEEEee
Q 018235 314 TSFKAHNADV------------------NVISWNRCWLAVCWHLE 340 (359)
Q Consensus 314 ~~~~~h~~~V------------------~~i~~s~~~~~l~~~~~ 340 (359)
.....+...+ .+++|+|+|+.|++...
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 3333333333 78999999999887754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-12 Score=127.73 Aligned_cols=166 Identities=8% Similarity=0.041 Sum_probs=119.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCC-----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCC---Cce
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHK---DEG 232 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~---~~v 232 (359)
.|...+.++.|+|++ ..|++++.++ .|++||+.. ......+. .+. ..+
T Consensus 255 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~---------------------g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAET---------------------GRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTT---------------------CCEEEEEEEEECSSCCCCC
T ss_pred CCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCC---------------------CceeeEEEEccCCCeECcc
Confidence 577889999999999 5666655554 899999876 21111111 111 124
Q ss_pred EEEEeCC--CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE-EEecCCCCCEEEEEeCCC----cEEEEE
Q 018235 233 YAIDWNP--ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDG----HIAIWD 305 (359)
Q Consensus 233 ~~l~~sp--~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg----~I~iwD 305 (359)
.++.|+| ++. +|++++.+|.++||.+...+... ..+..|...|.. ++|+|++..++++++.++ .|..||
T Consensus 313 ~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~---~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 313 HPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLI---RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp SCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEE---EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CCceeecCCCCE-EEEEEccCCccEEEEEECCCCEE---EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 5789999 998 89999999999999886334433 456677778877 799999985556666665 677778
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.++ . ...+. |...+.+++|+|+++++++..........+.+|+..+++
T Consensus 389 ~~~~-~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGG-K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCC-C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCC-C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7765 2 33443 677799999999999998876654445779999987764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-11 Score=111.24 Aligned_cols=204 Identities=10% Similarity=0.026 Sum_probs=134.1
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeE-EEEEecCCC
Q 018235 88 HTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL-QLRKVAHQG 166 (359)
Q Consensus 88 ~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~H~~ 166 (359)
...++++||.+.+ ..+.|+++.+.. ....+ ..... |..
T Consensus 12 ~~~~~~vg~y~~~-~~~~i~~~~~d~---------------------------------------~~g~~~~~~~~-~~~ 50 (361)
T 3scy_A 12 SELTMLVGTYTSG-NSKGIYTFRFNE---------------------------------------ETGESLPLSDA-EVA 50 (361)
T ss_dssp GEEEEEEEECCSS-SCCEEEEEEEET---------------------------------------TTCCEEEEEEE-ECS
T ss_pred CceEEEEEeccCC-CCCCEEEEEEeC---------------------------------------CCCCEEEeecc-cCC
Confidence 3578999999875 467899999831 01122 22333 778
Q ss_pred ceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 167 CVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
....++|+|++ .+|++++.+ |.|.+|++...... ...+..+..+......+++ ++.
T Consensus 51 ~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~-----------------~~~~~~~~~~~~~p~~~~~--dg~ 110 (361)
T 3scy_A 51 NPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGT-----------------LHLLNTQKTMGADPCYLTT--NGK 110 (361)
T ss_dssp CCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTE-----------------EEEEEEEECSSSCEEEEEE--CSS
T ss_pred CCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCc-----------------EEEeeEeccCCCCcEEEEE--CCC
Confidence 88899999999 566666654 89999998762100 1223344445556677888 665
Q ss_pred CeEEEE-cCCCcEEEEecCCCCcceecCcc-----------ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 243 GRLVTG-DCNSCIYLWEPASDATWNVDPNP-----------FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 243 ~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~-----------~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
+|+++ ..++.|.+|++...+.... ... ...+...+.+++|+|++..+++++..++.|++|++....
T Consensus 111 -~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 111 -NIVTANYSGGSITVFPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp -EEEEEETTTTEEEEEEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred -EEEEEECCCCEEEEEEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 55544 4688999999976433211 111 111234568899999998566666678999999988652
Q ss_pred C----c-e------EE-eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 311 S----A-L------TS-FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 311 ~----~-~------~~-~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
. . + .. ...+...+..++|+|+|++++..... ++.|.+|+..++.
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~~~~~g~ 244 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI---GGTVIAFRYADGM 244 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---TCEEEEEEEETTE
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC---CCeEEEEEecCCc
Confidence 2 1 1 11 23345668899999999988776532 6789999987654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-12 Score=128.59 Aligned_cols=160 Identities=13% Similarity=0.182 Sum_probs=112.3
Q ss_pred eeEEEeCCCCcEEEEEeCC---------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 169 NRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
+.+.|+|++ ..|+.++.+ +.+.+||+.. .+ ...+..|...+...+|||
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~---------------------~~-~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNK---------------------RQ-LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTT---------------------TE-ECCSSCCCTTEEEEEECS
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCC---------------------Cc-EEEcccCCCcceeeEECC
Confidence 458899999 566666655 6677999987 22 223556777899999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCe-----------------EEEEecCCCCCEEEEEeCCC---
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV-----------------EDLQWSPTEPDVFASCSVDG--- 299 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~v~~sp~~~~~las~s~Dg--- 299 (359)
+|. .||.+. ++.|++|++..+.... .+..++...+ ..+.|||+|+ .||.++.|.
T Consensus 122 dG~-~la~~~-~~~i~~~~~~~~~~~~---lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v 195 (740)
T 4a5s_A 122 VGH-KLAYVW-NNDIYVKIEPNLPSYR---ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEV 195 (740)
T ss_dssp STT-CEEEEE-TTEEEEESSTTSCCEE---CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTC
T ss_pred CCC-EEEEEE-CCeEEEEECCCCceEE---EcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCC
Confidence 998 888885 7899999987633221 1223333222 3489999999 777765332
Q ss_pred ---------------------------------cEEEEECCC---CCC-ceEEee------cCCCCEEEEEEcCCCCeEE
Q 018235 300 ---------------------------------HIAIWDTRV---GKS-ALTSFK------AHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 300 ---------------------------------~I~iwD~r~---~~~-~~~~~~------~h~~~V~~i~~s~~~~~l~ 336 (359)
.|+|||+.+ +.. ....+. .|...+..++|+|+|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~ 275 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL 275 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEE
Confidence 488899887 521 233443 2777799999999999777
Q ss_pred EEeeecccceEEEEEeCcCCc
Q 018235 337 WHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 337 ~~~~~~~~d~~i~iwd~~~g~ 357 (359)
......+....|.+|+..+|+
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTT
T ss_pred EEeCCCCCEEEEEEEECCCCc
Confidence 666544556689999988775
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-11 Score=110.54 Aligned_cols=155 Identities=9% Similarity=0.045 Sum_probs=106.6
Q ss_pred ceeeEEEeCCCCcEEEEEeC------------CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 167 CVNRIRAMTQNPHICASWAD------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+..+.|+|++ ..+++++. ++.|.+||+.... ....+..+..+. .+.+
T Consensus 93 ~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------~~~~~~~~~~~~-~~~~ 152 (349)
T 1jmx_B 93 SMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL------------------EAKPVRTFPMPR-QVYL 152 (349)
T ss_dssp CSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG------------------GBCCSEEEECCS-SCCC
T ss_pred cccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcc------------------ccceeeeccCCC-cccc
Confidence 37899999999 55555554 4899999987521 023334444433 5789
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC----------------------------------------
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---------------------------------------- 274 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---------------------------------------- 274 (359)
++|+|++. +++ ++ +.|++||+.++ +... .+..
T Consensus 153 ~~~s~dg~-l~~-~~--~~i~~~d~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 153 MRAADDGS-LYV-AG--PDIYKMDVKTG-KYTV---ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp EEECTTSC-EEE-ES--SSEEEECTTTC-CEEE---EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred eeECCCCc-EEE-cc--CcEEEEeCCCC-ceec---cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 99999997 555 43 34999999763 3221 1100
Q ss_pred ----------------------------CCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 275 ----------------------------HSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 275 ----------------------------h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
+...+..++|+| ++. .++++ ++.|.+||+.++ +.+..+. ....+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~-~~~~~~~-~~~~~~~ 299 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQR-KLIKAAN-LDHTYYC 299 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCE
T ss_pred CccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccC-eEEEEEc-CCCCccc
Confidence 112456788889 888 66666 889999999986 5555554 3345789
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++|+|++..|+.... ++.|.+||..++++
T Consensus 300 ~~~s~dg~~l~~~~~----~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 300 VAFDKKGDKLYLGGT----FNDLAVFNPDTLEK 328 (349)
T ss_dssp EEECSSSSCEEEESB----SSEEEEEETTTTEE
T ss_pred eEECCCCCEEEEecC----CCeEEEEeccccce
Confidence 999999998877543 68899999987753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=114.45 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=113.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC-C------cEEecCCCCceEEEEeC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS-P------LVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~h~~~v~~l~~s 238 (359)
..+.+++|+|++..++++...++.|.+|++....... ..+ . ......+.....+++|+
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~s 219 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD---------------NKEKFLTKGTPEAFKVAPGSGPRHLIFN 219 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT---------------TCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc---------------cccceeecccccceecCCCCCCeEEEEc
Confidence 3457899999996577777778999999987621000 001 1 11122334467799999
Q ss_pred CCCCCeEEEEc-CCCcEEEEecCCCCcce--ecCccccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCC-C--
Q 018235 239 PITTGRLVTGD-CNSCIYLWEPASDATWN--VDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGK-S-- 311 (359)
Q Consensus 239 p~~~~~l~sgs-~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~-~-- 311 (359)
|++. +|++++ .++.|.+|++.. +... ........+...+.+++|+|+++.++++... ++.|.+|++.... .
T Consensus 220 pdg~-~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~ 297 (361)
T 3scy_A 220 SDGK-FAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT 297 (361)
T ss_dssp TTSS-EEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred CCCC-EEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence 9998 565554 689999999975 4321 1111223345567899999999944455555 6899999996321 2
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE--eCcCCcc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL--DCSRGEI 358 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw--d~~~g~v 358 (359)
.+..+.. ...+..++|+|+|++|+..... ++.+.+| +..+|.+
T Consensus 298 ~~~~~~~-g~~~~~~~~spdg~~l~~~~~~---~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 298 KVGYQLT-GIHPRNFIITPNGKYLLVACRD---TNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEC-SSCCCEEEECTTSCEEEEEETT---TTEEEEEEECTTTCCE
T ss_pred EeeEecC-CCCCceEEECCCCCEEEEEECC---CCCEEEEEEECCCCcE
Confidence 2333443 5568899999999988877642 5778885 5556653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-12 Score=128.14 Aligned_cols=165 Identities=10% Similarity=0.116 Sum_probs=115.2
Q ss_pred CceeeEEEeCCCCcEEEEEe---------------------------------CCCcEEEEECCCCccccccccccccCC
Q 018235 166 GCVNRIRAMTQNPHICASWA---------------------------------DTGHVQVWDLRSHLNALAESETIVGQG 212 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s---------------------------------~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (359)
+.+.++.|+|++ ..||+++ .++.|++||+...
T Consensus 181 ~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-------------- 245 (706)
T 2z3z_A 181 GIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-------------- 245 (706)
T ss_dssp TCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT--------------
T ss_pred CCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC--------------
Confidence 346899999999 6666665 4467899998762
Q ss_pred CCCCCCCCCcEEe--cCCCCceEEEEeCCCCCCeEEEEcCCC-----cEEEEecCCCCcceecCcccc-CCC---CCeEE
Q 018235 213 APQVSNQSPLVKF--GGHKDEGYAIDWNPITTGRLVTGDCNS-----CIYLWEPASDATWNVDPNPFI-GHS---ASVED 281 (359)
Q Consensus 213 ~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~-~h~---~~V~~ 281 (359)
...... ..|...+.+++|+|++. +|++++.++ .|++||+.++.... ..+. .+. ..+.+
T Consensus 246 -------~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 246 -------KTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVETDKHYVEPLHP 314 (706)
T ss_dssp -------EEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEEECSSCCCCCSC
T ss_pred -------ceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceee---EEEEccCCCeECccCC
Confidence 211111 24666789999999998 888877665 89999998732322 1111 122 23467
Q ss_pred EEecC--CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE-EEEcCCCCeEEEEeeecc-cceEEEEEeCcCCc
Q 018235 282 LQWSP--TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRCWLAVCWHLEVMM-EHFLFMILDCSRGE 357 (359)
Q Consensus 282 v~~sp--~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~s~~~~~l~~~~~~~~-~d~~i~iwd~~~g~ 357 (359)
++|+| ++. ++++++.|+.++||.+......+..+..|...+.. ++|+|++..|++...... ....|..|+..++.
T Consensus 315 ~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 315 LTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 89999 998 88999999999999886322566677778888876 899999998877654211 01367777776654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=126.26 Aligned_cols=150 Identities=10% Similarity=-0.028 Sum_probs=111.0
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.+....|+|++..++++.+.++.+.|||+.. .++......+. .+++|||+|+ +|+
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~---------------------g~~~~l~~~~~---~~~~~spDG~-~la 165 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDG---------------------GGLRELARLPG---FGFVSDIRGD-LIA 165 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEET---------------------TEEEEEEEESS---CEEEEEEETT-EEE
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccC---------------------CcEEEeecCCC---ceEEECCCCC-EEE
Confidence 3446688888855544445555566999876 23322232222 7899999998 888
Q ss_pred EEcCC----CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCCceEEeecCC
Q 018235 247 TGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 247 sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+++.+ +.|++||+.+ +.. ..+..|...+..++|||+|+ .|+++..++ .|++||+.++ ... .+..|.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~-g~~----~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~-~~~-~~~~~~ 237 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSS-GGL----RVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDG-SVE-DLELPS 237 (582)
T ss_dssp EEEEEETTEEEEEEEETTT-CCC----EEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTC-CEE-ECCCSC
T ss_pred EEEEcCCCCeEEEEEcCCC-CCc----eEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCC-cEE-EccCCC
Confidence 77766 7899999876 443 35678888999999999999 788888888 8999999986 444 566777
Q ss_pred CCEEEEE--------EcCCCCeEEEEeeecccceEEEEEeC
Q 018235 321 ADVNVIS--------WNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 321 ~~V~~i~--------~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
..+..+. |+|+|.+++.... ++.+++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~----~g~~~l~~~ 274 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARR----EGRSAVFID 274 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEE----TTEEEEEET
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEc----CCcEEEEEE
Confidence 7777777 9999965555544 788999987
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-11 Score=110.01 Aligned_cols=121 Identities=10% Similarity=0.034 Sum_probs=84.8
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC------CceEEEEeCCC
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK------DEGYAIDWNPI 240 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~l~~sp~ 240 (359)
.+..++|+|++..++++...++.|.+||+.. .+.+..+..+. ..+.+++|+|+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---------------------~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------CKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---------------------CcEEEEEEcccccccccccccceEECCC
Confidence 6889999999965677777899999999976 23333333221 23678999999
Q ss_pred CCCeEEEEcCC------------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 241 TTGRLVTGDCN------------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
+. +|++++.+ +.|.+||+.+ +........+ .+...+.+++|+|++. +++ ++ +.|.+||+.+
T Consensus 103 g~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~ 175 (349)
T 1jmx_B 103 GK-EVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTF-PMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKT 175 (349)
T ss_dssp SS-EEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEE-ECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTT
T ss_pred CC-EEEEEcccccccccccccCCCeEEEEECCC-ccccceeeec-cCCCcccceeECCCCc-EEE-cc--CcEEEEeCCC
Confidence 98 88877755 8999999976 2222111222 2444688999999998 766 33 3499999988
Q ss_pred CCCceEEe
Q 018235 309 GKSALTSF 316 (359)
Q Consensus 309 ~~~~~~~~ 316 (359)
+ +.+..+
T Consensus 176 ~-~~~~~~ 182 (349)
T 1jmx_B 176 G-KYTVAL 182 (349)
T ss_dssp C-CEEEEE
T ss_pred C-ceeccc
Confidence 6 444444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=120.17 Aligned_cols=204 Identities=8% Similarity=-0.014 Sum_probs=133.9
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
.+..|+.++.+.||+ .+|+.+... ++.+.||.+.
T Consensus 19 ~~~~~~~~~~~~~DG-----------~~la~~s~~----~g~~~lw~~~------------------------------- 52 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDG-----------DKLLVVGFS----EGSVNAYLYD------------------------------- 52 (582)
T ss_dssp HHHSCEEEEEEEETT-----------TEEEEEEEE----TTEEEEEEEE-------------------------------
T ss_pred HhccchheeecCCCC-----------CeEEEEEcc----CCceeEEEEc-------------------------------
Confidence 346789999999996 255554422 4468888762
Q ss_pred CCcccCCCCCCCeEEEEEecCC-CceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCC
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQ-GCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (359)
.... .++..|. ..|..+.|+|+ .++++++. +....||.+.... ..
T Consensus 53 ----------~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~------------------~g 101 (582)
T 3o4h_A 53 ----------GGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSR------------------PG 101 (582)
T ss_dssp ----------TTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTS------------------TT
T ss_pred ----------CCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccC------------------CC
Confidence 1122 3344555 68999999997 57777664 4555666554300 01
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD- 298 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D- 298 (359)
... .+..+. .....+|+|++.+.+++.+.++.+.+||+.+ +... .+..+.. .+++|||+|+ .|++++.+
T Consensus 102 ~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~----~l~~~~~--~~~~~spDG~-~la~~~~~~ 171 (582)
T 3o4h_A 102 EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLR----ELARLPG--FGFVSDIRGD-LIAGLGFFG 171 (582)
T ss_dssp CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEE----EEEEESS--CEEEEEEETT-EEEEEEEEE
T ss_pred ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEE----EeecCCC--ceEEECCCCC-EEEEEEEcC
Confidence 111 222222 2346688888876555544455566999976 4432 2333333 7899999999 88877776
Q ss_pred ---CcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 299 ---GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 299 ---g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.|++||+.++ . ...+..|...++.++|+|+|+.|+.... .....|.+|+..++..
T Consensus 172 ~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 172 GGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDGSV 230 (582)
T ss_dssp TTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTTCCE
T ss_pred CCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCCCcE
Confidence 78999999886 3 4567788888999999999999984433 1123799999887764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=130.60 Aligned_cols=174 Identities=11% Similarity=0.029 Sum_probs=110.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce---------EEEE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG---------YAID 236 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~l~ 236 (359)
+.+..++|+|+| ..||.+. ++.|++|++.......-.. .......+.||...+ .+++
T Consensus 110 ~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~------------~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 110 RPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITF------------NGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp SSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCC------------CCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred cccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEec------------CCCcCCeEcccccceeeeecccCcccEE
Confidence 568899999999 5666654 7899999997621100000 011112334443332 4899
Q ss_pred eCCCCCCeEEEEcCCC----------------------------------cEEEEecCCCCcc----ee-cCccccCCCC
Q 018235 237 WNPITTGRLVTGDCNS----------------------------------CIYLWEPASDATW----NV-DPNPFIGHSA 277 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg----------------------------------~I~lwd~~~~~~~----~~-~~~~~~~h~~ 277 (359)
|||++. +|++++.|. .|++||+.. +.. .+ ....+.+|..
T Consensus 176 wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 176 WSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp ECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCE
T ss_pred ECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcc
Confidence 999998 888877552 788999876 332 10 0123457888
Q ss_pred CeEEEEecCCCCCEEEEEeCC----CcEEEEE----CCCCCCceEEe----ecCCCCEE-----EEEEcCCCCeEEEEee
Q 018235 278 SVEDLQWSPTEPDVFASCSVD----GHIAIWD----TRVGKSALTSF----KAHNADVN-----VISWNRCWLAVCWHLE 340 (359)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~D----g~I~iwD----~r~~~~~~~~~----~~h~~~V~-----~i~~s~~~~~l~~~~~ 340 (359)
.+..++|||++. ++++.... ..|.+|| +.++ .+...+ ..|...+. .+.|+|+|+.+++...
T Consensus 254 ~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 254 YFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp EEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred eEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 999999999976 77664433 2488899 7665 322222 35666676 8899999997765332
Q ss_pred ecccceEEEEEeCcCCc
Q 018235 341 VMMEHFLFMILDCSRGE 357 (359)
Q Consensus 341 ~~~~d~~i~iwd~~~g~ 357 (359)
.......|.+|+...+.
T Consensus 332 ~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CTTSCEEEEEESSCSTT
T ss_pred ccCCceEEEEEECCCCc
Confidence 22234567788876554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=104.94 Aligned_cols=162 Identities=7% Similarity=0.001 Sum_probs=107.0
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECC-CCccccccccccccCCCCCCCCCCCcEE--ecCCCCceEEEEeCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLR-SHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWNPI 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~sp~ 240 (359)
+...+..++|+|++ .++++++.+ .|.+|++. . .+.... ...+. ...+++|+|+
T Consensus 38 ~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~---------------------g~~~~~~~~~~~g-~~~~~~~spd 93 (365)
T 1jof_A 38 QDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSP---------------------TEIVHEASHPIGG-HPRANDADTN 93 (365)
T ss_dssp TTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEET---------------------TEEEEEEEEECCS-SGGGGCTTSC
T ss_pred CCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCC---------------------CCEEEeeEeecCC-CCccEEECCC
Confidence 44578899999999 666676766 99999986 3 122111 11112 2446899999
Q ss_pred CCC-eEEEEc-------------CCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEe-CCCcEEEE
Q 018235 241 TTG-RLVTGD-------------CNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCS-VDGHIAIW 304 (359)
Q Consensus 241 ~~~-~l~sgs-------------~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iw 304 (359)
+.. ++++++ .+|++.+|++...+........+. .+...+.+++|+|+++ .++++. .++.|++|
T Consensus 94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTH 172 (365)
T ss_dssp CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEE
Confidence 873 244553 689999999975344321111111 2456899999999998 555544 57899999
Q ss_pred ECC-CCCCc--eEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 305 DTR-VGKSA--LTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 305 D~r-~~~~~--~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|+. ++ +. +..+. .|...+..++|+|+|++++.... .++.+.+|+..
T Consensus 173 ~~~~~g-~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~ 223 (365)
T 1jof_A 173 RKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME---AGNRICEYVID 223 (365)
T ss_dssp EECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEEEC
T ss_pred EECCCC-CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC---CCCeEEEEEEe
Confidence 998 55 32 22333 34677999999999998876643 25678888643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-10 Score=104.79 Aligned_cols=167 Identities=10% Similarity=-0.017 Sum_probs=107.9
Q ss_pred CceeeEEEeCCCCc-EEEEEe-------------CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec----C
Q 018235 166 GCVNRIRAMTQNPH-ICASWA-------------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG----G 227 (359)
Q Consensus 166 ~~V~~i~~~p~~~~-~lat~s-------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 227 (359)
+.+.+++|+|++.. +++++. .+|.+.+|++... ......+. .
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--------------------g~~~~~~~~~~~~ 142 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--------------------GKLEKNVQNYEYQ 142 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--------------------CCEEEEEEEEECC
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC--------------------CcCcceEeeEEeC
Confidence 44677899999943 355543 6899999999741 22211221 2
Q ss_pred CCCceEEEEeCCCCCCeEEEEc-CCCcEEEEecC-CCCcceecCcccc--CCCCCeEEEEecCCCCCEEEEEe-CCCcEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGD-CNSCIYLWEPA-SDATWNVDPNPFI--GHSASVEDLQWSPTEPDVFASCS-VDGHIA 302 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs-~dg~I~lwd~~-~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~las~s-~Dg~I~ 302 (359)
+...+++++|+|++. +|++++ .++.|++|++. + ++... ...+. .|...+..++|+|+++ .+++++ .++.|.
T Consensus 143 ~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~-g~~~~-~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~ 218 (365)
T 1jof_A 143 ENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLAS-GEVEL-VGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRIC 218 (365)
T ss_dssp TTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTT-SCEEE-EEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEE
T ss_pred CCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCC-CCEEE-eeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEE
Confidence 456789999999998 676654 46799999997 4 33221 12222 2456799999999999 555554 578999
Q ss_pred EEECCC--CCCce---EEee-------cCCC------CEEEEE-EcCCCCeEEEEeeecc--cceEEEEEeCc-CCc
Q 018235 303 IWDTRV--GKSAL---TSFK-------AHNA------DVNVIS-WNRCWLAVCWHLEVMM--EHFLFMILDCS-RGE 357 (359)
Q Consensus 303 iwD~r~--~~~~~---~~~~-------~h~~------~V~~i~-~s~~~~~l~~~~~~~~--~d~~i~iwd~~-~g~ 357 (359)
+|++.. + ... ..+. +|.. .+..++ |+|+|++|+...+... ..+.|.+|+.. +|.
T Consensus 219 v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 219 EYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred EEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 998753 3 221 1222 1222 488999 9999998876654210 01279999875 443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-10 Score=105.36 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=112.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE--eCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID--WNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~ 240 (359)
.|...+..+.|+|++ ..|+.++.++.|++||+.. .+....+..+...+.... ++|+
T Consensus 78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLAT---------------------LEENVVYQVPAEWVGYGTWVANSD 135 (388)
T ss_dssp SSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcceeeeechhhcccccceeECCC
Confidence 444555578899999 6777778889999999987 344444555555444444 4888
Q ss_pred CCCeEEE----------------------EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeC
Q 018235 241 TTGRLVT----------------------GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSV 297 (359)
Q Consensus 241 ~~~~l~s----------------------gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~ 297 (359)
+. +++. .+.+..|++||+.+ +.. ..+..+...+..++|+| ++. .|+.++.
T Consensus 136 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g~~----~~l~~~~~~~~~~~~sp~dg~-~l~~~~~ 208 (388)
T 3pe7_A 136 CT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT-GES----TVILQENQWLGHPIYRPYDDS-TVAFCHE 208 (388)
T ss_dssp SS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-CCE----EEEEEESSCEEEEEEETTEEE-EEEEEEC
T ss_pred CC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCC-Cce----EEeecCCccccccEECCCCCC-EEEEEEe
Confidence 87 6653 22456899999977 332 34455677899999999 888 7766665
Q ss_pred C------CcEEEEECCCCCCceEEeecCC--CCEEEEEEcCCCCeEEEEeeecc-cceEEEEEeCcCCcc
Q 018235 298 D------GHIAIWDTRVGKSALTSFKAHN--ADVNVISWNRCWLAVCWHLEVMM-EHFLFMILDCSRGEI 358 (359)
Q Consensus 298 D------g~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~s~~~~~l~~~~~~~~-~d~~i~iwd~~~g~v 358 (359)
. ..|.++|+... ....+..+. ..+..+.|+|+|+.|++.....+ ....|.+|+..+|+.
T Consensus 209 ~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp SCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 3 37888887764 344454444 24778999999998876543222 234599999988763
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.1e-11 Score=109.33 Aligned_cols=136 Identities=9% Similarity=-0.021 Sum_probs=103.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.+.+ |+.+.| ++ .+++++ .+|.|++||+... ........|...+.++.+.+.
T Consensus 85 ~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl---------------------~~~~~~~~~~~~v~~i~~~~p- 137 (388)
T 1xip_A 85 KEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEEL---------------------SEFRTVTSFEKPVFQLKNVNN- 137 (388)
T ss_dssp EECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSST---------------------TCEEEEEECSSCEEEEEECSS-
T ss_pred eeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhh---------------------hccCccceeecceeeEEecCC-
Confidence 35777 999999 66 677777 7899999999873 223344556667888777653
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc--eEEe---
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA--LTSF--- 316 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~--~~~~--- 316 (359)
.+++++.||.|.+||+... ... .+...|.+++|||.| ++.|..||+|++|+.... .. ..++
T Consensus 138 --~~av~~~dG~L~v~dl~~~-~~~-------~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~-~~~~k~~I~~P 203 (388)
T 1xip_A 138 --TLVILNSVNDLSALDLRTK-STK-------QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNG-EMEKQFEFSLP 203 (388)
T ss_dssp --EEEEEETTSEEEEEETTTC-CEE-------EEEESEEEEEECSSE---EEEEETTSCEEEEEEETT-EEEEEEEECCC
T ss_pred --CEEEEECCCCEEEEEccCC-ccc-------cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCc-cccccceecCC
Confidence 3888899999999999863 322 145689999999999 577999999999988775 32 3445
Q ss_pred ---e---cCCCCEEEEEEcCCCCeEEEE
Q 018235 317 ---K---AHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 317 ---~---~h~~~V~~i~~s~~~~~l~~~ 338 (359)
. +|...|.+|+|.+++.+++.=
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEEE
Confidence 2 377889999999998887753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=117.88 Aligned_cols=142 Identities=8% Similarity=0.020 Sum_probs=104.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc-----eEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE-----GYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~sp~ 240 (359)
.....++|+|++ .+++++ +|+|++||+.. ......+.+|... ...++|||+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEY---------------------GNSSVFLENSTFDEFGHSINDYSISPD 72 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTT---------------------CCEEEEECTTTTTTCCSCCCEEEECTT
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCC---------------------CceEEEEechhhhhhcccccceEECCC
Confidence 346689999999 788885 89999999987 4445556666532 235889999
Q ss_pred CCCeEEEEcCC---------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 241 TTGRLVTGDCN---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 241 ~~~~l~sgs~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+. +|+.++.+ +.+.+||+.+ ++. ..+..|...+..++|||+|. .||.++ ++.|++||+.++..
T Consensus 73 g~-~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~~----~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 73 GQ-FILLEYNYVKQWRHSYTASYDIYDLNK-RQL----ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp SS-EEEEEEEEEECSSSCEEEEEEEEETTT-TEE----CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCC
T ss_pred CC-EEEEEECCeeeEEEccceEEEEEECCC-CcE----EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCce
Confidence 98 88888765 5677999987 443 34667888999999999999 677774 68999999987622
Q ss_pred ceEEeecCCCCE-----------------EEEEEcCCCCeEEEEe
Q 018235 312 ALTSFKAHNADV-----------------NVISWNRCWLAVCWHL 339 (359)
Q Consensus 312 ~~~~~~~h~~~V-----------------~~i~~s~~~~~l~~~~ 339 (359)
...+..++...+ ..+.|||+|+.|++..
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 111223333222 3489999999888764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-09 Score=96.35 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=114.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCC------------------------CcEEEEECCCCccccccccccccCCCCCCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADT------------------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d------------------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (359)
-+.+.+|+++|++ +++++...+ +.|.+||... .+
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------------------g~ 80 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---------------------AE 80 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---------------------CC
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---------------------Ce
Confidence 4789999999999 788887777 4688888764 33
Q ss_pred CcEEec-CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc---------cCCCCCeEEEEecC-CCC
Q 018235 221 PLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---------IGHSASVEDLQWSP-TEP 289 (359)
Q Consensus 221 ~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---------~~h~~~V~~v~~sp-~~~ 289 (359)
.+..+. ++.....+|+++|++. ++++...++.|++|+.......+ ..+ .++-.....|+++| ++.
T Consensus 81 ~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~---~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 81 ILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPL---LILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp EEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCS---EEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred EEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEE---EEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 333333 3445788999999998 88998889999999985421122 222 24455789999999 666
Q ss_pred CEEEEEe-CCCcEEEEECCCCCCceEEeecCC----------CCEEEEEEcCC-CCeEEEEeeecccceEEEEEeCcCCc
Q 018235 290 DVFASCS-VDGHIAIWDTRVGKSALTSFKAHN----------ADVNVISWNRC-WLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 290 ~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~----------~~V~~i~~s~~-~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++++.+ .++.|++||.. + ..+..+.... ...+.|+++|+ +.+++.+.. ++.|++|+..+|+
T Consensus 157 -lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~----~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 157 -VFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE----NGRIQCFKTDTKE 229 (329)
T ss_dssp -EEEEECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT----TTEEEEEETTTCC
T ss_pred -EEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC----CCEEEEEECCCCc
Confidence 888887 79999999943 3 4555553222 23899999998 555555544 7789999987554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=107.64 Aligned_cols=160 Identities=6% Similarity=-0.057 Sum_probs=104.2
Q ss_pred eEEEe--CCCCc-EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCC-CCcEEecC-----CCCceEEEEeCCC
Q 018235 170 RIRAM--TQNPH-ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGG-----HKDEGYAIDWNPI 240 (359)
Q Consensus 170 ~i~~~--p~~~~-~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~v~~l~~sp~ 240 (359)
..+|+ |++.. ++++...+..|.++++.. .. .....+.. |...+.+++|||+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~--------------------~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA--------------------PGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTS--------------------TTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCC--------------------CCCCCCEeccCCccCCCCccccCcEECCC
Confidence 55666 99965 454444466677776651 00 12233444 5667889999999
Q ss_pred CCCeEEEEcCC----------CcEEEEecCCC-----CcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCC------
Q 018235 241 TTGRLVTGDCN----------SCIYLWEPASD-----ATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVD------ 298 (359)
Q Consensus 241 ~~~~l~sgs~d----------g~I~lwd~~~~-----~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~D------ 298 (359)
++ .|++++.+ ..|++|++... +.. ..+. .+...+..++|||+|+ .|+.++.+
T Consensus 141 g~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~ 214 (662)
T 3azo_A 141 RG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV----RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPW 214 (662)
T ss_dssp TT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS----EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTT
T ss_pred CC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce----eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCC
Confidence 98 88888766 58999998652 222 3444 5567788899999999 77766644
Q ss_pred --CcEEEEECC-CCC-CceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 299 --GHIAIWDTR-VGK-SALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 299 --g~I~iwD~r-~~~-~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|++||+. ++. .....+ ..|...+..+.|+|+|++++.+.. .....|.+|+..++.
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGA 276 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCC
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCc
Confidence 379999998 331 133334 455788999999999995544432 111256677765553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-10 Score=110.43 Aligned_cols=164 Identities=11% Similarity=0.043 Sum_probs=106.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCC--------CcEEEEECCCCccccccccccccCCCCCCCCC---CCcEEecCCCCc
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADT--------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQ---SPLVKFGGHKDE 231 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~ 231 (359)
.+...+..++|+|+| ..||..+.+ ..|++||+... + .+.....+|...
T Consensus 185 ~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~--------------------g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 185 DAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTED--------------------GRFADTRTLLGGPEEA 243 (662)
T ss_dssp SCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTT--------------------SCEEEEEEEEEETTBC
T ss_pred cCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCC--------------------CcccccEEeCCCCCce
Confidence 566788899999999 555544433 47999998730 2 233344456678
Q ss_pred eEEEEeCCCCCCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCC--------eEEEEecCCCCCEEEEEeCCCcE
Q 018235 232 GYAIDWNPITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSAS--------VEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~--------V~~v~~sp~~~~~las~s~Dg~I 301 (359)
+..+.|+|++. ++++++.++ .|++|++.. +.+. .....+... +..++|+|++. ++++++. +.+
T Consensus 244 ~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~~~---~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~ 316 (662)
T 3azo_A 244 IAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GAAT---QLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAA 316 (662)
T ss_dssp EEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CCEE---ESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSC
T ss_pred EcceEECCCCe-EEEEECCCCCeEEEEEECCC-Ccee---ecccccccccCccccccCceEeEeCCCE-EEEEEEc-Ccc
Confidence 99999999999 899998888 556666544 3332 111122111 56788999988 8999988 999
Q ss_pred EEE--ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 302 AIW--DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 302 ~iw--D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|| |+..+ .+..+..|...+..+ |++++..+++..........|.+++..+++
T Consensus 317 ~l~~~d~~~~--~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 317 VLGILDPESG--ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEEETTTT--EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEECCCC--cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 999 55543 466777777777766 144555555444332233455566665554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-09 Score=92.11 Aligned_cols=156 Identities=10% Similarity=0.101 Sum_probs=115.5
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~ 241 (359)
+...++.+++.|++ .++++...++.|.+|+... ..+..+. ++.....+|++++++
T Consensus 119 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g----------------------~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 119 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG----------------------NVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS----------------------CEEEEEECTTTCSSEEEEEECSSS
T ss_pred cCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC----------------------CEEEEeCCCCccCCcEEEEECCCC
Confidence 44678999999998 6888888889999999654 2233332 344568899999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCcccc--CCCCCeEEEEecCCCCCEEEEEeCCC-cEEEEECCCCCCceEEeec
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~ 318 (359)
. ++++...++.|++|+... ... ..+. ++...+..|+++|++. ++++...++ .|++||... ..+..+..
T Consensus 176 ~-l~v~~~~~~~i~~~~~~g--~~~---~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g--~~~~~~~~ 246 (286)
T 1q7f_A 176 E-IFISDNRAHCVKVFNYEG--QYL---RQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--QLISALES 246 (286)
T ss_dssp E-EEEEEGGGTEEEEEETTC--CEE---EEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--CEEEEEEE
T ss_pred C-EEEEECCCCEEEEEcCCC--CEE---EEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC--CEEEEEcc
Confidence 7 888888899999999743 332 2232 2346789999999997 888888876 999999643 45556654
Q ss_pred CC--CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 HN--ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h~--~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+. ..+..++|+|+|.+++.+ . ++.|++|+....
T Consensus 247 ~~~~~~~~~i~~~~~g~l~vs~-~----~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDGSVVLAS-K----DYRLYIYRYVQL 281 (286)
T ss_dssp SSCCSCEEEEEEETTTEEEEEE-T----TTEEEEEECSCC
T ss_pred cCCCCcceeEEECCCCcEEEEC-C----CCeEEEEEcccc
Confidence 43 347899999999866653 3 788999987653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=100.91 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=113.5
Q ss_pred EEEecCCCceee-----EEEeCCCCcEEEEEeC-CCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 159 LRKVAHQGCVNR-----IRAMTQNPHICASWAD-TGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 159 ~~~~~H~~~V~~-----i~~~p~~~~~lat~s~-dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
.++..|.+.+.. .+|+|++. .|+..+. +|. |.+||+.. ........++..
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~---------------------g~~~~lt~~~~~ 81 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNT---------------------QVATQLTEGRGD 81 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTT---------------------CEEEECCCSSCB
T ss_pred EEecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCC---------------------CceEEeeeCCCC
Confidence 455567766666 88999994 4555454 774 77778765 333344445555
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEe--cCCCCCEEEEE-------------
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW--SPTEPDVFASC------------- 295 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~las~------------- 295 (359)
.+.++.|+|++. .|+.++.++.|++||+.++ ... ..+..+...+....| +|++. +++..
T Consensus 82 ~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g-~~~---~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 82 NTFGGFLSPDDD-ALFYVKDGRNLMRVDLATL-EEN---VVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CSSSCEECTTSS-EEEEEETTTEEEEEETTTC-CEE---EEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSH
T ss_pred CccceEEcCCCC-EEEEEeCCCeEEEEECCCC-cce---eeeechhhcccccceeECCCCC-eeccccccCccccccccc
Confidence 555788999998 8999998999999999874 322 223444555544444 89988 66532
Q ss_pred ---------eCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcC-CCCeEEEEeeeccc--ceEEEEEeCcCCc
Q 018235 296 ---------SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR-CWLAVCWHLEVMME--HFLFMILDCSRGE 357 (359)
Q Consensus 296 ---------s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~~~~~--d~~i~iwd~~~g~ 357 (359)
..+..|.+||+.++ . ...+..+...+..++|+| +|..|++....... ...|.+++...+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN 227 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred chhhhhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence 23467999999986 3 445556677899999999 99988877642111 2356777765543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=104.17 Aligned_cols=155 Identities=10% Similarity=0.076 Sum_probs=109.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.++.+++++.. .++++|+.++ +.+|++............ ...+.... .+.. |+.|+| ++. .|+
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~----------~~~~~~~~-~lp~-V~~l~f--d~~-~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDST----------PLTFKWEK-EIPD-VIFVCF--HGD-QVL 101 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSC----------CCCCSEEE-ECTT-EEEEEE--ETT-EEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccc----------cccceEEe-eCCC-eeEEEE--CCC-EEE
Confidence 69999999988 7888888775 556997653211110000 02233333 3555 999999 666 888
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
++ .++.|++||+++..+. .....|...|.++.+.+. -+|+++.||.|.+||+..+ ... . +...|.|+
T Consensus 102 v~-~~~~l~v~dv~sl~~~----~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~-~~~-~---~~~~Vs~v 168 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSEF----RTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTK-STK-Q---LAQNVTSF 168 (388)
T ss_dssp EE-ESSEEEEEESSSTTCE----EEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTC-CEE-E---EEESEEEE
T ss_pred EE-cCCcEEEEEchhhhcc----CccceeecceeeEEecCC---CEEEEECCCCEEEEEccCC-ccc-c---ccCCceEE
Confidence 88 7899999999874322 335567778888877654 3888999999999999976 332 2 44579999
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|+|.| ++.+.. ++.+++|+...++
T Consensus 169 ~WSpkG--~~vg~~----dg~i~~~~~~~~~ 193 (388)
T 1xip_A 169 DVTNSQ--LAVLLK----DRSFQSFAWRNGE 193 (388)
T ss_dssp EECSSE--EEEEET----TSCEEEEEEETTE
T ss_pred EEcCCc--eEEEEc----CCcEEEEcCCCcc
Confidence 999999 455554 7889999877655
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-08 Score=101.16 Aligned_cols=178 Identities=10% Similarity=0.021 Sum_probs=118.4
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeC----CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
....|...+..+.|+|++..++++... +..|++||+........ .......+..+...+..
T Consensus 227 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~--------------~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 227 EFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT--------------GILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC--------------SSCCCEEEECSSSSCEE-
T ss_pred ccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC--------------CccceEEeeCCCCcEEE-
Confidence 333456678899999999545444431 56899999864100000 01134555566655544
Q ss_pred EeCCCCCCeEEEEcCC----CcEEEEecCCCCcceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCc--EEEEECC
Q 018235 236 DWNPITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGH--IAIWDTR 307 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r 307 (359)
.|+|++. .|+..+.. +.|.+|++..+.... .+.+..|.. .+.+++|++.+. ++++...++. |.+||+.
T Consensus 292 ~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 292 YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETT
T ss_pred EEeccCC-EEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECC
Confidence 4888887 55544432 369999987643100 134445544 688899997666 8888988885 5566775
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++ ..+..+..+...|..++++|++..+++...+...+..+.+|+..+++
T Consensus 368 ~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 TG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TC-CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC-CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 55667776777889999999998888777766678899999988775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-08 Score=89.64 Aligned_cols=165 Identities=9% Similarity=-0.045 Sum_probs=112.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..+...+.+++|+|++ .+++++..++.|.+||... ......+..+...+.+++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIH 95 (333)
T ss_dssp EEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEEC
T ss_pred EEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC---------------------CcEEEEeeCCCCCcceEEEC
Confidence 3445677778999999998 6888888899999999875 23222233455689999999
Q ss_pred CCCCCeEEEEcCC----CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC------CCcEEEEECCC
Q 018235 239 PITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTRV 308 (359)
Q Consensus 239 p~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r~ 308 (359)
+++. ++++...+ +.|.+||... +..... .....+...++++.++|++. ++++... .+.|..+|..+
T Consensus 96 ~dg~-l~v~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 96 KDGR-LFVCYLGDFKSTGGIFAATENG-DNLQDI-IEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp TTSC-EEEEECTTSSSCCEEEEECTTS-CSCEEE-ECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS
T ss_pred CCCc-EEEEeCCCCCCCceEEEEeCCC-CEEEEE-EccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCC
Confidence 9987 77777666 6899999876 332100 00012446799999999997 7776654 35566666554
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+ .+..+..+...++.++|+|++..+.+.... ++.|.+|+..
T Consensus 172 ~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~ 212 (333)
T 2dg1_A 172 R--TVTPIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALE 212 (333)
T ss_dssp C--CEEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEEC
T ss_pred C--EEEEeecCCCcccceEECCCCCEEEEEeCC---CCeEEEEEec
Confidence 3 233333334458899999999866655332 5668888874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=101.75 Aligned_cols=237 Identities=9% Similarity=-0.025 Sum_probs=140.1
Q ss_pred eeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeecc
Q 018235 35 KVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNI 114 (359)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l 114 (359)
.+|+-... ...+++..|+....- .-.|...++.|.||+ .+|+.+....+.+...|.|+++.
T Consensus 99 ~l~~~~~~--~~~~~~lld~~~l~~----~~~~~~~~~~~SPDg-----------~~la~~~~~~G~~~~~i~v~d~~-- 159 (710)
T 2xdw_A 99 VLYVQDSL--EGEARVFLDPNILSD----DGTVALRGYAFSEDG-----------EYFAYGLSASGSDWVTIKFMKVD-- 159 (710)
T ss_dssp EEEEESST--TSCCEEEECGGGGCT----TSCEEEEEEEECTTS-----------SEEEEEEEETTCSCEEEEEEETT--
T ss_pred EEEEEcCC--CCCcEEEECHHHhcc----CCCEEEEEEEECCCC-----------CEEEEEEcCCCCceEEEEEEECC--
Confidence 45664321 233456666654321 123445678899996 36666665555555688888872
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCc-----
Q 018235 115 SGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGH----- 189 (359)
Q Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~----- 189 (359)
..........+ ..+..+.|+|++ ..|+.++.++.
T Consensus 160 ---------------------------------------tg~~~~~~~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 160 ---------------------------------------GAKELPDVLER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSD 198 (710)
T ss_dssp ---------------------------------------TTEEEEEEEEE-ECSCCEEECTTS-SEEEEEECCCCSSCCS
T ss_pred ---------------------------------------CCCCCcccccC-cccceEEEEeCC-CEEEEEEECCcccccc
Confidence 11221112222 226789999999 55555555554
Q ss_pred -----------EEEEECCCCccccccccccccCCCCCCCCCCCcEEecC--CCCceEEEEeCCCCCCeEEEEcC-----C
Q 018235 190 -----------VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDWNPITTGRLVTGDC-----N 251 (359)
Q Consensus 190 -----------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~sgs~-----d 251 (359)
|++|++.... ......+.. |...+.++.|||++. +|+.++. +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~-------------------~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQ-------------------SEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPV 258 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCG-------------------GGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSC
T ss_pred ccccccCCCCEEEEEECCCCc-------------------ccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCc
Confidence 9999997621 111233333 455678999999998 6666543 5
Q ss_pred CcEEEEecCC------CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC---CCcEEEEECCCCCC-ceEEeecCCC
Q 018235 252 SCIYLWEPAS------DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIWDTRVGKS-ALTSFKAHNA 321 (359)
Q Consensus 252 g~I~lwd~~~------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~-~~~~~~~h~~ 321 (359)
..|++||+.. +... ...+..+...+.. .|+|++..+++.... .+.|.+||+.++.. ....+..|..
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILK---WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCC---CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred cEEEEEECcccccccCCccc---eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 6899999865 2211 2445566666655 488988844444433 33699999987621 2345555544
Q ss_pred --CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 --DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 --~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+..++|++.+.+++..... ....|.+|+..+|.
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~--g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHD--VKNTLQLHDLATGA 370 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEET--TEEEEEEEETTTCC
T ss_pred CCeEEEEEEEcCCEEEEEEEEC--CEEEEEEEECCCCC
Confidence 58889999766665555431 11346667764553
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-08 Score=91.69 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=112.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+.....++.|+|++..+++++..++.|+.|+... . ...+..+...+.+|++++++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------------~--~~~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------------------Q--LSPEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------------------C--EEEEESSCSSEEEEEECTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------------------C--eEEEECCCCCcceeeECCCCc
Confidence 56677889999999954888999999999999876 2 455666677889999999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeC-----------------CCcEEEE
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV-----------------DGHIAIW 304 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~-----------------Dg~I~iw 304 (359)
++++...++.|.+||..+ ++.........+ ....+++++++|++. ++++.+. .+.|..+
T Consensus 82 -l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 82 -LIACSHGLRRLERQREPG-GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp -EEEEETTTTEEEEECSTT-CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred -EEEEecCCCeEEEEcCCC-CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEE
Confidence 777777778999999866 332210011111 124577899999998 8887431 2345555
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+.. + .+..+..+....+.++|+|++..++.+.. .+.|.+|+..
T Consensus 159 ~~~-g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~ 201 (296)
T 3e5z_A 159 APD-G--TLSAPIRDRVKPNGLAFLPSGNLLVSDTG----DNATHRYCLN 201 (296)
T ss_dssp CTT-S--CEEEEECCCSSEEEEEECTTSCEEEEETT----TTEEEEEEEC
T ss_pred CCC-C--CEEEeecCCCCCccEEECCCCCEEEEeCC----CCeEEEEEEC
Confidence 544 2 34445556677899999999998843332 5678888865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=99.70 Aligned_cols=159 Identities=10% Similarity=0.029 Sum_probs=103.1
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE--------------
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA-------------- 234 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------- 234 (359)
..+.|+|++ ..|+..+.++.|++|++... .....+..+......
T Consensus 84 ~~~~~spdg-~~l~~~~~~~~l~~~d~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 84 FGGFISTDE-RAFFYVKNELNLMKVDLETL---------------------EEQVIYTVDEEWKGYGTWVANSDCTKLVG 141 (396)
T ss_dssp TTCEECTTS-SEEEEEETTTEEEEEETTTC---------------------CEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred ccceECCCC-CEEEEEEcCCcEEEEECCCC---------------------CcEEEEecccccCCCCCEEEeccCCcccc
Confidence 347899999 67777788889999998762 222222222221111
Q ss_pred -----EEeCCCCCCeEEEE-----cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeCC-----
Q 018235 235 -----IDWNPITTGRLVTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVD----- 298 (359)
Q Consensus 235 -----l~~sp~~~~~l~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~D----- 298 (359)
+.|+|++. .++.+ ..+..|++||+.. +... .+..+...+..+.|+| ++. .|+.++.+
T Consensus 142 ~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~-g~~~----~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 142 IEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIET-GELE----VIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLV 214 (396)
T ss_dssp EEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTT-CCEE----EEEEESSCEEEEEEETTEEE-EEEEEECSCSSSC
T ss_pred ccccccccCCCCc-ceeeeeeccCCCcceEEEEECCC-CcEE----eeccCCcccccceECCCCCC-EEEEEecCCCCCC
Confidence 46788887 55443 4567899999976 4332 2335667899999999 676 56655543
Q ss_pred -CcEEEEECCCCCCceEEeecCC--CCEEEEEEcCCCCeEEEEeeec-ccceEEEEEeCcCCcc
Q 018235 299 -GHIAIWDTRVGKSALTSFKAHN--ADVNVISWNRCWLAVCWHLEVM-MEHFLFMILDCSRGEI 358 (359)
Q Consensus 299 -g~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~s~~~~~l~~~~~~~-~~d~~i~iwd~~~g~v 358 (359)
..|.+||+... ....+..+. ..+..++|+|+|+.|++..... .....|.+|+..++.+
T Consensus 215 ~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 215 DARMWLVNEDGS--NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp SCCCEEEETTSC--CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CceEEEEECCCC--ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 46888898764 233443332 2578899999999877765421 1125699999887753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-08 Score=91.97 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=115.7
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe---------cCCCCceE
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---------GGHKDEGY 233 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~ 233 (359)
.+-...+.+++.|++ .++++...++.|++|+.... ...+..+ .++.....
T Consensus 88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~--------------------~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSK--------------------EGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCS--------------------SCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCC--------------------eEEEEEecccCCCCCCccccCCCc
Confidence 344678899999999 68888889999999998652 1133333 24455688
Q ss_pred EEEeCC-CCCCeEEEEc-CCCcEEEEecCCCCcceecCcccc----------CCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 234 AIDWNP-ITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFI----------GHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 234 ~l~~sp-~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~----------~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
+|+++| .+. ++++.+ .++.|++|+. . +... ..+. ++-.....|+++|++..++++...++.|
T Consensus 147 ~ia~~~~~g~-lyv~d~~~~~~I~~~~~-~-g~~~---~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I 220 (329)
T 3fvz_A 147 DVAVEPSTGA-VFVSDGYCNSRIVQFSP-S-GKFV---TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRI 220 (329)
T ss_dssp EEEECTTTCC-EEEEECSSCCEEEEECT-T-SCEE---EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEeCCCCe-EEEEeCCCCCeEEEEcC-C-CCEE---EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEE
Confidence 999999 665 777776 6899999995 3 3333 2222 1224488999999944499999999999
Q ss_pred EEEECCCCCCceEEe--ecCCCCEEEEEEcCCCCeEEEEeee---cccceEEEEEeCcCCc
Q 018235 302 AIWDTRVGKSALTSF--KAHNADVNVISWNRCWLAVCWHLEV---MMEHFLFMILDCSRGE 357 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~---~~~d~~i~iwd~~~g~ 357 (359)
++||..++ +.+..+ ..+...+..++|+| +..+...... ......+.+|+..+|.
T Consensus 221 ~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 221 QCFKTDTK-EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp EEEETTTC-CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred EEEECCCC-cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 99999866 566666 35667889999999 4433333211 1123468888877665
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-08 Score=85.89 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=112.2
Q ss_pred CCCceeeEEEe-CCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCC
Q 018235 164 HQGCVNRIRAM-TQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPI 240 (359)
Q Consensus 164 H~~~V~~i~~~-p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~ 240 (359)
|...+..+++. +++ .++++... ++.|++|+... ..+..+. .+.....+|+++++
T Consensus 75 ~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g----------------------~~~~~~~~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYG----------------------QFVRKFGATILQHPRGVTVDNK 131 (286)
T ss_dssp CBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTS----------------------CEEEEECTTTCSCEEEEEECTT
T ss_pred cccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCC----------------------cEEEEecCccCCCceEEEEeCC
Confidence 44578889995 566 67776643 78999999433 3333442 23456889999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCcccc--CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+. ++++...++.|.+|+.. +... ..+. ++...+..|+++|++. ++++.+.++.|++||... ..+..+..
T Consensus 132 g~-l~v~~~~~~~i~~~~~~--g~~~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~~~~~~~ 202 (286)
T 1q7f_A 132 GR-IIVVECKVMRVIIFDQN--GNVL---HKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG--QYLRQIGG 202 (286)
T ss_dssp SC-EEEEETTTTEEEEECTT--SCEE---EEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC--CEEEEESC
T ss_pred CC-EEEEECCCCEEEEEcCC--CCEE---EEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC--CEEEEEcc
Confidence 87 88888888999999964 3322 2222 4556789999999998 888888899999999754 45555543
Q ss_pred C--CCCEEEEEEcCCCCeEEEEeeecccce-EEEEEeCc
Q 018235 319 H--NADVNVISWNRCWLAVCWHLEVMMEHF-LFMILDCS 354 (359)
Q Consensus 319 h--~~~V~~i~~s~~~~~l~~~~~~~~~d~-~i~iwd~~ 354 (359)
+ ...+..|+++++|.+++.+.. ++ .|.+|+..
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~~ 237 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQD 237 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECTT
T ss_pred CCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECCC
Confidence 3 357899999999987777654 44 79999864
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-07 Score=84.12 Aligned_cols=159 Identities=8% Similarity=0.024 Sum_probs=105.0
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEE
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAID 236 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~ 236 (359)
.+...+.++.++|++ .++++...+ +.|.+||... ......+. .+...+.++.
T Consensus 84 ~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~i~ 141 (333)
T 2dg1_A 84 SHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENG---------------------DNLQDIIEDLSTAYCIDDMV 141 (333)
T ss_dssp CSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTS---------------------CSCEEEECSSSSCCCEEEEE
T ss_pred CCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCC---------------------CEEEEEEccCccCCcccceE
Confidence 567889999999998 677776665 6899999876 12211221 2345788999
Q ss_pred eCCCCCCeEEEEcC------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 237 WNPITTGRLVTGDC------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 237 ~sp~~~~~l~sgs~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
++|++. ++++... .+.|..++... +... .+..+...+..++|+|++..++++.+.++.|.+||++...
T Consensus 142 ~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~~~~----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 142 FDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RTVT----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp ECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CCEE----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ECCCCC-EEEEeccccccCCCceEEEEeCCC-CEEE----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 999987 6666553 24566666543 2322 2222334578999999998455666678999999997421
Q ss_pred CceEEe--------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 311 SALTSF--------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 311 ~~~~~~--------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+..+ ..+ ..+..++++++|.+++.... ++.|.+|+..
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~----~~~v~~~d~~ 262 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYG----QGRVLVFNKR 262 (333)
T ss_dssp SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEET----TTEEEEECTT
T ss_pred cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcC----CCEEEEECCC
Confidence 222111 122 35788999999987666543 5668888874
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=7.5e-08 Score=89.10 Aligned_cols=67 Identities=7% Similarity=-0.007 Sum_probs=53.3
Q ss_pred EEecCCCCCEEEEEeC----------CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 282 LQWSPTEPDVFASCSV----------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 282 v~~sp~~~~~las~s~----------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
++|+|++..++++.+. .+.|.+||+.+. +.+.++..+. +..|+|+|+|++++... .+.|.+|
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~n-----~~~v~v~ 330 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTLD-----GGNVNVY 330 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEEC-----SSCEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEeC-----CCeEEEE
Confidence 6889998856666551 347999999997 7777887776 99999999999776543 1779999
Q ss_pred eCcCC
Q 018235 352 DCSRG 356 (359)
Q Consensus 352 d~~~g 356 (359)
|..++
T Consensus 331 D~~t~ 335 (361)
T 2oiz_A 331 DISQP 335 (361)
T ss_dssp ECSSS
T ss_pred ECCCC
Confidence 99988
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.6e-08 Score=85.03 Aligned_cols=168 Identities=12% Similarity=-0.019 Sum_probs=118.9
Q ss_pred CCeEEEEEecCC-CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-Cc
Q 018235 154 TPILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~ 231 (359)
+..+.-++..+. ..++.+.+.|++ ++++ +.++.|+.||. . ++.+..+..+. ..
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~---------------------G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-D---------------------GRELWNIAAPAGCE 78 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-T---------------------SCEEEEEECCTTCE
T ss_pred CCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-C---------------------CCEEEEEcCCCCcc
Confidence 444545555555 578999999999 7777 34678999998 4 45666776653 47
Q ss_pred eEEEEeCCCCCCeEEEEcC-CCcEEEEecCCCCcceecCccc----cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 232 GYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPF----IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~----~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
++++.+.+++. +|++.+. ++.|..++. . ++.+.. ..+ .++......+++.+++. ++++.+.++.|..||.
T Consensus 79 ~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~-Gk~l~~-~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 79 MQTARILPDGN-ALVAWCGHPSTILEVNM-K-GEVLSK-TEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAP 153 (276)
T ss_dssp EEEEEECTTSC-EEEEEESTTEEEEEECT-T-SCEEEE-EEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECT
T ss_pred ccccEECCCCC-EEEEecCCCCEEEEEeC-C-CCEEEE-EeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECC
Confidence 88999999998 8877766 677777775 3 443210 111 11222445567889998 9999999999999998
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. + +.+.++... ..+.++...+++.+++.+.. ++.|..++..+|++
T Consensus 154 ~-G-~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 154 N-G-QLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRI 198 (276)
T ss_dssp T-S-CEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCE
T ss_pred C-C-CEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcE
Confidence 7 6 777777654 34566788899998887765 56788888887764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=92.92 Aligned_cols=144 Identities=8% Similarity=-0.005 Sum_probs=87.8
Q ss_pred eeeEEEeCCCCcEEEEEeC--------------------------CCcEEEEECCCCccccccccccccCCCCCCCCCCC
Q 018235 168 VNRIRAMTQNPHICASWAD--------------------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~--------------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (359)
+..++|+|++..++++... ...|++||+.. ...
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~---------------------~~~ 164 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---------------------EEV 164 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT---------------------TEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC---------------------CeE
Confidence 9999999999444444322 25688888865 222
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCC-------cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNS-------CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg-------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
+..+.. . .+..++|+|++ +++++..++ ...||.+. .+.. ..+..+ ..+..+ +|++. .|+.
T Consensus 165 ~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~~~~----~~l~~~-~~~~~~--spdg~-~l~~ 231 (347)
T 2gop_A 165 IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-DGKE----EKMFEK-VSFYAV--DSDGE-RILL 231 (347)
T ss_dssp EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-TTEE----EEEEEE-ESEEEE--EECSS-CEEE
T ss_pred EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC-CCce----EEeccC-cceeeE--CCCCC-EEEE
Confidence 123333 2 67789999998 666665442 44555544 3443 233334 445444 99999 5555
Q ss_pred EeCC--------CcEEEEECCCCCCceEEe-ecCCCCEEE-EEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 295 CSVD--------GHIAIWDTRVGKSALTSF-KAHNADVNV-ISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 295 ~s~D--------g~I~iwD~r~~~~~~~~~-~~h~~~V~~-i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++.+ ..|.+|| ++ . ...+ ..|...+.. +.|+ ++ +++.... ++.+++| ...|
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~-~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~----~~~~~l~-~~~g 292 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GK-E-VMGILDEVDRGVGQAKIKD-GK-VYFTLFE----EGSVNLY-IWDG 292 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SS-C-EEESSTTCCSEEEEEEEET-TE-EEEEEEE----TTEEEEE-EESS
T ss_pred EEccccCCccccceEEEEC--CC-c-eEeccccCCcccCCccEEc-Cc-EEEEEec----CCcEEEE-EcCC
Confidence 5533 4688888 33 3 3333 455677886 9999 87 5555544 5677888 6544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-08 Score=101.16 Aligned_cols=167 Identities=8% Similarity=-0.054 Sum_probs=104.3
Q ss_pred cCCCceeeEEEeCCCCcEEEE----EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc-E-EecCCCCceEEEE
Q 018235 163 AHQGCVNRIRAMTQNPHICAS----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-V-KFGGHKDEGYAID 236 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~l~ 236 (359)
+|...+..++|+|+|..++++ |+++.+|++||+.. ++.+ . .+... ...+++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~~~~~--~~~~~~ 174 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS---------------------GEWSKVDVIEGG--KYATPK 174 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT---------------------CCBCSSCCBSCC--TTCCCE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC---------------------CCCcCCcccCcc--cccceE
Confidence 466679999999999444433 33446899999987 2221 0 11111 125799
Q ss_pred eCCCCCCeEEEEcCCCc-------------EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-C--c
Q 018235 237 WNPITTGRLVTGDCNSC-------------IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-G--H 300 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~-------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g--~ 300 (359)
|+|+++ .|+.++.+.. |++|++.++............|...+..+.|||+|..++++.... + .
T Consensus 175 wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 175 WTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp ECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 999998 7888877766 999999764311100122334556889999999999444444333 2 5
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|.+|+..++ ....+..+...+....| +++. +++.......+..|.+|+..++.
T Consensus 254 l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 254 VYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 666665443 45556556666666667 4566 44443322235788999987654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-08 Score=97.78 Aligned_cols=175 Identities=7% Similarity=-0.054 Sum_probs=115.7
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCC-C--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADT-G--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d-g--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
.+......|...+..+.|+|++..++++.... + .|++|+... .....+..+...+
T Consensus 217 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~----------------------~~~~~l~~~~~~~ 274 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE----------------------KDFRLLVKGVGAK 274 (695)
T ss_dssp EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC----------------------SSCEEEEECSSCC
T ss_pred eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC----------------------CceEEeecCCCce
Confidence 34444445777889999999996555554443 3 455554322 2334455555556
Q ss_pred EEEEeCCCCCCeEEEEc---CCCcEEEEecCCCCcceecCccccCC--CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 233 YAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGH--SASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
....| +++. ++++.. .++.|.+|++.++.... ...+..| ...+.+++|+ .+. ++++...|+..+||.+.
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVPEDSSASLLSVSIV-GGH-LSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG--CEEEECCCSSCEEEEEEEE-TTE-EEEEEEETTEEEEEEEE
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC--CeEEecCCCCCeEEEEEEE-CCE-EEEEEEECCEEEEEEEe
Confidence 66667 5666 666655 35789999987643200 1223333 4568889998 444 89999999998888665
Q ss_pred CCCCceEEeecC-CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 308 VGKSALTSFKAH-NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 308 ~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
........+..+ ...|..++++|++..+++...+...+..|.+|+..+++.
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 221445555544 566888899999998888777777788999999887753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-07 Score=87.91 Aligned_cols=171 Identities=11% Similarity=0.023 Sum_probs=115.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC----
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN---- 238 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---- 238 (359)
.....+..+.++|++ .++++++.++.|.+||+... ..+.+..+... ..-..++|+
T Consensus 194 ~~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~-------------------t~~~v~~i~~G-~~P~~ia~s~~~~ 252 (567)
T 1qks_A 194 DTGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMK-------------------EPTTVAEIKIG-SEARSIETSKMEG 252 (567)
T ss_dssp ECSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSS-------------------SCCEEEEEECC-SEEEEEEECCSTT
T ss_pred eCCCCccceEECCCC-CEEEEEcCCCeEEEEECCCC-------------------CCcEeEEEecC-CCCceeEEccccC
Confidence 444467789999999 56666788999999999510 13444555432 245689999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCccee--cCccc--c---CCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPF--I---GHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~--~---~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
|+++..+++...+++|.++|..+ .+.+. ..... . .|. ..+..+..++.++.++++...+|.|.++|.....
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 69984444555568999999876 33321 00110 0 122 2678899999888677777888999999998752
Q ss_pred CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 311 SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...............+.|+|++++++..... .+.|.++|..++++
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl 376 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKL 376 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcE
Confidence 2221122334457788999999998877643 67789999988764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-07 Score=82.48 Aligned_cols=159 Identities=8% Similarity=-0.098 Sum_probs=111.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..++.+.+.+++ .++++...++.|.+|+... ...............+|++++++. ++
T Consensus 108 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~p~~i~~~~~g~-l~ 164 (270)
T 1rwi_B 108 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS---------------------KTQTVLPFTGLNDPDGVAVDNSGN-VY 164 (270)
T ss_dssp SSEEEEEECTTC-CEEEEEGGGTEEEEECTTC---------------------CSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred CCCcceEECCCC-CEEEEECCCCEEEEEECCC---------------------ceeEeeccccCCCceeEEEeCCCC-EE
Confidence 568899999988 6888777788999996544 111111112223567899999987 78
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
++...++.|.+|+.... ... .....+...+.+|++++++. ++++...++.|.+||.... ........+-..+.+
T Consensus 165 v~~~~~~~i~~~~~~~~-~~~---~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESN-NQV---VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLA 238 (270)
T ss_dssp EEEGGGTEEEEECTTTC-CEE---ECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCS-CCEECCCCSCSCEEE
T ss_pred EEECCCCEEEEEecCCC-ceE---eecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCC-cceeeccCCCCCcee
Confidence 87777889999998653 222 11122336789999999996 8888888999999998764 222211233356899
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+++++|.+++.+.. ++.|++++....+
T Consensus 239 i~~~~~g~l~v~~~~----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 239 VAVDSDRTVYVADRG----NDRVVKLTSLEHH 266 (270)
T ss_dssp EEECTTCCEEEEEGG----GTEEEEECCCGGG
T ss_pred EEECCCCCEEEEECC----CCEEEEEcCCCcc
Confidence 999999986666544 7789999876543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-07 Score=84.11 Aligned_cols=159 Identities=9% Similarity=0.063 Sum_probs=106.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCC---------------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADT---------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
..++.+++.|++ .+++|-+.. +.-.||.+.. . ..+..+..+..
T Consensus 115 ~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~--------------------~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 115 NSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP--------------------D-GTLSAPIRDRV 172 (296)
T ss_dssp CCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT--------------------T-SCEEEEECCCS
T ss_pred CCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC--------------------C-CCEEEeecCCC
Confidence 356789999999 677763211 1124444443 1 12233445556
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc-eecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
...+++|+|++. .|++.+.++.|.+|++...+.. .. ...+..+...+..+++++++. ++++. ++.|.+||.. +
T Consensus 173 ~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 173 KPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQ-GVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp SEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEE-EEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTT-S
T ss_pred CCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCC-CeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCC-C
Confidence 778999999998 6688888899999999733443 10 122233455677899999998 76666 7899999987 3
Q ss_pred CCceEEeecCCCCEEEEEE-cCCCCeEEEEeeecccceEEEEEeCcCCccC
Q 018235 310 KSALTSFKAHNADVNVISW-NRCWLAVCWHLEVMMEHFLFMILDCSRGEIR 359 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~-s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v~ 359 (359)
+.+..+..+.. +++++| .|++..|..+.. ++ +..++..+..++
T Consensus 247 -~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~----~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 247 -DELGRVLTPQT-TSNLCFGGPEGRTLYMTVS----TE-FWSIETNVRGLE 290 (296)
T ss_dssp -CEEEEEECSSC-CCEEEEESTTSCEEEEEET----TE-EEEEECSCCBCC
T ss_pred -CEEEEEECCCC-ceeEEEECCCCCEEEEEcC----Ce-EEEEEccccccc
Confidence 56667776766 899999 588887776654 44 344566666553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-07 Score=79.81 Aligned_cols=158 Identities=6% Similarity=-0.096 Sum_probs=108.6
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~ 242 (359)
+...+..+++.+++ .++++.. ++.|.+||.... ....+. .......+|++++++.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~----------------------~~~~~~~~~~~~p~~i~~~~~g~ 120 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSN----------------------NQTVLPFDGLNYPEGLAVDTQGA 120 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCS----------------------CCEECCCCSCSSEEEEEECTTCC
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCc----------------------eEeeeecCCcCCCcceEECCCCC
Confidence 34567889999988 5766666 889999997651 122222 2224678999999987
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
++++...++.|.+|+.... ... .........+.+++++|++. ++++...++.|.+||.... ........+...
T Consensus 121 -l~v~~~~~~~i~~~~~~~~-~~~---~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 193 (270)
T 1rwi_B 121 -VYVADRGNNRVVKLAAGSK-TQT---VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN-NQVVLPFTDITA 193 (270)
T ss_dssp -EEEEEGGGTEEEEECTTCC-SCE---ECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTC-CEEECCCSSCCS
T ss_pred -EEEEECCCCEEEEEECCCc-eeE---eeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCC-ceEeecccCCCC
Confidence 7787777889999976542 211 11122334678899999998 8888888899999998875 322222233366
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..|+++++|.+++.+.. ++.|.+|+....
T Consensus 194 p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~ 223 (270)
T 1rwi_B 194 PWGIAVDEAGTVYVTEHN----TNQVVKLLAGST 223 (270)
T ss_dssp EEEEEECTTCCEEEEETT----TSCEEEECTTCS
T ss_pred ceEEEECCCCCEEEEECC----CCcEEEEcCCCC
Confidence 899999999966655543 556888887543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-09 Score=96.70 Aligned_cols=159 Identities=8% Similarity=-0.022 Sum_probs=100.5
Q ss_pred eeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc-eEEEEeCCCCCCe
Q 018235 168 VNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE-GYAIDWNPITTGR 244 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~ 244 (359)
+..++|+|++..++++...+| .|.+||+.. ... ..+..+... ...+.|+|++. +
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------------------~~~-~~l~~~~~~~~~~~~~spdg~-~ 94 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET---------------------QQA-VQLTEGKGDNTFGGFISTDER-A 94 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------TEE-EECCCSSCBCTTTCEECTTSS-E
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC---------------------CcE-EEeecCCCCccccceECCCCC-E
Confidence 788999999955555544444 677778765 222 222222223 33488999998 8
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE-------------------EEecCCCCCEEEEE-----eCCCc
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-------------------LQWSPTEPDVFASC-----SVDGH 300 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-------------------v~~sp~~~~~las~-----s~Dg~ 300 (359)
|+.++.++.|++|++.. +... ..+..+.....+ +.|+|++. .++.+ ..+..
T Consensus 95 l~~~~~~~~l~~~d~~~-~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 95 FFYVKNELNLMKVDLET-LEEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCR 169 (396)
T ss_dssp EEEEETTTEEEEEETTT-CCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEE
T ss_pred EEEEEcCCcEEEEECCC-CCcE---EEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcce
Confidence 98888888999999976 3322 122223332223 35677776 44332 45678
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcC-CCCeEEEEeeecccc---eEEEEEeCcCCc
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNR-CWLAVCWHLEVMMEH---FLFMILDCSRGE 357 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~~~~~d---~~i~iwd~~~g~ 357 (359)
|.+||+.++ . ...+..+...+..+.|+| ++..+++.... ..+ ..|.+|+...+.
T Consensus 170 l~~~d~~~g-~-~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 170 LIKVDIETG-E-LEVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp EEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCC
T ss_pred EEEEECCCC-c-EEeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCc
Confidence 999999886 3 334445677899999999 78877766431 111 457778876543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-07 Score=90.17 Aligned_cols=175 Identities=7% Similarity=0.005 Sum_probs=113.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeC----CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
+......|...+..+.|+|+|..++++... ...|++||+.... ..+...+..+....
T Consensus 259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-------------------IGPVTALIPDLKAQ 319 (741)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-------------------ECCCEEEECSSSSC
T ss_pred EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-------------------CcccEEecCCCCce
Confidence 333333444568899999999544444432 3489999987610 02134455555444
Q ss_pred EEEEeCCCCCCeEEEEcC----CCcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 233 YAIDWNPITTGRLVTGDC----NSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~----dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.... +|++. .|+..+. ++.|.+|++..+ ..+. ..+..+...+.+++|+ .+. ++++...|+..+||.+.
T Consensus 320 ~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~---~l~~~~~~~l~~~~~~-~~~-lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 320 WDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFD---TVVPESKDNLESVGIA-GNR-LFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEE---EEECCCSSEEEEEEEE-BTE-EEEEEEETTEEEEEEEE
T ss_pred EEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccE---EEecCCCCeEEEEEEE-CCE-EEEEEEECCEEEEEEEe
Confidence 4443 47887 6666654 345999998763 2332 2233445567788887 344 88999999988887654
Q ss_pred CCCCceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
........+.. +...|..++|+|++..+++...+...+..+.+|+..+++
T Consensus 393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 22144555543 356789999999998888777666678899999988765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=86.48 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=91.7
Q ss_pred CceeeEEEeCCCCcEEEEEeCC---Cc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADT---GH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---g~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+.+..++|+|++ ..||..+.+ +. |.+|++.. .........+ . +.++.|+|+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~---------------------g~~~~l~~~~-~-~~~~~wspd 114 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLET---------------------LSSKKILEAK-N-IRSLEWNED 114 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTT---------------------TEEEEEEEES-E-EEEEEECTT
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCC---------------------CceEEEEcCC-C-ccceeECCC
Confidence 568889999999 455544432 34 66777765 2333333222 3 889999999
Q ss_pred CCCeEEEEcC---------------------------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEE
Q 018235 241 TTGRLVTGDC---------------------------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (359)
Q Consensus 241 ~~~~l~sgs~---------------------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (359)
+. .|+.++. ...|++|++.. +... ..+.. . .+..++|+|++ +++
T Consensus 115 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-~~~~---~~l~~-~-~~~~~~~spdg--~~~ 185 (347)
T 2gop_A 115 SR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-EEVI---EEFEK-P-RFSSGIWHRDK--IVV 185 (347)
T ss_dssp SS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTT-TEEE---EEEEE-E-TTCEEEEETTE--EEE
T ss_pred CC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC-CeEE---eeecC-C-CcccccCCCCe--EEE
Confidence 98 7776653 25689999876 4431 12333 3 78899999999 666
Q ss_pred EEeCCC-------cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecc----cceEEEEEe
Q 018235 294 SCSVDG-------HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMM----EHFLFMILD 352 (359)
Q Consensus 294 s~s~Dg-------~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~----~d~~i~iwd 352 (359)
+++.++ ...||.+.+ .....+..+ ..+.. ++|+|+.|++...... ....|.+|+
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~--~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWED--GKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEET--TEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred EEecccccccccccccEEEeCC--CceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC
Confidence 665442 344444443 334445444 44554 4999998887654211 134677777
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-06 Score=75.77 Aligned_cols=165 Identities=7% Similarity=-0.039 Sum_probs=112.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..+...+.++.+.+++ .++++...++.|.+||.... .....+..+...+.+|+++
T Consensus 8 ~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~~---------------------~~~~~~~~~~~~~~~i~~~ 65 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKG-KVWITQHKANMISCINLDGK---------------------ITEYPLPTPDAKVMCLTIS 65 (299)
T ss_dssp EECCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC---------------------EEEEECSSTTCCEEEEEEC
T ss_pred EcCCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCCCC---------------------eEEecCCcccCceeeEEEC
Confidence 3444556789999999999 67777666789999987631 0011122234578899999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+++. ++++...++.|..|+.. +.... ..+......+.+++++|++. ++++...++.|.+||. .+.........
T Consensus 66 ~~g~-l~v~~~~~~~i~~~~~~--g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 66 SDGE-VWFTENAANKIGRITKK--GIIKE--YTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp TTSC-EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCC-EEEeCCCCCeEEEECCC--CcEEE--EeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCC
Confidence 9987 77777778899999975 22210 11223456789999999987 8888777889999998 44122222233
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+...++.+++.+++.+.+.... .+.|..|+. ++.
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~ 172 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQ----NNAIGRITE-SGD 172 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETT----TTEEEEECT-TCC
T ss_pred CCCCCceEEEcCCCCEEEEeCC----CCEEEEEcC-CCc
Confidence 4567899999999976665532 455777776 443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=93.78 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=101.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
|...+..++|+|+|..++.+.+..| +|++||+.. +..+.. ..+...+.+++|+|
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t---------------------g~~~~~-~~~~~~~~~~~wsp 218 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD---------------------GKPLAD-ELKWVKFSGLAWLG 218 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT---------------------CCEEEE-EEEEEESCCCEEST
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------CCCCCc-cCCCceeccEEEEC
Confidence 4457889999999944444443334 599999987 232221 11111235789999
Q ss_pred CCCCeEEEEcCCCc--------------EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-----Cc
Q 018235 240 ITTGRLVTGDCNSC--------------IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GH 300 (359)
Q Consensus 240 ~~~~~l~sgs~dg~--------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~ 300 (359)
+ . .|+.++.++. |++|++.++............+...+..+.|||+|. .|+..+.+ ..
T Consensus 219 D-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 219 N-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNT 295 (741)
T ss_dssp T-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCE
T ss_pred C-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcce
Confidence 9 7 6666665544 889998653211000011223334588999999999 55555543 37
Q ss_pred EEEEECCCCCCc-eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 301 IAIWDTRVGKSA-LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 301 I~iwD~r~~~~~-~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|++||+.++... ...+..+...+.... .|++..|++..........|.+|+..++
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 999999875113 455655555555543 4888887776543333567888887653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.8e-07 Score=81.98 Aligned_cols=143 Identities=8% Similarity=0.000 Sum_probs=105.1
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-CceEEEEeCCCCCCeEEEEcCCCcEEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLW 257 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~sgs~dg~I~lw 257 (359)
++|++++.++.|++||..+ ++.+..+..+. ..++++.++|++. +|++ .++.|..|
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~ 61 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------------KEIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMI 61 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------------TEEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEE
T ss_pred cEEEeeCCCCEEEEEECCC---------------------CeEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEE
Confidence 6899999999999999866 56777887766 4788999999997 7773 47789999
Q ss_pred ecCCCCcceecCccccCC-CCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEEeec------CCCCEEEEEEc
Q 018235 258 EPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKA------HNADVNVISWN 329 (359)
Q Consensus 258 d~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~------h~~~V~~i~~s 329 (359)
|. + ++.+ ..+..+ ...+.++++.|++. ++++.+. ++.|..+|. .+ +.+..+.. +......+++.
T Consensus 62 d~-~-G~~~---W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~G-k~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 62 TR-D-GREL---WNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KG-EVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp CT-T-SCEE---EEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TS-CEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred CC-C-CCEE---EEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CC-CEEEEEeccCCCCcccccccCceEC
Confidence 98 5 4433 334433 35788999999999 7777776 778888875 44 55555531 11234556788
Q ss_pred CCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++|.+++.... ++.|..||.. |++
T Consensus 134 ~~G~~lv~~~~----~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 134 KKGNYLVPLFA----TSEVREIAPN-GQL 157 (276)
T ss_dssp TTSCEEEEETT----TTEEEEECTT-SCE
T ss_pred CCCCEEEEecC----CCEEEEECCC-CCE
Confidence 99998877654 6788899887 653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-06 Score=74.01 Aligned_cols=159 Identities=7% Similarity=-0.060 Sum_probs=109.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+...+..+.+.+++ .++++...++.|..|+.... .....+......+.+|.+.+++.
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~---------------------~~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGI---------------------IKEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSC---------------------EEEEECSSTTCCEEEEEECTTSC-
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCc---------------------EEEEeCCCcCCCceeeEECCCCC-
Confidence 45778999999988 67777677888999987531 00111222345688999999886
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE-EeecCCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~~ 322 (359)
++++...++.|.+|+. . +.... .....+...+..++++|++. ++++...++.|.+||. ++ .... .+..+...
T Consensus 112 l~v~~~~~~~i~~~d~-~-g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-D-GKIRE--YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SG-DITEFKIPTPASG 184 (299)
T ss_dssp EEEEETTTTEEEEECT-T-CCEEE--EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TC-CEEEEECSSTTCC
T ss_pred EEEEecCCceEEEECC-C-CCEEE--ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CC-cEEEeeCCCCCCc
Confidence 7777777889999998 4 33221 12223456789999999997 8887777889999998 54 3222 12334566
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..+++.+++.+.+.... .+.|.+|+. ++.
T Consensus 185 ~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEII----GNKIGRITT-SGE 214 (299)
T ss_dssp EEEEEECTTSSEEEEETT----TTEEEEECT-TCC
T ss_pred ceeEEECCCCCEEEEccC----CceEEEECC-CCc
Confidence 889999999986655533 456777877 543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-05 Score=79.21 Aligned_cols=226 Identities=11% Similarity=0.048 Sum_probs=144.6
Q ss_pred CCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCC
Q 018235 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (359)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~ 124 (359)
..+....+|......+.++.+..-.-.+.+-||. .++.++. .++.|.++++..
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-----------r~lyv~~-----~dg~V~viD~~~----------- 227 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-----------RYLFVIG-----RDGKVNMIDLWM----------- 227 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-----------CEEEEEE-----TTSEEEEEETTS-----------
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-----------CEEEEEc-----CCCeEEEEECCC-----------
Confidence 4567778888777778777777655567777775 3444454 356888887620
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEe----CCCCcEEEEEeCCCcEEEEECCCCcc
Q 018235 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM----TQNPHICASWADTGHVQVWDLRSHLN 200 (359)
Q Consensus 125 ~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~----p~~~~~lat~s~dg~V~iwd~~~~~~ 200 (359)
.......+ +........+.|+ |++..++++....++|.|+|..+
T Consensus 228 ----------------------------~t~~~v~~-i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t--- 275 (567)
T 1qks_A 228 ----------------------------KEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET--- 275 (567)
T ss_dssp ----------------------------SSCCEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---
T ss_pred ----------------------------CCCcEeEE-EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---
Confidence 02222222 2334456789999 68866677777789999999766
Q ss_pred ccccccccccCCCCCCCCCCCcEEecC----------CCC-ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecC
Q 018235 201 ALAESETIVGQGAPQVSNQSPLVKFGG----------HKD-EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269 (359)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~ 269 (359)
.+++.++.. |.. .+.++..++.++..+++....|.|.++|........ .
T Consensus 276 ------------------~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v 335 (567)
T 1qks_A 276 ------------------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--T 335 (567)
T ss_dssp ------------------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--E
T ss_pred ------------------CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--e
Confidence 333333321 212 567888898877567777778999999986632222 1
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec-----CCC-CEEEEEEcCCCCeEEEEeeecc
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-----HNA-DVNVISWNRCWLAVCWHLEVMM 343 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-----h~~-~V~~i~~s~~~~~l~~~~~~~~ 343 (359)
..+ .......++.|+|+++.+++++..++.|.++|+.++ +.+..+.. |.+ .++ + ++|++..+..... .
T Consensus 336 ~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~--~ 409 (567)
T 1qks_A 336 TEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSH--M 409 (567)
T ss_dssp EEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEB--S
T ss_pred eee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCC--C
Confidence 122 234457789999999966777778899999999987 54444433 432 233 2 5787554433221 1
Q ss_pred cceEEEEEeCcC
Q 018235 344 EHFLFMILDCSR 355 (359)
Q Consensus 344 ~d~~i~iwd~~~ 355 (359)
.++.|.+++...
T Consensus 410 g~~~Vsvid~~~ 421 (567)
T 1qks_A 410 GDDSVALIGTDP 421 (567)
T ss_dssp SSSEEEEEECCT
T ss_pred CCCeEEEecCCC
Confidence 146788998765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.2e-06 Score=76.69 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=100.7
Q ss_pred EEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEe----cCCCCceEEEEeCCCCCCe
Q 018235 171 IRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF----GGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 171 i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~sp~~~~~ 244 (359)
++|++++ ..++.+..++ .|.+|+.... .....+ ........+++++|.+. .
T Consensus 176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~---------------------~~~~~~g~~~~~~~~~p~~iav~p~~g-~ 232 (409)
T 3hrp_A 176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASG---------------------WAPTRIGQLGSTFSGKIGAVALDETEE-W 232 (409)
T ss_dssp CEECTTS-SEEEEEBSSTTCEEEEEEGGGT---------------------TCEEEEEECCTTSCSCCCBCEECTTSS-E
T ss_pred eeEecCC-CcEEEEecCCCceEEEEEcCCC---------------------ceeEEeeeccchhcCCcEEEEEeCCCC-e
Confidence 8999998 5555555544 7888887641 111222 11334567899999554 5
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCe--EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC--
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV--EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-- 320 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V--~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-- 320 (359)
|+.+..++.|+.||+..............++...- ..++|+|.+..++++...++.|+.|+.... +..+.++.
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~ 309 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQ 309 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTC
T ss_pred EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCC
Confidence 55577789999999876322111000012222222 389999965548888888999999987652 33333332
Q ss_pred -------------CCEEEEEEcCCCCeEEEEe-eecccceEEEEEeCcCCcc
Q 018235 321 -------------ADVNVISWNRCWLAVCWHL-EVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 321 -------------~~V~~i~~s~~~~~l~~~~-~~~~~d~~i~iwd~~~g~v 358 (359)
...+.|+|+++|.+++.+. . ++.|+.|+...|.+
T Consensus 310 ~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~----~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 310 KTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK----GYCLRKLDILDGYV 357 (409)
T ss_dssp CSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT----TCEEEEEETTTTEE
T ss_pred CCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC----CCEEEEEECCCCEE
Confidence 3478999999999776665 4 67899998665543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-06 Score=77.08 Aligned_cols=159 Identities=6% Similarity=-0.079 Sum_probs=105.7
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-----CceEEEEe
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAIDW 237 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~ 237 (359)
........+++++++ .++++...++.|.+||.... +....+.... .....|++
T Consensus 81 ~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~---------------------~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTY---------------------EITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTT---------------------EEEEEEECTTCCTTTCBCCCEEE
T ss_pred CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCC---------------------eEEEEEEcCCccccCCCcceEEE
Confidence 445678899998888 77777668899999998862 2222222111 13445666
Q ss_pred CCCCCCeEEEEc-CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC----------CcEEEEEC
Q 018235 238 NPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----------GHIAIWDT 306 (359)
Q Consensus 238 sp~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----------g~I~iwD~ 306 (359)
..+. ++++.. .++.|.++|+.+ ++.. ..+.. ......+.++|++. +++++..+ +.|.++|.
T Consensus 139 -~~~~-lyv~~~~~~~~v~viD~~t-~~~~---~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 139 -YGKY-VYVNCWSYQNRILKIDTET-DKVV---DELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp -ETTE-EEEEECTTCCEEEEEETTT-TEEE---EEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred -ECCE-EEEEcCCCCCEEEEEECCC-CeEE---EEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEEC
Confidence 2332 444443 488999999987 4433 22222 23456789999998 77777655 78999999
Q ss_pred CCCCCceEEeecC-CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 307 RVGKSALTSFKAH-NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 307 r~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+. +....+... ....+.++|+|++..+.+... .+.+||..++++
T Consensus 211 ~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 211 ETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN------DIWRMPVEADRV 256 (328)
T ss_dssp TTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS------SEEEEETTCSSC
T ss_pred CCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc------EEEEEECCCCce
Confidence 886 544455422 346899999999988776532 477899887664
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-06 Score=85.23 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=137.8
Q ss_pred CCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCC
Q 018235 44 LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (359)
Q Consensus 44 ~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~ 123 (359)
+..++++.+|+....-=+.+ .--++.|-||+ .+|+.+....+.+...|+|+++..
T Consensus 110 ~~~~~~vllD~n~la~~~~~----~l~~~~~SpDg-----------~~lAy~~~~~G~~~~~i~v~dl~t---------- 164 (693)
T 3iuj_A 110 EGKPAEVFLDPNTLSPDGTT----ALDQLSFSRDG-----------RILAYSLSLAGSDWREIHLMDVES---------- 164 (693)
T ss_dssp TTSCCEEEECGGGGSTTSCC----EEEEEEECTTS-----------SEEEEEEECSSCCEEEEEEEETTT----------
T ss_pred CCCCcEEEEehhhccCCCcE----EEEEEEECCCC-----------CEEEEEEecCCCceEEEEEEECCC----------
Confidence 45677888888766443433 23356788986 467777766666667888888730
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCC-------------CcE
Q 018235 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT-------------GHV 190 (359)
Q Consensus 124 ~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d-------------g~V 190 (359)
...+..... ......++|+ ++..++. ++.+ ..|
T Consensus 165 ------------------------------g~~~~~~~~--~~k~~~~~Ws-Dg~~l~y-~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 165 ------------------------------KQPLETPLK--DVKFSGISWL-GNEGFFY-SSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp ------------------------------CSEEEEEEE--EEESCCCEEE-TTTEEEE-EESSCCC-------CCCCEE
T ss_pred ------------------------------CCCCccccC--CceeccEEEe-CCCEEEE-EEecCcccccccccCCCcEE
Confidence 111111111 1113567899 8854444 4444 348
Q ss_pred EEEECCCCccccccccccccCCCCCCCCCCCcEEec--C-CCCceEEEEeCCCCCCeEEEEcC---CCcEEEEecCCCCc
Q 018235 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--G-HKDEGYAIDWNPITTGRLVTGDC---NSCIYLWEPASDAT 264 (359)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~~l~sgs~---dg~I~lwd~~~~~~ 264 (359)
++|++.... ......+. . |.....++.|+|+++.++++.+. .+.|+++|+..+..
T Consensus 211 ~~~~lgt~~-------------------~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 211 YFHRLGTAQ-------------------EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp EEEETTSCG-------------------GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EEEECCCCc-------------------ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 999987621 12223333 2 34457789999999844444432 35799999876432
Q ss_pred ceecCccccCCCCCeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCCC-ceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKS-ALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 265 ~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~-~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.. ..+..+....... |++.+..+++....+ +.|.++|+.++.. ....+..|...+. .|++++..|++...
T Consensus 272 ~~---~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 272 PL---LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp CC---EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred ce---EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence 22 3455666666555 667776466665543 6799999987621 1345666666665 89999998887765
Q ss_pred ecccceEEEEEeCcCC
Q 018235 341 VMMEHFLFMILDCSRG 356 (359)
Q Consensus 341 ~~~~d~~i~iwd~~~g 356 (359)
... ...|.+|+...+
T Consensus 346 ~~g-~~~l~~~d~~g~ 360 (693)
T 3iuj_A 346 VDA-TARVEQFDYEGK 360 (693)
T ss_dssp ETT-EEEEEEECTTSC
T ss_pred ECC-eeEEEEEECCCC
Confidence 311 235788877644
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-06 Score=76.21 Aligned_cols=161 Identities=6% Similarity=0.026 Sum_probs=106.3
Q ss_pred CceeeEEEeCCCCcEEEEEeCC---------------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADT---------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
..++.+.+.+++ .++++...+ +.|..|+... .. ..+..+..
T Consensus 117 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----------------------~~-~~~~~~~~ 172 (314)
T 1pjx_A 117 QGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----------------------QM-IQVDTAFQ 172 (314)
T ss_dssp BCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----------------------CE-EEEEEEES
T ss_pred cCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCCC----------------------CE-EEeccCCC
Confidence 357899999998 666665544 4555555432 11 11222233
Q ss_pred ceEEEEeC----CCCCCeEEEEcCCCcEEEEecCCCCccee--cCccccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 231 EGYAIDWN----PITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 231 ~v~~l~~s----p~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
...+++|+ |++..++++...++.|.+|++...+.... ....+.++. ..+..+++++++. ++++...++.|.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEE
Confidence 46789999 98863456666788999999762232110 012233444 5688999999997 8888888899999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
||..++ ..+..+..+...+.+++|++++..|..+... ++.|..|+...
T Consensus 252 ~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQR 299 (314)
T ss_dssp ECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECSS
T ss_pred EcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCCC
Confidence 999865 4555666666789999999999855544331 45677787654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-06 Score=78.97 Aligned_cols=90 Identities=7% Similarity=0.103 Sum_probs=66.2
Q ss_pred EEeCCCCCCeEEEEcC-----------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 235 IDWNPITTGRLVTGDC-----------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~-----------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
++++|++. +++.+.. .+.|.+||+.+ .+.+ ..+..+. +.+++|+|+++ +|++++. ++|.+
T Consensus 259 ~a~~~dg~-~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v---~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v 329 (361)
T 2oiz_A 259 VGLHRASG-RMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRV---ARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNV 329 (361)
T ss_dssp EEEETTTT-EEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEE---EEEECTT--CCEEEEETTTT-EEEEECS-SCEEE
T ss_pred EEEecCCC-eEEEEEccCCCcccccCCCceEEEEECCC-CcEE---EEEecCC--eeEEEECCCCC-EEEEeCC-CeEEE
Confidence 67888876 5444321 34799999987 4443 4555555 99999999999 7766666 99999
Q ss_pred EECCCCC-CceEEeecCCCCEEEEEEcCCCC
Q 018235 304 WDTRVGK-SALTSFKAHNADVNVISWNRCWL 333 (359)
Q Consensus 304 wD~r~~~-~~~~~~~~h~~~V~~i~~s~~~~ 333 (359)
||..++. +.+.++..+....+.+.++|+|.
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999851 34445556777889999999985
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-07 Score=88.97 Aligned_cols=168 Identities=8% Similarity=0.023 Sum_probs=104.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeC----CCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeC
Q 018235 164 HQGCVNRIRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWN 238 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 238 (359)
|...+..++|+|++..++.+.+. ...|++||+.+ ++.+. .+.+. ...+++|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~~~~--k~~~~~Ws 183 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------KQPLETPLKDV--KFSGISWL 183 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------CSEEEEEEEEE--ESCCCEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------CCCCccccCCc--eeccEEEe
Confidence 55678889999999544444433 35799999987 23222 12111 12478999
Q ss_pred CCCCCeEEEEcCCC-------------cEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeC---CCcE
Q 018235 239 PITTGRLVTGDCNS-------------CIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV---DGHI 301 (359)
Q Consensus 239 p~~~~~l~sgs~dg-------------~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~---Dg~I 301 (359)
++. .|+.++.+. .|++|++.+...-...+..... |...+..+.|+|++..++++.+. ...|
T Consensus 184 -Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 184 -GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred -CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 998 666665553 3999998763221100112223 44557889999999966566553 3579
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+++|+.++......+..+....... |++++..+++..........|..++..++.
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 9999987633566666666655554 667777666554432334678888877654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.8e-06 Score=72.96 Aligned_cols=164 Identities=5% Similarity=-0.097 Sum_probs=107.0
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..+........|.|++..++++...++.|..|+... . ...+..+...+.++.|++++
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------------------~-~~~~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------------------T-VDVLLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------------------C-EEEEEESCSCEEEEEECTTS
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------------------C-EEEEeCCCCccceeeECCCC
Confidence 345566788999999966888888999999998743 1 23444455678899999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEE----EeC-------------CCcEEE
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFAS----CSV-------------DGHIAI 303 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las----~s~-------------Dg~I~i 303 (359)
. ++++...++.|.+|+.. ++.........+ ....++++.++|++. +++| |.. .+.|..
T Consensus 98 ~-l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 98 R-LVHCEHGRRAITRSDAD--GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp C-EEEEETTTTEEEEECTT--SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred C-EEEEECCCCEEEEECCC--CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEE
Confidence 7 66666666889999975 332210111111 124578899999998 7776 321 256777
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeec--ccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVM--MEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~--~~d~~i~iwd~~~ 355 (359)
||..++ .. ..+. .....+.++|+|++..|.+..... .....|.+|+...
T Consensus 174 ~d~~~g-~~-~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 174 LPPDGS-PL-QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp ECSSSC-CC-EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred EcCCCC-cE-EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 777655 22 2222 344578999999999776654310 0024677777543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-05 Score=69.22 Aligned_cols=157 Identities=5% Similarity=-0.046 Sum_probs=108.0
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.....+.++.+.+++ .++++...++.|.+|+..... . ...+..+...+.+|.+.+++.
T Consensus 17 ~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------------~-~~~~~~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 17 IPDSGPYGITSSEDG-KVWFTQHKANKISSLDQSGRI--------------------K-EFEVPTPDAKVMCLIVSSLGD 74 (300)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE--------------------E-EEECSSTTCCEEEEEECTTSC
T ss_pred CCCCCcceeeECCCC-CEEEEcCCCCeEEEECCCCce--------------------E-EEECCCCCCcceeEEECCCCC
Confidence 345688999999998 677777778999999876310 0 112223345788999999887
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-EEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-TSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~-~~~~~h~~ 321 (359)
++++...++.|..||.. +.... ..+......+.++++.+++. ++++...++.|..+|.. + ... ..+.....
T Consensus 75 -l~v~~~~~~~v~~~d~~--g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g-~~~~~~~~~~~~ 146 (300)
T 2qc5_A 75 -IWFTENGANKIGKLSKK--GGFTE--YPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-G-TIYEYDLPNKGS 146 (300)
T ss_dssp -EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-S-CEEEEECSSTTC
T ss_pred -EEEEecCCCeEEEECCC--CCeEE--ecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-C-CEEEccCCCCCC
Confidence 77777668899999976 33221 12222346789999999987 88887778899999987 4 322 22333456
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.++.+++.+++.+.+.... .+.|..++.
T Consensus 147 ~~~~i~~d~~g~l~v~~~~----~~~i~~~~~ 174 (300)
T 2qc5_A 147 YPAFITLGSDNALWFTENQ----NNSIGRITN 174 (300)
T ss_dssp CEEEEEECTTSSEEEEETT----TTEEEEECT
T ss_pred CceeEEECCCCCEEEEecC----CCeEEEECC
Confidence 7899999999986555432 345666665
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-06 Score=73.79 Aligned_cols=151 Identities=9% Similarity=0.104 Sum_probs=100.1
Q ss_pred CceeeEEEeCCCCcEEEE-EeC--------CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 166 GCVNRIRAMTQNPHICAS-WAD--------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat-~s~--------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
..++.+++.|++ .++++ ... .....||.+... .. +..+..+.....+++
T Consensus 98 ~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------g~-~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 98 NRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD--------------------HH-VKKYFDQVDISNGLD 155 (297)
T ss_dssp EEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------SC-EEEEEEEESBEEEEE
T ss_pred CCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC--------------------CC-EEEEeeccccccceE
Confidence 457899999999 45554 332 133455655431 11 122222333567999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecC-CCCccee--cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPA-SDATWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~-~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
|+|++..++++.+.++.|.+|++. ..+.... ....+..+......+++++++. ++++....+.|.+||..++ +.+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG-~~~ 233 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG-KRL 233 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC-CEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc-eEE
Confidence 999998455677778899999874 2233210 0112222345678899999997 8888888899999999876 667
Q ss_pred EEeecCCCCEEEEEEc-CCCCeEEEEee
Q 018235 314 TSFKAHNADVNVISWN-RCWLAVCWHLE 340 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s-~~~~~l~~~~~ 340 (359)
..+..+...+++++|. |++..|..+..
T Consensus 234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 7777676789999998 78776665544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-05 Score=70.29 Aligned_cols=157 Identities=7% Similarity=-0.050 Sum_probs=98.3
Q ss_pred ceeeEEEeCCCCcEEEEEe-CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 167 CVNRIRAMTQNPHICASWA-DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
....+.+ ..+ .++++.. .++.|.+||+.. .+.+..+... ....++.++|++. ++
T Consensus 132 ~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t---------------------~~~~~~i~~g-~~p~~i~~~~dG~-l~ 186 (328)
T 3dsm_A 132 STEQMVQ-YGK-YVYVNCWSYQNRILKIDTET---------------------DKVVDELTIG-IQPTSLVMDKYNK-MW 186 (328)
T ss_dssp BCCCEEE-ETT-EEEEEECTTCCEEEEEETTT---------------------TEEEEEEECS-SCBCCCEECTTSE-EE
T ss_pred CcceEEE-ECC-EEEEEcCCCCCEEEEEECCC---------------------CeEEEEEEcC-CCccceEEcCCCC-EE
Confidence 4556677 334 5666654 588999999986 2333333321 2345788899887 66
Q ss_pred EEEcCC----------CcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-
Q 018235 246 VTGDCN----------SCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL- 313 (359)
Q Consensus 246 ~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~- 313 (359)
+++..+ +.|.++|..+ ++.. ..+.. .......++|+|++. .+..+.. .|.+||+.++ +..
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~---~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t~-~~~~ 258 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAET-FTVE---KQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEAD-RVPV 258 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTT-TEEE---EEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTCS-SCCS
T ss_pred EEECCCccCCccccCCceEEEEECCC-CeEE---EEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCCC-ceee
Confidence 666554 7899999876 4432 22221 124688999999988 4544433 8999999876 322
Q ss_pred EE-eecCCCCEEEEEEcCCCCeEEEEe-eecccceEEEEEeCcCCc
Q 018235 314 TS-FKAHNADVNVISWNRCWLAVCWHL-EVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~-~~~h~~~V~~i~~s~~~~~l~~~~-~~~~~d~~i~iwd~~~g~ 357 (359)
.. +..+......|+++|++..+..+. .....++.|.+|+.. |+
T Consensus 259 ~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 259 RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11 222245689999999544444433 101126789999987 55
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-05 Score=68.09 Aligned_cols=156 Identities=7% Similarity=-0.096 Sum_probs=106.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+...+..+.+.+++ .++++...++.|..||.... .....+......+.++++.+++.
T Consensus 60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g~---------------------~~~~~~~~~~~~~~~i~~~~~g~- 116 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKKGG---------------------FTEYPLPQPDSGPYGITEGLNGD- 116 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSC---------------------EEEEECSSTTCCEEEEEECSTTC-
T ss_pred CCCcceeEEECCCC-CEEEEecCCCeEEEECCCCC---------------------eEEecCCCCCCCCccceECCCCC-
Confidence 34678899999988 67777677788999987631 11112222335688999999887
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE-EeecCCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~~ 322 (359)
++++...++.|..|+.. +.... ..+......+.++++.+++. ++++...++.|..+|. .+ .... .+..+...
T Consensus 117 l~v~~~~~~~i~~~~~~--g~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g-~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD--GTIYE--YDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TG-KLEEYPLPTNAAA 189 (300)
T ss_dssp EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TC-CEEEEECSSTTCC
T ss_pred EEEEccCCCeEEEECCC--CCEEE--ccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CC-cEEEeeCCCCCCC
Confidence 77777768899999985 33221 12233456789999999998 8888877889999998 43 2222 22334557
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+..|++.+++.+.+.... .+.|.+++.
T Consensus 190 ~~~i~~d~~g~l~v~~~~----~~~i~~~~~ 216 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIM----GNKIGRITT 216 (300)
T ss_dssp EEEEEECTTSSEEEEETT----TTEEEEECT
T ss_pred cceEEECCCCCEEEEccC----CCEEEEEcC
Confidence 899999999876665533 445777776
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.45 E-value=3.2e-05 Score=69.05 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=100.5
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+..--.+..|+|.+..++++....+.|+.||... .. ...+. ....+.++++++++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~---------------------~~-~~~~~-~~~~~~~i~~~~dG~- 66 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT---------------------KQ-VQRVT-MDAPVSSVALRQSGG- 66 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT---------------------CC-EEEEE-CSSCEEEEEEBTTSS-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCC---------------------Cc-EEEEe-CCCceEEEEECCCCC-
Confidence 3445668899997657888888899999999876 12 22232 345788999999987
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeC---------CCcEEEEECCCCCCce
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRVGKSAL 313 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~~~~~~ 313 (359)
++++. ++.|.+||..+ +..........+ ....++++.++|++. ++++... .....||.+... ..+
T Consensus 67 l~v~~--~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~ 141 (297)
T 3g4e_A 67 YVATI--GTKFCALNWKE-QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV 141 (297)
T ss_dssp EEEEE--TTEEEEEETTT-TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE
T ss_pred EEEEE--CCeEEEEECCC-CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE
Confidence 55543 56899999876 332210011111 124589999999998 6665432 133455555433 223
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
..+..+-...+.++|+|+++.+.+.... .+.|.+|+.
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~---~~~i~~~~~ 178 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSL---SYSVDAFDY 178 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGG---GTEEEEEEE
T ss_pred EEEeeccccccceEEcCCCCEEEEecCC---CCcEEEEec
Confidence 3333344457899999999977665432 556777764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00011 Score=68.17 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=99.5
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+...++ +.+.|.++..+++.+.||.+.+++. ..... ... ...+. +.+...-.....+.+++
T Consensus 164 i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~------------~~~~~--~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 164 LSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GAG------------LVGAM--LTAAQNLLTQPAQANKS 224 (373)
T ss_pred cCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE-EEE------------ecccc--ccCCcceeecceeEecC
Confidence 444444 4566777677788889999999999 51100 000 00011 11111111234556665
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccC----------CCCCeEEEEecCCCCCEEEEEe---------CCCcEE
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG----------HSASVEDLQWSPTEPDVFASCS---------VDGHIA 302 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~----------h~~~V~~v~~sp~~~~~las~s---------~Dg~I~ 302 (359)
..+++. +..+.+.+.|+........ ..+.- .......+.++|++..++++.. ..+.|.
T Consensus 225 ~~~~~~-~~~~~v~vid~~~~~~~v~--~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 225 GRIVWP-VYSGKILQADISAAGATNK--APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred CEEEEE-cCCceEEEEeccCCcceEe--eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 533444 3678899988865221111 11110 1233445788999885666543 235799
Q ss_pred EEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 303 IWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++|+.+. +.+.++. .....+++.|+|+|+.+++... ..++.|.++|..++++
T Consensus 302 VID~~t~-~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~--~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 302 SVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALS--AGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEECCCC-EEEEEEE-CCCCcCeEEECCCCCeEEEEEc--CCCCeEEEEECCCCCE
Confidence 9999987 6666774 3335889999999994444432 1267899999998875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=71.44 Aligned_cols=152 Identities=11% Similarity=-0.017 Sum_probs=97.8
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
-....+|+|++..++++...++.|..||... .. ...+. ....+.++.|++++. +++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~---------------------~~-~~~~~-~~~~v~~i~~~~dg~-l~v 105 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLAS---------------------GR-KTVHA-LPFMGSALAKISDSK-QLI 105 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTT---------------------TE-EEEEE-CSSCEEEEEEEETTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCC---------------------Cc-EEEEE-CCCcceEEEEeCCCe-EEE
Confidence 3467889998657888888889999999876 11 12222 234788999999986 555
Q ss_pred EEcCCCcEEEEecCCCCcceecCcccc-C-CCCCeEEEEecCCCCCEEEEEeC------CCcEEEEECCCCCCceEEeec
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFI-G-HSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+. .+ .|.+||..+ +.... ..... + ....++++.++|++. ++++... .+.|..++ .+ .+..+..
T Consensus 106 ~~-~~-gl~~~d~~~-g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g--~~~~~~~ 176 (326)
T 2ghs_A 106 AS-DD-GLFLRDTAT-GVLTL-HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG--KVTKLFA 176 (326)
T ss_dssp EE-TT-EEEEEETTT-CCEEE-EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT--EEEEEEE
T ss_pred EE-CC-CEEEEECCC-CcEEE-EeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CC--cEEEeeC
Confidence 54 34 499999866 33221 01111 1 124689999999998 6665442 24555555 33 3333333
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+....+.++|+|+++.+.+.... .+.|.+|+..
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~---~~~I~~~d~~ 209 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLD 209 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETT---TCEEEEEEBC
T ss_pred CCcccCCeEEcCCCCEEEEEECC---CCEEEEEEcc
Confidence 34457899999999877665432 5678888864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00021 Score=64.63 Aligned_cols=147 Identities=8% Similarity=-0.002 Sum_probs=94.3
Q ss_pred CceeeEEEeCCCCcEEEEEeC------CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 166 GCVNRIRAMTQNPHICASWAD------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..++.+++.|++ .++++... .+.|..++ .. .. ..+..+.....+++|+|
T Consensus 134 ~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~-~g----------------------~~-~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 134 NRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA-KG----------------------KV-TKLFADISIPNSICFSP 188 (326)
T ss_dssp EEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE-TT----------------------EE-EEEEEEESSEEEEEECT
T ss_pred CCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe-CC----------------------cE-EEeeCCCcccCCeEEcC
Confidence 368899999999 45554332 24555555 22 11 11112223467899999
Q ss_pred CCCCeEEEEcCCCcEEEEecC-CCC-ccee--cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 240 ITTGRLVTGDCNSCIYLWEPA-SDA-TWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~-~~~-~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
++..++++.+.++.|.+|++. ..+ .... ....+......+..+++++++. ++++...++.|.+||.. + ..+..
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~-g-~~~~~ 265 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-G-NHIAR 265 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-C-CEEEE
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCC-C-CEEEE
Confidence 997344566667899999986 123 2110 0011222345678899999997 88877777899999984 4 55666
Q ss_pred eecCCCCEEEEEEc-CCCCeEEEEee
Q 018235 316 FKAHNADVNVISWN-RCWLAVCWHLE 340 (359)
Q Consensus 316 ~~~h~~~V~~i~~s-~~~~~l~~~~~ 340 (359)
+..+...+.+++|. +++..|.....
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EECCCCCcEEEEEecCCCCEEEEEec
Confidence 66666679999998 88776655543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-07 Score=86.60 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC---CCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP---ITT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---~~~ 242 (359)
+.+.+..+..++ .++++++.+|.|+.||... ++.+..+..+..... ..+| .+
T Consensus 38 ~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~t---------------------G~~~w~~~~~~~~~~--~~sp~~~~~- 92 (369)
T 2hz6_A 38 DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKN---------------------NEGLTKLPFTIPELV--QASPCRSSD- 92 (369)
T ss_dssp CCSCCCC------CCEEECTTTCCEEEC--------------------------CCSEECSCCHHHHH--TTCSCC----
T ss_pred CCceecceEcCC-CEEEEeCCCCEEEEEECCC---------------------CceeeeeeccCcccc--ccCceEecC-
Confidence 455555555555 5777778999999999876 333333333211000 0011 22
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
+.|++|+.++.|+.||..+ ++.. ..+..+. .+.++|.+. .+++++.|+.|+.||.+++ +.+..+..+.
T Consensus 93 ~~v~~g~~dg~v~a~D~~t-G~~~---w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~-- 160 (369)
T 2hz6_A 93 GILYMGKKQDIWYVIDLLT-GEKQ---QTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTR-ELRWNATYFD-- 160 (369)
T ss_dssp --CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSS-SCCCEEEEEE--
T ss_pred CEEEEEeCCCEEEEEECCC-CcEE---EEecCCC----cccccccCC-EEEEEecCCEEEEEECCCC-CEEEeEeccc--
Confidence 3677888899999999987 4432 2233332 245667666 7888899999999999988 5554443211
Q ss_pred EEEEEEcCCC---CeEEEEeeecccceEEEEEeCcCCcc
Q 018235 323 VNVISWNRCW---LAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 323 V~~i~~s~~~---~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.....+..+. ..++.+.. ++.+..||..+|++
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~----dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNG----DGLVVTVDSESGDV 195 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEET----SCEEEEECTTTCCE
T ss_pred ccCccccCCccccceEEEECC----CCEEEEEECCCCcE
Confidence 1122233321 33344433 67788888877764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-05 Score=68.75 Aligned_cols=158 Identities=9% Similarity=-0.007 Sum_probs=99.2
Q ss_pred cCCCceeeEEEeCCCCcEEEE-------EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-----CCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICAS-------WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-----GHKD 230 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat-------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~ 230 (359)
..-....+++|.+++ .++++ ...++.|.+||... .+. ..+. ++..
T Consensus 15 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~---------------------g~~-~~~~~~~~~~~~~ 71 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKT---------------------GKK-TVICKPEVNGYGG 71 (314)
T ss_dssp CCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTT---------------------CCE-EEEECCEETTEEC
T ss_pred ccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCC---------------------CcE-EEEEecccCCCCC
Confidence 344567889999888 67776 56678999999765 121 1121 2445
Q ss_pred ceEEEEeCCC-CCCeEEEEcCCCcEEEEecCCCCcceec-CccccC-CCCCeEEEEecCCCCCEEEEEeCC---------
Q 018235 231 EGYAIDWNPI-TTGRLVTGDCNSCIYLWEPASDATWNVD-PNPFIG-HSASVEDLQWSPTEPDVFASCSVD--------- 298 (359)
Q Consensus 231 ~v~~l~~sp~-~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~~-h~~~V~~v~~sp~~~~~las~s~D--------- 298 (359)
.+.++.++++ +. ++++.. .+.|.+|+.. ++.... .....+ ....+.+++++|++. ++++...+
T Consensus 72 ~~~~i~~~~~~g~-l~v~~~-~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 72 IPAGCQCDRDANQ-LFVADM-RLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR 146 (314)
T ss_dssp CEEEEEECSSSSE-EEEEET-TTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred CCceEEEecCCCc-EEEEEC-CCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence 6889999998 64 455444 4578899986 332211 011111 224588999999997 77776655
Q ss_pred ------CcEEEEECCCCCCceEEeecCCCCEEEEEEc----CCCCeEEEEeeecccceEEEEEeCc
Q 018235 299 ------GHIAIWDTRVGKSALTSFKAHNADVNVISWN----RCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 299 ------g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s----~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+.|..||.. + .. ..+..+....+.++|+ +++..+.+.... .+.|.+|+..
T Consensus 147 ~~~~~~~~l~~~~~~-g-~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~---~~~i~~~~~~ 206 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-G-QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP---TKKLWSYDIK 206 (314)
T ss_dssp TTSSSCEEEEEECTT-S-CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETT---TTEEEEEEEE
T ss_pred cccCCCCeEEEECCC-C-CE-EEeccCCCCcceEEEecccCCCCCEEEEEECC---CCeEEEEECC
Confidence 567777765 3 32 3333344457899999 998765554321 4567777754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-05 Score=72.42 Aligned_cols=157 Identities=10% Similarity=0.018 Sum_probs=99.2
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+++ .++++...++.|++||... .. +..+........ ++|++++. .|
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~---------------------g~-~~~~~~~~~~~~-ia~~~~g~-~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDD---------------------NK-VTTVHPGFKGGK-PAVTKDKQ-RV 185 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTT---------------------TE-EEEEEETCCBCB-CEECTTSS-EE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCC---------------------CE-EEEeeccCCCCc-eeEecCCC-cE
Confidence 356789999988 6888888889999999875 12 222222233344 99999998 78
Q ss_pred EEEcCCC--cEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-----e
Q 018235 246 VTGDCNS--CIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-----K 317 (359)
Q Consensus 246 ~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-----~ 317 (359)
++++.++ .|.+|+......... ...+.. ....+.+++++|.+..+++ +..++.|+.||..++ . ...+ .
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~-~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~-~-~~~~~~~~~~ 261 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTR-IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQ-E-VTLIKQLELS 261 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEE-EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTC-C-EEEEEECCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEE-eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCC-C-EEEEeccccc
Confidence 8887766 788888765322110 001112 4456788999995442555 677889999999876 2 2222 1
Q ss_pred cCCCCE--EEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 AHNADV--NVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~h~~~V--~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+...- +.|+|+|++..|.+.... .+.|..|+..
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~---~~~I~~~~~~ 297 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQN---LSSVYKITPD 297 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETT---TTEEEEECTT
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCC---CCEEEEEecC
Confidence 122212 389999965444444321 5677777754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-07 Score=84.99 Aligned_cols=142 Identities=9% Similarity=0.035 Sum_probs=71.8
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..+++++.+|.|+.||..+ ++.+..+.. ..+.+..+...+. .+++++.||.|+.||
T Consensus 10 ~~v~~gs~dg~v~a~d~~t---------------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRT---------------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLG 65 (369)
T ss_dssp TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-
T ss_pred CEEEEEcCCCEEEEEECCC---------------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEE
Confidence 5788889999999999887 566666654 3444444455565 788888999999999
Q ss_pred cCCCCc-ceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEE
Q 018235 259 PASDAT-WNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 259 ~~~~~~-~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~ 336 (359)
..++.. |......- .....++ .. .+. .+++++.++.|+.||.+++ +.+..+..+.. +.++|.+..++
T Consensus 66 ~~tG~~~w~~~~~~~~~~~~sp~----~~-~~~-~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~~----~~~~p~~~~v~ 134 (369)
T 2hz6_A 66 SKNNEGLTKLPFTIPELVQASPC----RS-SDG-ILYMGKKQDIWYVIDLLTG-EKQQTLSSAFA----DSLSPSTSLLY 134 (369)
T ss_dssp ----CCSEECSCCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC---------------------------EE
T ss_pred CCCCceeeeeeccCccccccCce----Ee-cCC-EEEEEeCCCEEEEEECCCC-cEEEEecCCCc----ccccccCCEEE
Confidence 976432 22100000 0011111 11 233 6777888999999999998 66666654432 34566777777
Q ss_pred EEeeecccceEEEEEeCcCCccC
Q 018235 337 WHLEVMMEHFLFMILDCSRGEIR 359 (359)
Q Consensus 337 ~~~~~~~~d~~i~iwd~~~g~v~ 359 (359)
.+.. ++.|..||..+|+++
T Consensus 135 ~~~~----dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 135 LGRT----EYTITMYDTKTRELR 153 (369)
T ss_dssp EEEE----EEEEECCCSSSSSCC
T ss_pred EEec----CCEEEEEECCCCCEE
Confidence 6654 778999999988753
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00076 Score=58.81 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=103.3
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..+..+.+.+.+..++++-...+.|..+++.. ......+........+|++++.+..++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------~~~~~~~~~~~~~p~~ia~d~~~~~ly 94 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGRTIF 94 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC---------------------CCcEEEEECCCCCccEEEEEecCCeEE
Confidence 35778999997657888877889999999875 122222222224567899998765355
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECCCCCCceEEe-ecCCCC
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSALTSF-KAHNAD 322 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~~~~~-~~h~~~ 322 (359)
++-...+.|.++++.. .... ............++++|.+..++++... .+.|..+++... ....+ ...-..
T Consensus 95 v~d~~~~~I~~~~~~g-~~~~---~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~--~~~~~~~~~~~~ 168 (267)
T 1npe_A 95 WTDSQLDRIEVAKMDG-TQRR---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGL 168 (267)
T ss_dssp EEETTTTEEEEEETTS-CSCE---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--CCEEEECTTCSC
T ss_pred EEECCCCEEEEEEcCC-CCEE---EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--CcEEEEECCCCC
Confidence 6666678999999864 2211 1111122467899999976646666554 478888887653 22222 222345
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|++++++..|.+.... .+.|..++...
T Consensus 169 P~gia~d~~~~~lyv~d~~---~~~I~~~~~~g 198 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAG---THRAECLNPAQ 198 (267)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEETTE
T ss_pred CcEEEEcCCCCEEEEEECC---CCEEEEEecCC
Confidence 7899999988877776542 45677777643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.3e-05 Score=68.20 Aligned_cols=164 Identities=7% Similarity=-0.055 Sum_probs=99.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeC-----CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec------CCCCc
Q 018235 163 AHQGCVNRIRAMTQNPHICASWAD-----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDE 231 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~-----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~ 231 (359)
.|-..+.++++.+++ .++++-.. .+.|.+||+... +.+..+. .+...
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg---------------------~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNN---------------------QLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTT---------------------EEEEEEECCTTTSCTTCC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCC---------------------eEEEEEECChhhcccccc
Confidence 456789999999998 66665433 578999998751 2222221 12234
Q ss_pred eEEEEeCCCCCCeEEEEc---CCCcEEEEecCCCCcceecCccccCC-----------------------------CCCe
Q 018235 232 GYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGH-----------------------------SASV 279 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h-----------------------------~~~V 279 (359)
...+++++.+...+++.. .++.|.+||+.++..+. .+.+| ...+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r----~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 197 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR----VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGV 197 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE----ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE----EecCCCcccccccceeECCEEEEeccCCCceeceeccc
Confidence 578999876542456555 57899999987632221 11111 1246
Q ss_pred EEEEecCCCCCEEEEEeCCC-cEEEEECC---CCC----Cce--EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 280 EDLQWSPTEPDVFASCSVDG-HIAIWDTR---VGK----SAL--TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg-~I~iwD~r---~~~----~~~--~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
+.|+|+|++. .|..+...+ .|..++.. .+. ... ....++......++++++|.+++.... .+.|.
T Consensus 198 ~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~----~~~V~ 272 (343)
T 2qe8_A 198 NGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA----HSAIG 272 (343)
T ss_dssp EEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG----GTEEE
T ss_pred ceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC----CCeEE
Confidence 8899999998 555555444 55555532 110 000 112233445667899999987776654 67799
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
+|+...|+
T Consensus 273 ~~d~~~G~ 280 (343)
T 2qe8_A 273 VITSADRA 280 (343)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99884443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00023 Score=66.79 Aligned_cols=156 Identities=19% Similarity=0.127 Sum_probs=101.4
Q ss_pred eeeEEEeCCCCcEEEEEeCC------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC---CCceEEEEeC
Q 018235 168 VNRIRAMTQNPHICASWADT------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH---KDEGYAIDWN 238 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s 238 (359)
-..+.+.|++ +++++..+ |.|.++|..+ .+.+..+..- ..-.|.+.|+
T Consensus 140 Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T---------------------~~v~~~~~~~~~~~~~~Yd~~~~ 196 (462)
T 2ece_A 140 LHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS---------------------FEPLGKWEIDRGDQYLAYDFWWN 196 (462)
T ss_dssp EEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT---------------------CCEEEECCSBCTTCCCCCCEEEE
T ss_pred ccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC---------------------CeEEEEEccCCCCccccceEEEC
Confidence 3456788988 55565554 7899999886 3444444311 1235678899
Q ss_pred CCCCCeEEEEc-------------------CCCcEEEEecCCCCcceecCccccC--CCCCeEEEEe--cCCCCCEEEEE
Q 018235 239 PITTGRLVTGD-------------------CNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQW--SPTEPDVFASC 295 (359)
Q Consensus 239 p~~~~~l~sgs-------------------~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~--sp~~~~~las~ 295 (359)
|++. .+++.. ...+|.+||+.+ ++.. ..+.- .......|.| +|+++..++++
T Consensus 197 p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~---~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 197 LPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRI---HSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp TTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEE---EEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred CCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEe---eEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 9998 777774 468999999986 4433 23322 1123445555 99999777777
Q ss_pred e-----CCCcEEEEECCCCCC-ceEE--eecC----------------CCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 296 S-----VDGHIAIWDTRVGKS-ALTS--FKAH----------------NADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 296 s-----~Dg~I~iwD~r~~~~-~~~~--~~~h----------------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
- .+++|.+|....+.- .... +... ......|.+++++++|..+.+. .+.|.++
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---~d~Vavf 348 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---IGEVRQY 348 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT---TTEEEEE
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC---CCEEEEE
Confidence 7 788888776544310 1111 1110 2346788999999999888663 6789999
Q ss_pred eCc
Q 018235 352 DCS 354 (359)
Q Consensus 352 d~~ 354 (359)
++.
T Consensus 349 dV~ 351 (462)
T 2ece_A 349 DIS 351 (462)
T ss_dssp ECS
T ss_pred Eec
Confidence 875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00095 Score=62.69 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=90.4
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec------C-CCCceEEEEeCCCCCCeEEE
Q 018235 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------G-HKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~sp~~~~~l~s 247 (359)
+++..+++++..+++|+|+|+....... +.+.++. . -...-+.+..+|++ ++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p-----------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs 153 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP-----------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYIS 153 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC-----------------EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc-----------------eeeeeechhhcccccCCCcccceeECCCe--EEEE
Confidence 6677888999999999999997632211 1222231 0 01134567778887 6666
Q ss_pred EcCC------CcEEEEecCCCCcceecCcccc--CCC-CCeEEEEecCCCCCEEEEEe-------------------CCC
Q 018235 248 GDCN------SCIYLWEPASDATWNVDPNPFI--GHS-ASVEDLQWSPTEPDVFASCS-------------------VDG 299 (359)
Q Consensus 248 gs~d------g~I~lwd~~~~~~~~~~~~~~~--~h~-~~V~~v~~sp~~~~~las~s-------------------~Dg 299 (359)
+..+ |.|.+.|..+ .+.+ ..+. ... .--+++.|+|.+. ++++.. ...
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T-~~v~---~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d 228 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYS-FEPL---GKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGN 228 (462)
T ss_dssp EEEETTSCSCCEEEEECTTT-CCEE---EECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred cCCCcCCCCCCeEEEEECCC-CeEE---EEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCC
Confidence 5555 7899999887 3333 2221 122 2345789999999 766663 478
Q ss_pred cEEEEECCCCCCceEEeecC--CCCEEEEEE--cCCCCeEEEEee
Q 018235 300 HIAIWDTRVGKSALTSFKAH--NADVNVISW--NRCWLAVCWHLE 340 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h--~~~V~~i~~--s~~~~~l~~~~~ 340 (359)
+|.+||+.++ +.+.++..- ......|.| +|+++++...+.
T Consensus 229 ~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 229 RIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp EEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred EEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 9999999986 666666432 123445555 999987776654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=67.07 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=96.4
Q ss_pred CCceeeEEEeCCCCcEEEEEe---CCCcEEEEECCCCcc-c-cccccccccCCCCCCCCCCCcEEecC------CCCceE
Q 018235 165 QGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLN-A-LAESETIVGQGAPQVSNQSPLVKFGG------HKDEGY 233 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~ 233 (359)
...++.+++.+.+..++++-. .++.|.+||+..... . +...................+..... ......
T Consensus 119 ~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 198 (343)
T 2qe8_A 119 NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN 198 (343)
T ss_dssp TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE
T ss_pred ccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc
Confidence 346799999986546777766 678999999875211 1 00000000000000000000000000 112468
Q ss_pred EEEeCCCCCCeEEEEcCCC-cEEEEecCC--CCcc----eecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 234 AIDWNPITTGRLVTGDCNS-CIYLWEPAS--DATW----NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg-~I~lwd~~~--~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|+|+|++. .|+.++..+ .|..++... .... ........++......+++++++. ++++...++.|.+||.
T Consensus 199 gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 199 GIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEET
T ss_pred eeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEEC
Confidence 899999997 777776665 454444321 0100 000001223444566789999987 9999999999999998
Q ss_pred CCCCCceEEee--cCCCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKSALTSFK--AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+ . +..+. .+...+..++|.+++.+++.+..
T Consensus 277 ~~G-~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 277 ADR-A-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp TTT-E-EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CCC-C-EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 444 3 23332 23456899999999887777653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0026 Score=54.74 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=93.7
Q ss_pred CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEE
Q 018235 177 NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYL 256 (359)
Q Consensus 177 ~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~l 256 (359)
+..+.+..-.++.+.+||..+ .+.+.++.. ..++++|++ ++. .|+.+..++.|.+
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~t---------------------l~~~~ti~~-~~~Gwglt~--dg~-~L~vSdgs~~l~~ 128 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLAT---------------------LTPRARFRY-PGEGWALTS--DDS-HLYMSDGTAVIRK 128 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTT---------------------TEEEEEEEC-SSCCCEEEE--CSS-CEEEECSSSEEEE
T ss_pred CCEEEEEEeeCCEEEEEECCc---------------------CcEEEEEeC-CCCceEEee--CCC-EEEEECCCCeEEE
Confidence 445666666789999999987 455666654 346678876 454 5666667889999
Q ss_pred EecCCCCcceecCccccCCC---CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-------------C
Q 018235 257 WEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-------------N 320 (359)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-------------~ 320 (359)
+|+.+. +.... .....+. ..++.+.|. ++. ++|....+..|.+.|.+++ +.+..+... .
T Consensus 129 iDp~t~-~~~~~-I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 129 LDPDTL-QQVGS-IKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp ECTTTC-CEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTS
T ss_pred EeCCCC-eEEEE-EEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcC
Confidence 999873 32210 1111121 345677776 566 8888878889999999998 666555311 1
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEE
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMI 350 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~i 350 (359)
.-.|.|+|+|.+..|.........-..|++
T Consensus 204 ~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp SCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 356999999988777666543333333444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00013 Score=65.29 Aligned_cols=141 Identities=9% Similarity=0.038 Sum_probs=87.7
Q ss_pred ceeeEEEeCCCCcEEEE----EeC-------------CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC
Q 018235 167 CVNRIRAMTQNPHICAS----WAD-------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat----~s~-------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 229 (359)
.++.+.+.|++ .+++| |.. .+.|+.||... .... .+. ..
T Consensus 132 ~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---------------------g~~~-~~~-~~ 187 (305)
T 3dr2_A 132 SPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG---------------------SPLQ-RMA-DL 187 (305)
T ss_dssp CCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---------------------CCCE-EEE-EE
T ss_pred CCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCC---------------------CcEE-EEe-cC
Confidence 46789999988 67775 321 24556665533 2222 222 33
Q ss_pred CceEEEEeCCCCCCeEEEEcCC------CcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 230 DEGYAIDWNPITTGRLVTGDCN------SCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
....+++|+|++. .|+.++.. +.|.+|++...+ .. ....+ .........+++++++. ++++. .+ .|.
T Consensus 188 ~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~~-gv~ 261 (305)
T 3dr2_A 188 DHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFASVPDGLPDGFCVDRGGW-LWSSS-GT-GVC 261 (305)
T ss_dssp SSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEECCSSSCCCSEEECTTSC-EEECC-SS-EEE
T ss_pred CCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEECCCCCCCeEEECCCCC-EEEec-CC-cEE
Confidence 4567899999998 66666554 689999986532 11 01111 11233456789999998 66554 44 499
Q ss_pred EEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 303 IWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
+|+... +.+..+..+. .+.+++|.+++..|..+..
T Consensus 262 ~~~~~g--~~~~~~~~~~-~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 262 VFDSDG--QLLGHIPTPG-TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECTTS--CEEEEEECSS-CCCEEEECTTSCEEEEEET
T ss_pred EECCCC--CEEEEEECCC-ceeEEEEeCCCCEEEEEcC
Confidence 999853 5555665444 5888999998887766654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0018 Score=56.28 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=99.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.........+.+..+.+..-.++.+.+||..+ .+.+.++.. ..++++|++ ++. .|
T Consensus 85 ~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---------------------~~~~~ti~~-~~eG~glt~--dg~-~L 139 (262)
T 3nol_A 85 KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---------------------LRQVRSFNY-DGEGWGLTH--NDQ-YL 139 (262)
T ss_dssp TTCCEEEEEEETTEEEEEESSSSEEEEEETTT---------------------CCEEEEEEC-SSCCCCEEE--CSS-CE
T ss_pred CccceeEEEEeCCEEEEEEeeCCEEEEEECcc---------------------CcEEEEEEC-CCCceEEec--CCC-EE
Confidence 34433333333435655555789999999987 466666654 336667775 455 66
Q ss_pred EEEcCCCcEEEEecCCCCcceecCcc-ccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC----
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNP-FIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH---- 319 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~-~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h---- 319 (359)
+.++.++.|+++|+.+. +....+.. ..+.. ..++.+.|. ++. +++....+..|.+.|.+++ +.+..+...
T Consensus 140 ~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~ 215 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETG-KVTGIIDLNGILA 215 (262)
T ss_dssp EECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTC-BEEEEEECTTGGG
T ss_pred EEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCC-cEEEEEECCcCcc
Confidence 66666788999999873 32211011 11112 445678886 666 8888888899999999998 666555321
Q ss_pred --------CCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 320 --------NADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 320 --------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
..-.|.|+|+|++..|.........-..|++-
T Consensus 216 ~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 216 EAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp GSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred ccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 23569999999988777766544333445543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.001 Score=58.34 Aligned_cols=164 Identities=7% Similarity=-0.020 Sum_probs=103.5
Q ss_pred EEEEecCCCc--eeeEEEeCCCCcEEEEEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCce
Q 018235 158 QLRKVAHQGC--VNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEG 232 (359)
Q Consensus 158 ~~~~~~H~~~--V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 232 (359)
....++|... ...+.|++++ .++++.+. ++.|+++|+.+ .+.+..+. +....+
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---------------------g~v~~~i~l~~~~fg 68 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---------------------GKVENIHKMDDSYFG 68 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---------------------CCEEEEEECCTTCCE
T ss_pred EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---------------------CCEEEEEecCCCcce
Confidence 3566688864 5799999987 66666543 68999999987 44444432 222233
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
.++++. +..++++.-.++.+.++|..+ .+.+ ..+..... ....+++++..++++- .++.|.++|..+. +.
T Consensus 69 eGi~~~--g~~lyv~t~~~~~v~viD~~t-~~v~---~~i~~g~~--~g~glt~Dg~~l~vs~-gs~~l~viD~~t~-~v 138 (266)
T 2iwa_A 69 EGLTLL--NEKLYQVVWLKNIGFIYDRRT-LSNI---KNFTHQMK--DGWGLATDGKILYGSD-GTSILYEIDPHTF-KL 138 (266)
T ss_dssp EEEEEE--TTEEEEEETTCSEEEEEETTT-TEEE---EEEECCSS--SCCEEEECSSSEEEEC-SSSEEEEECTTTC-CE
T ss_pred EEEEEe--CCEEEEEEecCCEEEEEECCC-CcEE---EEEECCCC--CeEEEEECCCEEEEEC-CCCeEEEEECCCC-cE
Confidence 455655 332556666788999999976 4433 22321111 1233556777677665 6789999999987 55
Q ss_pred eEEeec--C---CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 LTSFKA--H---NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 ~~~~~~--h---~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+.. + -..++.+.|. ++.+. .... ..+.|.+.|+.+++|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~-dg~ly-vn~~---~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI-NGEVW-ANIW---QTDCIARISAKDGTL 184 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEE-EEET---TSSEEEEEETTTCCE
T ss_pred EEEEEECCCCcccccceeEEEE-CCEEE-EecC---CCCeEEEEECCCCcE
Confidence 555532 1 1247888988 66433 2221 256799999998875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00028 Score=65.16 Aligned_cols=73 Identities=8% Similarity=-0.015 Sum_probs=52.3
Q ss_pred EEecCCCCCEEEEEe---C-----CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 282 LQWSPTEPDVFASCS---V-----DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 282 v~~sp~~~~~las~s---~-----Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.++|++..++++.. . ++.+.++|+.+. +.+..+.... ..+.|.|+|+++.+++... ..++.|.++|.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~--~~~~~VsVID~ 344 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-DSDAIIAAQDGASDNYANS--AGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-EECEEEECCSSSCEEEEEE--TTTTEEEEEES
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC-CcceEEECCCCCEEEEEcc--CCCCeEEEEEC
Confidence 678999885666544 2 235669999997 6666664333 5889999999986666544 11688999999
Q ss_pred cCCcc
Q 018235 354 SRGEI 358 (359)
Q Consensus 354 ~~g~v 358 (359)
.++++
T Consensus 345 ~t~kv 349 (368)
T 1mda_H 345 ASDQD 349 (368)
T ss_dssp SSCEE
T ss_pred CCCcE
Confidence 98875
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0095 Score=53.45 Aligned_cols=166 Identities=9% Similarity=-0.058 Sum_probs=101.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
........+.|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.+.
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----------------CcccEEEEeCCCCCcCEEEEeecCC
Confidence 44566788999987657888877889999998865100 0011112222222335666665554
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEe-ecCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSF-KAHN 320 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~-~~h~ 320 (359)
.++++-...+.|.+.++.. .... ..+...-....+++++|.+..++.+.... +.|...++... ....+ ...-
T Consensus 90 ~ly~~d~~~~~I~~~~~~g-~~~~---~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~ 163 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKG-VKRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENI 163 (316)
T ss_dssp EEEEEETTTTEEEEEETTS-SSEE---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSC
T ss_pred eEEEEECCCCEEEEEeCCC-CceE---EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCC
Confidence 3556666788999999854 2211 11222335678999999776577776554 78888887653 22222 2233
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+.|+|++++..|.|.... .+.|..++..
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~---~~~I~~~d~d 194 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSK---LHSISSIDVN 194 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred CCceEEEEeccCCEEEEEECC---CCeEEEEecC
Confidence 467899999988888777542 4567777664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0044 Score=54.25 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=93.0
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
.+.+. +..+.++.-.++.|.++|..+ .+.+.++..-..++++|++ ++. .|+.+.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t---------------------~~v~~~i~~g~~~g~glt~--Dg~-~l~vs~ 123 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRT---------------------LSNIKNFTHQMKDGWGLAT--DGK-ILYGSD 123 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTT---------------------TEEEEEEECCSSSCCEEEE--CSS-SEEEEC
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCC---------------------CcEEEEEECCCCCeEEEEE--CCC-EEEEEC
Confidence 34444 435666666889999999987 3445555322245566665 565 555566
Q ss_pred CCCcEEEEecCCCCcceecCccccCC---CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-------
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------- 319 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------- 319 (359)
.++.|.++|+.+. +.... .....+ -..++.+.|. ++. ++++...++.|.+.|..++ +.+..+...
T Consensus 124 gs~~l~viD~~t~-~v~~~-I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 124 GTSILYEIDPHTF-KLIKK-HNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLI 198 (266)
T ss_dssp SSSEEEEECTTTC-CEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHH
T ss_pred CCCeEEEEECCCC-cEEEE-EEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCC-cEEEEEECCCcccccc
Confidence 7889999999773 32210 111111 1246788888 665 8888878899999999998 666666421
Q ss_pred ------CCCEEEEEEcCCCCeEEEEeee
Q 018235 320 ------NADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 320 ------~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
....+.|+|+|++..+..+...
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred cccccccCceEEEEEcCCCCEEEEECCC
Confidence 1356999999999877766553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0088 Score=54.55 Aligned_cols=161 Identities=8% Similarity=-0.063 Sum_probs=102.6
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
.......+.|.+.+..++.+-...+.|+.+++.. ......+........+|++.+.+..
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g---------------------~~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG---------------------SNVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------------------CSCEEEECSSCSCCCEEEEETTTTE
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCC---------------------CCceEEEeCCCCCccEEEEecCCCe
Confidence 3445788999987657777777788999998876 1222222221223346666655543
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEe-ecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSF-KAHNA 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~-~~h~~ 321 (359)
++++-...+.|.+.++.. .... ..+...-....+|+++|.+..++.+-... +.|..+++... ....+ ...-.
T Consensus 130 ly~~d~~~~~I~~~~~dG-~~~~---~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~~~~~~ 203 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDG-AHRK---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLF 203 (349)
T ss_dssp EEEEETTTTEEEEEETTS-CSCE---EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEESCCSSCS
T ss_pred EEEEcCCCCeEEEEcCCC-CceE---EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC--CcEEEEECCCC
Confidence 556666678899998864 2211 11222335678999999776577777766 88999988754 22222 22334
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+.|+|+|.+..|.|.... .+.|..++..
T Consensus 204 ~PnGla~d~~~~~lY~aD~~---~~~I~~~~~d 233 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAK---HHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred CcceEEEeCCCCEEEEEECC---CCEEEEEeCC
Confidence 57899999988877777542 4567777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00072 Score=62.50 Aligned_cols=99 Identities=12% Similarity=-0.032 Sum_probs=63.1
Q ss_pred cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc----------CCCcEEEEe
Q 018235 189 HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD----------CNSCIYLWE 258 (359)
Q Consensus 189 ~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs----------~dg~I~lwd 258 (359)
.|.+||... .+.+..+..-..+ .+.+||+++ +|+.+. .++.|.+||
T Consensus 48 ~v~v~D~~t---------------------~~~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 48 QQWVLDAGS---------------------GSILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred EEEEEECCC---------------------CeEEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEE
Confidence 889999876 3444444432333 899999998 666654 367899999
Q ss_pred cCCCCcceecCcccc--C---CCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEE
Q 018235 259 PASDATWNVDPNPFI--G---HSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~--~---h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~ 315 (359)
+.+ .+.... .... . +......+.|+|+++.++++... ++.|.++| .++ +.+..
T Consensus 104 ~~t-~~~~~~-i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~ 162 (373)
T 2mad_H 104 PVT-FLPIAD-IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQ 162 (373)
T ss_pred CCC-CcEEEE-EECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-CEEeE
Confidence 976 332210 0111 0 11234579999999944444433 58899999 876 55555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0011 Score=57.78 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEE
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~ 255 (359)
.+..+.+..-.++.+.+||..+ .+.+.++.. ..++++|++ ++. .|+.++.++.|+
T Consensus 104 ~g~~Ly~ltw~~~~v~V~D~~T---------------------l~~~~ti~~-~~eGwGLt~--Dg~-~L~vSdGs~~l~ 158 (268)
T 3nok_A 104 DGERLYQLTWTEGLLFTWSGMP---------------------PQRERTTRY-SGEGWGLCY--WNG-KLVRSDGGTMLT 158 (268)
T ss_dssp CSSCEEEEESSSCEEEEEETTT---------------------TEEEEEEEC-SSCCCCEEE--ETT-EEEEECSSSEEE
T ss_pred eCCEEEEEEccCCEEEEEECCc---------------------CcEEEEEeC-CCceeEEec--CCC-EEEEECCCCEEE
Confidence 3435665556789999999987 455666654 345677775 455 676667788999
Q ss_pred EEecCCCCcceecCccccCCC---CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-------------
Q 018235 256 LWEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------------- 319 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------------- 319 (359)
++|+.+. +.... .....+. ..++.+.|. ++. +++....+..|.+.|.+++ +.+..+...
T Consensus 159 ~iDp~T~-~v~~~-I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~ 233 (268)
T 3nok_A 159 FHEPDGF-ALVGA-VQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNP 233 (268)
T ss_dssp EECTTTC-CEEEE-EECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCT
T ss_pred EEcCCCC-eEEEE-EEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCc
Confidence 9999873 32211 1111122 345778887 666 8888888899999999998 665555321
Q ss_pred CCCEEEEEEcCCCCeEEEEee
Q 018235 320 NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..-.|.|+|+|.+..|..+..
T Consensus 234 ~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 234 EAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCCEEEEEECTTTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEeCC
Confidence 135799999998776665544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.012 Score=50.94 Aligned_cols=159 Identities=8% Similarity=-0.069 Sum_probs=98.9
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+.+..++++-...+.|.++++... ..............+++++|.+..++
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---------------------~~~~~~~~~~~~P~~i~vd~~~g~ly 137 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---------------------QRRVLFDTGLVNPRGIVTDPVRGNLY 137 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---------------------CEEEEEECCCCCccEEEEeeCCCEEE
Confidence 467899999976578888778889999998651 11111211123567899999665244
Q ss_pred EEEcC--CCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 246 VTGDC--NSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 246 ~sgs~--dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
++... .+.|..+++.. ... ..+ ...-.....++++|++..++++....+.|.++|+... .....+. ....
T Consensus 138 v~~~~~~~~~I~~~~~dg-~~~----~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~-~~~~ 210 (267)
T 1npe_A 138 WTDWNRDNPKIETSHMDG-TNR----RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE-GLQY 210 (267)
T ss_dssp EEECCSSSCEEEEEETTS-CCC----EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE-CCCS
T ss_pred EEECCCCCcEEEEEecCC-CCc----EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEec-CCCC
Confidence 44433 46888888753 221 111 1223467899999987757888888899999999764 2222222 2233
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...|+.. +..+.+.... .+.|..++..+|+
T Consensus 211 P~gi~~d--~~~lyva~~~---~~~v~~~d~~~g~ 240 (267)
T 1npe_A 211 PFAVTSY--GKNLYYTDWK---TNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEEE--TTEEEEEETT---TTEEEEEETTTTE
T ss_pred ceEEEEe--CCEEEEEECC---CCeEEEEeCCCCC
Confidence 4566654 4555555432 4667888877665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0049 Score=57.10 Aligned_cols=162 Identities=8% Similarity=-0.072 Sum_probs=102.0
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
.......+.|.+.+..++.+-...+.|+.+++.. ......+........+|++.+.+..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g---------------------~~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNG---------------------SNVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------------------CCEEEEECSSCSCCCCEEEETTTTE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC---------------------CCcEEEEeCCCCCccEEEEEeCCCe
Confidence 3455788999986657777777788999998876 1111122211223345666655543
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEeecCCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
++++-...+.|.+.++.. .... ..+...-....+|+++|.+..++.+-... +.|..+++... .....+...-..
T Consensus 173 lY~~d~~~~~I~~~~~dg-~~~~---~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDG-AHRK---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTS-CSCE---EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSC
T ss_pred EEEEcCCCCeEEEEeCCC-CceE---EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCC
Confidence 556666677888888754 2211 11222335678999999877577777666 88998888764 222222333445
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+.|+|+|.+..|.|.... .+.|..++..
T Consensus 248 PnGlavd~~~~~lY~aD~~---~~~I~~~d~d 276 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAK---HHVIERANLD 276 (386)
T ss_dssp EEEEEEEGGGTEEEEEETT---TTEEEEECTT
T ss_pred eeeEEEeCCCCEEEEEECC---CCEEEEEeCC
Confidence 7899999888877777542 4567777654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00028 Score=65.34 Aligned_cols=139 Identities=5% Similarity=-0.086 Sum_probs=88.4
Q ss_pred EeCCCCcEEEEEeC----CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 173 AMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 173 ~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..|++..++++-.. ++.|.+.|..+ .+.+..+..-..+ . +.++|+++ +|+.+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t---------------------~~v~~~I~vG~~P-~-va~spDG~-~lyVa 95 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA---------------------GRVIGMIDGGFLP-N-PVVADDGS-FIAHA 95 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT---------------------TEEEEEEEECSSC-E-EEECTTSS-CEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC---------------------CeEEEEEECCCCC-c-EEECCCCC-EEEEE
Confidence 35667455555433 68999999987 4555555443334 3 99999998 55554
Q ss_pred c----------CCCcEEEEecCCCCcceecCcccc-CC------CCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCC
Q 018235 249 D----------CNSCIYLWEPASDATWNVDPNPFI-GH------SASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGK 310 (359)
Q Consensus 249 s----------~dg~I~lwd~~~~~~~~~~~~~~~-~h------~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~ 310 (359)
+ .++.|.+||..+ .+.. ..+. +. ......+.|+|+++.++++... ++.|.++|+.+.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t-~~v~---~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~- 170 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVT-LLPT---ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK- 170 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTT-CCEE---EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-
T ss_pred cccccccccCCCCCEEEEEECCC-CeEE---EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-
Confidence 3 367899999987 4433 1121 11 1245568999999955555433 789999999997
Q ss_pred CceEEeecCCC-CE------EEEEEcCCCCeEEEEee
Q 018235 311 SALTSFKAHNA-DV------NVISWNRCWLAVCWHLE 340 (359)
Q Consensus 311 ~~~~~~~~h~~-~V------~~i~~s~~~~~l~~~~~ 340 (359)
+.+.++..-.. .+ .-++.+++|+++..+..
T Consensus 171 ~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 171 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cEEEEEECCCcceeecCCCceeEEECCCCCEEEEECC
Confidence 66666632111 00 11366788887777765
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00081 Score=58.56 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=98.6
Q ss_pred EEEecCCCce--eeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceE
Q 018235 159 LRKVAHQGCV--NRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGY 233 (359)
Q Consensus 159 ~~~~~H~~~V--~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~ 233 (359)
.+.++|...- ..+.|+ ++ .++.+.+.+| .|+++|+.+ ++.+..+..... .+.
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---------------------gkv~~~~~l~~~~Fge 90 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---------------------GKTLQQIELGKRYFGE 90 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC---------------------CcEEEEEecCCcccee
Confidence 4566887554 888898 55 6777777766 899999987 444444433221 223
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++.. .+..++++.-.++.+.+||..+ .+.+ ..+.... ....+++++..+++|-+ ++.|.++|..+. +.+
T Consensus 91 Git~--~g~~ly~ltw~~~~v~v~D~~t-~~~~---~ti~~~~---eG~glt~dg~~L~~SdG-s~~i~~iDp~T~-~v~ 159 (262)
T 3nol_A 91 GISD--WKDKIVGLTWKNGLGFVWNIRN-LRQV---RSFNYDG---EGWGLTHNDQYLIMSDG-TPVLRFLDPESL-TPV 159 (262)
T ss_dssp EEEE--ETTEEEEEESSSSEEEEEETTT-CCEE---EEEECSS---CCCCEEECSSCEEECCS-SSEEEEECTTTC-SEE
T ss_pred EEEE--eCCEEEEEEeeCCEEEEEECcc-CcEE---EEEECCC---CceEEecCCCEEEEECC-CCeEEEEcCCCC-eEE
Confidence 3444 3432445555688999999987 3333 2332211 22233456665666654 678999999987 566
Q ss_pred EEeecC--C---CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKAH--N---ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~h--~---~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.++... . ..+|.+.|. +|.+. ...- ..+.|.+.|+.+|+|
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G~ly-an~w---~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DGEIF-ANVW---QTNKIVRIDPETGKV 204 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TTEEE-EEET---TSSEEEEECTTTCBE
T ss_pred EEEEeccCCccccccceeEEE-CCEEE-EEEc---cCCeEEEEECCCCcE
Confidence 665321 1 346778887 56533 2221 256788899998876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00085 Score=63.08 Aligned_cols=161 Identities=10% Similarity=0.102 Sum_probs=97.1
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE----EecCCCCce-EEEEeCCCCCCeE
Q 018235 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV----KFGGHKDEG-YAIDWNPITTGRL 245 (359)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v-~~l~~sp~~~~~l 245 (359)
....|.+...+++.+.||.+.+.++.. .+... .+.....++ ..+.+.+++. .+
T Consensus 222 ~~~~p~g~~~~v~~~~dG~~~~V~~~~---------------------~~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~ 279 (426)
T 3c75_H 222 YHIFPASPTVFYMNCRDGSLARVDFAD---------------------GETKVTNTEVFHTEDELLINHPAFSLRSG-RL 279 (426)
T ss_dssp EEEEEEETTEEEEEETTSSEEEEECCT---------------------TCCEEEECCCCSCTTSCBCSCCEECTTTC-EE
T ss_pred eeeccCCCcEEEEEcCCCCEEEEECCC---------------------CcEEEEeeeeeccCCCceeeEeeecCCCC-EE
Confidence 344555556677778899998888833 11111 111111111 1356788887 55
Q ss_pred EEEcCCCcEEEEecCCCCcceecCcccc--------CCCCCeEEEEecCCCCCEEEEEeC---------CCcEEEEECCC
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFI--------GHSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRV 308 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~--------~h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~ 308 (359)
+..+..+.+.+.|.............+. ........+.++|++..++++... .+.|.++|+.+
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 4555678999999865221111000000 011122236899998866666542 35799999999
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCcc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. +.+.++.... ..+.|.|+|+++ .++.... .++.|.++|..++++
T Consensus 360 ~-kvv~~I~vg~-~P~gia~spDg~~~lyv~n~---~s~~VsVID~~t~kv 405 (426)
T 3c75_H 360 G-ERINKIELGH-EIDSINVSQDAEPLLYALSA---GTQTLHIYDAATGEE 405 (426)
T ss_dssp C-CEEEEEEEEE-EECEEEECCSSSCEEEEEET---TTTEEEEEETTTCCE
T ss_pred C-eEEEEEECCC-CcCeEEEccCCCEEEEEEcC---CCCeEEEEECCCCCE
Confidence 8 6777774322 478999999999 6655542 278899999998875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.001 Score=58.05 Aligned_cols=162 Identities=9% Similarity=0.003 Sum_probs=100.9
Q ss_pred EEEEecCCCce--eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 158 QLRKVAHQGCV--NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 158 ~~~~~~H~~~V--~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
+.+.++|...- ..+.|.. + .++.+.+.+|.|+++|+.+ .+.+..+......+.++
T Consensus 45 Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~T---------------------gkv~~~~l~~~~FgeGi 101 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLES---------------------AQPVWMERLGNIFAEGL 101 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSC---------------------SSCSEEEECTTCCEEEE
T ss_pred EEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCC---------------------CcEEeEECCCCcceeEE
Confidence 35566787544 6888874 3 7888889999999999987 44444441212223345
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.. +..++++.-.++.+.+||..+ .+.+ ..+..- ..-..++ +++..+++| ..++.|.++|..+. +.+.+
T Consensus 102 t~~--g~~Ly~ltw~~~~v~V~D~~T-l~~~---~ti~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~-~v~~~ 170 (268)
T 3nok_A 102 ASD--GERLYQLTWTEGLLFTWSGMP-PQRE---RTTRYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGF-ALVGA 170 (268)
T ss_dssp EEC--SSCEEEEESSSCEEEEEETTT-TEEE---EEEECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTTC-CEEEE
T ss_pred EEe--CCEEEEEEccCCEEEEEECCc-CcEE---EEEeCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCCC-eEEEE
Confidence 554 333555566789999999987 4433 223221 1113344 456635555 45889999999987 55655
Q ss_pred eec--CC---CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 316 FKA--HN---ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 316 ~~~--h~---~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.. +. ..+|.+.|. +|.+. ...- ....|.+.|+.+|+|
T Consensus 171 I~V~~~g~~v~~lNeLe~~-dG~ly-anvw---~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 171 VQVKLRGQPVELINELECA-NGVIY-ANIW---HSSDVLEIDPATGTV 213 (268)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEE-EEET---TCSEEEEECTTTCBE
T ss_pred EEeCCCCcccccccccEEe-CCEEE-EEEC---CCCeEEEEeCCCCcE
Confidence 532 22 246788888 66533 2221 256788999999876
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0036 Score=57.89 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=91.5
Q ss_pred eEEEeCCCCcEEEEEe---------CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-------CCceE
Q 018235 170 RIRAMTQNPHICASWA---------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-------KDEGY 233 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 233 (359)
.+.++|++..++++.. .++.|.+||..+ .+.+..+.-. ...-.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---------------------~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---------------------LLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CeEEEEEECCCccccccCCCCc
Confidence 3999999966655542 467899999987 3444443211 12345
Q ss_pred EEEeCCCCCCeEEEEcC--CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
.+.++|+++ +|+.+.. ++.|.++|+.+ .+.+ ..+.- ... ....|.+...|++.+.||.+.+.++....+
T Consensus 141 ~~a~spDGk-~lyVan~~~~~~VsVID~~t-~~vv---~tI~v--~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 141 MTSLTPDGK-TLLFYQFSPAPAVGVVDLEG-KAFK---RMLDV--PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp GEEECTTSS-EEEEEECSSSCEEEEEETTT-TEEE---EEEEC--CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred eEEEcCCCC-EEEEEEcCCCCeEEEEECCC-CcEE---EEEEC--CCc--ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 799999998 6666543 68999999987 4433 22221 111 223465555888889999999999986313
Q ss_pred ceEEeecC----CCCE-EEEEEc-CCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 312 ALTSFKAH----NADV-NVISWN-RCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 312 ~~~~~~~h----~~~V-~~i~~s-~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.......+ ..++ +...|. ++|+++ |... .+.+.+.|...+.
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~----~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTY----TGKIHQIDLSSGD 258 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEBT----TSEEEEEECTTSS
T ss_pred EEEeecceeccccccccccceeEcCCCcEE-EEeC----CCEEEEEECCCCc
Confidence 32211111 1122 123554 566443 4333 4568888876553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.64 E-value=0.035 Score=51.60 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=103.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+...+.+..+.|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CCCEEEECSSCSCEEEEEEETTT
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-----------------CCcceEEEeCCCCCcccEEEEecC
Confidence 345677889999987657777767788898888764100 011222232223345566666655
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEEeecCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
..++++-...+.|.+.++.. .... ..+...-....+|+++|.+..++.+-.. .+.|...++... .....+...-
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g-~~~~---~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l 245 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKG-VKRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 245 (400)
T ss_dssp TEEEEEETTTTEEEEECTTT-CSEE---EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSC
T ss_pred CceEEEECCCCeEEEEeCCC-CceE---EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCC
Confidence 43666666778899998864 2221 1122233457899999976646666543 478998888764 2222223333
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+.|++++.+..|.|.... ...|...+..
T Consensus 246 ~~P~glavd~~~~~lY~aD~~---~~~I~~~d~d 276 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSK---LHSISSIDVN 276 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECC---CCEEEEEeCC
Confidence 568999999988888887542 4566666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0037 Score=53.82 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=100.2
Q ss_pred EEEEEecCCCc--eeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-c
Q 018235 157 LQLRKVAHQGC--VNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-E 231 (359)
Q Consensus 157 ~~~~~~~H~~~--V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 231 (359)
.+.+.++|... +..+.|.+ + .++.+.+..| .|+.+|+.+ ++.+..+..... .
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t---------------------gkv~~~~~l~~~~f 66 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET---------------------GRILQRAEVPPPYF 66 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT---------------------CCEEEEEECCTTCC
T ss_pred EEEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC---------------------CCEEEEEeCCCCcc
Confidence 34556688854 66999987 4 6777777654 899999987 444444433222 2
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+.+++.. +..+++..-.++.+.+||..+ .+.+ ..+..... =..++ +++..+++|-+ ++.|.++|..+. +
T Consensus 67 geGi~~~--~~~ly~ltw~~~~v~v~D~~t-l~~~---~ti~~~~~-Gwglt--~dg~~L~vSdg-s~~l~~iDp~t~-~ 135 (243)
T 3mbr_X 67 GAGIVAW--RDRLIQLTWRNHEGFVYDLAT-LTPR---ARFRYPGE-GWALT--SDDSHLYMSDG-TAVIRKLDPDTL-Q 135 (243)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEE---EEEECSSC-CCEEE--ECSSCEEEECS-SSEEEEECTTTC-C
T ss_pred eeEEEEe--CCEEEEEEeeCCEEEEEECCc-CcEE---EEEeCCCC-ceEEe--eCCCEEEEECC-CCeEEEEeCCCC-e
Confidence 3344443 332555556788999999987 3333 23322111 13444 56665777754 788999999987 5
Q ss_pred ceEEeec--CC---CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSFKA--HN---ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~~~--h~---~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+.++.. +. ..+|-+.|. +|.+. ...- ....|.+.|+.+|+|
T Consensus 136 ~~~~I~V~~~g~~~~~lNeLe~~-~G~ly-anvw---~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 136 QVGSIKVTAGGRPLDNLNELEWV-NGELL-ANVW---LTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEEECEETTEECCCEEEEEEE-TTEEE-EEET---TTTEEEEECTTTCBE
T ss_pred EEEEEEEccCCcccccceeeEEe-CCEEE-EEEC---CCCeEEEEECCCCCE
Confidence 5666532 21 346778877 55533 2221 145788889998876
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00087 Score=65.08 Aligned_cols=122 Identities=8% Similarity=0.027 Sum_probs=81.8
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC-----c-----ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA-----T-----WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~-----~-----~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
..+++.++|+|...++++-.+.+|.++|+.+.. + .+. ... .-.....-++|+|+| +.+.+.-.|+.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~--~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsq 353 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV--AEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQ 353 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE--ECC-BCCSCEEEEEECTTS-EEEEEETTTTE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE--EEc-CCCCCcceEEECCCC-eEEEEEecCCc
Confidence 456899999999667777788999999997521 0 010 111 123457789999999 58889999999
Q ss_pred EEEEECCCC---------CCceEEeecCCCCE-----EEEEEcCCCCeEEEEeeecccceE----------EEEEeCcCC
Q 018235 301 IAIWDTRVG---------KSALTSFKAHNADV-----NVISWNRCWLAVCWHLEVMMEHFL----------FMILDCSRG 356 (359)
Q Consensus 301 I~iwD~r~~---------~~~~~~~~~h~~~V-----~~i~~s~~~~~l~~~~~~~~~d~~----------i~iwd~~~g 356 (359)
|.+||+... ...+.++..|-.+- ..+.++|+|++|+.... ++.|.. -.++|++.+
T Consensus 354 V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk-~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 354 VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK-FSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES-CCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC-CCccccccCCCCCCCcceEEEcCCC
Confidence 999998761 14555666554421 12355899999987754 333332 267777655
Q ss_pred c
Q 018235 357 E 357 (359)
Q Consensus 357 ~ 357 (359)
+
T Consensus 433 ~ 433 (595)
T 1fwx_A 433 K 433 (595)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00097 Score=62.68 Aligned_cols=137 Identities=7% Similarity=-0.128 Sum_probs=83.9
Q ss_pred CCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc--
Q 018235 176 QNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD-- 249 (359)
Q Consensus 176 ~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs-- 249 (359)
++..++++...+ +.|.++|..+ .+.+..+..-..+ .+.++|++. +|+.+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t---------------------~~vv~~I~vG~~P--gia~SpDgk-~lyVan~~ 138 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST---------------------GRILGMTDGGFLP--HPVAAEDGS-FFAQASTV 138 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECSSC--EEEECTTSS-CEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC---------------------CEEEEEEECCCCC--ceEECCCCC-EEEEEecc
Confidence 333455555544 7999999987 4555555433334 899999998 555554
Q ss_pred --------CCCcEEEEecCCCCcceecCcccc--C---CCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEE
Q 018235 250 --------CNSCIYLWEPASDATWNVDPNPFI--G---HSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 250 --------~dg~I~lwd~~~~~~~~~~~~~~~--~---h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~ 315 (359)
.++.|.++|..+ .+.... ..+. . .......+.|+|+++.++++... +++|.+.|+.+. +.+.+
T Consensus 139 ~~~~~~G~~~~~VsviD~~t-~~vv~~-I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-kvv~~ 215 (426)
T 3c75_H 139 FERIARGKRTDYVEVFDPVT-FLPIAD-IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-TFDRM 215 (426)
T ss_dssp EEETTEEEEEEEEEEECTTT-CCEEEE-EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEE
T ss_pred ccccccCCCCCEEEEEECCC-CcEEEE-EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-eEEEE
Confidence 467899999987 333310 1111 0 01234568999999944444433 689999999997 55555
Q ss_pred eecCCC-------CEEEEEEcCCCCeEEEEe
Q 018235 316 FKAHNA-------DVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 316 ~~~h~~-------~V~~i~~s~~~~~l~~~~ 339 (359)
+..-.. .-.-+.++++|+++..+.
T Consensus 216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred EEcCCceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 542111 011256677777766655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.042 Score=55.75 Aligned_cols=168 Identities=8% Similarity=-0.062 Sum_probs=102.5
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.....+..|.|.+....++.+-...+.|+.+++..... .......+........+|++.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~-----------------~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC-----------------CcceeEEEecCCCCcceeeeeecC
Confidence 344567788999986657777777788898888865110 011222232222334456655566
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEeecCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~ 320 (359)
..++++-...+.|.+.++.. .... ..+...-....+|+++|.+..++.+-... +.|...++... .....+...-
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG-~~~~---~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l 557 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKG-VKRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 557 (791)
T ss_dssp TEEEEEETTTTEEEEEETTS-SSEE---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred CcEEEEecCCCeEEEEeCCC-CeEE---EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCC
Confidence 43666767788999999864 2221 11222345688999999866477776444 78988888754 3222233333
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+.|++.+.+..|.|.... ...|...+..
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~---~~~I~~~d~d 588 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSK---LHSISSIDVN 588 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEeCC---CCcEEEEecC
Confidence 568999999888888887542 4556666654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.40 E-value=0.043 Score=49.28 Aligned_cols=161 Identities=7% Similarity=-0.110 Sum_probs=98.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+.|.+.+..++.+-...+.|+.+++... ......+........+|++.+.+..++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~--------------------~~~~~~~~~~l~~p~glavd~~~g~ly 94 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGEKLY 94 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS--------------------SCCCEEEEECCSCCCEEEEETTTTEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCC--------------------CceEEEEcCCCCCccEEEEEcCCCeEE
Confidence 356688999866577777777889999988761 111112222122334566655444356
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
++-...+.|.++++.. .... ..+........+|++.|.+..++.+-. ..+.|...++... .....+...-...+
T Consensus 95 ~~d~~~~~I~~~~~dG-~~~~---~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pn 169 (318)
T 3sov_A 95 WTDSETNRIEVSNLDG-SLRK---VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPN 169 (318)
T ss_dssp EEETTTTEEEEEETTS-CSCE---EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEE
T ss_pred EEECCCCEEEEEECCC-CcEE---EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCcc
Confidence 6666678899999864 2211 112233456789999997664666653 3678888887753 22222222234578
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.|+|++++..|.|.... .+.|..++..
T Consensus 170 glavd~~~~~lY~aD~~---~~~I~~~d~d 196 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAK---LNFIHKSNLD 196 (318)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred EEEEeccCCEEEEEECC---CCEEEEEcCC
Confidence 99999988877777542 4567776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.015 Score=58.80 Aligned_cols=225 Identities=11% Similarity=-0.033 Sum_probs=114.3
Q ss_pred CceeeeChhHhhhhhcccccCcceeEEEE-eccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIV-RDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~-pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
.+++..|+....--|.+. ---++.|. ||+ .+++.+....+.+...|+|+++..- .
T Consensus 157 ~~~vlld~n~~a~~~~~~---~~~~~~~S~PDG-----------~~lAy~~~~~G~~~~~l~v~dl~~g----~------ 212 (751)
T 2xe4_A 157 AEEVIIDVNQVAEGKAFC---DVMEVKPAPPEH-----------DLVAFSVDMSGNEVYTIEFKRISDP----S------ 212 (751)
T ss_dssp TCEEEEEHHHHTTTCSCC---EEEEEEECTTTT-----------CEEEEEEESSSSSCEEEEEEETTCT----T------
T ss_pred CCEEEechhHhccCCCeE---EEeeeEecCCCC-----------CEEEEEEeCCCCceEEEEEEECCCC----C------
Confidence 468888886553333320 12356788 886 3566666655555667888877310 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNA 201 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~ 201 (359)
+. -...+ ......+.|+|++..++++.... ..|+++++....
T Consensus 213 ----------------------~~---l~~~~-------~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~-- 258 (751)
T 2xe4_A 213 ----------------------QT---IADKV-------SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ-- 258 (751)
T ss_dssp ----------------------CC---CCCCE-------EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG--
T ss_pred ----------------------Ee---CCccc-------cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc--
Confidence 00 00011 11235688999996666664432 257777776511
Q ss_pred cccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCCCCeEEEEc-C--CCcEEEEecCCCC-cc--eecCccccC
Q 018235 202 LAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPITTGRLVTGD-C--NSCIYLWEPASDA-TW--NVDPNPFIG 274 (359)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~sgs-~--dg~I~lwd~~~~~-~~--~~~~~~~~~ 274 (359)
.....++.. ......++.|||++. +|+..+ . ...|+++|+..+. .+ . .....
T Consensus 259 -----------------~~~~lv~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~---~l~~~ 317 (751)
T 2xe4_A 259 -----------------SEDVCLYEEHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKGNAHNTLE---IVRPR 317 (751)
T ss_dssp -----------------GGCEEEEECCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSCTTCCCEE---ESSCC
T ss_pred -----------------hhcEEEEecCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCCCCCceeE---EeecC
Confidence 112233332 223456789999998 554433 2 3357788886531 22 1 11223
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCC----CcEEEEECCCCCCceEE-eecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVGKSALTS-FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~~~~~~~-~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
.......+.|+..+. +++....+ ..|..+|+.++ ..... +..|...+..-.|.+.+..|++..... ....|.
T Consensus 318 ~~~~~~s~~~~~g~~-l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~-g~~~l~ 394 (751)
T 2xe4_A 318 EKGVRYDVQMHGTSH-LVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA-GLTRIW 394 (751)
T ss_dssp CTTCCEEEEEETTTE-EEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEECSSEEEEEEEET-TEEEEE
T ss_pred CCCceEEEeeeeCCE-EEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEECCEEEEEEEeC-CEEEEE
Confidence 345556666654443 55554443 35667777642 12223 333444433233344455665554421 123355
Q ss_pred EEeC
Q 018235 350 ILDC 353 (359)
Q Consensus 350 iwd~ 353 (359)
+++.
T Consensus 395 ~~dl 398 (751)
T 2xe4_A 395 TMMA 398 (751)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0097 Score=53.25 Aligned_cols=177 Identities=11% Similarity=-0.050 Sum_probs=93.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc-cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC-CCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL-NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP-ITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ 243 (359)
.....+++.+++ .++.++..++.|..|+..... ..+........ ....................+|++.+ .+
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-- 92 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN---KAFCENSTDAEKRPLCGRTYDISYNLQNN-- 92 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCC---HHHHTTCCCGGGHHHHCCEEEEEEETTTT--
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEeccccccc---ccccccccchhccccCCCCceEEEcCCCC--
Confidence 345677888887 656667888999999876511 00000000000 00000000000000012467899987 54
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecC-CCCCEEEEEeC-----------------CCcEEEE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSP-TEPDVFASCSV-----------------DGHIAIW 304 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp-~~~~~las~s~-----------------Dg~I~iw 304 (359)
.|+.++..+.|..+|... +..........+ .....+++++.| ++. ++++-.. ++.|..|
T Consensus 93 ~l~v~d~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEG-GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EEEEEETTTEEEEECTTC-EECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred cEEEEECCCCEEEEeCCC-CEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEE
Confidence 455555555688888754 221100011111 123578999999 887 7766533 3678888
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|..++ . +..+...-...+.|+|++++..+.+.... .+.|..++...
T Consensus 171 d~~~~-~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~---~~~I~~~~~~~ 216 (322)
T 2fp8_A 171 DPSTK-E-TTLLLKELHVPGGAEVSADSSFVLVAEFL---SHQIVKYWLEG 216 (322)
T ss_dssp ETTTT-E-EEEEEEEESCCCEEEECTTSSEEEEEEGG---GTEEEEEESSS
T ss_pred eCCCC-E-EEEeccCCccCcceEECCCCCEEEEEeCC---CCeEEEEECCC
Confidence 88764 2 22222122345789999999866555332 45677776653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0087 Score=60.54 Aligned_cols=162 Identities=9% Similarity=0.030 Sum_probs=89.7
Q ss_pred ceeeEEEe-CCCCcEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCc-EEecCCCCceEEEEeCCC
Q 018235 167 CVNRIRAM-TQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 167 ~V~~i~~~-p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~ 240 (359)
.+...+|+ |+|..++.+...+| +|+++|+.... ..+ ..+.. ...++.|+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~--------------------~~l~~~~~~---~~~~~~WspD 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS--------------------QTIADKVSG---TNGEIVWGPD 231 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT--------------------CCCCCCEEE---ECSCCEECSS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC--------------------EeCCccccC---ceeeEEEecC
Confidence 67889999 99955555555444 49999998720 110 00111 1236899999
Q ss_pred CCCeEEEEcCC-----CcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeC--CCcEEEEECCCCCCc
Q 018235 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSA 312 (359)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~ 312 (359)
+. .|+....+ ..|+++++.++.... ...+. .+......+.|||++..++++... ...|.++|+.++...
T Consensus 232 g~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~--~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 HT-SLFYVTKDETLRENKVWRHVMGKLQSED--VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TT-EEEEEEECTTCCEEEEEEEETTSCGGGC--EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred CC-EEEEEEECCCCCCCEEEEEECCCCchhc--EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 98 44444433 257777775532110 01122 223446688999999955555433 345888898875222
Q ss_pred e--EEe-ecCCCCEEEEEEcCCCCeEEEEeeec-ccceEEEEEeCcC
Q 018235 313 L--TSF-KAHNADVNVISWNRCWLAVCWHLEVM-MEHFLFMILDCSR 355 (359)
Q Consensus 313 ~--~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~-~~d~~i~iwd~~~ 355 (359)
. ..+ ........++.|+. +..|++..... .....|..++..+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred ceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3 334 33445566677665 44444443321 2234566666543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.13 Score=47.47 Aligned_cols=160 Identities=10% Similarity=-0.100 Sum_probs=95.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+.+..++++-...+.|.+.++.. ......+......-.+|++.|.+..++
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg---------------------~~~~~l~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG---------------------AHRKVLLWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTS---------------------CSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC---------------------CceEEeecCCCCCCcEEEEEcCCCeEE
Confidence 34567888876557777777777888877765 111222323334567899998765344
Q ss_pred EEEcCC-CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 246 VTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 246 ~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
++-... +.|...++....... .....-...+.|+|+|.+..++++-+..+.|..+|+... .....+........
T Consensus 218 ~td~~~~~~I~r~~~dG~~~~~----~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~ 292 (386)
T 3v65_B 218 WTDWGNTPRIEASSMDGSGRRI----IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPF 292 (386)
T ss_dssp EEECSSSCEEEEEETTSCSCEE----EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEE
T ss_pred EeccCCCCEEEEEeCCCCCcEE----EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCce
Confidence 544444 678888875421111 111223457899999877768888888899999998754 22222332334466
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|++. +..+.|.... .+.|..++..+|
T Consensus 293 giav~--~~~ly~td~~---~~~V~~~~~~~G 319 (386)
T 3v65_B 293 AITVF--EDSLYWTDWH---TKSINSANKFTG 319 (386)
T ss_dssp EEEEE--TTEEEEEETT---TTEEEEEETTTC
T ss_pred EEEEE--CCEEEEeeCC---CCeEEEEECCCC
Confidence 77772 3455555432 455666654343
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.12 Score=46.93 Aligned_cols=159 Identities=10% Similarity=-0.090 Sum_probs=96.7
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+.+.+++.+-...+.|.+.++... .....+......-.+|++.|.+..++
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------------------~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------------------HRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---------------------ceEEEEeCCCCCcceEEEecCcCeEE
Confidence 345778888766577788777889999988751 11222223334567899998765355
Q ss_pred EEEcCC-CcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 246 VTGDCN-SCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 246 ~sgs~d-g~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
++-... +.|...++.. ... ..+ ...-...+.|+|+|.+..++.+-+..+.|..+|+... .....+...-...
T Consensus 175 ~td~~~~~~I~r~~~dG-~~~----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P 248 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDG-SGR----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHP 248 (349)
T ss_dssp EEECSSSCEEEEEETTS-CSC----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSE
T ss_pred EeccCCCCEEEEEeCCC-CCc----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCc
Confidence 555445 7788888754 221 112 1223457899999977768888888899999998754 2222232233445
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..|++. +..+.|.... .+.|..++..+|
T Consensus 249 ~giav~--~~~ly~td~~---~~~V~~~~~~~G 276 (349)
T 3v64_C 249 FAITVF--EDSLYWTDWH---TKSINSANKFTG 276 (349)
T ss_dssp EEEEEE--TTEEEEEETT---TTEEEEEETTTC
T ss_pred eEEEEE--CCEEEEecCC---CCeEEEEEccCC
Confidence 677773 3455555332 444555553333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0055 Score=61.22 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=39.5
Q ss_pred CcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|.|..||+.++ +.+..+. +..+++...+...+.+++.+.. ++.+++||..+|++
T Consensus 457 g~l~A~D~~tG-~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~----dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 457 GRLLAWDPVAQ-KAAWSVE-HVSPWNGGTLTTAGNVVFQGTA----DGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEETTTT-EEEEEEE-ESSSCCCCEEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred cEEEEEeCCCC-cEEeecC-CCCCCcCcceEeCCCEEEEECC----CCcEEEEECCCCce
Confidence 78999999998 6666664 3344555556667777776643 88899999998875
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.012 Score=59.03 Aligned_cols=55 Identities=15% Similarity=0.011 Sum_probs=39.4
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.|+.||+.++ +.+..+..+. +++...+...+.+++.+.. ++.|+.||..+|++
T Consensus 454 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~gt~----dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 454 SGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAGNLVFEGSA----DGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred ceeEEEEECCCC-CeEeEccCCC-CccCccceECCCEEEEECC----CCcEEEEECCCCcc
Confidence 378999999998 6666665443 3343455666777766644 88999999999875
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.15 Score=46.12 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=97.6
Q ss_pred CceeeEEEeCCC----C---cEEEEEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC------CC-
Q 018235 166 GCVNRIRAMTQN----P---HICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG------HK- 229 (359)
Q Consensus 166 ~~V~~i~~~p~~----~---~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~- 229 (359)
+.+|.+..-|.- . ..+|+... +++|.+|++.... .++..+.. ..
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--------------------~~l~~i~~~~~pv~t~~ 127 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--------------------GTLQSMTDPDHPIATAI 127 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--------------------CCEEECSCTTSCEECCC
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--------------------CceeeccccccCcCCCC
Confidence 778888877621 1 23455545 6899999885411 12222211 11
Q ss_pred CceEEEEe--CCCC-CCeEEEEcCCCcEEEEecCCC--Ccce-ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 230 DEGYAIDW--NPIT-TGRLVTGDCNSCIYLWEPASD--ATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 230 ~~v~~l~~--sp~~-~~~l~sgs~dg~I~lwd~~~~--~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
..+++|+. +|.. ..+++....+|.+..|++... +... ...+.|. -.+.++.+...+... .|..+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYG-RLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTT-EEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCC-eEEEecccceEEE
Confidence 46777777 7753 335777788899999988431 1111 1113443 345788999998777 7777888766777
Q ss_pred EECCCCC----CceEEee-c-CCCCEEEEEE--cCCCC-eEEEEeeecccceEEEEEeCc
Q 018235 304 WDTRVGK----SALTSFK-A-HNADVNVISW--NRCWL-AVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 304 wD~r~~~----~~~~~~~-~-h~~~V~~i~~--s~~~~-~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+|.+-.. ..+..+. . ....+-.|+. .+++. +|+.++. .+..+.+|+..
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ---G~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ---GNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG---GGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC---CCCEEEEEECC
Confidence 7755221 2233331 2 2357888887 45555 6666654 26778888875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.02 Score=53.79 Aligned_cols=154 Identities=8% Similarity=0.078 Sum_probs=88.5
Q ss_pred eeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
...+++.|. +..++++-.. +.|+.+|+.. ..+..+........+|+|++++. +|+
T Consensus 139 P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~----------------------~~v~~~~~~~~~P~~ia~d~~G~-~ly 194 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK----------------------EYVSTVYSGLSKVRTICWTHEAD-SMI 194 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT-EEEEEEETTT----------------------TEEEEEECCCSCEEEEEECTTSS-EEE
T ss_pred CCEEEECCCCCCeEEEEeCC-CcEEEEECCC----------------------CEEEEEecCCCCcceEEEeCCCC-EEE
Confidence 457788873 3255555333 7788888765 22333333445678999999987 555
Q ss_pred EEcC-CC----cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee-cCC
Q 018235 247 TGDC-NS----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK-AHN 320 (359)
Q Consensus 247 sgs~-dg----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~-~h~ 320 (359)
.++. .+ .+...+. . +.+.. ...+. ......+++++|.+..++++-..++.|..++.... ....... ...
T Consensus 195 vad~~~~~~~~~v~~~~~-~-g~~~~-~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~~~ 269 (430)
T 3tc9_A 195 ITNDQNNNDRPNNYILTR-E-SGFKV-ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQDS 269 (430)
T ss_dssp EEECCSCTTSEEEEEEEG-G-GTSCS-EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECSSS
T ss_pred EEeCCCCcccceEEEEeC-C-Cceee-eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcCCC
Confidence 5543 22 2333333 2 22210 01111 12345678899943338888888899999998865 2211111 122
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
...+.|+|+|++.+|.+.... .+.|..++.
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~---~~~I~~~~~ 299 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVN---QHYILRSDY 299 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETT---TTEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECC---CCEEEEEeC
Confidence 456889999999965555332 455666553
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.036 Score=49.08 Aligned_cols=148 Identities=11% Similarity=-0.019 Sum_probs=82.5
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+...+.++...+++ . +..++.++.|..||... ..+..+......+.++...+++.
T Consensus 135 ~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~g----------------------~~~~~~~~~~~~~~~~~~d~~g~- 189 (330)
T 3hxj_A 135 KKAIYATPIVSEDG-T-IYVGSNDNYLYAINPDG----------------------TEKWRFKTNDAITSAASIGKDGT- 189 (330)
T ss_dssp SSCCCSCCEECTTS-C-EEEECTTSEEEEECTTS----------------------CEEEEEECSSCCCSCCEECTTCC-
T ss_pred CCceeeeeEEcCCC-E-EEEEcCCCEEEEECCCC----------------------CEeEEEecCCCceeeeEEcCCCE-
Confidence 44455666666666 3 44456778888888762 22223333333455666666654
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
|..++ +.|..+| .+ +... ..+......+.++...+++. +..++.++.|..+|. ++ ..+..+......+
T Consensus 190 -l~v~t--~~l~~~d-~~-g~~~---~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 190 -IYFGS--DKVYAIN-PD-GTEK---WNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIE 257 (330)
T ss_dssp -EEEES--SSEEEEC-TT-SCEE---EEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECT-TS-CEEEEEECSSCCC
T ss_pred -EEEEe--CEEEEEC-CC-CcEE---EEEccCCcceeceEECCCCe--EEEEcCCCeEEEECC-CC-CEeEEeeCCCCcc
Confidence 55555 7888999 44 3322 12223345677788888875 444666777888874 33 4455554444434
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.++...+++.+.+.+ . ++.|..++.
T Consensus 258 ~~~~~~~~g~l~v~t-~----~ggl~~~d~ 282 (330)
T 3hxj_A 258 SSPVIGNTDTIYFGS-Y----DGHLYAINP 282 (330)
T ss_dssp SCCEECTTSCEEEEC-T----TCEEEEECT
T ss_pred ccceEcCCCeEEEec-C----CCCEEEECC
Confidence 455566566544332 2 334555564
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.17 Score=43.73 Aligned_cols=165 Identities=8% Similarity=0.014 Sum_probs=98.0
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~ 240 (359)
+-.+.+..++++|++..++|+...++.|...|... +.+..+ .+. ....+|++.+.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g----------------------~v~~~i~l~g~-~D~EGIa~~~~ 80 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG----------------------DLIRTIPLDFV-KDLETIEYIGD 80 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC----------------------CEEEEEECSSC-SSEEEEEECST
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC----------------------CEEEEEecCCC-CChHHeEEeCC
Confidence 45578999999998767777778888988888764 222222 332 35668888887
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCc-ceecCccc----cCCCCCeEEEEecCCCCCEEEEEeCCC-cEEEEECCCCCCceE
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDAT-WNVDPNPF----IGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~----~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~ 314 (359)
+. ++++.-.++.+.++++...+. +.+....+ .......+.|+|+|.+..+++++-.+. .|..|+-......+.
T Consensus 81 g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 81 NQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 75 667766778899998866443 11111111 123456899999999874555554443 445555111111222
Q ss_pred Eee-------cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SFK-------AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~~-------~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+. .+...+..|+++|....+..-.. +...|..+|..
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~---~s~~L~~~d~~ 203 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH---ESRALQEVTLV 203 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEET---TTTEEEEECTT
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEEC---CCCeEEEEcCC
Confidence 221 13446789999997643333222 14555555543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.03 Score=54.36 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=52.5
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC----------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceE
Q 018235 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK----------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL 347 (359)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~----------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~ 347 (359)
...++.++|+|+.+++++..+.+|.++|+.+.. ..+..-..-......++|+++| .+...+. .+..
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~---ldsq 353 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLF---LDSQ 353 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEET---TTTE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEe---cCCc
Confidence 445789999999888888899999999999641 0122212234568899999999 5444443 3777
Q ss_pred EEEEeCcC
Q 018235 348 FMILDCSR 355 (359)
Q Consensus 348 i~iwd~~~ 355 (359)
+..|+...
T Consensus 354 V~kwdi~~ 361 (595)
T 1fwx_A 354 VVKWNIED 361 (595)
T ss_dssp EEEEEHHH
T ss_pred EEEEEhhH
Confidence 88898754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.22 Score=44.34 Aligned_cols=159 Identities=12% Similarity=-0.042 Sum_probs=96.3
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+.+.+++++-...+.|.++++... .....+........+++..|.+..++
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---------------------~~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------------------KRKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------------------SEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---------------------ceEEEEECCCCCcceEEeCCCCCEEE
Confidence 456788888755477777778899999988651 11112222234567899998665244
Q ss_pred EEEcCC-CcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ec--CC
Q 018235 246 VTGDCN-SCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA--HN 320 (359)
Q Consensus 246 ~sgs~d-g~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~--h~ 320 (359)
++.... +.|...++.. ... ..+ ...-...+.|+|+|.+..++.+-+..+.|..+|+... . ...+ .. .-
T Consensus 136 ~~d~~~~~~I~~~~~dG--~~~---~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~-~~~~~~~~~~~ 208 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNG--VDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-N-RKTILEDEKRL 208 (316)
T ss_dssp EEECSSSCEEEEEETTS--CCE---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-S-CEEEEECTTTT
T ss_pred EEccCCCCeEEEEcCCC--CCe---EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-c-eEEEeecCCcc
Confidence 444333 6788888753 211 112 1223467899999987757777778889999999753 2 2222 21 22
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.....|++. +..+.|.... .+.|..++..+|.
T Consensus 209 ~~P~giav~--~~~ly~~d~~---~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 209 AHPFSLAVF--EDKVFWTDII---NEAIFSANRLTGS 240 (316)
T ss_dssp SSEEEEEEE--TTEEEEEETT---TTEEEEEETTTCC
T ss_pred CCcEEEEEE--CCEEEEEECC---CCeEEEEeCCCCc
Confidence 345677774 3455555432 4556666655443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.036 Score=49.09 Aligned_cols=149 Identities=11% Similarity=-0.033 Sum_probs=87.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
....+.++...+++ .++++ + +.|..+| .. ...+..+......+.++...+++
T Consensus 175 ~~~~~~~~~~d~~g-~l~v~-t--~~l~~~d-~~---------------------g~~~~~~~~~~~~~~~~~~~~~g-- 226 (330)
T 3hxj_A 175 NDAITSAASIGKDG-TIYFG-S--DKVYAIN-PD---------------------GTEKWNFYAGYWTVTRPAISEDG-- 226 (330)
T ss_dssp SSCCCSCCEECTTC-CEEEE-S--SSEEEEC-TT---------------------SCEEEEECCSSCCCSCCEECTTS--
T ss_pred CCCceeeeEEcCCC-EEEEE-e--CEEEEEC-CC---------------------CcEEEEEccCCcceeceEECCCC--
Confidence 34456666666666 44443 3 7888888 33 33344444444557777777776
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.|..++.++.|..++.. +... ..+......+..+...+++. |..++.+|.|..+|. ++ ..+..+......+
T Consensus 227 ~l~v~t~~~gl~~~~~~--g~~~---~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~ 297 (330)
T 3hxj_A 227 TIYVTSLDGHLYAINPD--GTEK---WRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DG-TEKWNFETGSWII 297 (330)
T ss_dssp CEEEEETTTEEEEECTT--SCEE---EEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TS-CEEEEEECSSCCC
T ss_pred eEEEEcCCCeEEEECCC--CCEe---EEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CC-cEEEEEEcCCccc
Confidence 46666667888888753 2222 12222223333455555664 666778888999995 44 5555555455567
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.++...+++.+.+.+ . ++.+.+....
T Consensus 298 ~~~~~d~~g~l~~gt-~----~G~~~~~~~~ 323 (330)
T 3hxj_A 298 ATPVIDENGTIYFGT-R----NGKFYALFNL 323 (330)
T ss_dssp SCCEECTTCCEEEEC-T----TSCEEEEEC-
T ss_pred cceEEcCCCEEEEEc-C----CCeEEEEecc
Confidence 777777778755533 3 5566665443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.036 Score=52.87 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=92.2
Q ss_pred eeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC----CCceEEEEe-----
Q 018235 168 VNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH----KDEGYAIDW----- 237 (359)
Q Consensus 168 V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~----- 237 (359)
...++|.|. ..+++++....+.|++.|+.. ..+.++..- ......|+|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKIE 198 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCBT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeeccc
Confidence 567889984 436777766667788888876 222232211 225789999
Q ss_pred --CCCCCCeEEEEcCCC-c------EEEEecCCCCccee-c-CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 238 --NPITTGRLVTGDCNS-C------IYLWEPASDATWNV-D-PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 238 --sp~~~~~l~sgs~dg-~------I~lwd~~~~~~~~~-~-~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
++++. .|+.++..+ . |.+.+....+.+.. . .+.+.. -.....++.+|.+..++++...++.|..+|+
T Consensus 199 ~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 199 GYADEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccCCCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99987 555554443 2 55665333123320 0 011111 1233567889976668888889999999998
Q ss_pred C-------CCCC-----c-----eEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 307 R-------VGKS-----A-----LTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 307 r-------~~~~-----~-----~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
. ++.. + ...+ .........|+|+|++..|...... .+.|+.++
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~---~h~I~kid 338 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN---NHYFMRSD 338 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC---CCEEEEEe
Confidence 7 4411 0 1122 1223446789999999954443321 55566643
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0067 Score=60.62 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=52.2
Q ss_pred CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-CCCEEEEEEcC
Q 018235 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNR 330 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~s~ 330 (359)
|.|..||+.+ ++.+ ..+. +...+....+...+. +++.++.||.+++||.+++ +.+.++... .....-+.|..
T Consensus 457 g~l~A~D~~t-G~~~---W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 457 GRLLAWDPVA-QKAA---WSVE-HVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp EEEEEEETTT-TEEE---EEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEE
T ss_pred cEEEEEeCCC-CcEE---eecC-CCCCCcCcceEeCCC-EEEEECCCCcEEEEECCCC-ceeeeeeCCCCcccCCEEEEe
Confidence 7799999987 4422 1121 223344445666676 7777899999999999998 777777533 22334456777
Q ss_pred CCCeEEEE
Q 018235 331 CWLAVCWH 338 (359)
Q Consensus 331 ~~~~l~~~ 338 (359)
+|+.++..
T Consensus 530 ~G~~~v~~ 537 (677)
T 1kb0_A 530 DGRQYVSV 537 (677)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 88755443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.62 E-value=0.35 Score=43.16 Aligned_cols=159 Identities=11% Similarity=-0.034 Sum_probs=97.4
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.....+++.+.+.+++.+-...+.|.++++... .....+......-.+|++.|.+. .|
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------------------~~~~l~~~~~~~P~giavdp~~g-~l 136 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---------------------LRKVLFWQELDQPRAIALDPSSG-FM 136 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSSEEEEEEEGGGT-EE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCC---------------------cEEEEEeCCCCCccEEEEeCCCC-EE
Confidence 456778888765578787777889999998751 11122223334567888888764 44
Q ss_pred EEEc--CCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 246 VTGD--CNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 246 ~sgs--~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
+..+ ..+.|...++.- .. . ..+ ...-...+.|+|+|.+..++.+-+..+.|..+|+... .....+......
T Consensus 137 y~td~~~~~~I~r~~~dG-~~-~---~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~ 210 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDG-SS-R---FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPH 210 (318)
T ss_dssp EEEECSSSCEEEEEETTS-CS-C---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSC
T ss_pred EEEecCCCCEEEEEEcCC-CC-e---EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCC
Confidence 4444 256788887753 21 1 112 1223456899999977757788788899999998754 222222223344
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...|++. +..+.|.... .+.|..++..+|.
T Consensus 211 P~glav~--~~~lywtd~~---~~~V~~~~~~~G~ 240 (318)
T 3sov_A 211 PFALTLF--EDILYWTDWS---THSILACNKYTGE 240 (318)
T ss_dssp EEEEEEE--TTEEEEEETT---TTEEEEEETTTCC
T ss_pred ceEEEEe--CCEEEEEecC---CCeEEEEECCCCC
Confidence 5667764 4456665432 4567777765554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.35 Score=42.63 Aligned_cols=164 Identities=8% Similarity=0.015 Sum_probs=93.5
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
....++.......++|.+++ .++++-...+.|+.||... .....+. -.....+|++
T Consensus 24 ~~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g----------------------~~~~~~~-~~~~p~gia~ 79 (306)
T 2p4o_A 24 IITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG----------------------NQQIHAT-VEGKVSGLAF 79 (306)
T ss_dssp EEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC----------------------CEEEEEE-CSSEEEEEEE
T ss_pred EeEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCC----------------------ceEEEEe-CCCCceeEEE
Confidence 33444444678899999988 6887777889999998765 1111121 1235789999
Q ss_pred CCCCCCeEEEEcC-CC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 238 NPITTGRLVTGDC-NS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 238 sp~~~~~l~sgs~-dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
.+++. ++++... ++ .|..++..+ +.... ...+ ........++..+.+. ++++...++.|.++|...+...+..
T Consensus 80 ~~dG~-l~vad~~~~~~~v~~~d~~~-g~~~~-~~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 80 TSNGD-LVATGWNADSIPVVSLVKSD-GTVET-LLTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp CTTSC-EEEEEECTTSCEEEEEECTT-SCEEE-EEEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCc-EEEEeccCCcceEEEEcCCC-CeEEE-EEeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99987 6555433 22 466667655 33221 0111 1122334555555444 6666667889999998753111211
Q ss_pred ee---------cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FK---------AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~---------~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.. ..-...+.| ++++..+.+.... .+.|..++...
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~---~~~I~~~~~~~ 198 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE---KMLLLRIPVDS 198 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT---TTEEEEEEBCT
T ss_pred ECCccccccccCCCCcCCCc--CcCCCEEEEEeCC---CCEEEEEEeCC
Confidence 10 111235666 7778766655432 56677777653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.01 Score=59.44 Aligned_cols=164 Identities=9% Similarity=-0.065 Sum_probs=91.5
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..+..|.|.+.+..++++-...+.|+.+++...... ......+........+|++.+.+..++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-----------------~~~~~~i~~~~~~P~glavD~~~g~LY 468 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIHSNIY 468 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCCCBCCSCC--CCCEECCCSSSBCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-----------------cceEEEEeCCCCCcceEEEEeeCCcEE
Confidence 445677888766456666556678888887641000 011111111111234566665544356
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEeecCCCCEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
++-...+.|.+.++.. .... ..+.........|+++|.+..++++-... +.|..+++... .....+...-...+
T Consensus 469 ~tD~~~~~I~v~d~dg-~~~~---~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKG-VKRK---TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPN 543 (699)
T ss_dssp ECCTTTSCEEEEBSSS-CCEE---EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCC
T ss_pred EEeccCCeEEEEecCC-CceE---EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCcc
Confidence 6656678899999864 2211 11111223457889999766577665443 77888877643 22111222233467
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.|+|+|++..|.|.... .+.|..++..
T Consensus 544 Glavd~~~~~LY~aD~~---~~~I~~~d~d 570 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSK---LHSISSIDVN 570 (699)
T ss_dssp CEEECTTTCCEEEEETT---TTEEEEECSS
T ss_pred EEEEeccCCEEEEEecC---CCeEEEEccC
Confidence 89999988777776542 4567777664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.15 Score=45.78 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=98.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC----CC--CceEEEE
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG----HK--DEGYAID 236 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~ 236 (359)
....--.+++|.+....++++.-..|+|..|+..... ...+ .+.+ .. ....+|.
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-------------------~~~~-~~~~~s~~g~~~~~~sGl~ 69 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-------------------HFNV-VIDGASSNGDGEQQMSGLS 69 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-------------------EEEE-CCTTTCCSSCCSEEEEEEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-------------------EEEE-ecCCccccCCCcceeeEEE
Confidence 3344456789988664666766689999999986410 0001 1211 01 1347899
Q ss_pred e---CCCCCCeEEEEc-------------CCCcEEEEecC---CCCc-ceecCcccc-------CCC-CCeEEEEecCCC
Q 018235 237 W---NPITTGRLVTGD-------------CNSCIYLWEPA---SDAT-WNVDPNPFI-------GHS-ASVEDLQWSPTE 288 (359)
Q Consensus 237 ~---sp~~~~~l~sgs-------------~dg~I~lwd~~---~~~~-~~~~~~~~~-------~h~-~~V~~v~~sp~~ 288 (359)
| .|.+. ++++.. .+..|..+|+. ++.. +...+.... +.. ...++++..++|
T Consensus 70 ~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G 148 (334)
T 2p9w_A 70 LLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG 148 (334)
T ss_dssp ESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS
T ss_pred EeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC
Confidence 9 57755 555433 25779999988 4222 221111111 112 358999999999
Q ss_pred CCEEEEEeCC-CcEEEEECCCCCCceEEee------cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 289 PDVFASCSVD-GHIAIWDTRVGKSALTSFK------AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 289 ~~~las~s~D-g~I~iwD~r~~~~~~~~~~------~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
. ..++++.- +.|...+.... .+..+. ......+.|.++|++..|+.... .+.|..+|..
T Consensus 149 n-aYVt~s~~~~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~----~g~L~~fD~~ 214 (334)
T 2p9w_A 149 N-SYVAFALGMPAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG----PRALTAFDVS 214 (334)
T ss_dssp C-EEEEEEESSCEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS----SSSEEEEECS
T ss_pred C-EEEeCCCCCCeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC----CCeEEEEcCC
Confidence 8 88888887 87777776543 222221 11224679999999988877654 3445555544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.2 Score=45.68 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=93.0
Q ss_pred EEEecC-CCceeeEEEeCCCCcEEEEE------------eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 159 LRKVAH-QGCVNRIRAMTQNPHICASW------------ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 159 ~~~~~H-~~~V~~i~~~p~~~~~lat~------------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
++.+.. ....-.|...|+| .+++++ ..+|.|.++|+...... ...+ .+
T Consensus 42 C~~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-----------------~~~l-~~ 102 (355)
T 3sre_A 42 CNLVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-----------------VSEL-EI 102 (355)
T ss_dssp EEECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCC-----------------EEEC-EE
T ss_pred CEEeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-----------------eEEE-Ec
Confidence 344433 2345566778877 444444 16899999998752110 0111 12
Q ss_pred cC-----CCCceEEEEeCC--CCCCeEEEEc-C--CCcEEEEecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEE
Q 018235 226 GG-----HKDEGYAIDWNP--ITTGRLVTGD-C--NSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 226 ~~-----h~~~v~~l~~sp--~~~~~l~sgs-~--dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las 294 (359)
.+ ..-.-++|++.+ ++..+|+.+. . +.+|.+|++...+........+.+.. ...+++.+.++|. ++++
T Consensus 103 ~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt 181 (355)
T 3sre_A 103 IGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYAT 181 (355)
T ss_dssp ECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEE
T ss_pred cCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEec
Confidence 22 122456777655 3443455542 2 46788888765433222223444322 4689999999998 6666
Q ss_pred Ee-----------------CCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 295 CS-----------------VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 295 ~s-----------------~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.. ..|.|.-+|. + . +..+...-...|.|+|+|+++.+.+.... .+.|..|+..
T Consensus 182 ~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~-~-~~~~~~~l~~pNGia~spDg~~lYvadt~---~~~I~~~~~~ 251 (355)
T 3sre_A 182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N-D-VRVVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKH 251 (355)
T ss_dssp ESCSCSSHHHHHHHHHTTCCCEEEEEECT--T-C-CEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEEC
T ss_pred CCcEeCCcccccchhhccCCccEEEEEEC--C-e-EEEeecCCcccCcceECCCCCEEEEEeCC---CCeEEEEEEC
Confidence 54 1244444544 2 2 22232223457999999999887766542 4556666653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.29 Score=49.61 Aligned_cols=160 Identities=13% Similarity=-0.023 Sum_probs=95.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
......|++.+.+.+++++-...+.|.+.++... .....+........+|++.|... +
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---------------------~~~~l~~~~l~~P~gIaVDp~~g-~ 527 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------------------KRKTLFRENGSKPRAIVVDPVHG-F 527 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------------------SEEEEEECTTCCEEEEEEETTTT-E
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---------------------eEEEEEeCCCCCcceEEEecCCC-C
Confidence 3556778888877678888788889999988751 11122222334577899988765 4
Q ss_pred EEEEc-C-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC--C
Q 018235 245 LVTGD-C-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH--N 320 (359)
Q Consensus 245 l~sgs-~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h--~ 320 (359)
|+..+ . .+.|...++.. .... ..+...-...+.|++++.+..++++-...+.|..+++... .....+... -
T Consensus 528 LYwtD~g~~~~I~~~~~dG-~~~~---~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~-~~~~v~~~~~~l 602 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNG-VDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRL 602 (791)
T ss_dssp EEEEECSSSCEEEEEETTS-CCEE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTT
T ss_pred EEEecCCCCCeEEEEecCC-CceE---EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC-ceEEEecCCCcc
Confidence 44443 2 26788888753 2211 1122233568899999877757777777888999998764 322222221 1
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.....|++. +..|.|.... .+.|...+..+|
T Consensus 603 ~~P~glav~--~~~lYwtD~~---~~~I~~~dk~tG 633 (791)
T 3m0c_C 603 AHPFSLAVF--EDKVFWTDII---NEAIFSANRLTG 633 (791)
T ss_dssp SSEEEEEEE--TTEEEEEETT---TTEEEEEETTTC
T ss_pred CCCCEEEEe--CCEEEEEECC---CCEEEEEeCCCC
Confidence 234455553 4456665432 344555554444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.39 E-value=0.45 Score=43.93 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=94.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
......+++.+.+.+++++-...+.|.+.++.. ......+........+|+..|.+. .
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g---------------------~~~~~l~~~~~~~P~~iavdp~~g-~ 215 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG---------------------VKRKTLFRENGSKPRAIVVDPVHG-F 215 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTT---------------------CSEEEEEECSSCCEEEEEEETTTT-E
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCC---------------------CceEEEEeCCCCCcceEEEecccC-e
Confidence 345678888875547777777788888888765 122222222333567899998765 4
Q ss_pred EEEEc-C-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec--CC
Q 018235 245 LVTGD-C-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA--HN 320 (359)
Q Consensus 245 l~sgs-~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~--h~ 320 (359)
|+..+ . .+.|...++.. .... ......-...+.|+++|.+..++.+-+..+.|..+|+... .....+.. .-
T Consensus 216 ly~td~~~~~~I~~~~~dG-~~~~---~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l 290 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNG-VDIY---SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRL 290 (400)
T ss_dssp EEEEECSSSCCEEEEETTS-CSCE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTT
T ss_pred EEEEeCCCCCEEEEEeCCC-CccE---EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCC
Confidence 44443 2 36788888753 2211 1112223567899999887757777777889999998764 22222221 22
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.....|+. ++..+.|.... .+.|..++..+|
T Consensus 291 ~~P~gl~v--~~~~lywtd~~---~~~V~~~~~~~G 321 (400)
T 3p5b_L 291 AHPFSLAV--FEDKVFWTDII---NEAIFSANRLTG 321 (400)
T ss_dssp SSEEEEEE--ETTEEEEEESS---SCSEEEEESSSC
T ss_pred CCCEEEEE--eCCEEEEecCC---CCeEEEEEcCCC
Confidence 33456665 34455665432 344555554444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.11 Score=46.29 Aligned_cols=110 Identities=15% Similarity=-0.018 Sum_probs=65.3
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCC--CcceecCccccCCCCCeEEEEecCCCCCEEEEEeC----------CC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV----------DG 299 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~----------Dg 299 (359)
..+|+|+|++..++++-...+.|.+|++... +.. ..+..... ...+++.+++. ++++... .+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~----~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~ 260 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA----EVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDP 260 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE----EEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc----ceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCcc
Confidence 4579999998723444456689999998642 111 11111123 77899999997 7776654 46
Q ss_pred cEEEEECCCCCCceEEeecC----CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 300 HIAIWDTRVGKSALTSFKAH----NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h----~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.|..+|.. + +.+..+... -..+.++++. ++.+++.+.. .+.|..++..
T Consensus 261 ~v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~----~~~i~~~~~~ 312 (322)
T 2fp8_A 261 KGIKFDEF-G-NILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLF----HGSVGILVYD 312 (322)
T ss_dssp EEEEECTT-S-CEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSS----CSEEEEEEC-
T ss_pred EEEEECCC-C-CEEEEEECCCCCccccceEEEEe-CCEEEEeecC----CCceEEEecc
Confidence 68888864 3 455555322 2346666663 5555544433 4567777654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=1.1 Score=44.17 Aligned_cols=159 Identities=11% Similarity=-0.004 Sum_probs=99.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-C-CCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-G-HKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~sp~~~ 242 (359)
-..+..|.|.+.+..++.+-..++.|+.+++.. ......+. + ....+.+++| .+.
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g---------------------~~~~~v~~~g~~~P~GlAvD~--~~~ 92 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNG---------------------SALEHVVEFGLDYPEGMAVDW--LGK 92 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------------------CSCEEEECSSCSCCCEEEEET--TTT
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCC---------------------CCcEEEEeCCCCCcceEEEEe--CCC
Confidence 346778999997767888877889999988865 11112222 1 2234445554 444
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE-eCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC-SVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~-s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.++++-...+.|.+.++....... .+...-....+|+++|....++.+- +..+.|...++... . ...+...-.
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~----l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~-~~~l~~~~~ 166 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQV----LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-E-RTTLVPNVG 166 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEE----EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-S-CEEEECSCS
T ss_pred EEEEEECCCCEEEEEecCCCcEEE----EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-c-eEEEECCCC
Confidence 255666667889999885422111 1113335678999999655466665 33677888887754 2 223323445
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+.|++.+.+..|.|.... .+.|...+...
T Consensus 167 ~P~GlalD~~~~~LY~aD~~---~~~I~~~d~dG 197 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDLD---TNLIESSNMLG 197 (628)
T ss_dssp SEEEEEEETTTTEEEEEETT---TTEEEEEETTS
T ss_pred CcceEEEccccCEEEEEECC---CCEEEEEcCCC
Confidence 68899999988888887653 45666666543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.46 Score=44.14 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=70.6
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee--------cCccccC------CCCCeEEEEecCCCCC--EEEE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--------DPNPFIG------HSASVEDLQWSPTEPD--VFAS 294 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~--------~~~~~~~------h~~~V~~v~~sp~~~~--~las 294 (359)
.+..+..||.|. +||..+ +..|+|-.+..+..... ..+.+.- ....|..+.|||-+.+ .|++
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 678899999998 777775 66888888763211100 0011111 3578999999997643 8999
Q ss_pred EeCCCcEEEEECCCC-CCceEEe---------ecCCCCEEEEEEcCCCCeEEE
Q 018235 295 CSVDGHIAIWDTRVG-KSALTSF---------KAHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~-~~~~~~~---------~~h~~~V~~i~~s~~~~~l~~ 337 (359)
-..|+.||+||+... ..|. .+ ......|.+++|..++-.|..
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 999999999999863 2233 22 223367899999996654444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.11 Score=47.11 Aligned_cols=66 Identities=9% Similarity=0.083 Sum_probs=40.7
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
.++.++.++.|..+|..++ +.. ..+............. +. .++.++.++.|..+|.+++ +.+..+.
T Consensus 105 ~v~v~~~~g~l~a~d~~tG-~~~---W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG-~~~W~~~ 170 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDG-TVA---WQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADG-AVKWTVN 170 (376)
T ss_dssp EEEEEETTSEEEEEETTTC-CEE---EEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCC-CEE---EEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCC-cEEEEEe
Confidence 7888888999999999874 322 1111111111111111 33 6777888999999999988 5555553
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.31 Score=45.65 Aligned_cols=158 Identities=9% Similarity=0.076 Sum_probs=93.3
Q ss_pred CceeeEEEeC-CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC-cEEe-cCCCCceEEEEeCCCCC
Q 018235 166 GCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKF-GGHKDEGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~h~~~v~~l~~sp~~~ 242 (359)
...+.+++.| .+ .++++-..++.|+.++... ... ...+ .+.....+.|+|+|++.
T Consensus 228 ~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~---------------------g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 228 RGAKTCAVHPQNG-KIYYTRYHHAMISSYDPAT---------------------GTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp SSBCCCEECTTTC-CEEECBTTCSEEEEECTTT---------------------CCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred CCCCEEEEeCCCC-eEEEEECCCCEEEEEECCC---------------------CeEEEEEeccCCCCCcccEEEeCCCC
Confidence 3456678888 55 6777766778888888763 111 0111 11122345799999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccC---------------CCCCeEEEEe---------cCCCCCEEEEEeCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---------------HSASVEDLQW---------SPTEPDVFASCSVD 298 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---------------h~~~V~~v~~---------sp~~~~~las~s~D 298 (359)
.++++-...+.|+.+++............+.+ .-.....+++ .+.+. ++++-...
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n 364 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDS 364 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCC
Confidence 34455556778999886531111100011111 1123567898 66666 88888888
Q ss_pred CcEEEEECCCCCCceEEeecC------------------CCCEEEEEEc-CCCCeEEEEeeecccceEEEEEeC
Q 018235 299 GHIAIWDTRVGKSALTSFKAH------------------NADVNVISWN-RCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h------------------~~~V~~i~~s-~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.|+.++. .+ .+.++.+. -.....|+++ +++.+++.+.. ++.|+.++.
T Consensus 365 ~~I~~~~~-~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~----n~rIr~i~~ 431 (433)
T 4hw6_A 365 HTVRVLTP-EG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD----NHRVRKIAP 431 (433)
T ss_dssp TEEEEECT-TS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG----GTEEEEEEE
T ss_pred CEEEEECC-CC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC----CCEEEEEec
Confidence 99999985 32 34443221 1136789999 67777776655 566777654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.74 Score=41.52 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=58.5
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec-CCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-HNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-h~~ 321 (359)
+.++.++.++.|..+|..+ ++.. .... ......+... +. .+..++.++.|..+|..++ +.+..... ...
T Consensus 240 ~~v~~~~~~g~l~~~d~~t-G~~~---w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~ 309 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRS-GQIM---WKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGG-VTLWTQSDLLHR 309 (376)
T ss_dssp TEEEEECTTSCEEEEETTT-CCEE---EEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTC-CEEEEECTTTTS
T ss_pred CEEEEEecCcEEEEEECCC-CcEE---eecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCC-cEEEeecccCCC
Confidence 3788888899999999987 4322 1111 1233444433 44 6777788999999999988 55555431 111
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+...... +..|+.... ++.|.++|..+|++
T Consensus 310 ~~~~~~~~--~~~l~v~~~----~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 310 LLTSPVLY--NGNLVVGDS----EGYLHWINVEDGRF 340 (376)
T ss_dssp CCCCCEEE--TTEEEEECT----TSEEEEEETTTCCE
T ss_pred cccCCEEE--CCEEEEEeC----CCeEEEEECCCCcE
Confidence 12222222 334444433 56677888777764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.49 Score=41.62 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=85.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeC-CC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWAD-TG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~-dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..+..+.+++.+++ +++++... ++ .|..++..... ...+..+. ......+++..+.+
T Consensus 70 ~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~-------------------~~~~~~~~-~~~~~~g~~~~~~~ 128 (306)
T 2p4o_A 70 VEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGT-------------------VETLLTLP-DAIFLNGITPLSDT 128 (306)
T ss_dssp CSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSC-------------------EEEEEECT-TCSCEEEEEESSSS
T ss_pred CCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCe-------------------EEEEEeCC-CccccCcccccCCC
Confidence 34678999999998 45555433 22 46666654410 00111111 11122344444443
Q ss_pred CCeEEEEcCCCcEEEEecCCCC-cceecCc-----cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC-CC-Cce
Q 018235 242 TGRLVTGDCNSCIYLWEPASDA-TWNVDPN-----PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GK-SAL 313 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~-----~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~-~~~ 313 (359)
. .+++-...+.|+++|..... ....... .....-...+.| +|++..++++-+..+.|..+|+.. +. ...
T Consensus 129 ~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~ 205 (306)
T 2p4o_A 129 Q-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 205 (306)
T ss_dssp E-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred c-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence 3 45555468889888875421 1110000 011122345566 788876778888889999999875 21 111
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+.. ......|++.++|.+++.... .+.|.+++..
T Consensus 206 ~~~~~-~~~P~gi~vd~dG~l~va~~~----~~~V~~~~~~ 241 (306)
T 2p4o_A 206 EIFVE-QTNIDDFAFDVEGNLYGATHI----YNSVVRIAPD 241 (306)
T ss_dssp EEEEE-SCCCSSEEEBTTCCEEEECBT----TCCEEEECTT
T ss_pred EEEec-cCCCCCeEECCCCCEEEEeCC----CCeEEEECCC
Confidence 12211 123456788888876554432 4456667654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.24 Score=46.38 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=88.1
Q ss_pred eeeEEEeCC--CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 168 VNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 168 V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
-..|++.|+ +..++++-.. +.|+.++... ..+..+........+|+|++++. ++
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~----------------------g~v~~~~~~~~~P~giavd~dG~-ly 196 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVN----------------------QYVDIKTTNIGQCADVNFTLNGD-MV 196 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTT----------------------TEEEEECCCCSCEEEEEECTTCC-EE
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCC----------------------CEEEEeecCCCCccEEEECCCCC-EE
Confidence 457788884 2255555333 7888888754 22334444445678999999998 66
Q ss_pred EEEcCC---C-cEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeCCCcEEEEECCCCCCceEEe-e-c
Q 018235 246 VTGDCN---S-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSF-K-A 318 (359)
Q Consensus 246 ~sgs~d---g-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~-~ 318 (359)
++.... . .+...+... .+.. ...+. .-.....++++| .+. ++++-..++.|+.+|..++ .....+ . .
T Consensus 197 Vad~~~~~~~~gv~~~~~~~--~~~~-~~~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g-~~~~~~~~~~ 270 (433)
T 4hw6_A 197 VVDDQSSDTNTGIYLFTRAS--GFTE-RLSLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATG-TLTEEEVMMD 270 (433)
T ss_dssp EEECCSCTTSEEEEEECGGG--TTCC-EEEEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTC-CEEEEEEECS
T ss_pred EEcCCCCcccceEEEEECCC--Ceec-ccccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCC-eEEEEEeccC
Confidence 665422 1 133333221 1110 01111 223456688999 555 8877778889999998865 331222 1 1
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
....-..|+|+|++..|.+.... .+.|..++.
T Consensus 271 ~~~~~~~ia~dpdG~~LYvad~~---~~~I~~~~~ 302 (433)
T 4hw6_A 271 TKGSNFHIVWHPTGDWAYIIYNG---KHCIYRVDY 302 (433)
T ss_dssp CCSSCEEEEECTTSSEEEEEETT---TTEEEEEEB
T ss_pred CCCCcccEEEeCCCCEEEEEeCC---CCEEEEEeC
Confidence 12223569999999855555432 566777653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.013 Score=53.84 Aligned_cols=102 Identities=5% Similarity=-0.182 Sum_probs=66.8
Q ss_pred cEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc-----
Q 018235 179 HICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD----- 249 (359)
Q Consensus 179 ~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs----- 249 (359)
.++++-..++ +|.++|..+ .+.+.++..-..+ .+.++|++. +++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t---------------------~~v~~~i~vG~~P--~i~~spDg~-~lyVan~~~~r 88 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAGHSGS-DFALASTSFAR 88 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEECTTSS-CEEEEEEEETT
T ss_pred eEEEECCccCCccceEEEEECCC---------------------CeEEEEEeCCCCC--ceEECCCCC-EEEEEcccccc
Confidence 3555555455 888999887 4555666443445 799999998 666554
Q ss_pred -----CCCcEEEEecCCCCcceecCccccCC-------CCCeEEEEecCCCCCEEEEEeC-CCcEEE--EECCC
Q 018235 250 -----CNSCIYLWEPASDATWNVDPNPFIGH-------SASVEDLQWSPTEPDVFASCSV-DGHIAI--WDTRV 308 (359)
Q Consensus 250 -----~dg~I~lwd~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~~las~s~-Dg~I~i--wD~r~ 308 (359)
.++.|.+||+.+ .+.. ..+... ......++++|+++.++++... ...|.+ +|+.+
T Consensus 89 ~~~G~~~~~VsviD~~T-~~vv---~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVT-FLPI---ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TTSSSEEEEEEEECTTT-CCEE---EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccCCCCCEEEEEECCC-CCEE---EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 468899999987 4433 222211 1234568999999955555433 467888 88854
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.079 Score=52.94 Aligned_cols=72 Identities=11% Similarity=0.174 Sum_probs=45.3
Q ss_pred EEEecCCCCCEEEEEeCCCc-------------------EEEEECCCCCCceEEeec--CC-------CCEEEEEEcCCC
Q 018235 281 DLQWSPTEPDVFASCSVDGH-------------------IAIWDTRVGKSALTSFKA--HN-------ADVNVISWNRCW 332 (359)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~-------------------I~iwD~r~~~~~~~~~~~--h~-------~~V~~i~~s~~~ 332 (359)
.++++|... +++.++.++. |..||.+++ +.+..+.. |. ..+.......+|
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 577888877 7888877763 999999998 66666643 21 112112222234
Q ss_pred C---eEEEEeeecccceEEEEEeCcCCcc
Q 018235 333 L---AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 333 ~---~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. .++... .++.+.++|..+|++
T Consensus 317 ~~~~~v~~~~----~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 317 KPRKVLMQAP----KNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEEEEEECC----TTSEEEEEETTTCCE
T ss_pred cEEEEEEEEC----CCCeEEEEECCCCCE
Confidence 3 333333 378889999888874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.73 Score=39.74 Aligned_cols=167 Identities=7% Similarity=-0.018 Sum_probs=97.2
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+..-.|++.+.+ .++++.-.++.+.++++....... ..... ..++. .........+|+|+|.+. .|
T Consensus 70 ~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~-~~~~~----------~~~~~-~~~~N~g~EGLA~d~~~~-~L 135 (255)
T 3qqz_A 70 KDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVK-ILKKI----------KIPLQ-ESPTNCGFEGLAYSRQDH-TF 135 (255)
T ss_dssp SSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEE-EEEEE----------ECCCS-SCCCSSCCEEEEEETTTT-EE
T ss_pred CChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeee-eeeee----------ccccc-cccccCCcceEEEeCCCC-EE
Confidence 577788888877 566665567889999887632100 00000 00000 011234568999999986 55
Q ss_pred EEEcCCCcEEEEecCC--CC-ccee-cCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 246 VTGDCNSCIYLWEPAS--DA-TWNV-DPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~--~~-~~~~-~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
+++.......||.++. .. ...+ ....+ ..+...+.+++++|...++++.....+.|.++|... +.+..+.-.
T Consensus 136 ~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~ 213 (255)
T 3qqz_A 136 WFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLT 213 (255)
T ss_dssp EEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECS
T ss_pred EEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcC
Confidence 5555444445555431 01 1110 00001 113346789999998887888888889999999775 344433211
Q ss_pred C---------CCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 320 N---------ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~---------~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
. ..--.|+|.++|.+.+.+ . .+.+..+..
T Consensus 214 ~g~~~l~~~~~qpEGia~d~~G~lyIvs-E----~n~~y~f~~ 251 (255)
T 3qqz_A 214 KGSRGLSHNIKQAEGVAMDASGNIYIVS-E----PNRFYRFTP 251 (255)
T ss_dssp TTGGGCSSCCCSEEEEEECTTCCEEEEE-T----TTEEEEEEC
T ss_pred CccCCcccccCCCCeeEECCCCCEEEEc-C----CceEEEEEe
Confidence 1 246789999999866653 3 556665544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=1.1 Score=43.92 Aligned_cols=164 Identities=7% Similarity=-0.113 Sum_probs=98.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
..-+....+.|.+.+..++.+=...+.|+.+++... ......+..-.....+|++.+.+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~--------------------~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCEEEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC--------------------CceEEEEeCCCCCcCeEEEEecCC
Confidence 344567789999877577777666788888888651 111222332223456677766555
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.++++-...+.|.+.++.. .... ..+...-....+|++.|.+..++.|-. ..+.|...++... .....+...-.
T Consensus 97 ~ly~~d~~~~~I~v~~~dG-~~~~---~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~ 171 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDG-SLRK---VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIY 171 (619)
T ss_dssp EEEEEETTTTEEEEEETTS-CSCE---EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCS
T ss_pred EEEEEeCCCCEEEEEECCC-CCEE---EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCC
Confidence 3666666778999999864 2211 111123345678999997664777653 3466777776643 22222223345
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+.|++.+.+..|.|.... ...|...+..
T Consensus 172 ~P~Glald~~~~~LY~aD~~---~~~I~~~~~d 201 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAK---LNFIHKSNLD 201 (619)
T ss_dssp SEEEEEEETTTTEEEEEETT---TCCEEEESSS
T ss_pred CCcEEEEEccCCEEEEEeCC---CCeEEEecCC
Confidence 67999999988888877542 4456666554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=1.2 Score=45.04 Aligned_cols=162 Identities=12% Similarity=0.042 Sum_probs=94.9
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..|.++...+++ .+. .|+.++-|..|+..... +.... ..+. .-.-....|.++...+++ .|
T Consensus 310 ~~i~~i~~D~~g-~lW-igt~~~Gl~~~~~~~~~--~~~~~------------~~~~-~~~l~~~~V~~i~~d~~g--~l 370 (795)
T 4a2l_A 310 RSVRSIFMDSQG-GMW-LGTYFGGLNYYHPIRNR--FKNIR------------NIPY-KNSLSDNVVSCIVEDKDK--NL 370 (795)
T ss_dssp SCEEEEEECTTS-CEE-EEESSSCEEEECGGGGS--SEEEC------------CCTT-SSSCSCSSEEEEEECTTS--CE
T ss_pred CcEEEEEEeCCc-CEE-EEECCCCeEEeCCCccc--ceEEc------------CCCC-CCCCCCCeeEEEEECCCC--CE
Confidence 457888887777 333 34566778888765410 00000 0000 000123468899887776 46
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccc-----cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee---
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPF-----IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--- 317 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--- 317 (359)
..|+.++-|..|+..+ +....-.... .-....|.++...+++. +|..|+.++-|.+||..++ . ...+.
T Consensus 371 WiGt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~-~-~~~~~~~~ 446 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSG-Q-VENFNQRN 446 (795)
T ss_dssp EEEESSSCEEEECTTT-CCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTC-C-EEEECTTT
T ss_pred EEEECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCC-c-EEEeecCC
Confidence 6687787899999865 3322100000 01235789999888876 5777888788999998875 2 33332
Q ss_pred --cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 318 --AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 318 --~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.....|.+|...+++.+.+.+. .+ |.+|+..++
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt~-----~G-l~~~~~~~~ 481 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGTL-----SA-LVRFNPEQR 481 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEES-----SC-EEEEETTTT
T ss_pred CCcCCCeeEEEEECCCCCEEEEec-----Cc-eeEEeCCCC
Confidence 2345789999888887655442 12 455655543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.029 Score=56.18 Aligned_cols=157 Identities=12% Similarity=-0.038 Sum_probs=84.3
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~ 246 (359)
...|++.+.+.+++++-...+.|.++++.. ..+.++ ........+|++.|.+..+++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg----------------------~~~~~l~~~~~~~P~giavDp~~g~ly~ 512 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG----------------------VKRKTLFREQGSKPRAIVVDPVHGFMYW 512 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSS----------------------CCEEEECCCSSCCCCCEECCSSSSCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCC----------------------CceEEEEeCCCCCcceEEEccCCCcEEE
Confidence 345666644435666655667788887765 111222 111223467888887652444
Q ss_pred EEcCC-CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCCCCE
Q 018235 247 TGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADV 323 (359)
Q Consensus 247 sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V 323 (359)
+-... +.|.+.++....... .....-...+.|+|+|.+..++++-+..+.|..+|+... .....+. ..-...
T Consensus 513 td~~~~~~I~~~~~dG~~~~~----l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P 587 (699)
T 1n7d_A 513 TDWGTPAKIKKGGLNGVDIYS----LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP 587 (699)
T ss_dssp CCCSSSCCEEBCCSSSCCCCE----ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSC
T ss_pred cccCCCCeEEEEeCCCCCeeE----EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCc
Confidence 43222 678777764321111 111122345789999987768888888899999998753 2221121 111122
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..|++. +..|+|.... .+.|..++..+|
T Consensus 588 ~glavd--~~~lywtd~~---~~~V~~~d~~~G 615 (699)
T 1n7d_A 588 FSLAVF--EDKVFWTDII---NEAIFSANRLTG 615 (699)
T ss_dssp CCCEEE--TTEEEEECST---TTCEEEEETTTE
T ss_pred eEeEEE--CCEEEEEeCC---CCeEEEEEccCC
Confidence 334443 3356665432 345666655443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.15 Score=50.59 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=37.5
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.|..||++++ +.+.++..+ ..++...+...+.+++.+.. ++.|+.||..+|++
T Consensus 437 ~g~l~A~D~~tG-~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~----dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 437 SGALLAWDPVKQ-KAAWKVPYP-THWNGGTLSTAGNLVFQGTA----AGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEEEETTTT-EEEEEEEES-SSCCCCEEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred cceEEEEeCCCC-cEEEEccCC-CCCcCceeEeCCCEEEEECC----cccchhhhhhcChh
Confidence 478999999998 666665433 23333344556667766644 78899999988874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.77 Score=43.70 Aligned_cols=171 Identities=9% Similarity=0.011 Sum_probs=94.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECC-------CCcc-ccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLR-------SHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.++++|.+..++++-..++.|+.+|+. .... ....... . . ....+... +....-+.|+|+|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~--~---g---~~~~l~~~-~~~~~p~~ia~~p 319 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN--P---N---TFKQLFTI-ADPSWEFQIFIHP 319 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC--T---T---TEEEEEEC-SSSSCCEEEEECT
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc--c---c---ccceeEec-CCCCCceEEEEcC
Confidence 35778899665888888888999999986 2100 0000000 0 0 00011222 2233457999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccC------C---------CCCeE-EEEec-------CCCCCEEEEEe
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG------H---------SASVE-DLQWS-------PTEPDVFASCS 296 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~------h---------~~~V~-~v~~s-------p~~~~~las~s 296 (359)
++..++++=....+|+.++.......+.....+.+ . -.... .+... +.+. ++++-.
T Consensus 320 ~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~ 398 (496)
T 3kya_A 320 TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDR 398 (496)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEG
T ss_pred CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEEC
Confidence 99733455456778888665431111100011111 1 01233 34444 3455 888888
Q ss_pred CCCcEEEEECCCCCCceEEeecCC------------------------CCEEEEEEcCC-CCeEEEEeeecccceEEEEE
Q 018235 297 VDGHIAIWDTRVGKSALTSFKAHN------------------------ADVNVISWNRC-WLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~h~------------------------~~V~~i~~s~~-~~~l~~~~~~~~~d~~i~iw 351 (359)
.+++||.++. .+ .+.++.+.. .....|++.++ +.+++.+.. ++.|+.+
T Consensus 399 ~N~rIr~i~~-~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~----N~rIrki 471 (496)
T 3kya_A 399 LNFCVRKVTP-EG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV----GHTIRTI 471 (496)
T ss_dssp GGTEEEEECT-TC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT----TTEEEEE
T ss_pred CCCEEEEEeC-CC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC----CCEEEEE
Confidence 8999999983 33 344553220 12568999996 777777765 6778877
Q ss_pred eCcC
Q 018235 352 DCSR 355 (359)
Q Consensus 352 d~~~ 355 (359)
+...
T Consensus 472 ~~~~ 475 (496)
T 3kya_A 472 SMEQ 475 (496)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.04 E-value=1.8 Score=38.53 Aligned_cols=157 Identities=11% Similarity=0.095 Sum_probs=83.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEE-EECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQV-WDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.++.+.+..+.+.+.+ .+++.+. .|.++. +|-... ...++ -......++.+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~-------------------tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQT-------------------AWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp CSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCS-------------------SCEEE--ECCSSSCEEEEEECTT
T ss_pred cCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCC-------------------ceeEC--CCCCCCccceeEECCC
Confidence 3556678888888876 5666544 454443 332110 11221 1233456788999888
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee---
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--- 317 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--- 317 (359)
+. ++ .++.+|.++++....+..|.....+-..+...+.++.+.|.+. +++++. +|.| ++....+ ..-..+.
T Consensus 216 g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~ 289 (327)
T 2xbg_A 216 GR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGG-QTWQQDVDVK 289 (327)
T ss_dssp SC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTT-SSCEECGGGT
T ss_pred CC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCC-cccEEcCccC
Confidence 75 44 4445788877743222334310011011234689999998766 666554 6766 3434433 2222232
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.+...+++|.|.+++.+++.+. ++.|..++
T Consensus 290 ~~~~~~~~v~~~~~~~~~~~G~-----~G~i~~~~ 319 (327)
T 2xbg_A 290 KVPSNFYKILFFSPDQGFILGQ-----KGILLRYV 319 (327)
T ss_dssp TSSSCCCEEEEEETTEEEEECS-----TTEEEEEC
T ss_pred CCCCCeEEEEEECCCceEEEcC-----CceEEEEc
Confidence 2345688899976665544442 44454444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=2.5 Score=42.57 Aligned_cols=142 Identities=6% Similarity=0.012 Sum_probs=87.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec---------CCCCceEEEE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---------GHKDEGYAID 236 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~ 236 (359)
..|.++...+++ .+.+ |+.++-|..|+.... . ...+. .....|+++.
T Consensus 357 ~~V~~i~~d~~g-~lWi-Gt~~~Gl~~~~~~~~---------------------~-~~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 357 NVVSCIVEDKDK-NLWI-GTNDGGLNLYNPITQ---------------------R-FTSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp SSEEEEEECTTS-CEEE-EESSSCEEEECTTTC---------------------C-EEEECCC------CCSCSCEEEEE
T ss_pred CeeEEEEECCCC-CEEE-EECCCCeEEEcCCCC---------------------c-EEEEecCCCCcccCCCCccEEEEE
Confidence 457888887777 4433 566667888887651 1 11111 1234688888
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCc-cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
..+.+. .|..|+.++-|.+|+..+ +....-.. .-......|.++...+++. +.+. +. +.|.+||..++ ....
T Consensus 413 ~d~~g~-~lWigt~~~Gl~~~d~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwig-t~-~Gl~~~~~~~~--~~~~ 485 (795)
T 4a2l_A 413 VDEKKS-LVYIGTHAGGLSILHRNS-GQVENFNQRNSQLVNENVYAILPDGEGN-LWLG-TL-SALVRFNPEQR--SFTT 485 (795)
T ss_dssp EETTTT-EEEEEETTTEEEEEETTT-CCEEEECTTTSCCSCSCEEEEEECSSSC-EEEE-ES-SCEEEEETTTT--EEEE
T ss_pred EcCCCC-EEEEEeCcCceeEEeCCC-CcEEEeecCCCCcCCCeeEEEEECCCCC-EEEE-ec-CceeEEeCCCC--eEEE
Confidence 877663 388888777899999876 33221000 0002345799999988887 5444 34 45888998764 2223
Q ss_pred eec-------CCCCEEEEEEcCCCCeEEEE
Q 018235 316 FKA-------HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 316 ~~~-------h~~~V~~i~~s~~~~~l~~~ 338 (359)
+.. ....|.++...++|.+.+.+
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGG 515 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEe
Confidence 321 23568999988888765544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=3.5 Score=40.50 Aligned_cols=115 Identities=8% Similarity=-0.049 Sum_probs=71.4
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRV 308 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~ 308 (359)
...+|++...+..++++-+..+.|.+.++.. .... ..+........+|+++|....++.+-.... .|...++..
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~G--~~~~--~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDG--RSVG--VVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CEEE--EEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECCC--CeEE--EEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 4567777667664667777788999988753 3221 112234467899999995444777755444 466666654
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
. .....+...-...+.|++.+.+..|.|.... .+.|...+.
T Consensus 466 ~-~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~---~~~I~~~~~ 506 (628)
T 4a0p_A 466 T-EREVLFFSGLSKPIALALDSRLGKLFWADSD---LRRIESSDL 506 (628)
T ss_dssp C-SCEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEET
T ss_pred C-CcEEEEeccCCCccEEEEeCCCCEEEEEeCC---CCEEEEEeC
Confidence 3 2222223234467999999988888887542 345666654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=3.7 Score=40.25 Aligned_cols=156 Identities=6% Similarity=-0.116 Sum_probs=86.3
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
+..+.|.+.+..++.+-...+.|+.+++.. ......+........+|++.+.+..++++
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g---------------------~~~~~v~~~~~~~p~GlAvD~~~~~lY~t 409 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDG---------------------SGSQFVVTAQIAHPDGIAVDWVARNLYWT 409 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS---------------------CSCEEEECSSCSCCCEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCC---------------------CccEEEEECCCCCcCceEEecccCcEEEE
Confidence 345556654434555544556666666544 11112222222233345554444436666
Q ss_pred EcCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 248 GDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
-+..+.|.+.++... . . ..+ ...-....+|++.|....++.+-.. ...|...++... .....+...-...+.
T Consensus 410 D~~~~~I~v~~~~G~-~-~---~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~l~~P~G 483 (619)
T 3s94_A 410 DTGTDRIEVTRLNGT-M-R---KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS-DRVVLVNTSLGWPNG 483 (619)
T ss_dssp ETTTTEEEEEETTSC-S-C---EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEE
T ss_pred eCCCCcEEEEeCCCC-e-E---EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC-ccEEEEeCCCCCCee
Confidence 666788999988642 2 1 122 2234568899999975436666533 466777776643 222222333456789
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
|++.+.+..|.|.... .+.|...+.
T Consensus 484 lalD~~~~~LY~aD~~---~~~I~~~~~ 508 (619)
T 3s94_A 484 LALDYDEGKIYWGDAK---TDKIEVMNT 508 (619)
T ss_dssp EEEETTTTEEEEEETT---TTEEEEEES
T ss_pred eEEcccCCEEEEEECC---CCEEEEEec
Confidence 9999988888777542 345555554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.63 E-value=2.3 Score=39.51 Aligned_cols=122 Identities=7% Similarity=-0.031 Sum_probs=72.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.......+.|++.+++..++++....+ .+.+++.... ......+.. .....++++
T Consensus 175 ~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~--------------------~~~~~~l~~-~~~p~giav 233 (430)
T 3tc9_A 175 YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG--------------------FKVITELTK-GQNCNGAET 233 (430)
T ss_dssp ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT--------------------SCSEEEEEE-CSSCCCEEE
T ss_pred ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc--------------------eeeeeeecc-CCCceEEEE
Confidence 344556889999999954666655333 2333333220 111122221 223457889
Q ss_pred CC-CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 238 NP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 238 sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
+| .+. ++++-...+.|..+++.. +.... .... +.......|+|+|++..++++-...+.|..++...
T Consensus 234 dp~~g~-lyv~d~~~~~V~~~~~~~-~~~~~-~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 234 HPINGE-LYFNSWNAGQVFRYDFTT-QETTP-LFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CTTTCC-EEEEETTTTEEEEEETTT-TEEEE-EEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCE-EEEEECCCCEEEEEECCC-CcEEE-EEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99 554 666666778999999865 32210 0111 12234678999999986677777888999987653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.36 Score=46.95 Aligned_cols=82 Identities=10% Similarity=-0.036 Sum_probs=45.9
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC-CEEEEEE
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVISW 328 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~~ 328 (359)
.+|.|..||+.+ ++.+ ..+. +...+........+. +++.++.||.|+.||.+++ +.+.++..... .-..+.+
T Consensus 442 ~~g~l~a~D~~t-G~~~---W~~~-~~~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~~ 514 (571)
T 2ad6_A 442 EMGQIRAFDLTT-GKAK---WTKW-EKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTY 514 (571)
T ss_dssp CCEEEEEECTTT-CCEE---EEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEE
T ss_pred CCCeEEEEECCC-CCEE---EEec-CCCCccceeEEECCC-EEEEEcCCCeEEEEECCCC-CEEEEEeCCCCcEeeeEEE
Confidence 357899999887 3322 1111 111111112222344 6666899999999999998 77777643221 1122345
Q ss_pred cCCCCeEEEE
Q 018235 329 NRCWLAVCWH 338 (359)
Q Consensus 329 s~~~~~l~~~ 338 (359)
..++++++..
T Consensus 515 ~~~G~~yv~~ 524 (571)
T 2ad6_A 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 5677655543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.38 Score=46.93 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCc-ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC-EEEEEE
Q 018235 251 NSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD-VNVISW 328 (359)
Q Consensus 251 dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~-V~~i~~ 328 (359)
+|.|..||+.++.. |.. ... ..+..-.....+. +++.++.|+.|+.||.+++ +.+.++...... ..-+.|
T Consensus 465 ~G~l~A~D~~tG~~~W~~---~~~---~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEH---KEH---LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEEE---EES---SCCCSCCEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEE
T ss_pred cceEEEEECCCCCEEEEe---cCC---CCCcccceEeCCC-EEEEECCCCcEEEEECCCC-CEEEEecCCCCcccCceEE
Confidence 67899999987432 221 111 1111111112344 6777999999999999998 777777543221 122567
Q ss_pred cCCCCeEEEE
Q 018235 329 NRCWLAVCWH 338 (359)
Q Consensus 329 s~~~~~l~~~ 338 (359)
..+|+..+..
T Consensus 537 ~~~G~qYv~~ 546 (582)
T 1flg_A 537 EQDGEQYLGV 546 (582)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 6778755443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.00 E-value=3.1 Score=36.90 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=60.8
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEE-EecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYL-WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~l-wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+...++++.+.+.+. +++.+. .|.|.. +|- .+..|.. .-......+..+.+.|++. ++ .++.+|.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~-gG~tW~~---~~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEP-GQTAWEP---HNRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp SCCCCEEEEEECTTSC-EEEEET-TSSEEEEECT-TCSSCEE---EECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred CCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCC-CCCceeE---CCCCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 3445788999999876 666665 555443 442 1234431 1123456788999999886 55 455678887764
Q ss_pred CCCCCCceEEee----cCCCCEEEEEEcCCCCeEEEEe
Q 018235 306 TRVGKSALTSFK----AHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 306 ~r~~~~~~~~~~----~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
...+ ..-..+. .+...+..|.|.+.+.+++.+.
T Consensus 232 ~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 232 PDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp TTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence 2222 1111111 1223588899998777766553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.84 Score=45.05 Aligned_cols=115 Identities=11% Similarity=0.025 Sum_probs=71.1
Q ss_pred eEEEeC-CCCcEEEEEeCCC-----------cEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEE
Q 018235 170 RIRAMT-QNPHICASWADTG-----------HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAID 236 (359)
Q Consensus 170 ~i~~~p-~~~~~lat~s~dg-----------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~ 236 (359)
.+++.+ .+ .+++.|+.+. .+.+||.... ....+..+. .+.....+++
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-------------------~w~~~~~~~~~~~~~~~~~~ 249 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-------------------IVSDRTVTVTKHDMFCPGIS 249 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC-------------------CBCCCEEEECSCCCSSCEEE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC-------------------cEEeCcccCCCCCCcccccc
Confidence 556777 55 7877776542 5778887762 123333332 2333444677
Q ss_pred eCCCCCCeEEEEcC-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CC-----CcEEEEECCCC
Q 018235 237 WNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VD-----GHIAIWDTRVG 309 (359)
Q Consensus 237 ~sp~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~D-----g~I~iwD~r~~ 309 (359)
+..++. +++.|+. +..+.+||+.+ ..|... ..+...... ..++..+++. +++.|+ .+ ..+.+||..+.
T Consensus 250 ~~~~g~-lyv~GG~~~~~v~~yd~~t-~~W~~~-~~~~~~R~~-~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 250 MDGNGQ-IVVTGGNDAKKTSLYDSSS-DSWIPG-PDMQVARGY-QSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp ECTTSC-EEEECSSSTTCEEEEEGGG-TEEEEC-CCCSSCCSS-CEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CCCCCC-EEEeCCCCCCceEEecCcC-CceeEC-CCCCccccc-cceEEecCCe-EEEEeCcccCCcccccceEeCCCCC
Confidence 788887 8888874 45799999987 566531 122211111 2345567887 888888 34 56999999875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.77 E-value=3.7 Score=41.17 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=80.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-----CCCceEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-----HKDEGYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~ 240 (359)
..|.++...+++ .+.+. +. +-|.+|+.... ........ ....+.+|...+.
T Consensus 450 ~~v~~i~~d~~g-~lwig-t~-~Gl~~~~~~~~---------------------~~~~~~~~~~~~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 450 LDVRVFYEDKNK-KIWIG-TH-AGVFVIDLASK---------------------KVIHHYDTSNSQLLENFVRSIAQDSE 505 (781)
T ss_dssp CCEEEEEECTTS-EEEEE-ET-TEEEEEESSSS---------------------SCCEEECTTTSSCSCSCEEEEEECTT
T ss_pred CeEEEEEECCCC-CEEEE-EC-CceEEEeCCCC---------------------eEEecccCcccccccceeEEEEEcCC
Confidence 567777777776 44433 34 45888887651 11111111 1346888888877
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH- 319 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h- 319 (359)
+. |..|+..+-|..|+... ..+..-...-.-....|.++...+++. +.+ ++..|.|..||..+. ....+...
T Consensus 506 g~--lWigt~~~Gl~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi-~T~~Glv~~~d~~~~--~~~~~~~~~ 578 (781)
T 3v9f_A 506 GR--FWIGTFGGGVGIYTPDM-QLVRKFNQYEGFCSNTINQIYRSSKGQ-MWL-ATGEGLVCFPSARNF--DYQVFQRKE 578 (781)
T ss_dssp CC--EEEEESSSCEEEECTTC-CEEEEECTTTTCSCSCEEEEEECTTSC-EEE-EETTEEEEESCTTTC--CCEEECGGG
T ss_pred CC--EEEEEcCCCEEEEeCCC-CeEEEccCCCCCCCCeeEEEEECCCCC-EEE-EECCCceEEECCCCC--cEEEccccC
Confidence 75 55555544577788765 332210000001235789999988887 544 344666588888765 23344211
Q ss_pred ---CCCEEEEEEcCCCCeEEE
Q 018235 320 ---NADVNVISWNRCWLAVCW 337 (359)
Q Consensus 320 ---~~~V~~i~~s~~~~~l~~ 337 (359)
...|.++...++|.+.+.
T Consensus 579 gl~~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 579 GLPNTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp TCSCCCCCEEEECSSSCEEEE
T ss_pred CCCCceEEEEEECCCCCEEEE
Confidence 235778888888775444
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.71 E-value=5.4 Score=39.98 Aligned_cols=155 Identities=12% Similarity=-0.007 Sum_probs=90.7
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec----------CCCCceEEE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG----------GHKDEGYAI 235 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l 235 (359)
..|.++...+++ .+. .|+.++-|..++.... ....+. .....|.++
T Consensus 313 ~~v~~i~~D~~g-~lW-igt~~~Gl~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 313 ASARYIFQDSFN-NIW-IGTWGGGINFISNAPP----------------------TFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp SCEEEEEECSSC-CEE-EEEBSSCEEEECSSCC----------------------SCEEEC----CCCSSCCSSSCEEEE
T ss_pred CeEEEEEEeCCC-CEE-EEecCCeEEEeCCCCC----------------------cceeeccCccccccCCCCCcceEEE
Confidence 467788887777 333 3455566888876541 111110 123468888
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
...+++ .|..|+.++-|.+|+..+ +....-..........|.++...+.+. +.+ |+.++.|..+|.+++ ....
T Consensus 369 ~~d~~g--~lWigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWi-gt~~~Gl~~~~~~~~--~~~~ 441 (781)
T 3v9f_A 369 CDDGQG--KLWIGTDGGGINVFENGK-RVAIYNKENRELLSNSVLCSLKDSEGN-LWF-GTYLGNISYYNTRLK--KFQI 441 (781)
T ss_dssp EECTTS--CEEEEEBSSCEEEEETTE-EEEECC-----CCCSBEEEEEECTTSC-EEE-EETTEEEEEECSSSC--EEEE
T ss_pred EEcCCC--CEEEEeCCCcEEEEECCC-CeEEEccCCCCCCCcceEEEEECCCCC-EEE-EeccCCEEEEcCCCC--cEEE
Confidence 887766 466677666788898764 222100000112346799999888876 444 666677888988764 2333
Q ss_pred ee---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FK---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+. .....|.+|...+++.+.+... .+ |..++..++.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-----~G-l~~~~~~~~~ 480 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIGTH-----AG-VFVIDLASKK 480 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEEET-----TE-EEEEESSSSS
T ss_pred eccCCCCCCeEEEEEECCCCCEEEEEC-----Cc-eEEEeCCCCe
Confidence 32 1345789998888776544332 22 5566665543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=2.7 Score=37.94 Aligned_cols=153 Identities=8% Similarity=0.022 Sum_probs=79.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC---C
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---T 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~ 241 (359)
-..-..++|.|++ .++++ ...|.|++++.... ..+. ..+ .+........+|+++|+ +
T Consensus 28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~~G~-~~~~---------------~~~--v~~~g~~g~~gia~~pdf~~~ 87 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISPSGK-KLVA---------------SFD--VANVGEAGLLGLALHPEFPKK 87 (354)
T ss_dssp CSCEEEEEEEETT-EEEEE-ETTTEEEEECSSCE-EEEE---------------ECC--CCCSTTCSEEEEEECTTTTTS
T ss_pred CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeCCCc-eEee---------------ccc--eeecCCCceeeEEeCCCCCcC
Confidence 3556789999998 66665 45599998863220 0000 000 11112345789999997 4
Q ss_pred CCeEEEEcC----C----CcEEEEecCCCC-cc---eecCcccc-CCCCCeEEEEecCCCCCEEEEEeC-----------
Q 018235 242 TGRLVTGDC----N----SCIYLWEPASDA-TW---NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV----------- 297 (359)
Q Consensus 242 ~~~l~sgs~----d----g~I~lwd~~~~~-~~---~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~----------- 297 (359)
. .|..+.. + ..|..|+..... .. .+....+. +.......|.|.|++. ++++.+.
T Consensus 88 g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~ 165 (354)
T 3a9g_A 88 S-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLS 165 (354)
T ss_dssp C-EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTT
T ss_pred C-EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCC
Confidence 3 4443332 2 567777765421 11 00001111 1112346799999997 7766443
Q ss_pred --CCcEEEEECCCCC-------CceEEeecCCCCEEEEEEcC-CCCeEEEEee
Q 018235 298 --DGHIAIWDTRVGK-------SALTSFKAHNADVNVISWNR-CWLAVCWHLE 340 (359)
Q Consensus 298 --Dg~I~iwD~r~~~-------~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~ 340 (359)
.|.|.-++....- .......+|.. .+.|+|+| .+.+++....
T Consensus 166 ~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 166 SLAGKILRVDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp CCSSEEEEECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECC
T ss_pred CCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecC
Confidence 2445555543210 01111133433 56899999 6776666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=1.4 Score=42.79 Aligned_cols=55 Identities=16% Similarity=-0.032 Sum_probs=33.9
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.|..||+.++ +.+.++... ..+........+..++.+.. ++.|..||..+|++
T Consensus 443 ~g~l~a~D~~tG-~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~----dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 443 MGQIRAFDLTTG-KAKWTKWEK-FAAWGGTLYTKGGLVWYATL----DGYLKALDNKDGKE 497 (571)
T ss_dssp CEEEEEECTTTC-CEEEEEEES-SCCCSBCEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred CCeEEEEECCCC-CEEEEecCC-CCccceeEEECCCEEEEEcC----CCeEEEEECCCCCE
Confidence 578999999987 666665422 22222222323455555443 78899999888875
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.94 Score=44.91 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=44.3
Q ss_pred EEEecCCCCCEEEEEeCCC-------------------cEEEEECCCCCCceEEeec--CC-------CCEEEEEEcCCC
Q 018235 281 DLQWSPTEPDVFASCSVDG-------------------HIAIWDTRVGKSALTSFKA--HN-------ADVNVISWNRCW 332 (359)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg-------------------~I~iwD~r~~~~~~~~~~~--h~-------~~V~~i~~s~~~ 332 (359)
.+++.|... ++..++.++ +|.-+|.+++ +.+..+.. |. .++.......++
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467888776 777777665 4999999998 66666643 22 222222222345
Q ss_pred C---eEEEEeeecccceEEEEEeCcCCcc
Q 018235 333 L---AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 333 ~---~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+ .++.... ++.+.++|..+|++
T Consensus 312 ~~~~~v~~~~~----~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 312 KPRKVLMQAPK----NGFFYVLDRTNGKL 336 (668)
T ss_dssp EEEEEEEECCT----TSEEEEEETTTCCE
T ss_pred cEEEEEEEECC----CCEEEEEECCCCCE
Confidence 4 3333333 77888888888764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=3.2 Score=37.59 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=58.1
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC-CCCCEEEEEeCC-CcEEEEECC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVD-GHIAIWDTR 307 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~D-g~I~iwD~r 307 (359)
..-++|+|||++..++++-+..+.|+.|++...+... ..+.+ ......-.++..+ +|. +.+++.-+ +.|..|+..
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~-~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT-PLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE-EEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTT
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe-cCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECCC
Confidence 3567999999998455555667899999987534322 11233 2235567788888 587 77766533 344444443
Q ss_pred CC-CCceEEeec---CCCCEEEEEEcCCCCeE
Q 018235 308 VG-KSALTSFKA---HNADVNVISWNRCWLAV 335 (359)
Q Consensus 308 ~~-~~~~~~~~~---h~~~V~~i~~s~~~~~l 335 (359)
.. ...+..+.. -...|+++ |..+|+.+
T Consensus 298 ~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l 328 (355)
T 3sre_A 298 NPPGSEVLRIQDILSEEPKVTVV-YAENGTVL 328 (355)
T ss_dssp SCCCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred CCCCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence 21 133444431 22334444 44466543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=3.1 Score=40.63 Aligned_cols=55 Identities=13% Similarity=-0.009 Sum_probs=32.0
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.|.-||++++ +.+.+... ..+++.-.....+.++..+.. ++.|+.+|..+|++
T Consensus 452 ~G~l~A~D~~tG-~~~W~~~~-~~~~~~g~~~tagg~vf~gt~----dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 452 LGQIKAYNAITG-DYKWEKME-RFAVWGGTMATAGDLVFYGTL----DGYLKARDSDTGDL 506 (599)
T ss_dssp CEEEEEECTTTC-CEEEEEEE-SSCCCSBCEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred cCeEEEEECCCC-CEEeEecC-CCCccCcceEecCCEEEEECC----CCeEEEEECCCCCE
Confidence 477888999887 55555531 112211111223445555443 78899999888874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=92.35 E-value=3.7 Score=39.83 Aligned_cols=55 Identities=16% Similarity=0.052 Sum_probs=34.1
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.|.-||++++ +.+.++.... +++.-.....+.+++.+.. ++.|+.||.++|++
T Consensus 465 ~G~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~g~~----dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSG-KVVWEHKEHL-PLWAGVLATAGNLVFTGTG----DGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTC-CEEEEEEESS-CCCSCCEEETTTEEEEECT----TSEEEEEETTTCCE
T ss_pred cceEEEEECCCC-CEEEEecCCC-CCcccceEeCCCEEEEECC----CCcEEEEECCCCCE
Confidence 688999999998 6665554322 2221111223455555543 78899999998874
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.31 E-value=5.8 Score=37.16 Aligned_cols=112 Identities=10% Similarity=0.043 Sum_probs=59.0
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec------CCCCceEEEEeC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDEGYAIDWN 238 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~s 238 (359)
-..-+.++|.|++ .++++-...+.|++++..... ...+..+. .......+|+|+
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~-------------------~~~~~~~~~~~~~~~g~~Gllgia~~ 85 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGS-------------------VKTVFQVPEIVNDADGQNGLLGFAFH 85 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------------------EEEEEECTTCCCCTTSSCSEEEEEEC
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCc-------------------EeEEecCCccccccCCCCceeEEEEC
Confidence 3456799999999 677765444578888754210 01111111 123467799999
Q ss_pred CC---CCCeEEEEcC------------CCcEEEEecCCCC-cc---eecCcccc-CCCCCeEEEEecCCCCCEEEEEeC
Q 018235 239 PI---TTGRLVTGDC------------NSCIYLWEPASDA-TW---NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 239 p~---~~~~l~sgs~------------dg~I~lwd~~~~~-~~---~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
|+ +..+.++-+. ...|.-|+..... .. .+....+. ........|.|.|++. ++++.+.
T Consensus 86 Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd 163 (454)
T 1cru_A 86 PDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD 163 (454)
T ss_dssp TTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred CCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence 95 4313343321 2345555553211 11 00001111 1123578999999998 6666543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=7.3 Score=36.35 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC----CceEEEEeCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK----DEGYAIDWNPI 240 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~ 240 (359)
...|.--+|-... .++-.+ +..|+-|++.. ...|+..|..|. ..|....-+++
T Consensus 105 ~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~--------------------~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 105 TDDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp SSCCCEEEEEETT--EEEEEC-SSEEEEEESSS--------------------SCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCCceEEEecCCC--eEEEEc-CCeeEEecccC--------------------CCCchhheecchhcccceEEEEEECCC
Confidence 4566666775544 444433 46799999876 357777777664 35667777888
Q ss_pred CCCeEEEEc------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC--CCCEEEEEeCC---CcEEEEECCCC
Q 018235 241 TTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVD---GHIAIWDTRVG 309 (359)
Q Consensus 241 ~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~D---g~I~iwD~r~~ 309 (359)
..-++++|- -.|.+.||.....- .+.+.||.+.-..+...-+ ...+|+.+... +.++|.++...
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred CCeEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 774444443 34778899886522 2678888766655544322 12256655543 78999998543
Q ss_pred --CC-c----eEEe----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 --KS-A----LTSF----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 --~~-~----~~~~----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. + ...+ .+-...--++..++.-.++..-.. -+.+.++|..+|.
T Consensus 237 ~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----~G~i~lyDleTgt 291 (494)
T 1bpo_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGYIHLYDLETGT 291 (494)
T ss_dssp CTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----TSEEEEEETTTCC
T ss_pred ccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----CceEEEEecccce
Confidence 01 1 1111 112333456677766555544433 6778889988875
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.21 E-value=4.1 Score=43.13 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=103.6
Q ss_pred eeeChhHhhhhhcccccCc--ceeEEEEeccCCCCcccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCcccCCC
Q 018235 50 LQCDPTAYNSLHAFHIGWP--CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRRELV 122 (359)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP--~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~-----~~~n~l~i~~~~~l~~~~~~~~ 122 (359)
..+||..++.++.+.++-- ++|+..+. +...+ ..|+++||--.. ...+.|+|+++.+
T Consensus 810 ~lidp~t~~~i~~~~l~~nE~~~sv~~v~--~~~~~-----~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--------- 873 (1158)
T 3ei3_A 810 LIIDQHTFEVLHAHQFLQNEYALSLVSCK--LGKDP-----NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--------- 873 (1158)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEEC--CTTCC-----CCEEEEEEEECCTTCSSCCCEEEEEEEEET---------
T ss_pred EEEeCCCCeEEEEEeCCCCcceEEEEEEE--EccCC-----CEEEEEEeeecCCCCCCCCceEEEEEEEEC---------
Confidence 4566666666666665532 33444332 11111 258999995432 2578999999940
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 018235 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL 202 (359)
Q Consensus 123 ~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~ 202 (359)
...........+|+|.+++-.. | .++|+.+ .+|++|++...
T Consensus 874 -------------------------------~kL~lv~~~~v~g~v~al~~~~-g-~Lla~ig--~~l~vy~l~~~---- 914 (1158)
T 3ei3_A 874 -------------------------------GKLQTVAEKEVKGAVYSMVEFN-G-KLLASIN--STVRLYEWTTE---- 914 (1158)
T ss_dssp -------------------------------TEEEEEEEEEESSCEEEEEEET-T-EEEEEET--TEEEEEEECTT----
T ss_pred -------------------------------CEEEEEEEEEcCCcCEEEeeeC-C-EEEEEcC--CEEEEEECCCC----
Confidence 1122233345689999988664 4 5666544 78999999761
Q ss_pred ccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCe
Q 018235 203 AESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASV 279 (359)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V 279 (359)
+.+. ....+. .+..+.....+. +++.|+.-..|.+...+.....+ ..+ .-+...+
T Consensus 915 -----------------~~L~~~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L---~~~a~D~~~~~v 972 (1158)
T 3ei3_A 915 -----------------KELRTECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNF---EEIARDFNPNWM 972 (1158)
T ss_dssp -----------------SCEEEEEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEE---EEEEECCSCBCE
T ss_pred -----------------ceEEEEeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeE---EEEEeecccccE
Confidence 1111 111111 122323322454 89999988888876554322222 112 1244567
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
+++.+--.+ .++.+..+|.|.+.....
T Consensus 973 ta~~~ld~~--t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 973 SAVEILDDD--NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEEETT--EEEEEETTSEEEEEEECT
T ss_pred EEEEEEccC--cEEEEcCCCcEEEEecCC
Confidence 888776544 577788999999886654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.87 E-value=4.4 Score=36.43 Aligned_cols=151 Identities=7% Similarity=0.049 Sum_probs=79.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC---CCC
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---TTG 243 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~~ 243 (359)
.-+.++|.|++ .++++ ...|.|++++ ......+. ..+ .+........+|+++|+ +..
T Consensus 32 ~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g~~~~~~---------------~~~--v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 32 VPWALAFLPDG-GMLIA-ERPGRIRLFR-EGRLSTYA---------------ELS--VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CEEEEEECTTS-CEEEE-ETTTEEEEEE-TTEEEEEE---------------ECC--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CceEEEEcCCC-eEEEE-eCCCeEEEEE-CCCccEee---------------cce--EeecCCCCceeEEECCCCCCCCE
Confidence 45689999999 56665 4559999998 32100000 001 11122346789999998 431
Q ss_pred eEEEEcCC-----CcEEEEecCCCCcc---eecCcccc---CCCCCeEEEEecCCCCCEEEEEeC-------------CC
Q 018235 244 RLVTGDCN-----SCIYLWEPASDATW---NVDPNPFI---GHSASVEDLQWSPTEPDVFASCSV-------------DG 299 (359)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~---~~~~~~~~---~h~~~V~~v~~sp~~~~~las~s~-------------Dg 299 (359)
++++-... +.|..|+... ... ......+. +.......+.|.|++. ++++.+. .|
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~-~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g 169 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLG-ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGG 169 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECS-SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSS
T ss_pred EEEEEecCCCCCccEEEEEEeCC-CCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCce
Confidence 44443322 5677787753 211 00001121 1112236899999997 7776542 14
Q ss_pred cEEEEECCCC------------CCceEEeecCCCCEEEEEEcC-CCCeEEEEee
Q 018235 300 HIAIWDTRVG------------KSALTSFKAHNADVNVISWNR-CWLAVCWHLE 340 (359)
Q Consensus 300 ~I~iwD~r~~------------~~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~ 340 (359)
.|.-++.... ........+|. ..+.++|+| .+.+++....
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEEC
T ss_pred EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEcC
Confidence 5555555431 01111112332 256789999 6776666543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.54 E-value=4.3 Score=37.68 Aligned_cols=127 Identities=9% Similarity=0.100 Sum_probs=75.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC------CCCceEEEEeCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG------HKDEGYAIDWNP 239 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp 239 (359)
+.|..+..+|.| .++|..+ +..|.|-.+.............. ..+ .+++.- ...+|..+.|||
T Consensus 66 ~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~--------~~q-~~ty~l~~~~~~~~s~I~qVlWHP 134 (452)
T 3pbp_A 66 DDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD--------AFQ-IFHYSIDEEEVGPKSSIKKVLFHP 134 (452)
T ss_dssp CTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHH--------TTE-EEEEEGGGCC--CCCCEEEEEECT
T ss_pred CceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccccccc--------ccc-eeEEEcCCcccCCCCceeEEEecc
Confidence 367889999999 7777754 56899999884221111100000 001 122221 346899999999
Q ss_pred CCCC--eEEEEcCCCcEEEEecCCCCc-ce-e--cCc--cccCCCCCeEEEEecCCCCCEEEE-EeCCCcEEE
Q 018235 240 ITTG--RLVTGDCNSCIYLWEPASDAT-WN-V--DPN--PFIGHSASVEDLQWSPTEPDVFAS-CSVDGHIAI 303 (359)
Q Consensus 240 ~~~~--~l~sgs~dg~I~lwd~~~~~~-~~-~--~~~--~~~~h~~~V~~v~~sp~~~~~las-~s~Dg~I~i 303 (359)
.+.. .|++-..|++|++||+..... +. . ... .+..+...|.+++|.+.+-++.+. .+..|-|.-
T Consensus 135 l~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 135 KSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 8653 789999999999999976221 11 0 001 111233678899999876644332 335666654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=2.1 Score=41.83 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=45.7
Q ss_pred CCCcEEEEecCCCCc-ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC-CEEEEE
Q 018235 250 CNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVIS 327 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~ 327 (359)
..|.|..||+.++.. |.. .. + .++..-.....+. ++..++.|+.|+.||.+++ +.+.++..... ...-+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~---~~-~--~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g~~~~P~~ 522 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEK---ME-R--FAVWGGTMATAGD-LVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMT 522 (599)
T ss_dssp CCEEEEEECTTTCCEEEEE---EE-S--SCCCSBCEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEE
T ss_pred CcCeEEEEECCCCCEEeEe---cC-C--CCccCcceEecCC-EEEEECCCCeEEEEECCCC-CEEEEeeCCCCcEeccEE
Confidence 357888889877322 221 11 1 1111111122344 6666899999999999998 77777643321 122356
Q ss_pred EcCCCCeEEEE
Q 018235 328 WNRCWLAVCWH 338 (359)
Q Consensus 328 ~s~~~~~l~~~ 338 (359)
|..+|+..+..
T Consensus 523 y~~~G~qyv~~ 533 (599)
T 1w6s_A 523 YTHKGTQYVAI 533 (599)
T ss_dssp EEETTEEEEEE
T ss_pred EEeCCEEEEEE
Confidence 66677754443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=90.65 E-value=1 Score=44.42 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=68.7
Q ss_pred EEEeCC-CCCCeEEEEcCCC-----------cEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEe-CCC
Q 018235 234 AIDWNP-ITTGRLVTGDCNS-----------CIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCS-VDG 299 (359)
Q Consensus 234 ~l~~sp-~~~~~l~sgs~dg-----------~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s-~Dg 299 (359)
+.++.+ .+. +++.|+.+. .+.+||+.+ ++|.. ...+ ..+......+++.+++. +++.|+ .+.
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~-~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSD-RTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCC-CEEEECSCCCSSCEEEECTTSC-EEEECSSSTT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCC-CcEEe-CcccCCCCCCccccccCCCCCC-EEEeCCCCCC
Confidence 556666 665 777776543 588999987 55542 1122 12333344567778888 888888 456
Q ss_pred cEEEEECCCCCCceEEee-cCCCC-EEEEEEcCCCCeEEEEeeec-c-cceEEEEEeCcCC
Q 018235 300 HIAIWDTRVGKSALTSFK-AHNAD-VNVISWNRCWLAVCWHLEVM-M-EHFLFMILDCSRG 356 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~-~h~~~-V~~i~~s~~~~~l~~~~~~~-~-~d~~i~iwd~~~g 356 (359)
.+.+||..+. . -..+. .+... -.++...+++++++++.... . ....+.+||+.++
T Consensus 266 ~v~~yd~~t~-~-W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 266 KTSLYDSSSD-S-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CEEEEEGGGT-E-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ceEEecCcCC-c-eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 8999998875 2 11111 11111 12345556888888876321 1 1245778887664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.30 E-value=9.9 Score=34.19 Aligned_cols=154 Identities=10% Similarity=0.045 Sum_probs=82.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE----ecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK----FGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~sp 239 (359)
--..-+.|+|.|++ .++++-...|.|++++..... ..++.. +........+|+++|
T Consensus 30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~-------------------~~~v~~~~~v~~~g~~GllGia~~P 89 (347)
T 3das_A 30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGR-------------------KTELGEVPGVSPSGEGGLLGIALSP 89 (347)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------------------EEEEEECTTCCCBTTBSEEEEEECT
T ss_pred CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCc-------------------EeeecccCceeecCCCCceeeEecc
Confidence 34667899999999 677776558999988754310 011111 122234678999999
Q ss_pred C--CCCeEEEE---cCCCcEEEEecCCCC----c---ceecCcccc-CCCCCeEEEEecCCCCCEEEEEeC---------
Q 018235 240 I--TTGRLVTG---DCNSCIYLWEPASDA----T---WNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV--------- 297 (359)
Q Consensus 240 ~--~~~~l~sg---s~dg~I~lwd~~~~~----~---~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~--------- 297 (359)
+ ..+.|... ..++.|.-|.+.... . ..+....+. +....-..|.|.|++. ++++.+.
T Consensus 90 df~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd 168 (347)
T 3das_A 90 DYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQD 168 (347)
T ss_dssp THHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTC
T ss_pred ccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccC
Confidence 6 11244332 234566666554310 1 100001111 1112345799999997 7777542
Q ss_pred ----CCcEEEEECCCC--------CCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 298 ----DGHIAIWDTRVG--------KSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 298 ----Dg~I~iwD~r~~--------~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
-|.|.-.+.... ...+. -.+|.. ...++|+|++.+.+....
T Consensus 169 ~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g 221 (347)
T 3das_A 169 RKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFG 221 (347)
T ss_dssp TTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECC
T ss_pred CCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEecC
Confidence 244444444321 01111 134433 567899998887666543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=88.86 E-value=12 Score=33.56 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=78.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC---CC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---TT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~---~~ 242 (359)
..-..|+|.|++..++++ ...|.|++++........ . ...+ ..+.........|+++|+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~--~------------~~~~-~v~~~g~~g~~gia~~pdf~~~g 81 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAP--L------------SGVP-DVWAHGQGGLLDVVLAPDFAQSR 81 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCC--C------------BSCC-CCCCSTTCSEEEEEECTTHHHHC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeE--e------------cCCc-ccccCCCCCceeEEECCCCCCCC
Confidence 345789999999326655 457999999853311000 0 0011 011122335679999996 33
Q ss_pred CeEEEEcC-------CCcEEEEecCCCC-cc-----eecCcc---ccCCCCCeEEEEecCCCCCEEEEEeCC--------
Q 018235 243 GRLVTGDC-------NSCIYLWEPASDA-TW-----NVDPNP---FIGHSASVEDLQWSPTEPDVFASCSVD-------- 298 (359)
Q Consensus 243 ~~l~sgs~-------dg~I~lwd~~~~~-~~-----~~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~D-------- 298 (359)
.++++-.. ...|..|++.... .. +....+ ...|. -..|.|.|++. ++++.+..
T Consensus 82 ~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~ 158 (353)
T 2g8s_A 82 RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQD 158 (353)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGGC
T ss_pred EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccCC
Confidence 14444222 2356666664321 11 100011 11232 35699999997 66665432
Q ss_pred -----CcEEEEECCCC-------------CCceEEeecCCCCEEEEEEcC-CCCeEEEEee
Q 018235 299 -----GHIAIWDTRVG-------------KSALTSFKAHNADVNVISWNR-CWLAVCWHLE 340 (359)
Q Consensus 299 -----g~I~iwD~r~~-------------~~~~~~~~~h~~~V~~i~~s~-~~~~l~~~~~ 340 (359)
|.|.-++.... ...+.. .+|. ..+.++|+| .+.+.+....
T Consensus 159 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 159 LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEEEEC
T ss_pred CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEEecC
Confidence 45666665432 011111 2333 267899999 6766665543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.37 E-value=4.3 Score=36.45 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=61.5
Q ss_pred CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CCCEEEEEeCC-----Cc
Q 018235 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVD-----GH 300 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~D-----g~ 300 (359)
-..-.+|+|.|++. ++++ ...|.|++++ ......+.....+.........|+|+|+ +..++++.... ..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999986 5554 5579999998 2211111111112223457899999998 44366665543 56
Q ss_pred EEEEECCCCC----CceEE-eec---CCCCEEEEEEcCCCCeEEEE
Q 018235 301 IAIWDTRVGK----SALTS-FKA---HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 301 I~iwD~r~~~----~~~~~-~~~---h~~~V~~i~~s~~~~~l~~~ 338 (359)
|..++..... +.+.. +.. .......|.|.|+|.+.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 7777766420 11222 221 11124689999999765553
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=88.08 E-value=6.7 Score=35.07 Aligned_cols=75 Identities=7% Similarity=-0.043 Sum_probs=50.5
Q ss_pred ceEEEEeCCCCCCeEEEEcCC-CcEEEEecCCCCcceec---CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWNVD---PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~d-g~I~lwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
....++..++|+ ..++++.. +.|...+... +.... ..+........+.|+++|++. +|+.....|.|.-+|+
T Consensus 138 ~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG--~~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 138 GVVQSAQDRDGN-SYVAFALGMPAIARVSADG--KTVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEEEEEECTTSC-EEEEEEESSCEEEEECTTS--CCEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEEC
T ss_pred CCceeEECCCCC-EEEeCCCCCCeEEEEeCCC--CEEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcC
Confidence 467899999998 88888877 7777777643 21110 011112233467899999998 5555544999999999
Q ss_pred CCC
Q 018235 307 RVG 309 (359)
Q Consensus 307 r~~ 309 (359)
+..
T Consensus 214 ~~p 216 (334)
T 2p9w_A 214 SKP 216 (334)
T ss_dssp SSS
T ss_pred CCC
Confidence 854
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=86.03 E-value=6 Score=35.58 Aligned_cols=107 Identities=10% Similarity=-0.035 Sum_probs=60.7
Q ss_pred CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CCCEEEEEeC---C----
Q 018235 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSV---D---- 298 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~---D---- 298 (359)
-..-.+|+|.|++. |+.+..+|.|++++. .+...+.....+.........|+|+|+ +..++++-+. +
T Consensus 28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34567999999985 444556799999874 322111111111222356889999997 4436666543 3
Q ss_pred CcEEEEECCCCC------CceEE-eec-CCCCEEEEEEcCCCCeEEEE
Q 018235 299 GHIAIWDTRVGK------SALTS-FKA-HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 299 g~I~iwD~r~~~------~~~~~-~~~-h~~~V~~i~~s~~~~~l~~~ 338 (359)
..|..|+..... +.+.. +.. .....+.|.|.|+|.+++..
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 567777765420 11111 221 11124679999999866653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=15 Score=30.82 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=79.3
Q ss_pred EEecCC--CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCC-ccccccccccccCCCCCCCCCCCcEEecCCCC--ceEE
Q 018235 160 RKVAHQ--GCVNRIRAMTQNPHICASWADTGHVQVWDLRSH-LNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYA 234 (359)
Q Consensus 160 ~~~~H~--~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 234 (359)
+.+++. ..+..++|+|++ .+.|. .+|.++-.+.... ...+. .. .+..+... .--+
T Consensus 33 ~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~----------------~s-~t~IG~~Gw~~F~a 92 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWM----------------GR-AKKIGNGGWNQFQF 92 (236)
T ss_dssp EEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHH----------------HH-CEEEECSCGGGCSE
T ss_pred cccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCccccc----------------cc-ccEecccccccceE
Confidence 344552 477899999988 56665 6676555543221 00000 00 11111111 1357
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCC--CCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPAS--DATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~--~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+-|.|++. +.++ .||.|+-++..+ ...|+.....+.. -=..+..|.+.|++. +.|.. |+.+.-+-.-+...
T Consensus 93 ~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 93 LFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQ 166 (236)
T ss_dssp EEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTT
T ss_pred EEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCC
Confidence 88999886 5555 469998888743 2334321111111 114679999999997 66555 77754322221100
Q ss_pred -----ceEEee-cCCCCEEEEEEcCCCCeEEEE
Q 018235 312 -----ALTSFK-AHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 312 -----~~~~~~-~h~~~V~~i~~s~~~~~l~~~ 338 (359)
....+. ..-..-..+.|.+++.+.+..
T Consensus 167 ~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 167 DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred cccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence 111111 222233446688888776665
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=84.81 E-value=16 Score=32.82 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=80.1
Q ss_pred CceeeEEE--eCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 166 GCVNRIRA--MTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~--~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
..+..+++ +|.. ..+++....+|.+..|++....... ...+.+.+|..- ..+.++...+...
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~--------------~~~~lVR~f~lg-sq~EgcvvDd~~g 192 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY--------------ISGKKVRAFKMN-SQTEGMAADDEYG 192 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC--------------EEEEEEEEEECS-SCEEEEEEETTTT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc--------------ccceEEEEecCC-CCcceEEEcCCCC
Confidence 45666676 6643 3356666788999999986421100 013445666543 3667777777665
Q ss_pred CeEEEEcCCCcEEEEecCCCC--c-ceecCccc-cCC-CCCeEEEEe--cCCCC-CEEEEEeCCCcEEEEECCCCCCceE
Q 018235 243 GRLVTGDCNSCIYLWEPASDA--T-WNVDPNPF-IGH-SASVEDLQW--SPTEP-DVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~--~-~~~~~~~~-~~h-~~~V~~v~~--sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+|+.+-.+.-|..++..... . ..+ ..+ .++ ...++.|+. .+++. .+|+|+-.+.++.+||.....+.+.
T Consensus 193 -~Lyv~eEd~GIw~~da~p~~~~~~~~v--~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 193 -RLYIAEEDEAIWKFSAEPDGGSNGTVI--DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp -EEEEEETTTEEEEEECSTTSCSCCEEE--EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred -eEEEecccceEEEEeCCcCCCCCceEE--EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 89999888666666643211 1 111 112 122 347898888 45544 4777777889999999973324444
Q ss_pred Ee
Q 018235 315 SF 316 (359)
Q Consensus 315 ~~ 316 (359)
.+
T Consensus 270 ~f 271 (355)
T 3amr_A 270 DF 271 (355)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.63 E-value=27 Score=37.75 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=87.9
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC----CCceEEEEeCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH----KDEGYAIDWNPIT 241 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~ 241 (359)
..|.--+|-... .++-.+ +..|+.|++.. ...|+..|..| ...|....-+++.
T Consensus 106 e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~--------------------~s~P~k~fdR~~~L~~~QIinY~~d~~~ 162 (1630)
T 1xi4_A 106 DDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQ 162 (1630)
T ss_pred CCceEEEecCCC--eeEEEc-CCeEEEeccCC--------------------CCccHHHHhcchhcccCeeEEeeeCCCC
Confidence 456666775544 333322 35799999975 24555555555 3356666667777
Q ss_pred CCeEEEEc------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEec--CCCCCEEEEEeC---CCcEEEEECCCC-
Q 018235 242 TGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSV---DGHIAIWDTRVG- 309 (359)
Q Consensus 242 ~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~---Dg~I~iwD~r~~- 309 (359)
.-++++|- -.|.+.+|.....- .+.+.||.+.-..+... +....+|+.+.. .+.++|.++...
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeeccccc-----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 64444443 45888999886521 26677887665444442 222225554433 268999988543
Q ss_pred -CCceE-------Eee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 -KSALT-------SFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 -~~~~~-------~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.. .+. +-.....++..++.-.++..-.. -+.+.++|..+|.
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGYIHLYDLETGT 291 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----CceEEEEecccch
Confidence 01111 111 11222334555554444433333 5678888888875
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=82.36 E-value=32 Score=32.10 Aligned_cols=213 Identities=11% Similarity=0.100 Sum_probs=121.9
Q ss_pred CCCCceee-eChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCC
Q 018235 44 LEEGEELQ-CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELV 122 (359)
Q Consensus 44 ~~~~~~l~-~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~ 122 (359)
|+.+.-|+ |+-.+-.-|-+|.+.-|..--.|+-+. +.-+|.+| .++-|.+..
T Consensus 82 Lrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~----------~l~lVT~t--------aVyHWsi~~--------- 134 (494)
T 1bpo_A 82 LKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN----------TVALVTDN--------AVYHWSMEG--------- 134 (494)
T ss_dssp EEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----------EEEEECSS--------EEEEEESSS---------
T ss_pred EecCCeEEEEchHHhhhhcceecCCCceEEEecCCC----------eEEEEcCC--------eeEEecccC---------
Confidence 55555554 455566678888888888888899774 35566555 666666520
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecC--CCceeeEEEeCCCCcEEEEEe------CCCcEEEEE
Q 018235 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH--QGCVNRIRAMTQNPHICASWA------DTGHVQVWD 194 (359)
Q Consensus 123 ~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H--~~~V~~i~~~p~~~~~lat~s------~dg~V~iwd 194 (359)
+ ..|.......+. ...|-.-+.+++..-++.+|- -.|.+.+|.
T Consensus 135 ----------------~-------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 135 ----------------E-------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp ----------------S-------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ----------------C-------------CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 0 255555443221 345555666776633333322 237788998
Q ss_pred CCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC--CCCCCeEEEEcC---CCcEEEEecCCC--Cccee
Q 018235 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PITTGRLVTGDC---NSCIYLWEPASD--ATWNV 267 (359)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~sgs~---dg~I~lwd~~~~--~~~~~ 267 (359)
... +.-..+.||......+... +....+|+-+.. .+.++|-++... +....
T Consensus 186 ~er----------------------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 186 VDR----------------------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp STT----------------------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ccc----------------------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 876 3334566665433222221 111113333332 268999888543 11110
Q ss_pred cC---c-ccc--CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEE
Q 018235 268 DP---N-PFI--GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 268 ~~---~-~~~--~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~ 336 (359)
.. . .|. .-..---+++.|+... ++.....-|.|++||+.++ .++..-+-....|..-+-+....-++
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~t~~~~~~~Gi~ 316 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEATAGII 316 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccc-eeeeeecccCCceEEecccCCCCcEE
Confidence 00 0 011 1234455788888888 8889999999999999998 66665555555666555554444333
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.50 E-value=29 Score=35.80 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.1
Q ss_pred CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
.+.++...++.. ++.+-+.|+++|||++.++ +++.+.
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~-~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTN-QCVETI 273 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTT-EEEEEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCC-CeEeee
Confidence 567777777777 8899999999999999997 555554
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=81.04 E-value=35 Score=31.87 Aligned_cols=109 Identities=7% Similarity=0.056 Sum_probs=61.4
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC--cceecCcc-cc-----CCCCCeEEEEecCC----CCCEEEEEeCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWNVDPNP-FI-----GHSASVEDLQWSPT----EPDVFASCSVD 298 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~--~~~~~~~~-~~-----~h~~~V~~v~~sp~----~~~~las~s~D 298 (359)
.-.+|+|.|++.++|+.+...|.|++++..... ..+..+.. +. ........|+|+|+ +. ++++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EEEEEeCC
Confidence 456899999986556667789999999753211 11111111 11 12467889999996 44 55554421
Q ss_pred C------------cEEEEECCCC---------CCceEEee--cCCCCEEEEEEcCCCCeEEEEee
Q 018235 299 G------------HIAIWDTRVG---------KSALTSFK--AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 299 g------------~I~iwD~r~~---------~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
. .|.-|.+... .+.+..+. ........|.|.|+|.+.+....
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 3333544321 01233332 11224688999999977665443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=80.47 E-value=32 Score=30.81 Aligned_cols=114 Identities=10% Similarity=0.013 Sum_probs=64.1
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-cC-ccccCCCCCeEEEEecCC---CCCEEEEEe--
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-DP-NPFIGHSASVEDLQWSPT---EPDVFASCS-- 296 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~-~~~~~h~~~V~~v~~sp~---~~~~las~s-- 296 (359)
.+...-..-++|+|.|++. +|++--..|.|++++...+....+ .. ..+.........|+++|+ +..++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 4444445678999999997 777665589999998654221110 00 112234567899999995 332555433
Q ss_pred CCCcEEEEECCCC---------CCceEE-ee-cCCCCEEEEEEcCCCCeEEEE
Q 018235 297 VDGHIAIWDTRVG---------KSALTS-FK-AHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 297 ~Dg~I~iwD~r~~---------~~~~~~-~~-~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.+..|.-|.+... .+.+.. +. ........|.|.|+|.+.+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~ 157 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT 157 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence 3444555554431 011221 21 111234678999999766553
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=80.46 E-value=6.3 Score=33.16 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=58.2
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc--ceecCccccCCC--CCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--WNVDPNPFIGHS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--~~~~~~~~~~h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.+..|+|+|++. |... .+|.++-.+..+... |.-. .+..+.. ..-.++.|.|++. +.++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~--LYaV-~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGE--LYGV-LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSC--EEEE-ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESC
T ss_pred cceeEEECCCcc--EEEE-eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCC
Confidence 566999999775 4444 677766666543211 1100 0111110 1136889999998 6666 5698887775
Q ss_pred CCCCC-----ceEEeec-CCCCEEEEEEcCCCCeEEEE
Q 018235 307 RVGKS-----ALTSFKA-HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 307 r~~~~-----~~~~~~~-h~~~V~~i~~s~~~~~l~~~ 338 (359)
.+... ....+.. -=..+..|.|.|+|.+.+..
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 33211 1111211 11357999999999877766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.003 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 2e-08
Identities = 21/166 (12%), Positives = 47/166 (28%), Gaps = 26/166 (15%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
++ + + S A ++WD+R
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------------------GMCRQ 220
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
F GH+ + AI + P TG ++ L++ A + + +
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICGITSVS 277
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
+S + + + D + +WD H+ V+ +
Sbjct: 278 FSKSG-RLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVT 321
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.4 bits (98), Expect = 5e-05
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
++ ++ + L+ G + +W+ V GH V L + +
Sbjct: 274 TSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGV----LAGHDNRVSCLGVTD-DGMAV 327
Query: 293 ASCSVDGHIAIWD 305
A+ S D + IW+
Sbjct: 328 ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.001
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 261 SDATWNVDPNPFI---------GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311
S T N+DP I GH A + + W + S S DG + IWD+
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYTTNK 89
Query: 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHF 346
+ + ++ V ++ V +
Sbjct: 90 -VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.2 bits (113), Expect = 6e-07
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 264 TWNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
W P GH + V + + P V S S D I +WD G + K H
Sbjct: 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDF-ERTLKGHT 59
Query: 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353
V IS++ + M
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 8/143 (5%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H+ V I ++ + S A + + + VS L
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM--WDVSTGMCL 240
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL 282
+ GH + + ++ +++ + + +W+ + H V L
Sbjct: 241 MTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKT----LNAHEHFVTSL 295
Query: 283 QWSPTEPDVFASCSVDGHIAIWD 305
+ T P + SVD + +W+
Sbjct: 296 DFHKTAP-YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 25/172 (14%), Positives = 58/172 (33%), Gaps = 8/172 (4%)
Query: 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217
++ R+ Q+ + AS ++ V+VW + + E +S
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECIS 192
Query: 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA 277
+ G + L++G + I +W+ ++ +GH
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDN 248
Query: 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
V + + SC+ D + +WD + + + + AH V + ++
Sbjct: 249 WVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFH 298
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 4/123 (3%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
WN T ++ N ++++E + + V H+ V + W+P +
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE--LKEHNGQVTGVDWAPDS-NRI 66
Query: 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352
+C D + +W + T +
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 353 CSR 355
+
Sbjct: 127 END 129
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.1 bits (84), Expect = 0.003
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 173 AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232
+ N A + V + D + + + A +S LV GH
Sbjct: 208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV-AAGHDCFP 266
Query: 233 YAIDWNPITTGRLVTGDCNS-------------CIYLWEPASDATWNVDPNPFI--GHSA 277
++ G + + + + + + H
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326
Query: 278 SVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317
SV + + F + +DG ++IWD R +SAL K
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.4 bits (82), Expect = 0.004
Identities = 22/177 (12%), Positives = 38/177 (21%), Gaps = 25/177 (14%)
Query: 164 HQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V I N A + V +++ +
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------------NKWVQ 43
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+ + H + +DW P + R+VT + Y+W P I
Sbjct: 44 VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL---KGRTWKPTLVILRINRAAR 99
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338
FA S I+I + +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL 333
GH+ ++ L S S +GHI WD G S H + I
Sbjct: 10 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 334 AVCWHLEVMMEHF 346
+ ++
Sbjct: 69 LFTVSWDDHLKVV 81
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 5e-06
Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 25/176 (14%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
+ V + + A+ + V+VWD + G S
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENE 248
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS--------DATWNVDPNPFIGH 275
GHKD Y++ + +V+G + + LW + +IGH
Sbjct: 249 SGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331
V + + + + S S D + WD + G L + H V ++
Sbjct: 308 KDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANG 361
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H+ V + T++ S + V++W+L++ N + ++ +
Sbjct: 252 GHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNLQNANNK---------SDSKTPNSGTCE 301
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL 282
V + GHKD ++ +++G + + W+ S + GH SV +
Sbjct: 302 VTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLM----LQGHRNSVISV 356
Query: 283 QWSPT-----EPDVFASCSVDGHIAIWDTR 307
+ E +VFA+ S D IW +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 13/110 (11%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
+ +D + + + N L+ PA +V+ + + H++ V +++S +
Sbjct: 19 FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYL 77
Query: 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVM 342
A+ + ++ S + +A + L +
Sbjct: 78 ATGC-NKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 5e-05
Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRC 331
+ D++ P++ + S DG + ++ + L + + ++
Sbjct: 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 332 WLAVCWHLEVMMEHFLFMILDC 353
+ V E ++
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGS 89
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 14/123 (11%), Positives = 29/123 (23%), Gaps = 2/123 (1%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286
KD I P + L+ + + +++ A NVD + + + +
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFID 66
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHF 346
+V G I D S + +
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 347 LFM 349
+
Sbjct: 127 IDP 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 24/190 (12%), Positives = 50/190 (26%), Gaps = 28/190 (14%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
H V I + + + AD ++V+D + + L+
Sbjct: 11 HMTSV--ITCLQFEDNYVITGADDKMIRVYDSIN---------------------KKFLL 47
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
+ GH +A+ + G LV+G + + +W+ +V
Sbjct: 48 QLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMM 343
+ S D + +W S + H+ + + V M
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162
Query: 344 EHFLFMILDC 353
Sbjct: 163 SVRTVSGHGN 172
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 32/147 (21%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
G I + + S + +++WD+
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG------------------------A 209
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP-----FIGHSAS 278
+ + R+V+G + I +W+ + + HS
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWD 305
V LQ+ S S D I IWD
Sbjct: 270 VFRLQFDEF---QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 4/76 (5%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL 333
S V LQ+ S D I IWD + H V + ++ +
Sbjct: 13 ETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDERVI 68
Query: 334 AVCWHLEVMMEHFLFM 349
+ +
Sbjct: 69 ITGSSDSTVRVWDVNT 84
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 15/117 (12%)
Query: 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287
I +V+G ++ I LW+ A V +
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-------RCIRF 226
Query: 288 EPDVFASCSVDGHIAIWDTR--------VGKSALTSFKAHNADVNVISWNRCWLAVC 336
+ S + DG I +WD G L + H+ V + ++ +
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSS 283
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287
H+ ++ + V+ ++ + W A+ S+SV S
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVD 317
Query: 288 EPDVFASCSVDGHIAIWD 305
+ + S D +++
Sbjct: 318 D-KYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.003
Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 9/166 (5%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
N N + + S+ + + + +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
+ + +++ + P V + ++ L D H + V L+
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH------VNKPDKYQLHLHESCVLSLK 272
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
++ F S D + W T G S S ++ V +
Sbjct: 273 FAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDIS 315
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 4/142 (2%)
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN-VDPNP 271
P + + + H + A+ + R V C+ +W+ + + V
Sbjct: 35 GPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGGKGCVKVWDISHPGNKSPVSQLD 92
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331
+ + + P ++IWD + + +A
Sbjct: 93 CLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 332 WLAVCWHLEVMMEHFLFMILDC 353
VC+ ++ + +
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQ 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 12/141 (8%), Positives = 38/141 (26%), Gaps = 11/141 (7%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--------IGHSAS 278
H + +++ V+ + + +W+ N + + H
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338
++ ++ E + A+ S G + + ++ + A+ W
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 339 LEVMMEHFLFMILDCSRGEIR 359
++ +G
Sbjct: 129 ASNDRLLSHRLVATDVKGTTY 149
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 32/169 (18%)
Query: 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224
QG NR+ ++ + S + ++VWD+ + + +
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---------------------NCIHT 212
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW 284
GH+ ++ LV+G+ +S + +W D G + +
Sbjct: 213 LTGHQSLTSGMELKD---NILVSGNADSTVKIW----DIKTGQCLQTLQGPNKHQSAVTC 265
Query: 285 SPTEPDVFASCSVDGHIAIWDTRVGKSALT----SFKAHNADVNVISWN 329
+ + S DG + +WD + G+ V I +
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.003
Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 3/80 (3%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL 333
GH V + S S D + +W GK L + H V +
Sbjct: 14 GHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDNII 70
Query: 334 AVCWHLEVMMEHFLFMILDC 353
+
Sbjct: 71 ISGSTDRTLKVWNAETGECI 90
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 8e-04
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 6/140 (4%)
Query: 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231
A +Q TG + DL S + + + + + +
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-EPD 290
I + + + + + ++ + S +P
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-----FEMGHEIDSINVSQDEKPL 314
Query: 291 VFASCSVDGHIAIWDTRVGK 310
++A + D + I D G+
Sbjct: 315 LYALSTGDKTLYIHDAESGE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331
GH+ + L +P S S DG I W + + + H+ + + ++
Sbjct: 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSS------SMHQDHSNLIVSLDNSKA 57
Query: 332 WLAVCWHLEVMMEHFLFMILDC 353
+ ++ +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.4 bits (82), Expect = 0.004
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 8/118 (6%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
+A D++P G L+ ++ + + + + ++ F
Sbjct: 6 FAEDFSP-LDGDLIAFVSRGQAFIQDVSGTYVLK------VPEPLRIRYVRRGGDTKVAF 58
Query: 293 ASCSVDG-HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349
+ +G + I+D R GK+ N + N + V +M L
Sbjct: 59 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.91 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.9 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.89 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.89 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.89 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.88 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.87 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.85 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.83 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.81 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.79 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.78 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.78 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.77 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.76 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.73 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.7 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.66 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.54 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.54 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.51 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.5 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.49 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.42 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.4 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.3 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.29 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.15 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.06 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.92 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.9 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.84 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.61 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.49 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.49 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.29 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.22 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.02 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.85 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.85 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.77 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.71 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.64 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.6 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.48 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.33 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.31 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.3 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.91 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.38 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.2 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.75 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.61 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.3 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.64 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.26 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 88.67 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 88.37 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 86.82 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 86.65 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 86.48 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 84.07 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 82.46 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.15 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.6e-26 Score=205.35 Aligned_cols=206 Identities=16% Similarity=0.255 Sum_probs=171.1
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+..++.|.|++ .+|+.|. .++.|.||++..
T Consensus 58 ~~~v~~~~~sp~g-----------~~latg~-----~dg~i~iwd~~~-------------------------------- 89 (311)
T d1nr0a1 58 SHQTTVAKTSPSG-----------YYCASGD-----VHGNVRIWDTTQ-------------------------------- 89 (311)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEESSS--------------------------------
T ss_pred CCCEEEEEEeCCC-----------CeEeccc-----cCceEeeeeeec--------------------------------
Confidence 4678899999985 4888887 477999998831
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
....+...+..|.+.|++++|+|++ .++++++. +..++||++.. ..++.
T Consensus 90 -------~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~---------------------~~~~~ 140 (311)
T d1nr0a1 90 -------TTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDT---------------------GTSNG 140 (311)
T ss_dssp -------TTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTT---------------------CCBCB
T ss_pred -------cccccccccccccCccccccccccc-ccccccccccccccccccccc---------------------ccccc
Confidence 1334445667899999999999999 66777665 45699999987 56667
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+.+|...|++++|+|+++..|++|+.||.|++||+++ .+.. ..+.+|...|+++.|+|++. +|++++.|+.|++
T Consensus 141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~---~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~ 215 (311)
T d1nr0a1 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFK---STFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVL 215 (311)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred cccccccccccccccccceeeecccccccccccccccc-cccc---cccccccccccccccCcccc-ccccccccccccc
Confidence 78899999999999999986689999999999999987 4443 56778999999999999998 9999999999999
Q ss_pred EECCCCCCceEEe-------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 304 WDTRVGKSALTSF-------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 304 wD~r~~~~~~~~~-------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
||++.+ ..+..+ .+|...|++++|+|++.+|+++.. |+.|++||.+++++
T Consensus 216 ~d~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~----Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 216 YNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKV 272 (311)
T ss_dssp EETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEE
T ss_pred cccccc-cccccccccccccccccccccccccCCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 999987 444443 368899999999999999998765 89999999988753
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.3e-25 Score=207.51 Aligned_cols=215 Identities=14% Similarity=0.212 Sum_probs=171.7
Q ss_pred hcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCC
Q 018235 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (359)
Q Consensus 61 ~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 140 (359)
|.|.. =|..++.|-||. .+|++|+ .++.|.||++..
T Consensus 3 ~~~~~-~pIt~~~~s~dg-----------~~la~~~-----~~~~i~iw~~~~--------------------------- 38 (371)
T d1k8kc_ 3 HSFLV-EPISCHAWNKDR-----------TQIAICP-----NNHEVHIYEKSG--------------------------- 38 (371)
T ss_dssp EESCS-SCCCEEEECTTS-----------SEEEEEC-----SSSEEEEEEEET---------------------------
T ss_pred CCCCC-CCeEEEEECCCC-----------CEEEEEe-----CCCEEEEEECCC---------------------------
Confidence 44444 466788888885 3677776 356899999841
Q ss_pred CCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC
Q 018235 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (359)
Q Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (359)
.+......+.+|.++|++++|+|++ ++|+|++.|++|+|||+... ...
T Consensus 39 ------------~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~-------------------~~~ 86 (371)
T d1k8kc_ 39 ------------NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TWK 86 (371)
T ss_dssp ------------TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EEE
T ss_pred ------------CCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccc-------------------ccc
Confidence 1334556678999999999999998 79999999999999999762 134
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 221 ~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
+...+.+|...+++++|+|++. .|++|+.|++|++|++..............+|...|.+++|+|++. +|++|+.|++
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~ 164 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFK 164 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSC
T ss_pred cccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCcE
Confidence 4566778999999999999998 9999999999999998764433222244567999999999999998 9999999999
Q ss_pred EEEEECCCCC-----------------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 301 IAIWDTRVGK-----------------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 301 I~iwD~r~~~-----------------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|++||++... ..+.....|...|++++|+|++.+++++.. |+.|++||...+.
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~----d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLADADKKM 234 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEEEGGGTT
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc----CCcceEEeeeccc
Confidence 9999987541 133445788999999999999999988765 8999999987754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=3.8e-25 Score=199.84 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=146.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|++++|+|++ ++||+|+.||+|+|||+... .......+.+|...|.+++|+
T Consensus 52 ~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~v~~v~~s 111 (311)
T d1nr0a1 52 EIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWD 111 (311)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEEC
T ss_pred EEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecc-------------------ccccccccccccCcccccccc
Confidence 3457899999999999998 89999999999999999872 122335688999999999999
Q ss_pred CCCCCeEEEEcC--CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 239 PITTGRLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 239 p~~~~~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|++. +|++++. +..+++|++.+ ++.. ..+.+|...|.+++|+|++..+|++|+.||.|++||+++. .....+
T Consensus 112 ~d~~-~l~~~~~~~~~~~~v~~~~~-~~~~---~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-~~~~~~ 185 (311)
T d1nr0a1 112 SESK-RIAAVGEGRERFGHVFLFDT-GTSN---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTF 185 (311)
T ss_dssp TTSC-EEEEEECCSSCSEEEEETTT-CCBC---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEE
T ss_pred cccc-cccccccccccccccccccc-cccc---ccccccccccccccccccceeeeccccccccccccccccc-cccccc
Confidence 9998 8888875 45699999987 4443 6788999999999999999978999999999999999987 677778
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|...|+++.|+|++.+++.+.. ++.+++|+...+.
T Consensus 186 ~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 186 GEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT 222 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred ccccccccccccCccccccccccc----ccccccccccccc
Confidence 899999999999999999988766 8899999987654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=9.5e-25 Score=196.44 Aligned_cols=220 Identities=12% Similarity=0.094 Sum_probs=172.4
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-|..++.|.|+. .+|+.|. .++.|.||++.
T Consensus 55 ~~~I~~l~~s~~~-----------~~l~sgs-----~Dg~v~iWd~~--------------------------------- 85 (340)
T d1tbga_ 55 LAKIYAMHWGTDS-----------RLLVSAS-----QDGKLIIWDSY--------------------------------- 85 (340)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTTEEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEE-----CCCceeeeecc---------------------------------
Confidence 4567788998885 4788887 46799999873
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc------cccc----------
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES------ETIV---------- 209 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~------~~~~---------- 209 (359)
.......+..|.+.|++++|+|++ .++++++.|+.|.+|+........... ....
T Consensus 86 --------~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (340)
T d1tbga_ 86 --------TTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp --------TTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTE
T ss_pred --------cceeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceecccccccccccccccccc
Confidence 344556777899999999999999 899999999999999976532111000 0000
Q ss_pred ---c-----------------------------------------CCCCC------CCCCCCcEEecCCCCceEEEEeCC
Q 018235 210 ---G-----------------------------------------QGAPQ------VSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 210 ---~-----------------------------------------~~~~~------~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
. ...+. .....++.++.+|...|++++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p 236 (340)
T d1tbga_ 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC
Confidence 0 00000 033456678889999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
++. +|++|+.||.|++|+++...... ......|...|.+++|+|++. +|++|+.||.|+|||++++ .++..+.+|
T Consensus 237 ~~~-~l~s~s~d~~i~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~-~~~~~~~~H 311 (340)
T d1tbga_ 237 NGN-AFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA-DRAGVLAGH 311 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTC-CEEEEECCC
T ss_pred CCC-EEEEEeCCCeEEEEeeccccccc--ccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCC-cEEEEEcCC
Confidence 998 99999999999999998743222 123445778899999999998 9999999999999999988 788889999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
...|++|+|+|++.+|+.+.. |+.|++||
T Consensus 312 ~~~V~~l~~s~d~~~l~s~s~----Dg~v~iWd 340 (340)
T d1tbga_ 312 DNRVSCLGVTDDGMAVATGSW----DSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEET----TSCEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEcc----CCEEEEeC
Confidence 999999999999999988766 89999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=1.1e-23 Score=186.57 Aligned_cols=166 Identities=17% Similarity=0.310 Sum_probs=147.3
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
......+.+|...+.+++|+|++ .+|++++.||.|++|++.. ..+...+.+|...+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~---------------------~~~~~~~~~~~~~i~~ 190 (317)
T d1vyhc1 133 GYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT---------------------KECKAELREHRHVVEC 190 (317)
T ss_dssp CCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEE
T ss_pred ceeeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeecc---------------------ceeeEEEecCCCCceE
Confidence 34456677899999999999998 7999999999999999987 5677888899999999
Q ss_pred EEeCCCCC-------------------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE
Q 018235 235 IDWNPITT-------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 235 l~~sp~~~-------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (359)
++|+|... ..+++|+.|+.|++|++++ +..+ ..+.+|...|.+++|+|++. +|++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~-~l~s~ 265 (317)
T d1vyhc1 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCL---MTLVGHDNWVRGVLFHSGGK-FILSC 265 (317)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEE---EEEECCSSCEEEEEECSSSS-CEEEE
T ss_pred EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEE---EEEeCCCCCEEEEEECCCCC-EEEEE
Confidence 99988643 1689999999999999987 5554 67889999999999999998 99999
Q ss_pred eCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+.||.|+|||++++ +++..+.+|...|++++|+|++.+|+.+.. |+.|++||
T Consensus 266 ~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~----Dg~i~iWd 317 (317)
T d1vyhc1 266 ADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSV----DQTVKVWE 317 (317)
T ss_dssp ETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEET----TSEEEEEC
T ss_pred ECCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeC----CCeEEEeC
Confidence 99999999999998 788899999999999999999999998776 99999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.9e-23 Score=187.88 Aligned_cols=215 Identities=14% Similarity=0.237 Sum_probs=175.7
Q ss_pred hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCC
Q 018235 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (359)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~ 137 (359)
..+++....-+..++.|-|++ .+|+.|. ++.|.||++....
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g-----------~~latg~------dg~V~iWd~~~~~---------------------- 83 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPT-----------RHVYTGG------KGCVKVWDISHPG---------------------- 83 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSS-----------SEEEEEC------BSEEEEEETTSTT----------------------
T ss_pred eEEEECCCCCcEEEEEECCCC-----------CEEEEEE------CCEEEEEEccCCc----------------------
Confidence 445666667888899999985 4777775 4579999884110
Q ss_pred CCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCC
Q 018235 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (359)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (359)
...+........|.+.|++++|+|++ .+|++++.||.|++||+...
T Consensus 84 --------------~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~------------------- 129 (337)
T d1gxra_ 84 --------------NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP------------------- 129 (337)
T ss_dssp --------------CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC-------------------
T ss_pred --------------ccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeeccccccccccccc-------------------
Confidence 01444556667899999999999999 78999999999999998762
Q ss_pred CCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
.......+.+|...+.++.|+|++. +|++++.++.|++|++++ +... ..+.+|...|.+++|+|++. .+++|+.
T Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~-~~~~---~~~~~~~~~v~~l~~s~~~~-~~~~~~~ 203 (337)
T d1gxra_ 130 TPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHN-QTLV---RQFQGHTDGASCIDISNDGT-KLWTGGL 203 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEE---EEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccc-cccc---cccccccccccccccccccc-ccccccc
Confidence 1334567788999999999999998 999999999999999987 4443 56778999999999999998 9999999
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.|++||++++ +.+..+ .|...|++++|+|++.+++.+.. ++.+++|+.+.+.
T Consensus 204 d~~v~i~d~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 204 DNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPD 257 (337)
T ss_dssp TSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSC
T ss_pred cccccccccccc-eeeccc-ccccceEEEEEcccccccceecc----ccccccccccccc
Confidence 999999999987 555444 58899999999999999988776 8889999988764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.4e-22 Score=184.25 Aligned_cols=201 Identities=16% Similarity=0.256 Sum_probs=169.3
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
=+..++.|.|+. .+|++|+ .++.|.||++..
T Consensus 98 ~~I~~v~~s~dg-----------~~l~s~~-----~dg~i~iwd~~~--------------------------------- 128 (337)
T d1gxra_ 98 NYIRSCKLLPDG-----------CTLIVGG-----EASTLSIWDLAA--------------------------------- 128 (337)
T ss_dssp SBEEEEEECTTS-----------SEEEEEE-----SSSEEEEEECCC---------------------------------
T ss_pred CcEEEEEEcCCC-----------CEEEEee-----cccccccccccc---------------------------------
Confidence 356788888885 4677777 467899998731
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..+.+...+..|...|..+.|+|++ .++++++.++.|++|++.. .++.....
T Consensus 129 ------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~~ 180 (337)
T d1gxra_ 129 ------PTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQ 180 (337)
T ss_dssp ------C--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEEC
T ss_pred ------ccccccccccccccccccccccccc-ccccccccccccccccccc---------------------cccccccc
Confidence 1555667778899999999999998 8999999999999999987 46667788
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+|...+.+++|++++. .+++|+.|+.|++||+++ ++.+ . ...|...|.+++|+|++. +|++++.|+.|++||+
T Consensus 181 ~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~-~~~~---~-~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~ 253 (337)
T d1gxra_ 181 GHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLRE-GRQL---Q-QHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHV 253 (337)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEE---E-EEECSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred cccccccccccccccc-cccccccccccccccccc-ceee---c-ccccccceEEEEEccccc-ccceeccccccccccc
Confidence 9999999999999998 999999999999999987 4433 2 335889999999999998 9999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.. . ......|...|++++|+|++.+++.+.. |+.|++|+...+.
T Consensus 254 ~~~-~-~~~~~~~~~~i~~v~~s~~g~~l~s~s~----Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 254 NKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGK----DNLLNAWRTPYGA 298 (337)
T ss_dssp TSS-C-EEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred ccc-c-cccccccccccceEEECCCCCEEEEEeC----CCeEEEEECCCCC
Confidence 986 3 4456789999999999999999988765 8999999998775
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=5e-23 Score=185.01 Aligned_cols=173 Identities=13% Similarity=0.215 Sum_probs=143.6
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
....++.+|.+.|++++|+|++ .+||||+.||+|+|||+.. ...+..+.+|...|.++
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~v 103 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMTC 103 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------TEEEEEEECSCSCEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeeccc---------------------ceeEEEEecccccEEee
Confidence 3446788999999999999998 7999999999999999987 56677888899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCc---------------------------------------------------
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------------------------------------- 264 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------------- 264 (359)
+|+|++. +|++|+.|+.|++|+......
T Consensus 104 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 104 AYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp EECTTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred Eeeccce-eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999987 899999999998887643200
Q ss_pred ---------------c-----------------eecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 265 ---------------W-----------------NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 265 ---------------~-----------------~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
. ......+.+|...|++++|+|++. +|++|+.||.|++||++.. ..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~-~~ 260 (340)
T d1tbga_ 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD-QE 260 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EE
T ss_pred cceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccc-cc
Confidence 0 000123457899999999999998 9999999999999999987 55
Q ss_pred eEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 LTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..+ ..|...|++++|+|++.+|+.+.. ++.|++||..+++
T Consensus 261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp EEEECCTTCCSCEEEEEECSSSCEEEEEET----TSCEEEEETTTCC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEEC----CCEEEEEECCCCc
Confidence 4444 566778999999999999998876 8899999988765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.7e-22 Score=181.73 Aligned_cols=217 Identities=11% Similarity=0.079 Sum_probs=163.9
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+..++.|.|+.. ..+|+.|. .+..|.||++..-.....
T Consensus 64 ~~v~~v~fsP~~~---------g~~lasgs-----~Dg~i~iWd~~~~~~~~~--------------------------- 102 (325)
T d1pgua1 64 SVVTTVKFSPIKG---------SQYLCSGD-----ESGKVIVWGWTFDKESNS--------------------------- 102 (325)
T ss_dssp SCEEEEEECSSTT---------CCEEEEEE-----TTSEEEEEEEEEEGGGTE---------------------------
T ss_pred CCEEEEEEeeCCC---------CCEEEEEe-----CCCCEEEeeecCCcceee---------------------------
Confidence 3566778877532 14677776 567899999852111000
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEE-eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASW-ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
...........|.++|++++|++++..+++.+ +.++.+++|+... ..++..+
T Consensus 103 ------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 155 (325)
T d1pgua1 103 ------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---------------------GNSLGEV 155 (325)
T ss_dssp ------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---------------------CCEEEEC
T ss_pred ------eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc---------------------cccceee
Confidence 01122244567999999999999994443333 3467899999886 5778889
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+|...+.+++|+|.+..++++++.|+.|++|+... .+.......+.+|...|.+++|+|++..+|++|+.||.|+|||
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd 234 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred eecccccccccccccccceEEEeecccccccccccc-cccceecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence 999999999999999986788999999999999876 3333222445678899999999998666999999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEc---CCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWN---RCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s---~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++++ ..+..+.+|..++..+.|+ +++.+|+.+.. |+.|+|||..+++
T Consensus 235 ~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~----D~~i~iwd~~~~~ 284 (325)
T d1pgua1 235 GKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA----DATIRVWDVTTSK 284 (325)
T ss_dssp TTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEET----TSEEEEEETTTTE
T ss_pred eccc-cccccccccccccccceeeeeccCCCEEEEEeC----CCeEEEEECCCCC
Confidence 9998 7788888888776555555 67888887765 8999999998775
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.4e-22 Score=184.80 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=163.1
Q ss_pred hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCC
Q 018235 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (359)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~ 137 (359)
.........-+..++.|.|+. .+|++|+ .++.|.|+++.
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~-----------~~l~s~~-----~dg~v~i~~~~------------------------- 151 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDG-----------KFLATGA-----EDRLIRIWDIE------------------------- 151 (388)
T ss_dssp ------CCCCBEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT-------------------------
T ss_pred ccccccCCCCCEEEEEECCCC-----------Ccceecc-----ccccccccccc-------------------------
Confidence 333333444556678888874 4777777 46689998762
Q ss_pred CCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc------------
Q 018235 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES------------ 205 (359)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~------------ 205 (359)
.........+|.+.|+++.+++.+ ..+++++.+|.|++||+..........
T Consensus 152 ----------------~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 152 ----------------NRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp ----------------TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred ----------------cccccccccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccccC
Confidence 344556677899999999999988 788889999999999987632211000
Q ss_pred ---cccccCCCCC-C-----CCCC-------CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce---
Q 018235 206 ---ETIVGQGAPQ-V-----SNQS-------PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--- 266 (359)
Q Consensus 206 ---~~~~~~~~~~-~-----~~~~-------~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~--- 266 (359)
........+. + .... ......+|...|++++|+|++. +|++|+.||.|++||++......
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC----------
T ss_pred CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccc
Confidence 0000000010 0 1111 1223457888999999999998 99999999999999997632210
Q ss_pred -----ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE------cCCCCeE
Q 018235 267 -----VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW------NRCWLAV 335 (359)
Q Consensus 267 -----~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~------s~~~~~l 335 (359)
........|...|.+++|+|++. +|++|+.||.|+|||++++ +++..+.+|...|.+++| +|++.+|
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred cccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence 00133457899999999999998 9999999999999999998 788899999999999975 5688888
Q ss_pred EEEeeecccceEEEEEeCc
Q 018235 336 CWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 336 ~~~~~~~~~d~~i~iwd~~ 354 (359)
+.+.. |+.|++|+.+
T Consensus 372 ~s~s~----Dg~I~iW~~~ 386 (388)
T d1erja_ 372 ATGSG----DCKARIWKYK 386 (388)
T ss_dssp EEEET----TSEEEEEEEE
T ss_pred EEEeC----CCEEEEEeee
Confidence 88766 9999999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=6.3e-22 Score=182.38 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=156.2
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.=|..++.|.|+. .+|+.|+ .++.|+||++..
T Consensus 51 ~~~V~~l~fsp~~-----------~~l~s~s-----~D~~i~vWd~~~-------------------------------- 82 (371)
T d1k8kc_ 51 NGQVTGVDWAPDS-----------NRIVTCG-----TDRNAYVWTLKG-------------------------------- 82 (371)
T ss_dssp SSCEEEEEEETTT-----------TEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEE-----CCCeEEEEeecc--------------------------------
Confidence 4578899999985 3777776 366899999841
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
........+.+|...|++++|+|++ ..+++++.++.|++|++...... .......
T Consensus 83 -------~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~-----------------~~~~~~~ 137 (371)
T d1k8kc_ 83 -------RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------------WVCKHIK 137 (371)
T ss_dssp -------TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------------EEEEEEC
T ss_pred -------ccccccccccccccccccccccccc-ccceeecccCcceeeeeeccccc-----------------ccccccc
Confidence 0222334556899999999999998 79999999999999998762110 1123445
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce--------------ecCccccCCCCCeEEEEecCCCCCE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--------------VDPNPFIGHSASVEDLQWSPTEPDV 291 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~--------------~~~~~~~~h~~~V~~v~~sp~~~~~ 291 (359)
..|...|.+++|+|++. +|++|+.||+|++|+........ .......+|...|.+++|+|++. +
T Consensus 138 ~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~ 215 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-R 215 (371)
T ss_dssp TTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-E
T ss_pred ccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-c
Confidence 67889999999999998 99999999999999986521000 00123457889999999999998 9
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEe
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
|++++.|+.|++||++.+ ..+..+..|..+|++++|+|++.+++.+.
T Consensus 216 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~ 262 (371)
T d1k8kc_ 216 VAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAGH 262 (371)
T ss_dssp EEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred ccccccCCcceEEeeecc-cceeeeecccccceeeeecCCCCEEEEEc
Confidence 999999999999999987 78888899999999999999998887653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=7.4e-22 Score=181.51 Aligned_cols=248 Identities=13% Similarity=0.153 Sum_probs=145.9
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
.-.=+..++.|-||+ .+|++|+ ++.|.||++..-....... ..
T Consensus 60 ~H~~~V~~l~fs~dg-----------~~lasg~------d~~i~iW~~~~~~~~~~~~------------~~-------- 102 (388)
T d1erja_ 60 DHTSVVCCVKFSNDG-----------EYLATGC------NKTTQVYRVSDGSLVARLS------------DD-------- 102 (388)
T ss_dssp ECSSCCCEEEECTTS-----------SEEEEEC------BSCEEEEETTTCCEEEEEC------------C---------
T ss_pred CCCCcEEEEEECCCC-----------CEEEEEe------CCeEEEEEecccceEeeec------------cc--------
Confidence 344577889998985 4777775 3579999874221111100 00
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccc--ccccc---cCCCCCC--
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE--SETIV---GQGAPQV-- 216 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~--~~~~~---~~~~~~~-- 216 (359)
...... ...........|...|++++|+|++ .+|++|+.||.|++|+.......... ..... .......
T Consensus 103 ~~~~~~---~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 178 (388)
T d1erja_ 103 SAANKD---PENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178 (388)
T ss_dssp -------------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred cccccc---ccccccccccCCCCCEEEEEECCCC-Ccceecccccccccccccccccccccccccccccccccccccccc
Confidence 000000 1222334556799999999999998 89999999999999998762211000 00000 0000000
Q ss_pred ---CCCCCcEEe----------cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce---ecCccccCCCCCeE
Q 018235 217 ---SNQSPLVKF----------GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVE 280 (359)
Q Consensus 217 ---~~~~~~~~~----------~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~ 280 (359)
.....+..+ ..+.....++.|++....+|++|+.||.|++|+.++..... .......+|...|.
T Consensus 179 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~ 258 (388)
T d1erja_ 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258 (388)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred cccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEE
Confidence 000011111 11122333444444332367777777777777776532111 11123457899999
Q ss_pred EEEecCCCCCEEEEEeCCCcEEEEECCCCCC-----------ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-----------~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
+++|+|++. +|++|+.||.|++||++.... .......|...|++++|+|++.+|+++.. ++.|+
T Consensus 259 ~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~----dg~i~ 333 (388)
T d1erja_ 259 SVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----DRGVL 333 (388)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----TSEEE
T ss_pred EEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC----CCEEE
Confidence 999999998 999999999999999986521 23344678999999999999999998876 89999
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
+||..+++
T Consensus 334 vwd~~~~~ 341 (388)
T d1erja_ 334 FWDKKSGN 341 (388)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99998875
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=5.5e-22 Score=175.39 Aligned_cols=166 Identities=18% Similarity=0.256 Sum_probs=150.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|++|+|+|++ .+||||+.||+|+|||+.. .+.+.++.+|...|.+++|+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~---------------------~~~~~~~~~h~~~V~~~~~~ 68 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYET---------------------GDFERTLKGHTDSVQDISFD 68 (317)
T ss_dssp CEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTT---------------------CCCCEEECCCSSCEEEEEEC
T ss_pred EEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCcEEEEeee
Confidence 5677999999999999998 7999999999999999987 67888999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++. +++++..++.+.+|+... .... ..+.+|...+.++.|+|++. .+++++.|+.+++||++++ ..+..+..
T Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 141 (317)
T d1vyhc1 69 HSGK-LLASCSADMTIKLWDFQG-FECI---RTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG-YCVKTFTG 141 (317)
T ss_dssp TTSS-EEEEEETTSCCCEEETTS-SCEE---ECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred cccc-cccccccccccccccccc-cccc---cccccccccceeeeccCCCc-eEEeeccCcceeEeecccc-eeeeEEcc
Confidence 9998 999999999999999876 3333 45778999999999999998 9999999999999999998 77888899
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...+.+++|++++.+++.+.. ++.+++|+...+.
T Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~ 176 (317)
T d1vyhc1 142 HREWVRMVRPNQDGTLIASCSN----DQTVRVWVVATKE 176 (317)
T ss_dssp CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred CCCcceeeecccCCCEEEEEeC----CCeEEEEeeccce
Confidence 9999999999999999988766 8889999988764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.88 E-value=9.1e-22 Score=174.85 Aligned_cols=192 Identities=10% Similarity=0.177 Sum_probs=138.2
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--cccc-cc------------ccc-cCCCCC----
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAE-SE------------TIV-GQGAPQ---- 215 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~-~~------------~~~-~~~~~~---- 215 (359)
.+...+.+|.+.|++++|+|++ .+||||+.||+|++||+..... .+.. .. ... ...++.
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence 4567788999999999999998 7999999999999999875211 1100 00 000 000000
Q ss_pred ------C--------------------CCCCC--------cEEe-------cCCCCceEEEEeCCCCCCeEEEEcCCCcE
Q 018235 216 ------V--------------------SNQSP--------LVKF-------GGHKDEGYAIDWNPITTGRLVTGDCNSCI 254 (359)
Q Consensus 216 ------~--------------------~~~~~--------~~~~-------~~h~~~v~~l~~sp~~~~~l~sgs~dg~I 254 (359)
. ..... +..+ ......+.+++|+|++. +|++|+.||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i 160 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKV 160 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEE
T ss_pred ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 0 00000 0000 01223567889999987 99999999999
Q ss_pred EEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC--ceEEeecCCCCEEEEEEcCCC
Q 018235 255 YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRCW 332 (359)
Q Consensus 255 ~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~~~~~~h~~~V~~i~~s~~~ 332 (359)
++||++. .... ......|...|.+++|+|++. +|++++.|+.|++||+++... ....+..|...|++++|+|++
T Consensus 161 ~~~d~~~-~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 236 (299)
T d1nr0a2 161 HVYKLSG-ASVS--EVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 236 (299)
T ss_dssp EEEEEET-TEEE--EEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred ccccccc-cccc--ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999976 3322 123457899999999999998 999999999999999987621 223457799999999999999
Q ss_pred CeEEEEeeecccceEEEEEeCcCCc
Q 018235 333 LAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 333 ~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+++.+.. |+.|++|+..++.
T Consensus 237 ~~l~sgs~----dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 237 VRLATGSL----DNSVIVWNMNKPS 257 (299)
T ss_dssp SEEEEEET----TSCEEEEETTCTT
T ss_pred cceEEEcC----CCEEEEEECCCCC
Confidence 99998876 8899999988754
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3.8e-21 Score=173.99 Aligned_cols=169 Identities=10% Similarity=0.064 Sum_probs=127.0
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|+++.|+|.++.++++++.||.|++|++..... ......+.+|...|+++
T Consensus 150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~------------------~~~~~~~~~~~~~v~~v 211 (325)
T d1pgua1 150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF------------------SASDRTHHKQGSFVRDV 211 (325)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE------------------EEEECSSSCTTCCEEEE
T ss_pred ccceeeeecccccccccccccccceEEEeeccccccccccccccc------------------ceecccccCCCCccEEe
Confidence 344566789999999999999978899999999999999875210 01122245677789999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec---CCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS---PTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+|+|++..+|++|+.||.|++||+++ ++.+ ..+.+|...+..+.|+ |++. +|++++.|+.|+|||++++ ++
T Consensus 212 ~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~---~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~-~~ 285 (325)
T d1pgua1 212 EFSPDSGEFVITVGSDRKISCFDGKS-GEFL---KYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTS-KC 285 (325)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETTT-CCEE---EECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTT-EE
T ss_pred eeccccceeccccccccceeeeeecc-cccc---ccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCC-CE
Confidence 99998655899999999999999987 4444 5677777766555555 5677 9999999999999999987 77
Q ss_pred eEEeecCCCC--EE--EEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 313 LTSFKAHNAD--VN--VISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 313 ~~~~~~h~~~--V~--~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+..+..|... +. ++.|++++ .++.+.. |+.|++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~----dg~i~vwdl 325 (325)
T d1pgua1 286 VQKWTLDKQQLGNQQVGVVATGNG-RIISLSL----DGTLNFYEL 325 (325)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETT-EEEEEET----TSCEEEEET
T ss_pred EEEEEecCCcccCeEEEEEECCCC-EEEEEEC----CCEEEEEEC
Confidence 7777555543 33 34444443 4555544 899999985
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.3e-21 Score=178.09 Aligned_cols=152 Identities=15% Similarity=0.219 Sum_probs=117.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...++++.|+|++ +||||+.||+|+|||+....... ...+...+.+|...|.+|+|+|++.
T Consensus 182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~---------------~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 182 TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLY---------------NFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEE---------------EEECCC---CCCCCEEEEEECSSTT
T ss_pred CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccc---------------ccccccccccccceEEEcccccccc
Confidence 456779999999987 88999999999999998621110 0123345678999999999999998
Q ss_pred CeEEEEcCCCc---EEEEecCCCCccee----------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 243 GRLVTGDCNSC---IYLWEPASDATWNV----------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 243 ~~l~sgs~dg~---I~lwd~~~~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+|++|+.|++ |++||+.++ ..+. ....+.+|...|++|+|+|++. +|+||+.|++|+|||++++
T Consensus 245 -~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 245 -LLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp -EEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred -eeeeecCCCCcceeeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCC
Confidence 9999998875 899999873 2221 1133468999999999999998 9999999999999999998
Q ss_pred CCceEEeecCCCCEE----EEEEcCCCCeE
Q 018235 310 KSALTSFKAHNADVN----VISWNRCWLAV 335 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~----~i~~s~~~~~l 335 (359)
+++..+.+|...|. .++|++++..+
T Consensus 322 -~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 322 -ERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp -EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred -CEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 88888999976664 35666665543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=2.1e-20 Score=165.91 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=128.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...+.+++|+|++ .++++++.+|.|++||+... .........|...|.+++|+|++.
T Consensus 134 ~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~ 192 (299)
T d1nr0a2 134 PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGA--------------------SVSEVKTIVHPAEITSVAFSNNGA 192 (299)
T ss_dssp ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETT--------------------EEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccccccccccccc-cccccccccccccccccccc--------------------cccccccccccccccccccccccc
Confidence 355678899999988 79999999999999998762 111223457888999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-ceEEeec-CC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFKA-HN 320 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~~-h~ 320 (359)
+|++|+.|+.|++||+.+ +........+.+|...|++++|+|++. +|++|+.||.|+|||++++.. ++..... +.
T Consensus 193 -~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 269 (299)
T d1nr0a2 193 -FLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269 (299)
T ss_dssp -EEEEEETTSCEEEEEGGG-TTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred -cccccccccccccccccc-ccccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCC
Confidence 999999999999999976 333333456788999999999999998 999999999999999998632 2333333 44
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|+++.|. ++.+|+.+.. |+.|++|++.
T Consensus 270 ~~v~~~~~~-~~~~l~s~s~----D~~i~iWdl~ 298 (299)
T d1nr0a2 270 SSVNSVIWL-NETTIVSAGQ----DSNIKFWNVP 298 (299)
T ss_dssp SCEEEEEEE-ETTEEEEEET----TSCEEEEECC
T ss_pred CcEEEEEEC-CCCEEEEEeC----CCEEEEEecc
Confidence 567877665 4667776655 8999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=4.1e-20 Score=171.39 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=130.9
Q ss_pred cCCCceeeEEEeCCC----CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 163 AHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.+...++.+.+.+.. ..++++++.||.|++|++............... ..............+...+++++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~s 193 (393)
T d1sq9a_ 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS---PTLELQGTVESPMTPSQFATSVDIS 193 (393)
T ss_dssp GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC---CEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec---cceecccceecccCCCCcEEEEEEC
Confidence 356678888887764 267899999999999998652211100000000 0000000111123345568899999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcce---ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc---EEEEECCCCCCc
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH---IAIWDTRVGKSA 312 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~---I~iwD~r~~~~~ 312 (359)
|++ +||||+.||+|+|||+.+ ++.+ .....+.+|...|++|+|+|++. +|++|+.|++ |+|||++++ ..
T Consensus 194 ~dg--~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g-~~ 268 (393)
T d1sq9a_ 194 ERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG-ER 268 (393)
T ss_dssp TTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC-CE
T ss_pred CCC--EEEEEeCCCcEEEEeecc-cccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccc-ee
Confidence 985 899999999999999987 3322 12345678999999999999999 9999999875 999999987 55
Q ss_pred eEEe-------------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 LTSF-------------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ~~~~-------------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..+ .+|...|++|+|+|++++|+.+.. |+.|++||..+|+
T Consensus 269 ~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~----D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----DGKLRFWDVKTKE 322 (393)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTTE
T ss_pred eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC----CCEEEEEECCCCC
Confidence 5444 379999999999999999998876 9999999998875
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.5e-19 Score=159.97 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=134.8
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
......+.+|...+..+.+. + ..+++++.||.|++||+.. ..++..+.+|...+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~---------------------~~~~~~~~~~~~~v~~ 222 (342)
T d2ovrb2 167 ETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVET---------------------GNCIHTLTGHQSLTSG 222 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCCSCEEE
T ss_pred ceeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeeccc---------------------ceeeeEecccccceeE
Confidence 34456667788777766654 4 6899999999999999987 6778889999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+++++ . +|++|+.||.|++||+... +..........|...+.+++|+++ ++++|+.||+|+|||++++ +.+.
T Consensus 223 ~~~~~--~-~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg-~~i~ 294 (342)
T d2ovrb2 223 MELKD--N-ILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTG-EFIR 294 (342)
T ss_dssp EEEET--T-EEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTC-CEEE
T ss_pred EecCC--C-EEEEEcCCCEEEEEecccc-cccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCC-CEEE
Confidence 99876 3 9999999999999999873 333222334457788888888653 8999999999999999998 6666
Q ss_pred Ee-----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SF-----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~-----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ .+|...|++++|+|++.+++.+...+..+..|++||...
T Consensus 295 ~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 65 357888999999999999988877555566799999764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=4.3e-19 Score=156.43 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=120.0
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~ 241 (359)
.+...+. .+++.+..+++++..++.|++|++.. ......+ ..|...+.+++|+|++
T Consensus 118 ~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~s~~~ 174 (287)
T d1pgua2 118 RLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSD---------------------LEVSFDLKTPLRAKPSYISISPSE 174 (287)
T ss_dssp ECSSCEE--EEEECSSEEEEEETTTSCEEEEETTE---------------------EEEEEECSSCCSSCEEEEEECTTS
T ss_pred cccceee--eeeccCcceeeeccccceeeeeeccc---------------------cceeeeeeeccCCceeEEEeccCc
Confidence 3444444 44555634444444456899999876 1222222 3467789999999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC---------CCEEEEEeCCCcEEEEECCCCCCc
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---------PDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---------~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
. +|++|+.||.|++||+.+ +... ...+.+|...|.+++|+|.+ ..+|++|+.|++|+|||++.+...
T Consensus 175 ~-~l~~g~~dg~i~i~d~~~-~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~ 250 (287)
T d1pgua2 175 T-YIAAGDVMGKILLYDLQS-REVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250 (287)
T ss_dssp S-EEEEEETTSCEEEEETTT-TEEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred c-ccccccccccccceeecc-cccc--cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence 8 999999999999999987 3332 14567899999999999864 238999999999999999886456
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+..+.+|...|++++|+|++. ++++.. |+.|++|++
T Consensus 251 ~~~~~~h~~~V~~v~~~~~~~-l~s~g~----D~~v~iW~i 286 (287)
T d1pgua2 251 IKALNAHKDGVNNLLWETPST-LVSSGA----DACIKRWNV 286 (287)
T ss_dssp EEETTSSTTCEEEEEEEETTE-EEEEET----TSCEEEEEE
T ss_pred EEEeCCCCCCeEEEEECCCCE-EEEEEC----CCeEEEEEE
Confidence 666789999999999999875 444444 899999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=5.1e-19 Score=157.44 Aligned_cols=214 Identities=13% Similarity=0.091 Sum_probs=133.6
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
..+++|.|+. .+|++|+ .++.|.||++..-
T Consensus 14 I~~l~fsp~~-----------~~L~s~s-----~Dg~v~iwd~~~~---------------------------------- 43 (342)
T d1yfqa_ 14 ISDIKIIPSK-----------SLLLITS-----WDGSLTVYKFDIQ---------------------------------- 43 (342)
T ss_dssp EEEEEEEGGG-----------TEEEEEE-----TTSEEEEEEEETT----------------------------------
T ss_pred EEEEEEeCCC-----------CEEEEEE-----CCCeEEEEEccCC----------------------------------
Confidence 4578888985 4788887 4789999998410
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCC-CCCCCcEEecC
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV-SNQSPLVKFGG 227 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 227 (359)
+.........+|.++|++++|+|.+..+|++|+.||.|++|++..................... ..........+
T Consensus 44 ----~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (342)
T d1yfqa_ 44 ----AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119 (342)
T ss_dssp ----TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE
T ss_pred ----CcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccc
Confidence 1222334556899999999999987689999999999999999763221111000000000000 00000000000
Q ss_pred CCCce------------EE---------------EEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-------------
Q 018235 228 HKDEG------------YA---------------IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------- 267 (359)
Q Consensus 228 h~~~v------------~~---------------l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------- 267 (359)
....+ .. +.+.+.+. .+++++.|+.|++|+++.......
T Consensus 120 ~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (342)
T d1yfqa_ 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198 (342)
T ss_dssp TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred cccccceeeccccccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceee
Confidence 00000 00 12233444 788888999999999864311000
Q ss_pred --------------------------------------------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 268 --------------------------------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 268 --------------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
......+|...|++|+|+|++. +||||+.||.|+|
T Consensus 199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~v 277 (342)
T d1yfqa_ 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISC 277 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEE
T ss_pred eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEE
Confidence 0001124566789999999999 9999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
||++++ +.+..+..+ ..+.+++|+|++.+++.+..
T Consensus 278 WD~~~~-~~l~~~~~~-~~~~~~~~s~~~~~l~~a~s 312 (342)
T d1yfqa_ 278 WNLQTR-KKIKNFAKF-NEDSVVKIACSDNILCLATS 312 (342)
T ss_dssp EETTTT-EEEEECCCC-SSSEEEEEEECSSEEEEEEE
T ss_pred EECCCC-cEEEEecCC-CCCEEEEEEeCCCEEEEEEc
Confidence 999997 666666433 34566788888998888765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=7.6e-18 Score=150.94 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~ 231 (359)
...+..++.+|.+.|++++|+|.+ ++++++.||.|++|++..... ......+ ...
T Consensus 42 ~~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~~---------------------~~~~~~~~~~~~ 98 (355)
T d1nexb2 42 NKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCC---------------------THVFEGHNSTVR 98 (355)
T ss_dssp TTEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTEE---------------------EEEECCCSSCEE
T ss_pred CCcEEEEEECCCCCEEEEEEcCCC--EEEEEeccccccccccccccc---------------------cccccccccccc
Confidence 445667788999999999999854 899999999999999887321 1111111 111
Q ss_pred eEEEEeCCCCC--------------------------------------------------------------CeEEEEc
Q 018235 232 GYAIDWNPITT--------------------------------------------------------------GRLVTGD 249 (359)
Q Consensus 232 v~~l~~sp~~~--------------------------------------------------------------~~l~sgs 249 (359)
.....+++++. .+++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (355)
T d1nexb2 99 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178 (355)
T ss_dssp EEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeec
Confidence 22223333333 1455555
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
.|+.|++||++. ++.. ..+.++...+.++.|+|.+. .+++++.|+.|++||++++ ..+..+.+|...|++++|+
T Consensus 179 ~d~~i~~~d~~~-~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 179 YDNTLIVWDVAQ-MKCL---YILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp TTSCEEEEETTT-TEEE---EEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEEC
T ss_pred ccceeeeeeccc-ccce---eeeeccccccccccccccce-eeecccccceEEeeecccc-ccccccccccccccccccc
Confidence 555555555544 2222 34556778889999999998 9999999999999999998 7788889999999999997
Q ss_pred CCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ .+++.+.. ++.|++||.+.+.
T Consensus 253 ~--~~l~~~~~----dg~i~iwd~~~~~ 274 (355)
T d1nexb2 253 D--KFLVSAAA----DGSIRGWDANDYS 274 (355)
T ss_dssp S--SEEEEECT----TSEEEEEETTTCC
T ss_pred c--ceeeeeec----ccccccccccccc
Confidence 5 56666655 8889999987654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=3.6e-18 Score=153.06 Aligned_cols=159 Identities=14% Similarity=0.211 Sum_probs=123.8
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.......++...+.++.++|.+ .++++++.||.|++||+.. ..++..+.+|...|.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~---------------------~~~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 192 KCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLEN---------------------GELMYTLQGHTALVGLL 249 (355)
T ss_dssp EEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCCCEE
T ss_pred cceeeeeccccccccccccccc-eeeecccccceEEeeeccc---------------------ccccccccccccccccc
Confidence 3445666788999999999998 7889999999999999987 67788899999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE-ecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ-WSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~-~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+|++ . +|++|+.||+|++||+++. . ..+..|...+..+. +++++. ++++|+ |+.|+|||++++ +.+.
T Consensus 250 ~~~~--~-~l~~~~~dg~i~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~~i~vwd~~tg-~~~~ 317 (355)
T d1nexb2 250 RLSD--K-FLVSAAADGSIRGWDANDY-S-----RKFSYHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG-KLVH 317 (355)
T ss_dssp EECS--S-EEEEECTTSEEEEEETTTC-C-----EEEEEECTTCCCCCEEEECSS-EEEEEE-TTEEEEEETTTC-CBCC
T ss_pred cccc--c-eeeeeeccccccccccccc-c-----eecccccCCceEEEEEcCCCC-EEEEEe-CCEEEEEECCCC-CEEE
Confidence 9985 3 8999999999999999873 2 33556666666665 455655 776665 899999999997 5554
Q ss_pred -EeecCCCCEEEEEEcCCCCeEEEEeeecccceE--EEEEeC
Q 018235 315 -SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL--FMILDC 353 (359)
Q Consensus 315 -~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~--i~iwd~ 353 (359)
.+.+|...|++++|+|+. +++.+.. |+. |.+||.
T Consensus 318 ~~~~~~~~~V~~v~~~~~~-~~~~~s~----dg~~~l~~~df 354 (355)
T d1nexb2 318 ANILKDADQIWSVNFKGKT-LVAAVEK----DGQSFLEILDF 354 (355)
T ss_dssp SCTTTTCSEEEEEEEETTE-EEEEEES----SSCEEEEEEEC
T ss_pred EEecCCCCCEEEEEEcCCe-EEEEEEC----CCcEEEEEEeC
Confidence 457899999999999863 4444443 655 455553
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-17 Score=148.58 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=126.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|.+ ++++++ .+||||+.||+|+|||+.. .+++.++.+|...|++++|+
T Consensus 10 ~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~~~~h~~~V~~v~~~ 66 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGHTGGVWSSQMR 66 (342)
T ss_dssp EEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTT---------------------CCEEEECCCCSSCEEEEEEE
T ss_pred EEECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCCEEEEEeC
Confidence 456699999865 355566 7899999999999999987 67889999999999999998
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcce----------------------------------------------------
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWN---------------------------------------------------- 266 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~---------------------------------------------------- 266 (359)
++ +|++|+.|+++++|+........
T Consensus 67 ~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 67 DN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp TT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred CC---ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence 73 89999999999999876420000
Q ss_pred ------------------------ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 267 ------------------------VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 267 ------------------------~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.....+.+|...+..+ ++++. .|++|+.||.|++||++.. .++..+..|...
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~ 219 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGI-HVVSGSLDTSIRVWDVETG-NCIHTLTGHQSL 219 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSS-EEEEEETTSCEEEEETTTC-CEEEEECCCCSC
T ss_pred ccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCC-EEEEEeCCCeEEEeecccc-eeeeEecccccc
Confidence 0001122344444444 44556 8999999999999999997 778888999999
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+++|++ .+++.+.. ++.|++|+....+
T Consensus 220 v~~~~~~~--~~l~s~s~----d~~i~iwd~~~~~ 248 (342)
T d2ovrb2 220 TSGMELKD--NILVSGNA----DSTVKIWDIKTGQ 248 (342)
T ss_dssp EEEEEEET--TEEEEEET----TSCEEEEETTTCC
T ss_pred eeEEecCC--CEEEEEcC----CCEEEEEeccccc
Confidence 99998875 47777665 8899999987654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=4.1e-18 Score=150.09 Aligned_cols=119 Identities=18% Similarity=0.333 Sum_probs=99.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..|.+.|++++|+|++ .+|++++.+|.|++||+... ......+.+|...|.+++|+|.+
T Consensus 159 ~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~--------------------~~~~~~~~~h~~~v~~~~~~p~~ 217 (287)
T d1pgua2 159 TPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSR--------------------EVKTSRWAFRTSKINAISWKPAE 217 (287)
T ss_dssp SCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT--------------------EEEECCSCCCSSCEEEEEECCCC
T ss_pred eccCCceeEEEeccCc-cccccccccccccceeeccc--------------------ccccccccccccccceeeecccc
Confidence 4588999999999999 79999999999999999862 11223467899999999999854
Q ss_pred C---------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 242 T---------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 242 ~---------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
. .+|+||+.|++|++|+++.+.... ..+.+|...|++++|+|++ .|+|++.|++|+||++
T Consensus 218 ~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~---~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 286 (287)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCE---EETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred cccccccCCCCeeEeecCCCeEEEEECCCCCeEE---EEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence 2 389999999999999997755444 5677999999999999976 5889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.8e-17 Score=143.08 Aligned_cols=162 Identities=15% Similarity=0.280 Sum_probs=124.5
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|...|+|+.+ ++ ++||||+.||+|+|||+.. .+++.++.+|...|++|+|+
T Consensus 9 ~~~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~l~~H~~~V~~v~~~ 64 (293)
T d1p22a2 9 HCRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT---------------------LECKRILTGHTGSVLCLQYD 64 (293)
T ss_dssp ECCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS---------------------CCEEEEECCCSSCEEEEECC
T ss_pred eccCCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEeeeecc
Confidence 344578889998765 56 7999999999999999987 67889999999999999985
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcce---------------------------------------ecCccccCCCCCe
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWN---------------------------------------VDPNPFIGHSASV 279 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~---------------------------------------~~~~~~~~h~~~V 279 (359)
+. +|+||+.||.|++|++..+.... .....+..|...|
T Consensus 65 --~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 65 --ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp --SS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred --cc-eeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccc
Confidence 44 99999999999999987631100 0011223566777
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+.+.+. .+++++.|+.|++||+++. +++..+.+|...|..+.++ +..++.+.. ++.|++|+.+++.
T Consensus 142 ~~~~~~~~---~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~ 209 (293)
T d1p22a2 142 NVVDFDDK---YIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGA 209 (293)
T ss_dssp EEEEEETT---EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCC
T ss_pred ccceeccc---ccccccCCCceeeecCCCC-cEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccce
Confidence 77666543 6788899999999999987 7777888888888888876 446666655 7889999887654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=6.6e-18 Score=150.13 Aligned_cols=174 Identities=9% Similarity=0.041 Sum_probs=126.2
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
++....+|...|++|+|+|++ .+||+++.||+|+|||+..... ...+....+|..+|.+++
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~------------------~~~~~~~~~h~~~V~~v~ 63 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCN 63 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCc------------------ceEEEEecCCCCCEEEEE
Confidence 334556899999999999998 7999999999999999976210 112233447999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE-
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS- 315 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~- 315 (359)
|+|.+..+|++|+.||.|++|++....... .....+........+.+... .+++++.++++++||++........
T Consensus 64 f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EeCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc-cccccccccccceeeccccccceeee
Confidence 999876589999999999999998743322 22223334444555555555 9999999999999999875222211
Q ss_pred --eecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 --FKAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 --~~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...+ ......+.+.+.+..++.+.. ++.+++|+...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~ 181 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMN----NSQVQWFRLPLCE 181 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECSSEEEEEES----TTEEEEEESSCCT
T ss_pred cccccccccceeeeeeeeccCCceeeecC----CCcEEEEecccCc
Confidence 2222 334556677888888888776 8899999987654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=1.6e-17 Score=150.00 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=128.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
++|.+.|.+++|+|++..+++++..+| .|++||+.. .....+..|...+.+++|+|+
T Consensus 39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~----------------------~~~~~~~~~~~~v~~~~~spd 96 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT----------------------GKAEKFEENLGNVFAMGVDRN 96 (360)
T ss_dssp CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT----------------------CCEEECCCCCCSEEEEEECTT
T ss_pred ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC----------------------CcEEEeeCCCceEEeeeeccc
Confidence 489999999999999944444455554 789999976 345567889999999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe----------CCCcEEEEECCCCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS----------VDGHIAIWDTRVGK 310 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s----------~Dg~I~iwD~r~~~ 310 (359)
+. +|++++.++.+++|+... +... ..+..|...+.+++|+|++. +||.++ .++.+++||+.++
T Consensus 97 g~-~l~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~- 169 (360)
T d1k32a3 97 GK-FAVVANDRFEIMTVDLET-GKPT---VIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGR- 169 (360)
T ss_dssp SS-EEEEEETTSEEEEEETTT-CCEE---EEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTT-
T ss_pred cc-ccceeccccccccccccc-ccee---eeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccC-
Confidence 98 999999999999999977 4433 45677888999999999999 776543 4557999999985
Q ss_pred CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
....+..|...+.++.|+|+|+.|++... ++.+.+|+...
T Consensus 170 -~~~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 170 -KIFAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp -EEEECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred -ceeeecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 44555667888999999999999988765 66677887654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.9e-16 Score=133.35 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=130.7
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccc-------------cc-CCCC------
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI-------------VG-QGAP------ 214 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~-------------~~-~~~~------ 214 (359)
..+...+.+|.+.|+++.|. + .+|+||+.||.|++|++............. .. ....
T Consensus 45 ~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (293)
T d1p22a2 45 LECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121 (293)
T ss_dssp CCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred CcEEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEee
Confidence 34556777999999999874 3 789999999999999987642211110000 00 0000
Q ss_pred --CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE
Q 018235 215 --QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 215 --~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
..........+..|...+..+.+.+. .+++++.|+.|++||+++ .+.+ ..+.+|...|..+.+++ . .+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~-~~~~---~~~~~~~~~v~~~~~~~--~-~l 191 (293)
T d1p22a2 122 MASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTST-CEFV---RTLNGHKRGIACLQYRD--R-LV 191 (293)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTT-CCEE---EEEECCSSCEEEEEEET--T-EE
T ss_pred ccccccccccccccccccccccceeccc---ccccccCCCceeeecCCC-CcEE---EEEcccccccccccCCC--C-eE
Confidence 00112234456778888888888653 788899999999999987 4444 56788989998888864 3 89
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++++.||.|+|||+++. ..+..+.+|...+.++ .+++.+++.+.. ++.|++|+...
T Consensus 192 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~--~~~~~~l~sg~~----dg~i~iwd~~~ 247 (293)
T d1p22a2 192 VSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCI--RFDNKRIVSGAY----DGKIKVWDLVA 247 (293)
T ss_dssp EEEETTSCEEEEETTTC-CEEEEECCCSSCEEEE--ECCSSEEEEEET----TSCEEEEEHHH
T ss_pred EEecCCCEEEEEecccc-eeeeeecccceeeeec--cccceEEEEEcC----CCEEEEEECCC
Confidence 99999999999999997 7777788888888764 556777877765 88999998643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=3.6e-16 Score=140.93 Aligned_cols=154 Identities=8% Similarity=-0.014 Sum_probs=124.6
Q ss_pred EEEeC-CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 171 IRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 171 i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
-.|+| +| +++|+++ .|.|++||+.. ..+..+ +|...+.+++|+|+++ +|++++
T Consensus 8 ~~fSP~dG-~~~a~~~-~g~v~v~d~~~----------------------~~~~~~-~~~~~v~~~~~spDg~-~l~~~~ 61 (360)
T d1k32a3 8 EDFSPLDG-DLIAFVS-RGQAFIQDVSG----------------------TYVLKV-PEPLRIRYVRRGGDTK-VAFIHG 61 (360)
T ss_dssp EEEEECGG-GCEEEEE-TTEEEEECTTS----------------------SBEEEC-SCCSCEEEEEECSSSE-EEEEEE
T ss_pred ccccCCCC-CEEEEEE-CCeEEEEECCC----------------------CcEEEc-cCCCCEEEEEECCCCC-EEEEEE
Confidence 46999 77 7888866 58999999876 223333 7899999999999998 776655
Q ss_pred CCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEE
Q 018235 250 CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327 (359)
Q Consensus 250 ~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~ 327 (359)
.+. .|++||... +.. ..+..|...|.+++|+|++. .|++++.++.+++|++..+ .....+..|...+.+++
T Consensus 62 ~~~g~~v~v~d~~~-~~~----~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 134 (360)
T d1k32a3 62 TREGDFLGIYDYRT-GKA----EKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFT 134 (360)
T ss_dssp ETTEEEEEEEETTT-CCE----EECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEE
T ss_pred cCCCCEEEEEECCC-CcE----EEeeCCCceEEeeeeccccc-ccceecccccccccccccc-ceeeeeecccccccchh
Confidence 443 799999976 443 45678999999999999999 9999999999999999987 66677788999999999
Q ss_pred EcCCCCeEEEEeee------cccceEEEEEeCcCCc
Q 018235 328 WNRCWLAVCWHLEV------MMEHFLFMILDCSRGE 357 (359)
Q Consensus 328 ~s~~~~~l~~~~~~------~~~d~~i~iwd~~~g~ 357 (359)
|+|+|++|++.... ...+..+++|+..+++
T Consensus 135 ~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 135 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred hccceeeeeeeccccccceeeccccceeeeccccCc
Confidence 99999999876533 2335679999988765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.66 E-value=9.4e-16 Score=143.30 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=65.2
Q ss_pred ccCCCCCeEEEEecCCCCCEEE-------EEeCCCcEEEEECCCCCCceEEe---------ecCCCCEEEEEEcCCCCeE
Q 018235 272 FIGHSASVEDLQWSPTEPDVFA-------SCSVDGHIAIWDTRVGKSALTSF---------KAHNADVNVISWNRCWLAV 335 (359)
Q Consensus 272 ~~~h~~~V~~v~~sp~~~~~la-------s~s~Dg~I~iwD~r~~~~~~~~~---------~~h~~~V~~i~~s~~~~~l 335 (359)
+.+|...+..++|+|++. .|+ +++.+++|+|||++++ ....++ ..|...|..++|+|+|+.+
T Consensus 299 l~g~~~~v~~v~~sPdg~-~l~v~~~~~~s~~~~~tv~vwd~~t~-~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i 376 (426)
T d1hzua2 299 LQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNL-DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 376 (426)
T ss_dssp EECSSSCCCCEECCTTCS-EEEECCTTCSSHHHHTCEEEEETTCT-TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred EecCCCceeEEEcCCCCc-eEEEeecCCCCcccCCEEEEEECCCC-CcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence 457788899999999999 666 4566899999999987 443333 2456679999999999987
Q ss_pred EEEee-ecccceEEEEEeCcCCcc
Q 018235 336 CWHLE-VMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 336 ~~~~~-~~~~d~~i~iwd~~~g~v 358 (359)
+.++- ....++.|+|||..++++
T Consensus 377 ~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 377 WFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp EEEECCCTTSCCEEEEEETTTTEE
T ss_pred EEEEecCCCCCCeEEEEECCCCeE
Confidence 65542 234578899999998764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.54 E-value=1.9e-12 Score=113.03 Aligned_cols=242 Identities=12% Similarity=0.066 Sum_probs=136.0
Q ss_pred eeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCC
Q 018235 49 ELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSN 128 (359)
Q Consensus 49 ~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~ 128 (359)
.-.+|..-.+.+.+..+.--...+.+-||+. ..++++. ..+.|.++++.
T Consensus 14 v~v~D~~t~~~~~~i~~g~~p~~va~spdG~----------~l~v~~~-----~~~~i~v~d~~---------------- 62 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGT----------KVYVANA-----HSNDVSIIDTA---------------- 62 (301)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSS----------EEEEEEG-----GGTEEEEEETT----------------
T ss_pred EEEEECCCCeEEEEEECCCCceEEEEeCCCC----------EEEEEEC-----CCCEEEEEECC----------------
Confidence 3334444445666666654445777888851 2334554 35689999873
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc--cccc
Q 018235 129 DDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL--AESE 206 (359)
Q Consensus 129 ~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~--~~~~ 206 (359)
.......+..| ..+..+.+++++..+++++..++.+.+|+........ ....
T Consensus 63 -------------------------t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (301)
T d1l0qa2 63 -------------------------TNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116 (301)
T ss_dssp -------------------------TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred -------------------------CCceeeeeecc-ccccccccccccccccccccccceeeecccccceeeeeccccc
Confidence 33343444444 4568899999997788888899999999987621100 0000
Q ss_pred c--cccCCCCCC------CCCCCcEEe----------cCCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEecCCCCccee
Q 018235 207 T--IVGQGAPQV------SNQSPLVKF----------GGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNV 267 (359)
Q Consensus 207 ~--~~~~~~~~~------~~~~~~~~~----------~~h~~~v~~l~~sp~~~~~l~sgs~-dg~I~lwd~~~~~~~~~ 267 (359)
. ......+.. .....+..+ ..+......+.|+|++. .+++++. .+.+.+|+... ....
T Consensus 117 ~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~- 193 (301)
T d1l0qa2 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT-KVYVANFDSMSISVIDTVT-NSVI- 193 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS-EEEEEETTTTEEEEEETTT-TEEE-
T ss_pred cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccc-ceeeecccccccccccccc-eeee-
Confidence 0 000000000 000000000 01112234455555554 3333322 23344444332 1111
Q ss_pred cCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccc
Q 018235 268 DPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEH 345 (359)
Q Consensus 268 ~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d 345 (359)
. ...+...+..+.|++++..+++++. .++.|++||+.++ +.+..+.. ...+..++|+|+|++|+.... .+
T Consensus 194 --~-~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~-~~~~~~va~spdg~~l~va~~---~~ 265 (301)
T d1l0qa2 194 --D-TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPV-GPDPAGIAVTPDGKKVYVALS---FC 265 (301)
T ss_dssp --E-EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEEC-CSSEEEEEECTTSSEEEEEET---TT
T ss_pred --e-cccccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcC-CCCEEEEEEeCCCCEEEEEEC---CC
Confidence 1 1123355678899999985544443 3578999999987 66666654 456899999999998765544 37
Q ss_pred eEEEEEeCcCCcc
Q 018235 346 FLFMILDCSRGEI 358 (359)
Q Consensus 346 ~~i~iwd~~~g~v 358 (359)
+.|.+||..++++
T Consensus 266 ~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 266 NTVSVIDTATNTI 278 (301)
T ss_dssp TEEEEEETTTTEE
T ss_pred CeEEEEECCCCeE
Confidence 8999999998864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=2.8e-13 Score=126.72 Aligned_cols=179 Identities=8% Similarity=-0.059 Sum_probs=125.2
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+..| ..+..++|+|+| +++++++.||.|++||+....... ...+....+|...+++.
T Consensus 53 ~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~----------------~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 53 EIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTT----------------VAEIKIGSEARSIETSK 114 (432)
T ss_dssp CEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCE----------------EEEEECCSEEEEEEECC
T ss_pred cEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceE----------------EEEEecCCCCCCeEEec
Confidence 344444445 469999999999 788888999999999997621000 01112223455556667
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceec--------CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVD--------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.|+|+++.++++++.+++|++||..+ ++.+.. ......+......+.++|++..++++...++.|.+||..
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCcc-ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence 78899984458899999999999987 333210 001123456678899999999677888899999999998
Q ss_pred CCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. +..... ..+...+..+.|+|+|++++..... .+.+.+++...+.
T Consensus 194 ~~-~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d~~~~~ 240 (432)
T d1qksa2 194 DL-NNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGK 240 (432)
T ss_dssp CS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTE
T ss_pred CC-CcceEEEEcccCccccceECCCCCEEEEeccc---cceEEEeecccce
Confidence 76 332222 2456678999999999988877653 6678888877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=1.5e-12 Score=115.46 Aligned_cols=182 Identities=8% Similarity=-0.098 Sum_probs=114.6
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc--ccccc--------cccCCCCC------------------
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL--AESET--------IVGQGAPQ------------------ 215 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~--~~~~~--------~~~~~~~~------------------ 215 (359)
+...+..++|+|+|..++++++.++.|.+||+....... ..... ......+.
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 446688999999996666888899999999997632110 00000 00000000
Q ss_pred ----------CCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------------------
Q 018235 216 ----------VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------------ 267 (359)
Q Consensus 216 ----------~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------------ 267 (359)
.........+. +...+.+++|+|++. ++++++. .+.+||+.+......
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred ccccceeeccccCCeEEEecc-ccCCceEEEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcce
Confidence 01112222333 234577899999998 8888764 467788764210000
Q ss_pred --------------------------------------------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 268 --------------------------------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 268 --------------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
....+..+...+..+.++|++. +++.+ ++.|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v 264 (337)
T d1pbyb_ 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLES 264 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEE
T ss_pred eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEE
Confidence 0001112344555667777776 55544 588999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
||+.++ +.+..+. +...+.+++|+|+|++|+.+.. ++.|++||..+++.
T Consensus 265 ~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~----~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 265 FDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGA----LGDLAAYDAETLEK 313 (337)
T ss_dssp EETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESB----SSEEEEEETTTCCE
T ss_pred EECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEeC----CCcEEEEECCCCcE
Confidence 999997 6666554 5667899999999999988765 78899999988763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=1.5e-13 Score=128.64 Aligned_cols=151 Identities=7% Similarity=-0.094 Sum_probs=116.8
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.++++.+.+|+|.|||... .+.+..+..|. .+++++|||+|+ +|++++.||+|++||
T Consensus 33 ~~~v~~~d~g~v~v~D~~t---------------------~~v~~~~~~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d 89 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGST---------------------YEIKTVLDTGY-AVHISRLSASGR-YLFVIGRDGKVNMID 89 (432)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CCEEEEEECSS-CEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEcCCCCEEEEE
Confidence 4568999999999999987 67788887764 689999999999 999999999999999
Q ss_pred cCCCCcce-ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec-----------CCCCEEEE
Q 018235 259 PASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-----------HNADVNVI 326 (359)
Q Consensus 259 ~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-----------h~~~V~~i 326 (359)
+.+..... ..+....+|...+.++.|+|+|+.++++++.+++|+|||..++ +++..+.. +......+
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEE
Confidence 98743221 1112234566677777889999967789999999999999987 66655533 34556778
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++|++..+++.... .+.+.+|+...+
T Consensus 169 ~~s~dg~~~~vs~~~---~~~i~~~d~~~~ 195 (432)
T d1qksa2 169 LASHYRPEFIVNVKE---TGKILLVDYTDL 195 (432)
T ss_dssp EECSSSSEEEEEETT---TTEEEEEETTCS
T ss_pred EECCCCCEEEEEEcc---CCeEEEEEccCC
Confidence 999999988777642 566777776543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.49 E-value=4.8e-12 Score=110.45 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=126.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+.+.+..++|+|++..++++++.++.|++||+.. ...+..+..|. ...++.|++
T Consensus 26 ~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---------------------~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 26 ATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECT
T ss_pred EEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---------------------Cceeeeeeccc-ccccccccc
Confidence 34456667889999999966778888999999999987 45667777665 468999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
++...++++..++.+.+|+... +... ..+ .+...+.++.|+|++..+++++..++.+.+|+..+. ..+..+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 156 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTS-NTVA---GTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVS-V 156 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTT-TEEE---EEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-C
T ss_pred ccccccccccccceeeeccccc-ceee---eec-cccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecc-c
Confidence 9986677788888999999976 4433 233 355678899999999977788888999999999987 5555554 4
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
...+..+.|+|++..++..... ...+.+|.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 190 (301)
T d1l0qa2 157 GRSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTN 190 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT
T ss_pred CCCceEEEeeccccceeeeccc---ccccccccccce
Confidence 4558899999999988776542 455666665543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.42 E-value=1.4e-12 Score=121.33 Aligned_cols=150 Identities=9% Similarity=-0.043 Sum_probs=110.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.++++.+++|+|+|||+.+ .+.+.++..|. .+++++|||+|+ +|++++.|++|++||
T Consensus 33 ~~~V~~~~dg~v~vwD~~t---------------------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd 89 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDS---------------------KKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMID 89 (426)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEE
Confidence 4568889999999999987 67788888775 589999999999 999999999999999
Q ss_pred cCCCCcce-ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-----------CCCEEEE
Q 018235 259 PASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-----------NADVNVI 326 (359)
Q Consensus 259 ~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-----------~~~V~~i 326 (359)
+.+..... .......+|...+.++.|+|+|+.+++++..++++++||..+. .++..+..| ......+
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (426)
T d1hzua2 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAI 168 (426)
T ss_dssp TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEE
Confidence 98743211 1112334567777888999999966777889999999999987 555554433 3345667
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+++++..+++.... .+.+.+++...
T Consensus 169 ~~s~d~~~~~~~~~~---~~~i~~~~~~~ 194 (426)
T d1hzua2 169 IASHEHPEFIVNVKE---TGKVLLVNYKD 194 (426)
T ss_dssp EECSSSSEEEEEETT---TTEEEEEECSS
T ss_pred EECCCCCEEEEecCC---CCeEEEEEecc
Confidence 777888777766542 34455554443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.40 E-value=2e-11 Score=108.36 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=57.1
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|...+..+.++|++. .++++. ++.|++||+.++ +.+..+. +...+.+++|+|+|+.++.+.. ++.|++||..
T Consensus 250 ~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~-~~~~~~~-~~~~~~~va~s~DG~~l~v~~~----d~~v~v~D~~ 321 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQR-KLIKAAN-LDHTYYCVAFDKKGDKLYLGGT----FNDLAVFNPD 321 (346)
T ss_dssp CSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECSSSSCEEEESB----SSEEEEEETT
T ss_pred ccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCC-cEEEEEc-CCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECc
Confidence 445566777888877 444444 357999999987 5555554 4557999999999999988765 7889999999
Q ss_pred CCc
Q 018235 355 RGE 357 (359)
Q Consensus 355 ~g~ 357 (359)
+++
T Consensus 322 t~~ 324 (346)
T d1jmxb_ 322 TLE 324 (346)
T ss_dssp TTE
T ss_pred cCC
Confidence 876
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=9.8e-11 Score=103.54 Aligned_cols=171 Identities=6% Similarity=-0.012 Sum_probs=116.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC-CcEEecCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS-PLVKFGGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l 235 (359)
...+.+.|.+.+..|+|+|+|..+++++..++.|++|++.... .. .+.....+......+
T Consensus 28 ~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~-------------------~~~~~~~~~~~~~~p~~l 88 (333)
T d1ri6a_ 28 TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------------------GALTFAAESALPGSLTHI 88 (333)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------------------CCEEEEEEEECSSCCSEE
T ss_pred EEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC-------------------CcEEEeeecccCCCceEE
Confidence 3366778999999999999996666777789999999987621 11 111112233456789
Q ss_pred EeCCCCCCeEEEEc-CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 236 DWNPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 236 ~~sp~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+|+|+++ +|++++ .++.|.+|+........ ......+...+.++.++|++..++.....+..|.+|+.........
T Consensus 89 ~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 89 STDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVG--VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp EECTTSS-EEEEEETTTTEEEEEEEETTEEEE--EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEcCCCC-EEeecccCCCceeeecccccccee--cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 9999998 666665 57789999876532211 1334456777889999999995555555677899999887522211
Q ss_pred E-----eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 315 S-----FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 315 ~-----~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
. ..........+.|++++.++.+.... .....+|+
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~ 205 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWE 205 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEe
Confidence 1 12345567899999999988766542 33445554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=8.8e-12 Score=110.51 Aligned_cols=152 Identities=10% Similarity=0.018 Sum_probs=105.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE-EEEcCCCcEEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL-VTGDCNSCIYLW 257 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-~sgs~dg~I~lw 257 (359)
.++++++.+++|++|++.... ...+.....|...+.+|+|||+++ +| +++..|+.|.+|
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~-------------------~l~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~ 64 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEG-------------------ALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAY 64 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-------------------CEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCC-------------------CeEEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEE
Confidence 467888999999999997621 111222335778899999999998 55 666678999999
Q ss_pred ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc--eEEeecCCCCEEEEEEcCCCCeE
Q 018235 258 EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA--LTSFKAHNADVNVISWNRCWLAV 335 (359)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~--~~~~~~h~~~V~~i~~s~~~~~l 335 (359)
++........ ......+...+..++|+|+++.+++++..++.|.+|+.... .. ......+...+.++.++|++.++
T Consensus 65 ~i~~~~~~~~-~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 65 RIAPDDGALT-FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp EECTTTCCEE-EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred EEeCCCCcEE-EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc-cceecccccCCCccceEEEeeecceee
Confidence 9976332211 11222344567789999999944444456889999987765 22 22335567778899999999988
Q ss_pred EEEeeecccceEEEEEeCcC
Q 018235 336 CWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 336 ~~~~~~~~~d~~i~iwd~~~ 355 (359)
++.... ...+.+|+...
T Consensus 143 ~~~~~~---~~~i~~~~~~~ 159 (333)
T d1ri6a_ 143 WVPALK---QDRICLFTVSD 159 (333)
T ss_dssp EEEEGG---GTEEEEEEECT
T ss_pred eccccc---cceeeEEEecc
Confidence 877653 55677777554
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=4.4e-11 Score=105.66 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=106.4
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCceEEEEeCCCCCCeEEEEcCCCcEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDEGYAIDWNPITTGRLVTGDCNSCIYL 256 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~sgs~dg~I~l 256 (359)
.++++++.|++|+|||+.. .+.+.++..+ ...+.+++|+|+++.++++++.++.|.+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s---------------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v 60 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK---------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEcCCCEEEEEECCC---------------------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEE
Confidence 5799999999999999987 4556666543 3467799999999834478888999999
Q ss_pred EecCCCCcceecCccccCC-----CCCeEEEEecCCCCCEEEEEe------------CCCcEEEEECCCCCCceEEeecC
Q 018235 257 WEPASDATWNVDPNPFIGH-----SASVEDLQWSPTEPDVFASCS------------VDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~~las~s------------~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
||+.+ ++.+ ..+..+ ...+..++|+|++. .+++++ .+..+.+||..++ ..+..+. +
T Consensus 61 ~D~~t-~~~~---~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~-~ 133 (337)
T d1pbyb_ 61 IDLVT-GETL---GRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFE-A 133 (337)
T ss_dssp EETTT-CCEE---EEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEE-C
T ss_pred EECCC-CcEE---EEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCC-eEEEecc-c
Confidence 99987 4443 223222 23456789999999 554443 4678999999987 5555554 4
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...+..++|+|+|++++.... + +.+|+..++.
T Consensus 134 ~~~~~~~~~s~dg~~l~~~~~----~--~~~~d~~~~~ 165 (337)
T d1pbyb_ 134 PRQITMLAWARDGSKLYGLGR----D--LHVMDPEAGT 165 (337)
T ss_dssp CSSCCCEEECTTSSCEEEESS----S--EEEEETTTTE
T ss_pred cCCceEEEEcCCCCEEEEEcC----C--cceeeeecCc
Confidence 556888999999999887643 2 5678877654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.15 E-value=1.2e-10 Score=103.15 Aligned_cols=155 Identities=10% Similarity=-0.029 Sum_probs=105.6
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCCeEEEEc
Q 018235 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
+++++.+ .++++++.+++|.+||+.+ .+.+.++. .|.....+++|+|++..+++++.
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t---------------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~ 59 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVAS---------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTT---------------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccCCCCC-cEEEEEcCCCEEEEEECCC---------------------CCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence 3567777 8999999999999999987 56667765 34556789999999984557788
Q ss_pred CCCcEEEEecCCCCcceecC---ccccCCCCCeEEEEecCCCCCEEEEEe------------CCCcEEEEECCCCCCceE
Q 018235 250 CNSCIYLWEPASDATWNVDP---NPFIGHSASVEDLQWSPTEPDVFASCS------------VDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~---~~~~~h~~~V~~v~~sp~~~~~las~s------------~Dg~I~iwD~r~~~~~~~ 314 (359)
.++.|++||+.+ ++..... .....+...+..++|+|++. .++.++ .++.+.+||..++ ....
T Consensus 60 ~~~~v~~~d~~t-~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 136 (346)
T d1jmxb_ 60 HYGDIYGIDLDT-CKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADG-LEAK 136 (346)
T ss_dssp TTTEEEEEETTT-TEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGG-GGBC
T ss_pred CCCcEEEEeCcc-CeeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccc-eeee
Confidence 899999999987 3332100 00111223456789999998 444433 5788999998876 3222
Q ss_pred Ee--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+ ......+..+.+++++.+++++.. +.+|+..++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 174 (346)
T d1jmxb_ 137 PVRTFPMPRQVYLMRAADDGSLYVAGPD-------IYKMDVKTGK 174 (346)
T ss_dssp CSEEEECCSSCCCEEECTTSCEEEESSS-------EEEECTTTCC
T ss_pred EEEeeeccCceEEEEecCCCEEEEeCCc-------ceEEEccCCC
Confidence 22 223345667778888877665432 6677766554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.06 E-value=3.6e-08 Score=88.34 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=46.6
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++...++.|.+||+.++ +.+..+. +...+..++|+|+|+.+++... ..++.|++||..+|++
T Consensus 292 ~~~~~~~~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~--~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALS--AGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EeecCCCeEEEEECCCC-cEEEEec-CCCCeeEEEECCCCCEEEEEEe--CCCCeEEEEECCCCCE
Confidence 45566788999999987 5665554 6677999999999986544321 2388999999999874
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.92 E-value=1.2e-07 Score=84.77 Aligned_cols=162 Identities=15% Similarity=-0.013 Sum_probs=96.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEE----------eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASW----------ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~----------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
+..++..+.. ..+.|+|+|. .++++ +.++.|.+||... .+++..+.
T Consensus 59 ~~~~~~~~~~--~~~a~SpDG~-~l~va~~~~~~~~~~~~~~~v~v~D~~t---------------------~~~~~~~~ 114 (373)
T d2madh_ 59 ILGHVNGGFL--PNPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVT---------------------FLPIADIE 114 (373)
T ss_pred EEEEEeCCCC--ccEEEcCCCC-EEEEEeecCCcccccccceEEEEEECCC---------------------CcEEEEEe
Confidence 3334434433 3789999994 45443 3468899999987 34444444
Q ss_pred CCCCce-------EEEEeCCCCCCeEE-EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 227 GHKDEG-------YAIDWNPITTGRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 227 ~h~~~v-------~~l~~sp~~~~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
.+.... ..+.|++++...++ ....++.+.+|+... .+ ...+...+.++.++|++..++++.+.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~s~~g~~~~v~~~~d 186 (373)
T d2madh_ 115 LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-SS-------DDQLLSSPTCYHIHPGAPSTFYLLCAQ 186 (373)
T ss_pred cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-Ce-------EEEEeccceeEEEecCCCcEEEEEcCC
Confidence 444332 34677777763222 224456777887755 22 223445667899999999888999999
Q ss_pred CcEEEEECCCCCCceEEeec------CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 299 GHIAIWDTRVGKSALTSFKA------HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~------h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+.+|+.... ........ +......+.+.+++.++... . ++.+.+|+...+
T Consensus 187 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~v~~~~~~~~ 244 (373)
T d2madh_ 187 GGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y----SGKILQADISAA 244 (373)
T ss_pred CeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCceEEEec-C----CceEEEEEcCCC
Confidence 99999999886 33333321 11223344555555444332 1 344555554443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.90 E-value=6e-09 Score=92.74 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=75.7
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC----------CCCeEEEEecCCCCCEEEEEeCC------
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----------SASVEDLQWSPTEPDVFASCSVD------ 298 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----------~~~V~~v~~sp~~~~~las~s~D------ 298 (359)
..+++.+. .++.++.++.+++|++..+..... .....+ ......++++|++..++++....
T Consensus 200 ~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 200 PAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp CEEETTTT-EEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred ccccCCCC-eEEEecCCCeEEEEecCCCcEEEE--eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence 44555554 778888899999999876322211 111111 12334578999988444443322
Q ss_pred ---CcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 299 ---GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 299 ---g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..|.+||+.++ +.+..+. +...+.+++|+|+|+.+++... ..++.|.+||..+|++
T Consensus 277 ~~~~~v~v~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~v~~--~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 277 TASRFVVVLDAKTG-ERLAKFE-MGHEIDSINVSQDEKPLLYALS--TGDKTLYIHDAESGEE 335 (355)
T ss_dssp SCEEEEEEEETTTC-CEEEEEE-EEEEECEEEECCSSSCEEEEEE--TTTTEEEEEETTTCCE
T ss_pred CCCCeEEEEeCCCC-cEEEEec-CCCCEEEEEEcCCCCeEEEEEE--CCCCEEEEEECCCCCE
Confidence 46999999987 6666664 3345889999999985433321 2378999999999874
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.84 E-value=5.6e-08 Score=90.50 Aligned_cols=138 Identities=8% Similarity=0.033 Sum_probs=99.9
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-----EecCCCCceEEEEeCCCCCCe
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-----KFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.++|.+++ .++. ..+|.+.+||+... +... .|..|...+.++.|||++. +
T Consensus 21 ~~~W~~d~-~~~~--~~~~~~~~~~~~t~---------------------~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~ 75 (470)
T d2bgra1 21 SLRWISDH-EYLY--KQENNILVFNAEYG---------------------NSSVFLENSTFDEFGHSINDYSISPDGQ-F 75 (470)
T ss_dssp CCEECSSS-EEEE--ESSSCEEEEETTTC---------------------CEEEEECTTTTTTSSSCCCEEEECTTSS-E
T ss_pred CCEeCCCC-EEEE--EcCCcEEEEECCCC---------------------CEEEEEchhhhhhccCccceeEECCCCC-E
Confidence 46788888 5665 45788999999872 2222 2345566799999999998 8
Q ss_pred EEEEc---------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 245 LVTGD---------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 245 l~sgs---------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
|+.++ .++.+.|||+.+ ++. ..+..|...+..+.|||+|. .||.. .++.+.+|+...+ .....
T Consensus 76 i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~----~~l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g-~~~~~ 147 (470)
T d2bgra1 76 ILLEYNYVKQWRHSYTASYDIYDLNK-RQL----ITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNL-PSYRI 147 (470)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTT-TEE----CCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTS-CCEEC
T ss_pred EEEEECCcceeeeccCceEEEEECCC-Ccc----cccccCCccccccccccCcc-eeeEe-ecccceEEECCCC-ceeee
Confidence 88774 356789999987 442 45778889999999999999 67664 4678999999887 33322
Q ss_pred eec------------------CCCCEEEEEEcCCCCeEEEEee
Q 018235 316 FKA------------------HNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 316 ~~~------------------h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
... ..+....+.|+|+|+.|++...
T Consensus 148 t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~ 190 (470)
T d2bgra1 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (470)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred eeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEe
Confidence 211 1223456789999999988654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=3.1e-06 Score=71.85 Aligned_cols=174 Identities=7% Similarity=0.002 Sum_probs=108.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.+...+.+......|+|++..++......+...++..... ..................|+
T Consensus 76 ~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 135 (269)
T d2hqsa1 76 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA--------------------SGQIRQVTDGRSNNTEPTWF 135 (269)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------TCCEEECCCCSSCEEEEEEC
T ss_pred eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc--------------------cccceeeeeccccccccccc
Confidence 3455778888999999999666666656666555554431 12222333344455566788
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+.+...+++...+|...+|......... .....+........|+|++..++.+....+...||-....... ..+..
T Consensus 136 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ 211 (269)
T d2hqsa1 136 PDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLS 211 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECC
T ss_pred cccccceecccccCCceEeeeecccccc---eeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-ceEee
Confidence 8887677777777765555433212211 2344456677788999999955555566666666655443222 34444
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+........|+|+|+.|++.... .....|.+++...+.
T Consensus 212 ~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 212 STFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGRF 249 (269)
T ss_dssp CSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSCC
T ss_pred cCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCCC
Confidence 55567788999999999887543 335567888877654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.65 E-value=5.4e-07 Score=80.78 Aligned_cols=73 Identities=8% Similarity=-0.005 Sum_probs=47.8
Q ss_pred EEecCCCCCEEEEEeCC--------CcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 282 LQWSPTEPDVFASCSVD--------GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 282 v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
++++|++..++++...+ ..|.+||..++ +.+..+. +...+..++|+|+|+.+++... ..++.|.+||.
T Consensus 269 ~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~-~~~~~~~~a~spDG~~~ly~s~--~~~~~v~v~D~ 344 (368)
T d1mdah_ 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPIS-NGHDSDAIIAAQDGASDNYANS--AGTEVLDIYDA 344 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCE-EEEEECEEEECCSSSCEEEEEE--TTTTEEEEEES
T ss_pred EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-cEeEEec-CCCceeEEEECCCCCEEEEEEe--CCCCeEEEEEC
Confidence 45666666333333222 34889999987 5555554 3346889999999975443321 23788999999
Q ss_pred cCCcc
Q 018235 354 SRGEI 358 (359)
Q Consensus 354 ~~g~v 358 (359)
.+|++
T Consensus 345 ~tgk~ 349 (368)
T d1mdah_ 345 ASDQD 349 (368)
T ss_dssp SSCEE
T ss_pred CCCCE
Confidence 98874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.61 E-value=3.2e-08 Score=87.86 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=92.4
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~ 241 (359)
+...+....+.+.+ ..++.++.+|.+++|++............ ........ .+......+++++++
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 193 DEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVE-----------ALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp TSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEE-----------SSCHHHHHTTEEECSSSCEEEETTT
T ss_pred ecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccC-----------CcccceEeeeeeccceEEEEEeCCC
Confidence 34445566677666 56777788999999998763211000000 00000000 001123457888888
Q ss_pred CCeEEEEcCC----------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCC
Q 018235 242 TGRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 242 ~~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~ 310 (359)
. .++....+ ..|.+||+.+ ++.+ ..+. +...+.+++|+|+++. ++++++.|+.|+|||++++
T Consensus 261 ~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~---~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg- 333 (355)
T d2bbkh_ 261 D-RIYLLVDQRDEWRHKTASRFVVVLDAKT-GERL---AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG- 333 (355)
T ss_dssp T-EEEEEEEECCTTCTTSCEEEEEEEETTT-CCEE---EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-
T ss_pred C-eEEEEeccCCceeecCCCCeEEEEeCCC-CcEE---EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-
Confidence 7 44433222 4699999987 4433 2232 3355889999999975 5677788999999999998
Q ss_pred CceEEeecCCCCEEEEEEcCCC
Q 018235 311 SALTSFKAHNADVNVISWNRCW 332 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s~~~ 332 (359)
+.+.++..+.....+|.+.++|
T Consensus 334 ~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 334 EELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp CEEEEECCCCSSCCEEECCCCC
T ss_pred CEEEEEeCcCCCccEEEeCCCC
Confidence 7788887776666666665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=2e-05 Score=66.63 Aligned_cols=170 Identities=6% Similarity=-0.021 Sum_probs=102.2
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...+...+|+|+|..++.+....+...+|.... .......+..+........|+|++.
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL--------------------ANGAVRQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------------------TTCCEEEEECCSSCEEEEEECTTSS
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeec--------------------ccCceeEEeeeecccccceecCCCC
Confidence 45677888999999966666666666555554433 1233455666777888999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.++......+...++......... ..............+++.+..++++...++...||...........+..+...
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 172 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQ 172 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSE
T ss_pred eeeEeeecCCccceeecccccccc---eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccc
Confidence 444444445444443332211111 22233445555667888887566666667665555433322334445556666
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.....|+|++..+++..... ....+.+.+...+
T Consensus 173 ~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~ 205 (269)
T d2hqsa1 173 NQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG 205 (269)
T ss_dssp EEEEEECTTSSEEEEEEECS-SCEEEEEEETTTC
T ss_pred ccccccccccceeEEEeecC-CceeeeEeecccc
Confidence 77889999999998876532 2334555555443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.49 E-value=2.2e-07 Score=86.35 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=88.2
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc-eecCccccCCCCCeEEEEecCCCCCEEEEEe---------CCCcEE
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNPFIGHSASVEDLQWSPTEPDVFASCS---------VDGHIA 302 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---------~Dg~I~ 302 (359)
+.+.|.+++. ++.. .++.|.+||+.++... ++....+..|...|.+++|||++. .||.++ .++.+.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEE
Confidence 4688999886 5553 3788999999885432 233356677888999999999999 666664 356789
Q ss_pred EEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 303 IWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|||+.++ .+..+..|...+..+.|+|+|+.+++.. ++.+.+|+..++.
T Consensus 96 l~d~~~~--~~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~ 143 (470)
T d2bgra1 96 IYDLNKR--QLITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLP 143 (470)
T ss_dssp EEETTTT--EECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSC
T ss_pred EEECCCC--cccccccCCccccccccccCcceeeEee-----cccceEEECCCCc
Confidence 9999985 4556778889999999999999999864 5568888877765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.29 E-value=4.1e-05 Score=68.46 Aligned_cols=170 Identities=8% Similarity=-0.068 Sum_probs=105.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE--ecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~sp~~~ 242 (359)
...+.++.|+|++..++++......|.+|++...... ..... ..........+.|+|+++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~------------------~~~~~~~~~~~g~gPr~i~f~pdg~ 205 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------------ELVGSVDAPDPGDHPRWVAMHPTGN 205 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------------EEEEEEECSSTTCCEEEEEECTTSS
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce------------------eeccceeecCCCCceEEEEECCCCc
Confidence 3457899999999666666666678999886652100 01111 112334677899999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCccee-cCc--------------cccCCCCCeEEEEecCCCCCEEEEEeCCCc-----EE
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNV-DPN--------------PFIGHSASVEDLQWSPTEPDVFASCSVDGH-----IA 302 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~-~~~--------------~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-----I~ 302 (359)
..+++...+++|.+|++........ ... ....+......+.++|+++.++++...+.. |.
T Consensus 206 ~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~ 285 (365)
T d1jofa_ 206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence 5557777889999999865321110 000 011122345689999999955565543333 77
Q ss_pred EEECCCCCCceEE---e---ecCCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcCC
Q 018235 303 IWDTRVGKSALTS---F---KAHNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 303 iwD~r~~~~~~~~---~---~~h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|++... ..+.. + .......+.++++| +|++|++.... .+.|.+|+.+..
T Consensus 286 ~~~~~~~-g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~---s~~v~v~~~~~~ 342 (365)
T d1jofa_ 286 GFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ---EGWLEIYRWKDE 342 (365)
T ss_dssp EEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS---SCEEEEEEEETT
T ss_pred EEEecCC-CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC---CCeEEEEEEeCC
Confidence 7877654 22221 1 12334567789998 78988877553 788999976543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.22 E-value=4.5e-06 Score=74.53 Aligned_cols=149 Identities=8% Similarity=-0.169 Sum_probs=95.2
Q ss_pred cCCCceeeEEEeCCCCcE--EEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 163 AHQGCVNRIRAMTQNPHI--CASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~--lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.+.+....++..+++... .++...+|. |.+||... .+.+..+.++... .+.|+
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~---------------------~~~~~~~~~~~~~--~~a~s 73 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAG 73 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEEC
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC---------------------CcEEEEEeCCCCC--cceEC
Confidence 355666666667776433 333445555 55567665 4556666666554 58999
Q ss_pred CCCCCeEEEE----------cCCCcEEEEecCCCCcceecCccccC-------CCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 239 PITTGRLVTG----------DCNSCIYLWEPASDATWNVDPNPFIG-------HSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 239 p~~~~~l~sg----------s~dg~I~lwd~~~~~~~~~~~~~~~~-------h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
|++. .|+.. +.++.|.+||..+ .+.. ..+.. .......++|+|+++.++++...++.|
T Consensus 74 pDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t-~~~~---~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 74 HSGS-DFALASTSFARSAKGKRTDYVEVFDPVT-FLPI---ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp TTSS-CEEEEEEEETTTTSSSEEEEEEEECTTT-CCEE---EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred CCCC-EEEEEcccCccccccccCCeEEEEECCC-CcEe---eeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 9998 66654 3477899999987 4432 11111 112234689999999666666678999
Q ss_pred EEEECCCCCCceEEeecCCC-------CEEEEEEcCCCCeEEEEee
Q 018235 302 AIWDTRVGKSALTSFKAHNA-------DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~-------~V~~i~~s~~~~~l~~~~~ 340 (359)
.+||+.++ +.+..+..+.. ....+.+++++.++.+...
T Consensus 149 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~ 193 (368)
T d1mdah_ 149 AGLSVPGA-SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp EEEEETTT-EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred EEEECCCC-cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEec
Confidence 99999987 65555544332 2345677888887777654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.02 E-value=0.00059 Score=60.59 Aligned_cols=77 Identities=6% Similarity=0.006 Sum_probs=52.9
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc--eEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA--LTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~--~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..+.++.|+|+++.++++......|.+|+....... ...+ .........+.|+|+++++...... ++.|.+|+
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~---~~~V~v~~ 221 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA---GNRICEYV 221 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC---CCEEEEEE
Confidence 457899999999956655555668888876654121 1112 2335678999999999988766543 67788887
Q ss_pred CcCC
Q 018235 353 CSRG 356 (359)
Q Consensus 353 ~~~g 356 (359)
...+
T Consensus 222 ~~~~ 225 (365)
T d1jofa_ 222 IDPA 225 (365)
T ss_dssp ECTT
T ss_pred ecCC
Confidence 6544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.00 E-value=2.6e-05 Score=71.27 Aligned_cols=162 Identities=5% Similarity=-0.097 Sum_probs=105.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~ 241 (359)
.|.-.+......|+|..++++...+++|.++|+.. .+...++. .+....++++++|++
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t---------------------~k~~~ii~iP~g~gphgi~~spdg 127 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDI---------------------MKTDKITHIPNVQAIHGLRLQKVP 127 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT---------------------TEEEEEEECTTCCCEEEEEECCSS
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCC---------------------CcEeeEEecCCCCCccceEEeccC
Confidence 35555556666888977778888999999999987 34444443 356688999999998
Q ss_pred CCeEEEEcCCCcE------------------EEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC------
Q 018235 242 TGRLVTGDCNSCI------------------YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------ 297 (359)
Q Consensus 242 ~~~l~sgs~dg~I------------------~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------ 297 (359)
+..++++.....+ ..+|..+ .... .... -......+.|+|+++.+++++..
T Consensus 128 ~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-~~v~---~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~ 202 (441)
T d1qnia2 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET-MDVA---WQVI-VDGNLDNTDADYTGKYATSTCYNSERAVD 202 (441)
T ss_dssp BCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT-CSEE---EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred CEEEEEeccCCcccccCcccccccccccceEEeecCcc-ceee---EEEe-cCCCccceEECCCCCEEEEEecCCCceEE
Confidence 7544554444444 3355544 2211 1111 12346778999999955555532
Q ss_pred ----------------------------------CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecc
Q 018235 298 ----------------------------------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMM 343 (359)
Q Consensus 298 ----------------------------------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~ 343 (359)
++.+.|++.... ..+..+....+ ...+.++|+|++++.+..
T Consensus 203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvgks-PhGv~vSPDGkyl~~~~~--- 277 (441)
T d1qnia2 203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTRYIPVPKN-PHGLNTSPDGKYFIANGK--- 277 (441)
T ss_dssp HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEEEECCBSS-CCCEEECTTSCEEEEECT---
T ss_pred EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEEEEeCCCC-ccCceECCCCCEEEEeCC---
Confidence 345555554443 55666665555 467899999999887654
Q ss_pred cceEEEEEeCcC
Q 018235 344 EHFLFMILDCSR 355 (359)
Q Consensus 344 ~d~~i~iwd~~~ 355 (359)
.+..+.+||..+
T Consensus 278 ~~~tvsv~d~~k 289 (441)
T d1qnia2 278 LSPTVSVIAIDK 289 (441)
T ss_dssp TSSBEEEEEGGG
T ss_pred cCCcEEEEEeeh
Confidence 378899999764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.00077 Score=56.63 Aligned_cols=154 Identities=8% Similarity=-0.074 Sum_probs=100.9
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~ 244 (359)
...+.|++.+++ +++++-.....+..++.... ....+. .-.....++++++.+. +
T Consensus 98 ~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~p~~i~~~~~g~-~ 153 (260)
T d1rwia_ 98 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK----------------------TQTVLPFTGLNDPDGVAVDNSGN-V 153 (260)
T ss_dssp CSEEEEEECTTC-CEEEEEGGGTEEEEECTTCS----------------------SCEECCCCSCCSCCEEEECTTCC-E
T ss_pred eecccccccccc-eeEeeccccccccccccccc----------------------eeeeeeecccCCcceeeecCCCC-E
Confidence 456788888888 67776666666777765541 111111 1122446889999887 8
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADV 323 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V 323 (359)
+++...++.|..++........ .....-.....|++.+++. ++++....+.|..++.... ....+ ...-...
T Consensus 154 ~v~~~~~~~i~~~d~~~~~~~~----~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~~P 226 (260)
T d1rwia_ 154 YVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGST--TSTVLPFTGLNTP 226 (260)
T ss_dssp EEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCS--CCEECCCCSCCCE
T ss_pred eeeccccccccccccccceeee----eeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCC--eEEEEccCCCCCe
Confidence 8888888899999986533222 1123345678999999987 9999988999988876653 22222 2223456
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|+++++|.+++.+.. .+.|+.++..
T Consensus 227 ~~i~~d~~g~l~vad~~----~~rI~~i~~~ 253 (260)
T d1rwia_ 227 LAVAVDSDRTVYVADRG----NDRVVKLTSL 253 (260)
T ss_dssp EEEEECTTCCEEEEEGG----GTEEEEECCC
T ss_pred EEEEEeCCCCEEEEECC----CCEEEEEeCC
Confidence 89999999987776554 4556655543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.85 E-value=0.00082 Score=57.79 Aligned_cols=129 Identities=8% Similarity=0.002 Sum_probs=92.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.|.......+-...+..+++.|+| +++++...+++|..|+... . ...+........
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g----------------------~-~~~~~~~~~~~~ 71 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG----------------------N-QQIHATVEGKVS 71 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC----------------------C-EEEEEECSSEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC----------------------C-EEEEEcCCCCcc
Confidence 444444445544568899999999 7999989999988887544 1 233444556789
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+++|++++. ++++...++.+.+|+.......... ..........+++.+.+++. ++++.+.++.+..+|....
T Consensus 72 gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 72 GLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET-LLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE-EEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTT
T ss_pred eEEEcCCCC-eEEEecCCceEEEEEecccccceee-ccccCCccccceeEEccCCC-EEeeccccccceeeeccCC
Confidence 999999998 8888888888888876542221110 11122446689999999998 8888888999999998875
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.77 E-value=7.2e-05 Score=68.20 Aligned_cols=156 Identities=9% Similarity=-0.042 Sum_probs=95.6
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCC-----CCC-C----CCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQG-----APQ-V----SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~-----~~~-~----~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..++|++.+|+|++|++.+... +.......+.. ... . ...........|.........+|+|+.++++.
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~-l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d 90 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRE-LMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND 90 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEE-EEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcE-EEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence 4578888999999999876321 11111100000 000 0 00011111233555555666789998455666
Q ss_pred cCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcE------------------EEEECCCC
Q 018235 249 DCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHI------------------AIWDTRVG 309 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I------------------~iwD~r~~ 309 (359)
..+++|.++|+.+ .+.. ..+ ..+...+..++|+|+++..++++.....+ ..+|..+.
T Consensus 91 ~~~~rVavIDl~t-~k~~---~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~ 166 (441)
T d1qnia2 91 KANTRVARIRLDI-MKTD---KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM 166 (441)
T ss_dssp TTTTEEEEEETTT-TEEE---EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred CCCCEEEEEECCC-CcEe---eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence 7888999999987 3322 222 34677899999999998766666554444 44888876
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
....++... .....+.|+|+|+++.+.+.+
T Consensus 167 -~v~~qI~v~-~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 167 -DVAWQVIVD-GNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp -SEEEEEEES-SCCCCEEECSSSSEEEEEESC
T ss_pred -eeeEEEecC-CCccceEECCCCCEEEEEecC
Confidence 555555433 346788999999998877643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.77 E-value=0.0017 Score=55.05 Aligned_cols=155 Identities=10% Similarity=0.116 Sum_probs=106.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~ 241 (359)
+......+++.+++ .++++....+.+.+++... ..+..+ ..+......+++.+.+
T Consensus 112 ~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g----------------------~~~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG----------------------NVLHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS----------------------CEEEEEECTTTCSSEEEEEECSSS
T ss_pred cccccceeccccCC-cEEEEeeccceeeEeccCC----------------------ceeecccccccccccceeeeccce
Confidence 34556778888877 5666666667777776543 333333 3345567889999988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCceEEee-
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFK- 317 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~- 317 (359)
. ++++....+.|++|+.. ++.+ ..+ .++......|++.|++. ++++-+ .++.|.+|+.. + ..+..+.
T Consensus 169 ~-i~v~d~~~~~V~~~d~~--G~~~---~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~-G-~~~~~~~~ 239 (279)
T d1q7fa_ 169 E-IFISDNRAHCVKVFNYE--GQYL---RQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-G-QLISALES 239 (279)
T ss_dssp E-EEEEEGGGTEEEEEETT--CCEE---EEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-S-CEEEEEEE
T ss_pred e-EEeeeccccceeeeecC--Ccee---eeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCC-C-CEEEEEeC
Confidence 7 88888888999999974 3433 222 23455678999999998 777754 45679999854 4 4555553
Q ss_pred -cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 -AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 -~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
........|++.++|.+++.+ . ++.|++|....
T Consensus 240 ~~~~~~p~~vav~~dG~l~V~~-~----n~~v~~fr~~~ 273 (279)
T d1q7fa_ 240 KVKHAQCFDVALMDDGSVVLAS-K----DYRLYIYRYVQ 273 (279)
T ss_dssp SSCCSCEEEEEEETTTEEEEEE-T----TTEEEEEECSC
T ss_pred CCCCCCEeEEEEeCCCcEEEEe-C----CCeEEEEEeee
Confidence 223457889999999866543 3 67799997654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00034 Score=64.49 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=92.8
Q ss_pred ceeeEEEeCCCCcEEEEE--------eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 167 CVNRIRAMTQNPHICASW--------ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~--------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.+....++|++..+++.. +..|.+.|+|+.... ..++.........+....||
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-------------------~~~l~~~~~~~~~l~~~~wS 122 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------------PQSLDPPEVSNAKLQYAGWG 122 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-------------------CEECCCTTCCSCCCSBCCBC
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-------------------eeeccCccCCccccceeeec
Confidence 566778999995544432 345788899988621 11111111222344568899
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC-----------------CeEEEEecCCCCCEEEEEe-CCCc
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA-----------------SVEDLQWSPTEPDVFASCS-VDGH 300 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~-----------------~V~~v~~sp~~~~~las~s-~Dg~ 300 (359)
|+|. .||-.. ++.|.+.+...+.... .+..+... .-..+.|||+|. .||... .+..
T Consensus 123 PDG~-~iafv~-~~nl~~~~~~~~~~~~---lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~ 196 (465)
T d1xfda1 123 PKGQ-QLIFIF-ENNIYYCAHVGKQAIR---VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSR 196 (465)
T ss_dssp SSTT-CEEEEE-TTEEEEESSSSSCCEE---EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTT
T ss_pred cCCc-eEEEEe-cceEEEEecCCCceEE---EecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccc
Confidence 9998 776665 6778888775532211 11111111 124678999999 566543 3333
Q ss_pred EEE---------------------------------EECCCCCCceEEe-----ecCCCCEEEEEEcCCCCeEEEEeeec
Q 018235 301 IAI---------------------------------WDTRVGKSALTSF-----KAHNADVNVISWNRCWLAVCWHLEVM 342 (359)
Q Consensus 301 I~i---------------------------------wD~r~~~~~~~~~-----~~h~~~V~~i~~s~~~~~l~~~~~~~ 342 (359)
|.. +|+..+....... .....-+..+.|++++.+++....-.
T Consensus 197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~ 276 (465)
T d1xfda1 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (465)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence 333 3333221100000 00111257789999998776655433
Q ss_pred ccceEEEEEeCcCCcc
Q 018235 343 MEHFLFMILDCSRGEI 358 (359)
Q Consensus 343 ~~d~~i~iwd~~~g~v 358 (359)
+....+.++|..+|.+
T Consensus 277 q~~~~i~~~d~~tg~~ 292 (465)
T d1xfda1 277 QNVSILTLCDATTGVC 292 (465)
T ss_dssp SCEEEEEEEETTTCCE
T ss_pred cccceEEEEcCCCCcE
Confidence 4455688888888764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.71 E-value=0.0041 Score=53.74 Aligned_cols=159 Identities=9% Similarity=-0.045 Sum_probs=94.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...+..+.|.+++ ++.++-...|.|+.|+... ......+........+|++++++. +
T Consensus 39 ~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g---------------------~~~~~~~~~~~~~p~gla~~~dG~-l 95 (319)
T d2dg1a1 39 GLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHKDGR-L 95 (319)
T ss_dssp CCCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECTTSC-E
T ss_pred CcCcEeCEECCCC-CEEEEECCCCEEEEEECCC---------------------CeEEEEEeCCCCCeeEEEECCCCC-E
Confidence 3456789999998 6888877889888887765 222333434445678999999987 6
Q ss_pred EEEEcCC----CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC------CCcEEEEECCCCCCceE
Q 018235 245 LVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTRVGKSALT 314 (359)
Q Consensus 245 l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r~~~~~~~ 314 (359)
+++...+ +.|...+... ..... ...-..-....+++.+.|+|. ++++... -+.+..++... ..+.
T Consensus 96 ~va~~~~~~~~~~i~~~~~~~-~~~~~-~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~~ 170 (319)
T d2dg1a1 96 FVCYLGDFKSTGGIFAATENG-DNLQD-IIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTVT 170 (319)
T ss_dssp EEEECTTSSSCCEEEEECTTS-CSCEE-EECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCEE
T ss_pred EEEecCCCccceeEEEEcCCC-ceeee-eccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--ceeE
Confidence 6654322 2344444433 22110 000011234578999999998 7776432 22344444443 3333
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+...-...+.|+|+|++..|.+.... .+.|..++..
T Consensus 171 ~~~~~~~~pnGia~s~dg~~lyvad~~---~~~I~~~d~~ 207 (319)
T d2dg1a1 171 PIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALE 207 (319)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEEC
T ss_pred EEeeccceeeeeeeccccceEEEeccc---CCceEEEEEc
Confidence 333333446889999999866555432 4556666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.0015 Score=54.85 Aligned_cols=153 Identities=7% Similarity=-0.025 Sum_probs=97.5
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
....+++.+++ +++++....+.|++++-.. ...+..+. .....+++++.+++. +++
T Consensus 58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~---------------------~~~~~~~~-~~~~p~~iavd~~g~-i~v 113 (260)
T d1rwia_ 58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSN---------------------NQTVLPFD-GLNYPEGLAVDTQGA-VYV 113 (260)
T ss_dssp SCCCEEECTTC-CEEEEETTTEEEEECTTCS---------------------CCEECCCC-SCCSEEEEEECTTCC-EEE
T ss_pred CceEEEEcCCC-CEEEeeeeeceeeeeeecc---------------------ceeeeeee-eeeecccccccccce-eEe
Confidence 34678888888 7787777766666654333 11111111 123568999999887 777
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNV 325 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~ 325 (359)
+-.....+..++........ .... ......+++++|++. ++++...++.|..+|.... . ...+ ...-...+.
T Consensus 114 ~d~~~~~~~~~~~~~~~~~~---~~~~-~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~-~-~~~~~~~~~~~p~g 186 (260)
T d1rwia_ 114 ADRGNNRVVKLAAGSKTQTV---LPFT-GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESN-N-QVVLPFTDITAPWG 186 (260)
T ss_dssp EEGGGTEEEEECTTCSSCEE---CCCC-SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTC-C-EEECCCSSCCSEEE
T ss_pred eccccccccccccccceeee---eeec-ccCCcceeeecCCCC-Eeeeccccccccccccccc-e-eeeeeccccCCCcc
Confidence 66666777777765422222 1111 223457899999987 8888888999999998764 2 2233 234455788
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|++.++|.+++.+.. .+.|..++..
T Consensus 187 i~~d~~g~l~vsd~~----~~~i~~~~~~ 211 (260)
T d1rwia_ 187 IAVDEAGTVYVTEHN----TNQVVKLLAG 211 (260)
T ss_dssp EEECTTCCEEEEETT----TTEEEEECTT
T ss_pred ceeeeeeeeeeeecC----CCEEEEEeCC
Confidence 999999987766654 4445445443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.60 E-value=0.00058 Score=58.82 Aligned_cols=113 Identities=12% Similarity=-0.032 Sum_probs=81.8
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.+.+++++|+|+ ++++...+++|..|+... .. ..+......+.+++|+|++. ++++...++.+.+|+.....
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g--~~----~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQ----QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTC--CE----EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCC--CE----EEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccc
Confidence 577999999998 999999999999888653 22 23445567899999999998 89988888888888876542
Q ss_pred CceEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 SALTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 ~~~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.....+ .......+.+.+.+++.+++.... ...+..++...
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~----~~~i~~~~~~~ 143 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSY----RGAIWLIDVVQ 143 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETT----TTEEEEEETTT
T ss_pred cceeeccccCCccccceeEEccCCCEEeeccc----cccceeeeccC
Confidence 333333 234566899999999987766543 33444444443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.48 E-value=0.011 Score=49.84 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=105.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc-cccccc-----------ccccCCCC-----------CC----CCCC
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESE-----------TIVGQGAP-----------QV----SNQS 220 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~-----------~~~~~~~~-----------~~----~~~~ 220 (359)
-..|++.+++ +++++-..+..|++||...... .+.... ........ .+ ....
T Consensus 25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 103 (279)
T d1q7fa_ 25 PSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ 103 (279)
T ss_dssp EEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred ccEEEEcCCC-CEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence 4678999988 6888777788999998654211 000000 00000000 00 1122
Q ss_pred CcEEec-CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 221 PLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 221 ~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
....+. .......+++..+.+. ++++....+.+.+++.. ++.+.. .....+......+++.+++. ++++....+
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~--g~~~~~-~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~ 178 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHK-FGCSKHLEFPNGVVVNDKQE-IFISDNRAH 178 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEE-EECTTTCSSEEEEEECSSSE-EEEEEGGGT
T ss_pred ceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC--Cceeec-ccccccccccceeeecccee-EEeeecccc
Confidence 222222 1223456778888776 66666666777777753 333310 11234567788999999987 898999999
Q ss_pred cEEEEECCCCCCceEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 300 HIAIWDTRVGKSALTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.|++||... ..+.++ .++......|++.++|.+++.+... +..|.+++.
T Consensus 179 ~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~---~~~v~~f~~ 229 (279)
T d1q7fa_ 179 CVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHN---NFNLTIFTQ 229 (279)
T ss_dssp EEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSS---SCEEEEECT
T ss_pred ceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCC---CcEEEEECC
Confidence 999999765 455555 2344457889999999987776432 445777763
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.0013 Score=60.51 Aligned_cols=140 Identities=10% Similarity=0.138 Sum_probs=84.5
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC---CCceEEEEeCCCCCCeEEEE
Q 018235 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH---KDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~sg 248 (359)
.|.+++ .++.. ..+|.|.+||+... .....+..+ .-.+....|||++. .++..
T Consensus 23 ~W~~~~-~~~~~-~~~g~i~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~ 78 (465)
T d1xfda1 23 KWISDT-EFIYR-EQKGTVRLWNVETN---------------------TSTVLIEGKKIESLRAIRYEISPDRE-YALFS 78 (465)
T ss_dssp CBSSSS-CBCCC-CSSSCEEEBCGGGC---------------------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEE
T ss_pred EEeCCC-cEEEE-eCCCcEEEEECCCC---------------------CEEEEEcCccccccccceeEECCCCC-eEEEE
Confidence 577776 44433 56788999998762 222222221 12566788999998 55544
Q ss_pred ---------cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ec
Q 018235 249 ---------DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (359)
Q Consensus 249 ---------s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (359)
+..+.+.++|+.++.... +.........+....|||+|. .+|-.. ++.|.+.+...+ ..++.. .+
T Consensus 79 ~~~~~~~r~s~~~~~~i~d~~~~~~~~--l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~-~~~~lt~~g 153 (465)
T d1xfda1 79 YNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGK-QAIRVVSTG 153 (465)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSS-CCEEEECCC
T ss_pred EcccceeEeeccccEEEEEccCCceee--ccCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCC-ceEEEeccc
Confidence 335678899998733211 122233344566689999999 555544 567888887765 333222 22
Q ss_pred CCCCE-----------------EEEEEcCCCCeEEEEee
Q 018235 319 HNADV-----------------NVISWNRCWLAVCWHLE 340 (359)
Q Consensus 319 h~~~V-----------------~~i~~s~~~~~l~~~~~ 340 (359)
....| ..+-|||+|+.|++...
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred CcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence 22112 46779999999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.31 E-value=0.0074 Score=51.99 Aligned_cols=117 Identities=8% Similarity=0.092 Sum_probs=76.7
Q ss_pred ceEEEEeCCCCCC----eEEEEcCCCcEEEEecCCCCcceec--CccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 231 EGYAIDWNPITTG----RLVTGDCNSCIYLWEPASDATWNVD--PNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 231 ~v~~l~~sp~~~~----~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.-++|+|+|++.+ ++++-+..+.|..|++...+..... ...+.+ +....-.+++..+|. ++++....+.|.+
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEE
Confidence 3467899887642 4556677888999987653332110 011111 223356789999998 8888888899999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
||...+ ..+..+......+++++|.++++.|...... .+.|...+
T Consensus 252 ~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~~ 296 (314)
T d1pjxa_ 252 FGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFE 296 (314)
T ss_dssp ECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred EeCCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEEE
Confidence 998876 5555666666678999999998755444331 44455444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.30 E-value=0.0077 Score=51.94 Aligned_cols=107 Identities=8% Similarity=0.032 Sum_probs=72.3
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCc---c-ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN---P-FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~---~-~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.-++|+|+|++..++++-+..+.|..|++...+....... . ........-.+++.++|. ++++....+.|.+||.
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC
Confidence 4578999999974556667788999999875433221000 0 111122355799999998 9999999999999996
Q ss_pred CCCCCceEEee------cCCCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKSALTSFK------AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~~~~~~~------~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
. + +.+..+. .+...+.+++|.+.+..++....
T Consensus 257 ~-G-~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 257 R-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp T-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred C-C-cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 4 4 5665553 23445789999988776655543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.91 E-value=0.0054 Score=52.90 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=81.9
Q ss_pred ceeeEEEeCCCC----cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeCCCC
Q 018235 167 CVNRIRAMTQNP----HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPIT 241 (359)
Q Consensus 167 ~V~~i~~~p~~~----~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~ 241 (359)
.-|.|.|+|++. .++++-+..+.|..|++....... ..+....+.+. ....-+|++..++
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---------------~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---------------NKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---------------EEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---------------eeeEEEEccccccccceeeEEecCC
Confidence 346788888763 366667788889988876521100 00111122221 1234578999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
. ++++....+.|.+||... +... ..+......+.+++|.|++..++++.+.++.|..+++...
T Consensus 238 n-lyVa~~~~g~I~~~dp~~-g~~~---~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 238 N-LLVANWGSSHIEVFGPDG-GQPK---MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C-EEEEEETTTEEEEECTTC-BSCS---EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred c-EEEEEcCCCEEEEEeCCC-CEEE---EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 7 777777788999999865 3332 2334445678899999998778899999999888887654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.38 E-value=0.18 Score=40.93 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=33.1
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.++|+.+. ....+..+. ......|+|+|+.|++.. ++.|.++++.++++
T Consensus 215 ~l~~~d~~g~--~~~~lt~~~-~~~~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 215 QIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKI 265 (281)
T ss_dssp EEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCE
T ss_pred ceEEEeCCCC--ceEEeecCC-CcccccCcCCCCEEEEEe-----CCEEEEEECCCCCE
Confidence 4666777764 233343222 234457999999998864 45588888888764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.25 Score=40.71 Aligned_cols=161 Identities=7% Similarity=-0.053 Sum_probs=95.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+...+.++.|.+.+..++.+-...+.|+..++.. ......+..-.....+|++...+..
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g---------------------~~~~~v~~~~~~~p~~iAvD~~~~~ 92 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGRT 92 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTTE
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc---------------------CCcEEEEEeccccccEEEEeccCCe
Confidence 3446788999988766776666778888888875 2222233222234566666555542
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE--ECCCCCCceEEeecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW--DTRVGKSALTSFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw--D~r~~~~~~~~~~~h~~ 321 (359)
+.++-...+.|.+.++..... . ..+.........++.+|....++.+-...+..+|+ ++... .....+...-.
T Consensus 93 lY~~d~~~~~I~~~~~dg~~~-~---~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~~~~~ 167 (263)
T d1npea_ 93 IFWTDSQLDRIEVAKMDGTQR-R---VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLG 167 (263)
T ss_dssp EEEEETTTTEEEEEETTSCSC-E---EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCS
T ss_pred EEEeccCCCEEEEEecCCceE-E---EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceeeeeeccc
Confidence 445656678999999865322 1 11222335688999999887566665443343454 55443 22222233334
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
..+.|++.+.+..|.|.... .+.|...+.
T Consensus 168 ~P~glaiD~~~~~lYw~d~~---~~~I~~~~~ 196 (263)
T d1npea_ 168 LPNGLTFDAFSSQLCWVDAG---THRAECLNP 196 (263)
T ss_dssp CEEEEEEETTTTEEEEEETT---TTEEEEEET
T ss_pred ccceEEEeecCcEEEEEeCC---CCEEEEEEC
Confidence 56889999888888776432 344554444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.18 E-value=0.014 Score=48.13 Aligned_cols=95 Identities=8% Similarity=0.065 Sum_probs=61.3
Q ss_pred EeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE-EeCCC-----cEEEEECC
Q 018235 236 DWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS-CSVDG-----HIAIWDTR 307 (359)
Q Consensus 236 ~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las-~s~Dg-----~I~iwD~r 307 (359)
..||+ |. .+|-.+ +|.|.+.|+.. +.. +.+..+...+...+|||+|+ .||. ...++ .|.+++..
T Consensus 5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~-g~~----~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 5 LLNPDIHGD-RIIFVC-CDDLWEHDLKS-GST----RKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp CEEEEEETT-EEEEEE-TTEEEEEETTT-CCE----EEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETT
T ss_pred ccCCCCCCC-EEEEEe-CCcEEEEECCC-CCE----EEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEEEEec
Confidence 35677 77 555444 56788888876 332 45666778889999999999 5554 33332 36677776
Q ss_pred CCCCceEEeecC-------CCCEEEEEEcCCCCeEEEEee
Q 018235 308 VGKSALTSFKAH-------NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 308 ~~~~~~~~~~~h-------~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.+ ....+..+ ......+.|+|+|+.+++...
T Consensus 77 ~g--~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 77 NG--EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp TT--EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred CC--ceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence 65 22333211 224567899999998887643
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.75 E-value=0.34 Score=40.53 Aligned_cols=112 Identities=5% Similarity=-0.085 Sum_probs=73.4
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc--EEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~sp~~~ 242 (359)
-..-|.+.|++++..++++-+..+.|..|++....... ..... ..+.+-.....+++...+|.
T Consensus 147 ~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~---------------~~~~~~~~~~~~~~g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 147 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP---------------TGKAEVFIDSTGIKGGMDGSVCDAEGH 211 (295)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB---------------SSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred cCCcceeeecCCCceEEEeecccceeeEeeeccccccc---------------ccceEEEeccCcccccccceEEcCCCC
Confidence 34568899999997788888889999999986521111 01111 12223334567889988886
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec-CCCCCEEEEEeC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSV 297 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~las~s~ 297 (359)
+.++.-..+.|..||.. ++.+ ..+.--...+++++|- |+...+++|...
T Consensus 212 -lWva~~~~g~V~~~dp~--G~~~---~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 212 -IWNARWGEGAVDRYDTD--GNHI---ARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp -EEEEEETTTEEEEECTT--CCEE---EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -EEeeeeCCCceEEecCC--CcEe---eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 66666667889999974 4433 2333334568999996 666657777554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.61 E-value=0.5 Score=39.39 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=92.1
Q ss_pred ceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 167 CVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
.+|.+.+.|+|..++.+... .+.-.+|.+.. ......+.. ...-.++.|++++..
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~---------------------g~~~~~~~~-~~~~Ng~~~s~d~~~ 161 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK---------------------GKVTKLFAD-ISIPNSICFSPDGTT 161 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET---------------------TEEEEEEEE-ESSEEEEEECTTSCE
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeecC---------------------CcEEEEeec-cCCcceeeecCCCce
Confidence 57888899999433433322 22334554433 222222222 224578999999985
Q ss_pred eEEEEcCCCcEEEEecCCCCcceec-Cc---cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVD-PN---PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~-~~---~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
++++-+..+.|..+++......... .. .+.+-......+++..+|. +.++.-..+.|..||.. + +.+..+..-
T Consensus 162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~-G-~~~~~i~lP 238 (295)
T d2ghsa1 162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-G-NHIARYEVP 238 (295)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-C-CEEEEEECS
T ss_pred EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCC-C-cEeeEecCC
Confidence 6677778889999987542221110 01 1223345577889999997 88888788899999965 4 566666544
Q ss_pred CCCEEEEEEc-CCCCeEEEEee
Q 018235 320 NADVNVISWN-RCWLAVCWHLE 340 (359)
Q Consensus 320 ~~~V~~i~~s-~~~~~l~~~~~ 340 (359)
...+++++|- ++...|..+..
T Consensus 239 ~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 239 GKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp CSBEEEEEEESTTSCEEEEEEB
T ss_pred CCceEEEEEeCCCCCEEEEEEC
Confidence 4568999996 56665555433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=1.1 Score=36.60 Aligned_cols=168 Identities=8% Similarity=-0.057 Sum_probs=95.8
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.....+.++.|.+....+..+=...+.|+-.++..... .......+........+|++.+.+
T Consensus 26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~-----------------~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC-----------------CcceEEEEeCCCCCcceEEEeecc
Confidence 355667788999987756666655667777666653100 011112222222233445554445
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCceEEeecCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
..+..+-...++|.+.++.. .... ...........+++.+|....++.+.. ..+.|.-.++... .....+...-
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g-~~~~---~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~ 163 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKG-VKRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 163 (266)
T ss_dssp TEEEEEETTTTEEEEEETTS-SSEE---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred ceEEEEecCCCEEEeEecCC-ceEE---EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceeccccccc
Confidence 43566666678899999864 2222 223344566889999997664666643 3455666666553 2222233334
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+.|++.+.+..|.|.... .+.|...+..
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~---~~~I~~~~~d 194 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSK---LHSISSIDVN 194 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETT
T ss_pred ceeeEEEeeccccEEEEecCC---cCEEEEEECC
Confidence 567899999988888887542 4456655543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.32 E-value=1.7 Score=35.43 Aligned_cols=160 Identities=13% Similarity=-0.015 Sum_probs=94.0
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...+..+++.+.+.++..+-...+.|.+.++.. ......+........+|+.+|....+
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g---------------------~~~~~~~~~~~~~P~~l~vd~~~g~l 134 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG---------------------VKRKTLFRENGSKPRAIVVDPVHGFM 134 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---------------------SSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCC---------------------ceEEEEEcCCCCCcceEEEEcccCeE
Confidence 356778899877767888878889999999876 22223333444567788888865423
Q ss_pred EEEE-cCCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC--C
Q 018235 245 LVTG-DCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH--N 320 (359)
Q Consensus 245 l~sg-s~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h--~ 320 (359)
+.+- +..+.|...++.. ... ..+. ..-...+.+++.+.+..++.+-+..+.|...++... .....+... .
T Consensus 135 y~~~~~~~~~I~r~~~dG-s~~----~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~ 208 (266)
T d1ijqa1 135 YWTDWGTPAKIKKGGLNG-VDI----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRL 208 (266)
T ss_dssp EEEECSSSCEEEEEETTS-CCE----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTT
T ss_pred EEeccCCCcceeEeccCC-Cce----ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC-CEEEEEeCCCcc
Confidence 3332 2334566556543 221 1222 223557889999987757777677889999998765 322222222 2
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.....|++. +..|.|.... .+.|...+..+|
T Consensus 209 ~~p~~lav~--~~~ly~td~~---~~~I~~~~~~~g 239 (266)
T d1ijqa1 209 AHPFSLAVF--EDKVFWTDII---NEAIFSANRLTG 239 (266)
T ss_dssp SSEEEEEEE--TTEEEEEETT---TTEEEEEETTTC
T ss_pred cccEEEEEE--CCEEEEEECC---CCeEEEEECCCC
Confidence 234556655 4556665432 344444444443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.64 E-value=3.4 Score=34.94 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEc---CCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEe--C-------------C
Q 018235 238 NPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCS--V-------------D 298 (359)
Q Consensus 238 sp~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s--~-------------D 298 (359)
..++..+|+... ...+|-+|++...+..+.-...+.. .....++|....++. +++|-. . -
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcC
Confidence 556665666653 4567889988653322211122221 235689999999988 888731 1 1
Q ss_pred CcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++..+|..... . ...+...-...|.|+++|++++|..+... ...|+.|+..
T Consensus 186 ~~g~v~~~~~~-~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~ 236 (340)
T d1v04a_ 186 AWSFVTYYSPN-D-VRVVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKH 236 (340)
T ss_dssp CCEEEEEECSS-C-EEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEEC
T ss_pred CceeEEEEcCC-c-eEEEcCCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeC
Confidence 23344444443 2 22222233468999999999988776543 4446665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.26 E-value=5.2 Score=33.21 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEE
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~ 336 (359)
-+++.|+... ++...+.-|.|++||+.++ .++..-+-....|...+-+....-++
T Consensus 259 vamqvs~kyg-iiyviTK~G~i~lyDleTg-t~i~~nRIs~~~iF~~a~~~~~~Gi~ 313 (327)
T d1utca2 259 VAMQISEKHD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEATAGII 313 (327)
T ss_dssp EEEEEETTTT-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred EEEEeeccCC-EEEEEecCcEEEEEEcccc-cEEEEeecCCCceEEeccCCCCceEE
Confidence 4566677777 8888899999999999998 66665555566666555554433333
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=88.67 E-value=1.3 Score=37.70 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=57.6
Q ss_pred EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEEEEECCCCCCceEEeec--CCCCEEEEEEcC
Q 018235 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKA--HNADVNVISWNR 330 (359)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~--h~~~V~~i~~s~ 330 (359)
+.+||+.+ ++|.........|.......++.+++. +++.|+.+ ..+.+||..+. . -..+.. ....-.+.+..+
T Consensus 54 ~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~-~-w~~~~~~~~~r~~~~~~~~~ 129 (387)
T d1k3ia3 54 TSSWDPST-GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD-S-WIPGPDMQVARGYQSSATMS 129 (387)
T ss_dssp EEEECTTT-CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT-E-EEECCCCSSCCSSCEEEECT
T ss_pred EEEEECCC-CcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccC-c-ccccccccccccccceeeec
Confidence 67899987 566421111223433344567889998 88887655 67999999875 2 112211 111123456677
Q ss_pred CCCeEEEEeeecc--cceEEEEEeCcCC
Q 018235 331 CWLAVCWHLEVMM--EHFLFMILDCSRG 356 (359)
Q Consensus 331 ~~~~l~~~~~~~~--~d~~i~iwd~~~g 356 (359)
++++++++..... ....+.+||+.+.
T Consensus 130 dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CCceeeeccccccccccceeeeecCCCC
Confidence 8888887754221 1245777887654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=88.37 E-value=4.4 Score=34.04 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=48.9
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCC-CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC------Cc
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GH 300 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~ 300 (359)
|.....+..+.+++. +++.|+.+ ..+.+||+.+ ..|.. ...+... ..-..++..+++. +++.++.+ ..
T Consensus 74 ~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~-~~w~~-~~~~~~~-r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~ 148 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS-DSWIP-GPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFEKN 148 (387)
T ss_dssp CCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGG-TEEEE-CCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCCCC
T ss_pred cccceeEEEEecCCc-EEEeecCCCcceeEecCcc-Ccccc-ccccccc-ccccceeeecCCc-eeeeccccccccccce
Confidence 333445678888887 78877655 5799999987 55542 1112111 1123456667888 88877642 46
Q ss_pred EEEEECCCC
Q 018235 301 IAIWDTRVG 309 (359)
Q Consensus 301 I~iwD~r~~ 309 (359)
+.+||..+.
T Consensus 149 v~~yd~~~~ 157 (387)
T d1k3ia3 149 GEVYSPSSK 157 (387)
T ss_dssp EEEEETTTT
T ss_pred eeeecCCCC
Confidence 889998875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.82 E-value=6.5 Score=31.57 Aligned_cols=159 Identities=7% Similarity=-0.088 Sum_probs=92.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+.+..+++...+.++..+-...+.|.+.++.. ......+........+|+..|....++
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg---------------------~~~~~l~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG---------------------TQRRVLFDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------------------CSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCC---------------------ceEEEEecccccCCcEEEEecccCcEE
Confidence 56788999876657777777888999999876 122222333334677899988776333
Q ss_pred EEEcCCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 246 VTGDCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 246 ~sgs~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.+-...+..+|| ++..... . ......-....+|++.+.+..++.+-...+.|...|+... .....+.... ..
T Consensus 138 ~t~~~~~~~~I~r~~~dG~~~-~---~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~-~P 211 (263)
T d1npea_ 138 WTDWNRDNPKIETSHMDGTNR-R---ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YP 211 (263)
T ss_dssp EEECCSSSCEEEEEETTSCCC-E---EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SE
T ss_pred EeecCCCCcEEEEecCCCCCc-e---eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCC-Cc
Confidence 343222333344 4433211 1 1111222456789999887746676677889999998764 2222223322 24
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..|++. +..|.|.... .+.|...+..+|
T Consensus 212 ~~lav~--~~~lYwtd~~---~~~I~~~~~~~g 239 (263)
T d1npea_ 212 FAVTSY--GKNLYYTDWK---TNSVIAMDLAIS 239 (263)
T ss_dssp EEEEEE--TTEEEEEETT---TTEEEEEETTTT
T ss_pred EEEEEE--CCEEEEEECC---CCEEEEEECCCC
Confidence 567765 5566666432 444555555544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.65 E-value=9 Score=33.03 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+..-.++..+..++++...++. |+++++..+ ........-.+.|..+..++....+.....+.-.+..+..+|+.
T Consensus 335 ~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~-~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~ 413 (430)
T d1qfma1 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (430)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred cceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCC-cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence 334433344444435555555544 788888876 33222232334566667677777777666666668888889988
Q ss_pred CCcc
Q 018235 355 RGEI 358 (359)
Q Consensus 355 ~g~v 358 (359)
++++
T Consensus 414 t~~~ 417 (430)
T d1qfma1 414 KEEL 417 (430)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 8764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.48 E-value=7.1 Score=33.43 Aligned_cols=138 Identities=7% Similarity=-0.078 Sum_probs=70.0
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|..++|+.+ .++. ..++.+..++..... .......-..++.++.|+|. .++
T Consensus 88 ~v~~vafs~d---~l~v-~~~~~l~~~~~~~l~---------------------~~~~~~~~~~~~~~~~~~p~---~~~ 139 (381)
T d1xipa_ 88 DVIFVCFHGD---QVLV-STRNALYSLDLEELS---------------------EFRTVTSFEKPVFQLKNVNN---TLV 139 (381)
T ss_dssp TEEEEEEETT---EEEE-EESSEEEEEESSSTT---------------------CEEEEEECSSCEEEEEECSS---EEE
T ss_pred CeEEEEeeCC---EEEE-EeCCCEEEEEeeccc---------------------cccccccccccccceecCCc---eeE
Confidence 5777888753 2333 234668888877621 11222222346788889885 556
Q ss_pred EEcCCCcEEEEecCCCCccee--cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE-ECCCCCCceEEeecCCCCE
Q 018235 247 TGDCNSCIYLWEPASDATWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW-DTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw-D~r~~~~~~~~~~~h~~~V 323 (359)
....+|.+.++++........ ....+. -.+.+.+++|++.+. .++++..++ ..+- ++... ..+..-......|
T Consensus 140 l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgk-q~v~~~g~~-~q~k~~i~~~-~~~~~p~~~~~~v 215 (381)
T d1xipa_ 140 ILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSF-QSFAWRNGE-MEKQFEFSLP-SELEELPVEEYSP 215 (381)
T ss_dssp EEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCE-EEEEEETTE-EEEEEEECCC-HHHHTSCTTTSEE
T ss_pred EEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcE-EEEEeCCCc-eeeccCCCCc-cccCCCcCCCcce
Confidence 666789999999877422110 000011 124566777777666 444443221 1111 11111 0000001123357
Q ss_pred EEEEEcCCCCeEE
Q 018235 324 NVISWNRCWLAVC 336 (359)
Q Consensus 324 ~~i~~s~~~~~l~ 336 (359)
.+|.|-.+..+++
T Consensus 216 ~sI~WL~~~~F~v 228 (381)
T d1xipa_ 216 LSVTILSPQDFLA 228 (381)
T ss_dssp EEEEESSSSEEEE
T ss_pred eEEEEecCceEEE
Confidence 7888876666554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=84.07 E-value=4.9 Score=35.13 Aligned_cols=149 Identities=6% Similarity=-0.079 Sum_probs=85.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCC-eEEEEcCC--
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTG-RLVTGDCN-- 251 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~-~l~sgs~d-- 251 (359)
+|..+++.-..+++|.+-|+... +...+.. ......+++...++.+. +++.++..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f---------------------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~v 156 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM---------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET 156 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred ceeEEEEEcCCCceEEEEECcce---------------------eeeEEEecCCCCCCceeecccCCCeEEEEccCcccc
Confidence 56667888889999999999872 3322222 22335566666543322 55554432
Q ss_pred ----------------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-----------------
Q 018235 252 ----------------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----------------- 298 (359)
Q Consensus 252 ----------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----------------- 298 (359)
+.+.+.|..+ .+.. .+... ......+.++|+|..+|+++-..
T Consensus 157 P~pndg~~l~d~~~y~~~~t~ID~~t-m~V~--~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i 231 (459)
T d1fwxa2 157 PLVNDGTNMEDVANYVNVFTAVDADK-WEVA--WQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 231 (459)
T ss_dssp ESSCSSSSTTCGG-EEEEEEEEETTT-TEEE--EEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccCCCCccccchhhcceEEEEEecCC-ceEE--EEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEE
Confidence 2245566654 2221 11111 12455688999999666666321
Q ss_pred --------------------CcEEEEECCCC--CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 299 --------------------GHIAIWDTRVG--KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 299 --------------------g~I~iwD~r~~--~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+.+.+.|.+.. ...+..+....+ ...+..+|+|++++.+.. .+..+.++|.+
T Consensus 232 ~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGK---Ls~tVSViD~~ 305 (459)
T d1fwxa2 232 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGK---LSPTVTVLDVT 305 (459)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEEECT---TSSBEEEEEGG
T ss_pred EEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCEEEEeCC---cCCcEEEEEeh
Confidence 34567777653 122333332232 456789999999988754 36778888865
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.46 E-value=14 Score=31.73 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=58.3
Q ss_pred eeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCc-EEecCCCCceEEEEeCCCCC
Q 018235 168 VNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~ 242 (359)
+-.++++|++..++.+-+.. ..|+++|+.+ ++.+ ..+.. ....++.|++++.
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t---------------------g~~~~~~i~~--~~~~~~~W~~D~~ 183 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------AKELPDVLER--VKFSCMAWTHDGK 183 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------TEEEEEEEEE--ECSCCEEECTTSS
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCc---------------------ceeccccccc--ccccceEEcCCCC
Confidence 33456789995555554444 4689999987 2222 12211 1124689999998
Q ss_pred CeEEEEcC---------------CCcEEEEecCCCCcceecCccccC--CCCCeEEEEecCCCCCEEEEEe
Q 018235 243 GRLVTGDC---------------NSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCS 296 (359)
Q Consensus 243 ~~l~sgs~---------------dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s 296 (359)
+++.+.-. ...|.+|.+.+...-- ...+.. ....+..+..++++..++++.+
T Consensus 184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d--~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~ 252 (430)
T d1qfma1 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (430)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEeccccCcccccccccCCcceEEEEECCCCcccc--ccccccccCCceEEeeeccCCcceeeEEee
Confidence 65555421 1256777765532111 112222 2334667788999986665554
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.15 E-value=14 Score=31.51 Aligned_cols=147 Identities=7% Similarity=0.046 Sum_probs=84.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
...+-+++++.. .+++.|+.++ +.|..+..-.......... ....+...+ ..+..++++-+ .|
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~--------~~~~~~~~i----p~v~~vafs~d---~l 99 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTP--------LTFKWEKEI----PDVIFVCFHGD---QV 99 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCC--------CCCSEEEEC----TTEEEEEEETT---EE
T ss_pred cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCC--------CcceeccCC----CCeEEEEeeCC---EE
Confidence 456778888766 5677777665 5676654421111100000 011222222 25888999754 34
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-ceE----EeecCC
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALT----SFKAHN 320 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~----~~~~h~ 320 (359)
+.. .++.+..++........ ....-...+.++.++|. .++.+..++.+.++++...+. ++. .+. -.
T Consensus 100 ~v~-~~~~l~~~~~~~l~~~~----~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~ 170 (381)
T d1xipa_ 100 LVS-TRNALYSLDLEELSEFR----TVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VT 170 (381)
T ss_dssp EEE-ESSEEEEEESSSTTCEE----EEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEE-EC
T ss_pred EEE-eCCCEEEEEeecccccc----ccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEE-ec
Confidence 444 35667778776532211 11223456788888875 577788899999999988721 111 111 23
Q ss_pred CCEEEEEEcCCCCeEEEE
Q 018235 321 ADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~ 338 (359)
+.+.+++|++.|..++.+
T Consensus 171 ~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 171 NSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp SSEEEEEETTSCEEEEEE
T ss_pred CCceEEEEeCCcEEEEEe
Confidence 568889999888877665
|